Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40860.t1 | XP_003614041.2 | 99 | 100 | 1 | 0 | 26 | 125 | 58 | 157 | 3.00E-46 | 194.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40860.t1 | O74310 | 52.0 | 100 | 48 | 0 | 26 | 125 | 89 | 188 | 7.4e-25 | 114.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40860.t1 | G7JWS4 | 99.0 | 100 | 1 | 0 | 26 | 125 | 58 | 157 | 2.2e-46 | 194.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene40860 | 0.824694 | 7.03E-54 | -1.69E-46 |
| MS.gene050442 | MS.gene40860 | 0.80633 | 8.67E-50 | -1.69E-46 |
| MS.gene050680 | MS.gene40860 | 0.80967 | 1.69E-50 | -1.69E-46 |
| MS.gene050750 | MS.gene40860 | 0.802064 | 6.70E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene40860 | 0.80893 | 2.43E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene40860 | 0.811465 | 6.91E-51 | -1.69E-46 |
| MS.gene052426 | MS.gene40860 | 0.803701 | 3.07E-49 | -1.69E-46 |
| MS.gene053006 | MS.gene40860 | 0.802579 | 5.25E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene40860 | 0.801713 | 7.91E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene40860 | 0.809601 | 1.75E-50 | -1.69E-46 |
| MS.gene054405 | MS.gene40860 | 0.808968 | 2.39E-50 | -1.69E-46 |
| MS.gene054559 | MS.gene40860 | 0.804286 | 2.32E-49 | -1.69E-46 |
| MS.gene054657 | MS.gene40860 | 0.804488 | 2.11E-49 | -1.69E-46 |
| MS.gene054658 | MS.gene40860 | 0.800329 | 1.52E-48 | -1.69E-46 |
| MS.gene054775 | MS.gene40860 | 0.810376 | 1.19E-50 | -1.69E-46 |
| MS.gene05510 | MS.gene40860 | 0.812098 | 5.03E-51 | -1.69E-46 |
| MS.gene055608 | MS.gene40860 | 0.800151 | 1.65E-48 | -1.69E-46 |
| MS.gene055701 | MS.gene40860 | 0.82698 | 2.01E-54 | -1.69E-46 |
| MS.gene055818 | MS.gene40860 | 0.806856 | 6.71E-50 | -1.69E-46 |
| MS.gene056173 | MS.gene40860 | 0.809505 | 1.83E-50 | -1.69E-46 |
| MS.gene057598 | MS.gene40860 | 0.812839 | 3.46E-51 | -1.69E-46 |
| MS.gene057693 | MS.gene40860 | 0.80242 | 5.66E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene40860 | 0.822217 | 2.67E-53 | -1.69E-46 |
| MS.gene058010 | MS.gene40860 | 0.805583 | 1.24E-49 | -1.69E-46 |
| MS.gene058146 | MS.gene40860 | 0.808039 | 3.77E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene40860 | 0.836822 | 7.47E-57 | -1.69E-46 |
| MS.gene060011 | MS.gene40860 | 0.822387 | 2.43E-53 | -1.69E-46 |
| MS.gene060310 | MS.gene40860 | 0.81191 | 5.53E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene40860 | 0.805748 | 1.15E-49 | -1.69E-46 |
| MS.gene060918 | MS.gene40860 | 0.819548 | 1.10E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40860.t1 | MTR_5g044050 | 98.020 | 101 | 2 | 0 | 25 | 125 | 57 | 157 | 3.68e-64 | 199 |
| MS.gene40860.t1 | MTR_1g115505 | 46.535 | 101 | 50 | 3 | 26 | 125 | 117 | 214 | 8.13e-22 | 89.7 |
| MS.gene40860.t1 | MTR_8g071110 | 44.554 | 101 | 53 | 3 | 26 | 125 | 93 | 191 | 1.87e-19 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40860.t1 | AT1G26520 | 91.000 | 100 | 9 | 0 | 26 | 125 | 70 | 169 | 5.16e-60 | 189 |
| MS.gene40860.t1 | AT1G15730 | 47.525 | 101 | 49 | 3 | 26 | 125 | 120 | 217 | 1.96e-23 | 94.4 |
| MS.gene40860.t1 | AT1G80480 | 48.515 | 101 | 48 | 3 | 26 | 125 | 117 | 214 | 3.72e-23 | 93.6 |
Find 35 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTTTGGCATCTATTCTT+TGG | 0.207860 | 5.2:+36082092 | MS.gene40860:CDS |
| AATGAGTTTGGTGAGGAAAT+TGG | 0.300166 | 5.2:+36081404 | MS.gene40860:CDS |
| GTCACCGTAAGTATCGTTAA+TGG | 0.320808 | 5.2:+36082157 | MS.gene40860:CDS |
| TTGCACTGTTAAACATAGTT+TGG | 0.335183 | 5.2:+36081508 | MS.gene40860:CDS |
| AACAGAAGATTGTTGAGAAA+TGG | 0.344084 | 5.2:-36080587 | None:intergenic |
| TTTGGCTAATCCAGCACCTT+TGG | 0.352272 | 5.2:+36082078 | MS.gene40860:CDS |
| GCTGTGATATTGAATGAGTT+TGG | 0.371555 | 5.2:+36081392 | MS.gene40860:CDS |
| ACTCTCATCACCGGTTATCT+TGG | 0.407030 | 5.2:+36080616 | MS.gene40860:CDS |
| TTGGCATCTATTCTTTGGTT+GGG | 0.407476 | 5.2:+36082097 | MS.gene40860:CDS |
| TTTGGCATCTATTCTTTGGT+TGG | 0.414271 | 5.2:+36082096 | MS.gene40860:CDS |
| TTCTCTGCACAAGCTGCTCA+AGG | 0.418476 | 5.2:-36081538 | None:intergenic |
| AGAATAGATGCCAAAGGTGC+TGG | 0.420889 | 5.2:-36082088 | None:intergenic |
| ATTGCTGGAAACTACTGGTT+TGG | 0.422220 | 5.2:+36082060 | MS.gene40860:CDS |
| CAGTAGTTTCCAGCAATATA+TGG | 0.429786 | 5.2:-36082054 | None:intergenic |
| TAGGCTAGACCATATATTGC+TGG | 0.449889 | 5.2:+36082045 | MS.gene40860:intron |
| GAAAGAGCATTGATAAATGA+AGG | 0.462576 | 5.2:+36081431 | MS.gene40860:CDS |
| TTTGCCAGCACCAAGATAAC+CGG | 0.477454 | 5.2:-36080626 | None:intergenic |
| GTGGTGCAGTTGTTGAAGAA+TGG | 0.477782 | 5.2:+36081459 | MS.gene40860:CDS |
| CATATATTGCTGGAAACTAC+TGG | 0.482344 | 5.2:+36082055 | MS.gene40860:CDS |
| TGGTGCAGTTGTTGAAGAAT+GGG | 0.484968 | 5.2:+36081460 | MS.gene40860:CDS |
| TCATCCATTAACGATACTTA+CGG | 0.485998 | 5.2:-36082161 | None:intergenic |
| TCTTTGGTTGGGTGAACAGT+TGG | 0.490349 | 5.2:+36082108 | MS.gene40860:CDS |
| GAATGGGTTGAACTTGCTAA+TGG | 0.500533 | 5.2:+36081476 | MS.gene40860:CDS |
| ATTTCTCAACAATCTTCTGT+TGG | 0.503553 | 5.2:+36080589 | MS.gene40860:CDS |
| ATCACCGGTTATCTTGGTGC+TGG | 0.534620 | 5.2:+36080622 | MS.gene40860:CDS |
| TCTCTGCACAAGCTGCTCAA+GGG | 0.549355 | 5.2:-36081537 | None:intergenic |
| TTGATAAATGAAGGGGAAAG+TGG | 0.553774 | 5.2:+36081440 | MS.gene40860:CDS |
| GTTGGTGTCACTCTCATCAC+CGG | 0.555661 | 5.2:+36080607 | MS.gene40860:CDS |
| AAAGAGCATTGATAAATGAA+GGG | 0.594588 | 5.2:+36081432 | MS.gene40860:CDS |
| AAGAGCATTGATAAATGAAG+GGG | 0.611247 | 5.2:+36081433 | MS.gene40860:CDS |
| TCTTGGTGCTGGCAAATCCA+CGG | 0.620578 | 5.2:+36080633 | MS.gene40860:CDS |
| AGCTTGTGCAGAGAAAAGAA+AGG | 0.645456 | 5.2:+36081546 | MS.gene40860:CDS |
| GTTTGGTGAGGAAATTGGAG+TGG | 0.654078 | 5.2:+36081409 | MS.gene40860:CDS |
| AACCAAAGAATAGATGCCAA+AGG | 0.667612 | 5.2:-36082094 | None:intergenic |
| GATATTGAATGAGTTTGGTG+AGG | 0.685395 | 5.2:+36081397 | MS.gene40860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAATCTTAG+AGG | + | chr5.2:36081189-36081208 | MS.gene40860:intron | 10.0% |
| !! | AAAAAAAAAAAAATCTTAGA+GGG | + | chr5.2:36081190-36081209 | MS.gene40860:intron | 10.0% |
| !!! | TTTCATTTTATTTTTGTTAT+TGG | + | chr5.2:36080722-36080741 | MS.gene40860:intron | 10.0% |
| !! | TATTTATAAGAGATTCAAAA+GGG | - | chr5.2:36081958-36081977 | None:intergenic | 15.0% |
| !! | TGTTTAATTGTACTAAAATA+CGG | - | chr5.2:36082004-36082023 | None:intergenic | 15.0% |
| !! | TTATATACATAAGCAATAAT+AGG | - | chr5.2:36081695-36081714 | None:intergenic | 15.0% |
| !!! | AAGTATTTTTTATTTGGATT+TGG | + | chr5.2:36080876-36080895 | MS.gene40860:intron | 15.0% |
| !!! | TAGTACAATTAAACATTTTT+AGG | + | chr5.2:36082009-36082028 | MS.gene40860:intron | 15.0% |
| !! | ATTTATAAGAGATTCAAAAG+GGG | - | chr5.2:36081957-36081976 | None:intergenic | 20.0% |
| !! | CCAATTAGAAATTATAGAAA+GGG | - | chr5.2:36080675-36080694 | None:intergenic | 20.0% |
| !! | CCTTTCTATAATTTCTAATT+GGG | + | chr5.2:36080673-36080692 | MS.gene40860:intron | 20.0% |
| !! | CTATTTATAAGAGATTCAAA+AGG | - | chr5.2:36081959-36081978 | None:intergenic | 20.0% |
| !! | TATAGAAAGGGAAAATTAAT+GGG | - | chr5.2:36080663-36080682 | None:intergenic | 20.0% |
| !! | TTATAGAAAGGGAAAATTAA+TGG | - | chr5.2:36080664-36080683 | None:intergenic | 20.0% |
| !!! | AACAAACTATTCAAATTTTG+AGG | + | chr5.2:36081579-36081598 | MS.gene40860:intron | 20.0% |
| !!! | TCGTGTAAGTATTTTTTATT+TGG | + | chr5.2:36080870-36080889 | MS.gene40860:intron | 20.0% |
| ! | ACATAAGCAATAATAGGATA+AGG | - | chr5.2:36081689-36081708 | None:intergenic | 25.0% |
| ! | ATAGAAAGGGAAAATTAATG+GGG | - | chr5.2:36080662-36080681 | None:intergenic | 25.0% |
| ! | ATATATTGAACTCTCAACAT+GGG | + | chr5.2:36081360-36081379 | MS.gene40860:intron | 25.0% |
| ! | ATTCCATTTCACAAAATCAT+TGG | - | chr5.2:36081304-36081323 | None:intergenic | 25.0% |
| ! | CATAAGCAATAATAGGATAA+GGG | - | chr5.2:36081688-36081707 | None:intergenic | 25.0% |
| ! | CCAAAAACACTATAATTGTA+AGG | + | chr5.2:36081220-36081239 | MS.gene40860:intron | 25.0% |
| ! | CCCAATTAGAAATTATAGAA+AGG | - | chr5.2:36080676-36080695 | None:intergenic | 25.0% |
| ! | CCCTTTCTATAATTTCTAAT+TGG | + | chr5.2:36080672-36080691 | MS.gene40860:intron | 25.0% |
| ! | CTATTATTTCAACAAGCTAT+AGG | - | chr5.2:36080762-36080781 | None:intergenic | 25.0% |
| ! | TTATAAATAGATGCAGTGTT+CGG | + | chr5.2:36081969-36081988 | MS.gene40860:intron | 25.0% |
| !! | AATATTTTCAGTAGCGTTTT+TGG | + | chr5.2:36080840-36080859 | MS.gene40860:intron | 25.0% |
| !! | CCTTACAATTATAGTGTTTT+TGG | - | chr5.2:36081223-36081242 | None:intergenic | 25.0% |
| !! | TTTAGGTATTTTGTGTATGT+AGG | + | chr5.2:36082026-36082045 | MS.gene40860:intron | 25.0% |
| !! | TTTTCATATAAGCTATAAGC+TGG | + | chr5.2:36081751-36081770 | MS.gene40860:intron | 25.0% |
| !!! | AAAGAGCATTGATAAATGAA+GGG | + | chr5.2:36081432-36081451 | MS.gene40860:CDS | 25.0% |
| !!! | ATTTATTTCTATAAGCTCTC+CGG | - | chr5.2:36081791-36081810 | None:intergenic | 25.0% |
| AAACCTTGTAACTGTTATAC+TGG | + | chr5.2:36081258-36081277 | MS.gene40860:intron | 30.0% | |
| AACAGAAGATTGTTGAGAAA+TGG | - | chr5.2:36080590-36080609 | None:intergenic | 30.0% | |
| AATCCTTGATTTCAGCTTAT+TGG | + | chr5.2:36080929-36080948 | MS.gene40860:intron | 30.0% | |
| ATCCTTGATTTCAGCTTATT+GGG | + | chr5.2:36080930-36080949 | MS.gene40860:intron | 30.0% | |
| ATTTCTCAACAATCTTCTGT+TGG | + | chr5.2:36080589-36080608 | MS.gene40860:CDS | 30.0% | |
| CATATATTGAACTCTCAACA+TGG | + | chr5.2:36081359-36081378 | MS.gene40860:intron | 30.0% | |
| GAAAACTCACATACAAGTTA+GGG | - | chr5.2:36081122-36081141 | None:intergenic | 30.0% | |
| GGCACTAAAAATTTAAACAC+CGG | + | chr5.2:36081600-36081619 | MS.gene40860:intron | 30.0% | |
| TAGAAAATGCCGAAATTGTT+AGG | + | chr5.2:36081075-36081094 | MS.gene40860:intron | 30.0% | |
| TCATCCATTAACGATACTTA+CGG | - | chr5.2:36082164-36082183 | None:intergenic | 30.0% | |
| TGAAAACTCACATACAAGTT+AGG | - | chr5.2:36081123-36081142 | None:intergenic | 30.0% | |
| TGTGAAATGGAATTGTGAAT+TGG | + | chr5.2:36081311-36081330 | MS.gene40860:intron | 30.0% | |
| TTGCACTGTTAAACATAGTT+TGG | + | chr5.2:36081508-36081527 | MS.gene40860:CDS | 30.0% | |
| ! | TTTTTGGATGATAGATGAAG+TGG | - | chr5.2:36081157-36081176 | None:intergenic | 30.0% |
| !! | AAGAGCATTGATAAATGAAG+GGG | + | chr5.2:36081433-36081452 | MS.gene40860:CDS | 30.0% |
| !! | GAAAGAGCATTGATAAATGA+AGG | + | chr5.2:36081431-36081450 | MS.gene40860:CDS | 30.0% |
| !! | TTTATTTCTATAAGCTCTCC+GGG | - | chr5.2:36081790-36081809 | None:intergenic | 30.0% |
| AACCAAAGAATAGATGCCAA+AGG | - | chr5.2:36082097-36082116 | None:intergenic | 35.0% | |
| AAGCACTTGTGAGATTCTTA+GGG | - | chr5.2:36081859-36081878 | None:intergenic | 35.0% | |
| CAGTAGTTTCCAGCAATATA+TGG | - | chr5.2:36082057-36082076 | None:intergenic | 35.0% | |
| CATATATTGCTGGAAACTAC+TGG | + | chr5.2:36082055-36082074 | MS.gene40860:CDS | 35.0% | |
| CTCAATATAATCACGACACA+CGG | - | chr5.2:36080963-36080982 | None:intergenic | 35.0% | |
| CTTCCAGTATAACAGTTACA+AGG | - | chr5.2:36081264-36081283 | None:intergenic | 35.0% | |
| GCTGTGATATTGAATGAGTT+TGG | + | chr5.2:36081392-36081411 | MS.gene40860:CDS | 35.0% | |
| TAAGCACTTGTGAGATTCTT+AGG | - | chr5.2:36081860-36081879 | None:intergenic | 35.0% | |
| TTGATAAATGAAGGGGAAAG+TGG | + | chr5.2:36081440-36081459 | MS.gene40860:CDS | 35.0% | |
| TTGGCATCTATTCTTTGGTT+GGG | + | chr5.2:36082097-36082116 | MS.gene40860:CDS | 35.0% | |
| TTTGGCATCTATTCTTTGGT+TGG | + | chr5.2:36082096-36082115 | MS.gene40860:CDS | 35.0% | |
| ! | AATGAGTTTGGTGAGGAAAT+TGG | + | chr5.2:36081404-36081423 | MS.gene40860:CDS | 35.0% |
| ! | GATATTGAATGAGTTTGGTG+AGG | + | chr5.2:36081397-36081416 | MS.gene40860:CDS | 35.0% |
| !! | CTTGTATGTGAGTTTTCAAG+TGG | + | chr5.2:36081125-36081144 | MS.gene40860:intron | 35.0% |
| ACCGGACTCATAATTACACT+TGG | + | chr5.2:36081618-36081637 | MS.gene40860:intron | 40.0% | |
| AGATTCTTAGGGAGAGCTTA+TGG | - | chr5.2:36081848-36081867 | None:intergenic | 40.0% | |
| AGCTTGTGCAGAGAAAAGAA+AGG | + | chr5.2:36081546-36081565 | MS.gene40860:CDS | 40.0% | |
| CACCTTTGGCATCTATTCTT+TGG | + | chr5.2:36082092-36082111 | MS.gene40860:CDS | 40.0% | |
| CCCAAGTGTAATTATGAGTC+CGG | - | chr5.2:36081622-36081641 | None:intergenic | 40.0% | |
| CCGGACTCATAATTACACTT+GGG | + | chr5.2:36081619-36081638 | MS.gene40860:intron | 40.0% | |
| CTCACAAGTGCTTATACTAG+TGG | + | chr5.2:36081866-36081885 | MS.gene40860:intron | 40.0% | |
| GAAAATTAATGGGGTTACCG+TGG | - | chr5.2:36080653-36080672 | None:intergenic | 40.0% | |
| GATTTCAGCTTATTGGGCAT+TGG | + | chr5.2:36080936-36080955 | MS.gene40860:intron | 40.0% | |
| GGATTAAAAGCAACCGAGTT+TGG | - | chr5.2:36080914-36080933 | None:intergenic | 40.0% | |
| GGCATTCAGCCTAACAATTT+CGG | - | chr5.2:36081087-36081106 | None:intergenic | 40.0% | |
| GTTTCTGCAAACTCCAAACT+CGG | + | chr5.2:36080898-36080917 | MS.gene40860:intron | 40.0% | |
| TAGGCTAGACCATATATTGC+TGG | + | chr5.2:36082045-36082064 | MS.gene40860:intron | 40.0% | |
| TCAGATAAGCTAATCCAAGC+AGG | + | chr5.2:36081895-36081914 | MS.gene40860:intron | 40.0% | |
| TCTAGTTGAGCTCGAACTTA+TGG | - | chr5.2:36081059-36081078 | None:intergenic | 40.0% | |
| TGCCCAATAAGCTGAAATCA+AGG | - | chr5.2:36080935-36080954 | None:intergenic | 40.0% | |
| TGGTGCAGTTGTTGAAGAAT+GGG | + | chr5.2:36081460-36081479 | MS.gene40860:CDS | 40.0% | |
| TTCACAAAATCATTGGCCGA+GGG | - | chr5.2:36081297-36081316 | None:intergenic | 40.0% | |
| TTTCACAAAATCATTGGCCG+AGG | - | chr5.2:36081298-36081317 | None:intergenic | 40.0% | |
| ! | ATTGCTGGAAACTACTGGTT+TGG | + | chr5.2:36082060-36082079 | MS.gene40860:CDS | 40.0% |
| ! | CGGCCAATGATTTTGTGAAA+TGG | + | chr5.2:36081298-36081317 | MS.gene40860:intron | 40.0% |
| ! | GGGGCTTTGATAAAAGTGAA+CGG | - | chr5.2:36081938-36081957 | None:intergenic | 40.0% |
| ! | GTCACCGTAAGTATCGTTAA+TGG | + | chr5.2:36082157-36082176 | MS.gene40860:CDS | 40.0% |
| !! | GAATGGGTTGAACTTGCTAA+TGG | + | chr5.2:36081476-36081495 | MS.gene40860:CDS | 40.0% |
| ACATACAAGTTAGGGATCCC+AGG | - | chr5.2:36081114-36081133 | None:intergenic | 45.0% | |
| GTGGTGCAGTTGTTGAAGAA+TGG | + | chr5.2:36081459-36081478 | MS.gene40860:CDS | 45.0% | |
| TCTTTGGTTGGGTGAACAGT+TGG | + | chr5.2:36082108-36082127 | MS.gene40860:CDS | 45.0% | |
| TGAACTCTCAACATGGGAAG+AGG | + | chr5.2:36081366-36081385 | MS.gene40860:intron | 45.0% | |
| TTTGCCAGCACCAAGATAAC+CGG | - | chr5.2:36080629-36080648 | None:intergenic | 45.0% | |
| TTTGGCTAATCCAGCACCTT+TGG | + | chr5.2:36082078-36082097 | MS.gene40860:CDS | 45.0% | |
| ! | ACTCTCATCACCGGTTATCT+TGG | + | chr5.2:36080616-36080635 | MS.gene40860:CDS | 45.0% |
| ! | AGAATAGATGCCAAAGGTGC+TGG | - | chr5.2:36082091-36082110 | None:intergenic | 45.0% |
| ! | GCTGGTTTCATAAACTTGCC+CGG | + | chr5.2:36081769-36081788 | MS.gene40860:intron | 45.0% |
| ! | GTTTGGTGAGGAAATTGGAG+TGG | + | chr5.2:36081409-36081428 | MS.gene40860:CDS | 45.0% |
| !!! | TTTTTTTTAGATTTTATTTT+TGG | - | chr5.2:36081173-36081192 | None:intergenic | 5.0% |
| AAGTTAGGGATCCCAGGTCA+TGG | - | chr5.2:36081108-36081127 | None:intergenic | 50.0% | |
| AGATGCAGTGTTCGGCAAAG+TGG | + | chr5.2:36081977-36081996 | MS.gene40860:intron | 50.0% | |
| GATGCAGTGTTCGGCAAAGT+GGG | + | chr5.2:36081978-36081997 | MS.gene40860:intron | 50.0% | |
| TAGGCTGAATGCCATGACCT+GGG | + | chr5.2:36081094-36081113 | MS.gene40860:intron | 50.0% | |
| TCTCTGCACAAGCTGCTCAA+GGG | - | chr5.2:36081540-36081559 | None:intergenic | 50.0% | |
| TGAACGGCAACACTACGCAA+TGG | - | chr5.2:36081922-36081941 | None:intergenic | 50.0% | |
| TTAGGCTGAATGCCATGACC+TGG | + | chr5.2:36081093-36081112 | MS.gene40860:intron | 50.0% | |
| TTCTCTGCACAAGCTGCTCA+AGG | - | chr5.2:36081541-36081560 | None:intergenic | 50.0% | |
| ! | ATCACCGGTTATCTTGGTGC+TGG | + | chr5.2:36080622-36080641 | MS.gene40860:CDS | 50.0% |
| ! | TGGAAGTGTGTTCGAACCCT+CGG | + | chr5.2:36081278-36081297 | MS.gene40860:intron | 50.0% |
| !! | GTTGGTGTCACTCTCATCAC+CGG | + | chr5.2:36080607-36080626 | MS.gene40860:CDS | 50.0% |
| !! | TCTTGGTGCTGGCAAATCCA+CGG | + | chr5.2:36080633-36080652 | MS.gene40860:CDS | 50.0% |
| CACTACGCAATGGACCTGCT+TGG | - | chr5.2:36081912-36081931 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 36080578 | 36082183 | 36080578 | ID=MS.gene40860 |
| chr5.2 | mRNA | 36080578 | 36082183 | 36080578 | ID=MS.gene40860.t1;Parent=MS.gene40860 |
| chr5.2 | exon | 36080578 | 36080654 | 36080578 | ID=MS.gene40860.t1.exon1;Parent=MS.gene40860.t1 |
| chr5.2 | CDS | 36080578 | 36080654 | 36080578 | ID=cds.MS.gene40860.t1;Parent=MS.gene40860.t1 |
| chr5.2 | exon | 36081388 | 36081567 | 36081388 | ID=MS.gene40860.t1.exon2;Parent=MS.gene40860.t1 |
| chr5.2 | CDS | 36081388 | 36081567 | 36081388 | ID=cds.MS.gene40860.t1;Parent=MS.gene40860.t1 |
| chr5.2 | exon | 36082048 | 36082183 | 36082048 | ID=MS.gene40860.t1.exon3;Parent=MS.gene40860.t1 |
| chr5.2 | CDS | 36082048 | 36082183 | 36082048 | ID=cds.MS.gene40860.t1;Parent=MS.gene40860.t1 |
| Gene Sequence |
| Protein sequence |
