AlfalfaGEDB | MS.gene43324

M. sativa cultivar XinJiangDaYe / MS.gene43324

KEGG: K13412
GO: GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
PFAM: PF00036.35 PF13499.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43324.t1	XP_030520396.1	85.1	74	11	0	45	118	41	114	2.00E-30	142.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43324.t1	Q852N6	71.8	85	24	0	34	118	451	535	3.9e-30	132.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43324.t1	A0A2P5Y254	78.8	85	17	1	35	118	437	521	1.9e-30	141.7

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04915	MS.gene43324	0.833644	4.74E-56	-1.69E-46
MS.gene049178	MS.gene43324	0.803043	4.21E-49	-1.69E-46
MS.gene04917	MS.gene43324	0.834409	3.05E-56	-1.69E-46
MS.gene049208	MS.gene43324	0.812193	4.80E-51	-1.69E-46
MS.gene049822	MS.gene43324	0.804533	2.06E-49	-1.69E-46
MS.gene04984	MS.gene43324	0.829281	5.62E-55	-1.69E-46
MS.gene049887	MS.gene43324	0.826472	2.66E-54	-1.69E-46
MS.gene050114	MS.gene43324	0.843522	1.33E-58	-1.69E-46
MS.gene050317	MS.gene43324	0.828437	9.00E-55	-1.69E-46
MS.gene050838	MS.gene43324	0.812415	4.29E-51	-1.69E-46
MS.gene051102	MS.gene43324	0.822619	2.15E-53	-1.69E-46
MS.gene051184	MS.gene43324	0.801292	9.65E-49	-1.69E-46
MS.gene051852	MS.gene43324	0.824654	7.18E-54	-1.69E-46
MS.gene052307	MS.gene43324	0.811798	5.85E-51	-1.69E-46
MS.gene053381	MS.gene43324	0.801652	8.14E-49	-1.69E-46
MS.gene053677	MS.gene43324	0.815045	1.13E-51	-1.69E-46
MS.gene055311	MS.gene43324	0.813744	2.19E-51	-1.69E-46
MS.gene055313	MS.gene43324	0.813137	2.98E-51	-1.69E-46
MS.gene055314	MS.gene43324	0.807266	5.50E-50	-1.69E-46
MS.gene055864	MS.gene43324	0.816596	5.10E-52	-1.69E-46
MS.gene056181	MS.gene43324	0.808206	3.47E-50	-1.69E-46
MS.gene056432	MS.gene43324	0.800497	1.40E-48	-1.69E-46
MS.gene056787	MS.gene43324	0.800573	1.35E-48	-1.69E-46
MS.gene057360	MS.gene43324	0.821726	3.46E-53	-1.69E-46
MS.gene058278	MS.gene43324	0.814782	1.29E-51	-1.69E-46
MS.gene058638	MS.gene43324	0.819195	1.32E-52	-1.69E-46
MS.gene058639	MS.gene43324	0.832287	1.03E-55	-1.69E-46
MS.gene058758	MS.gene43324	0.850764	1.37E-60	-1.69E-46
MS.gene059050	MS.gene43324	0.808606	2.85E-50	-1.69E-46
MS.gene059170	MS.gene43324	0.807628	4.61E-50	-1.69E-46
MS.gene059171	MS.gene43324	0.831778	1.38E-55	-1.69E-46
MS.gene059713	MS.gene43324	0.810968	8.85E-51	-1.69E-46
MS.gene059719	MS.gene43324	0.81544	9.24E-52	-1.69E-46
MS.gene059965	MS.gene43324	0.800829	1.20E-48	-1.69E-46
MS.gene06010	MS.gene43324	0.806876	6.65E-50	-1.69E-46
MS.gene060637	MS.gene43324	0.80852	2.97E-50	-1.69E-46
MS.gene060869	MS.gene43324	0.832569	8.77E-56	-1.69E-46
MS.gene060870	MS.gene43324	0.830113	3.53E-55	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43324.t1	MTR_1g041150	98.649	74	1	0	45	118	467	540	8.31e-46	157
MS.gene43324.t1	MTR_1g055255	79.730	74	15	0	45	118	473	546	5.91e-38	135
MS.gene43324.t1	MTR_7g106710	65.556	90	31	0	45	134	484	573	2.02e-35	129
MS.gene43324.t1	MTR_1g054865	74.324	74	19	0	45	118	510	583	2.73e-35	128
MS.gene43324.t1	MTR_5g099240	72.619	84	23	0	35	118	363	446	1.44e-34	125
MS.gene43324.t1	MTR_5g099240	72.619	84	23	0	35	118	435	518	2.66e-34	125
MS.gene43324.t1	MTR_7g106710	74.324	74	19	0	45	118	484	557	3.07e-34	125
MS.gene43324.t1	MTR_1g096490	64.706	85	30	0	34	118	368	452	1.62e-32	120
MS.gene43324.t1	MTR_3g098090	70.270	74	22	0	45	118	381	454	7.85e-32	118
MS.gene43324.t1	MTR_8g095440	68.919	74	23	0	45	118	379	452	1.23e-30	115
MS.gene43324.t1	MTR_3g098070	68.919	74	23	0	45	118	378	451	1.65e-30	114
MS.gene43324.t1	MTR_5g009830	53.409	88	40	1	38	124	408	495	6.79e-25	99.4
MS.gene43324.t1	MTR_0028s0170	54.321	81	36	1	45	124	427	507	5.03e-24	97.1
MS.gene43324.t1	MTR_8g099095	52.273	88	41	1	38	124	408	495	8.02e-24	96.3
MS.gene43324.t1	MTR_5g092810	50.000	88	43	1	38	124	434	521	5.87e-23	94.0
MS.gene43324.t1	MTR_5g089320	53.086	81	37	1	45	124	417	497	2.30e-22	92.0
MS.gene43324.t1	MTR_1g026190	53.086	81	37	1	45	124	431	511	3.30e-22	91.7
MS.gene43324.t1	MTR_4g132070	51.852	81	38	1	45	124	440	520	4.20e-22	91.7
MS.gene43324.t1	MTR_3g051770	57.534	73	30	1	45	116	432	504	6.05e-21	88.2
MS.gene43324.t1	MTR_5g089440	50.617	81	38	2	46	124	88	168	1.19e-19	81.3
MS.gene43324.t1	MTR_4g107490	50.000	78	37	2	44	119	421	498	7.68e-19	82.0
MS.gene43324.t1	MTR_4g132040	48.148	81	41	1	45	124	444	524	1.64e-18	81.3
MS.gene43324.t1	MTR_7g068710	51.948	77	33	2	47	119	405	481	1.02e-17	79.0
MS.gene43324.t1	MTR_1g052530	48.000	75	35	2	45	118	401	472	4.30e-14	68.6
MS.gene43324.t1	MTR_1g041080	84.375	32	5	0	1	32	32	63	9.59e-14	62.8
MS.gene43324.t1	MTR_7g091890	41.333	75	40	2	45	118	407	478	5.62e-12	62.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43324.t1	AT5G04870	81.081	74	14	0	45	118	499	572	2.38e-38	137
MS.gene43324.t1	AT3G10660	78.667	75	16	0	45	119	535	609	1.04e-37	135
MS.gene43324.t1	AT3G10660	78.667	75	16	0	45	119	535	609	1.04e-37	135
MS.gene43324.t1	AT2G38910	69.048	84	26	0	35	118	473	556	5.94e-36	130
MS.gene43324.t1	AT4G38230	67.857	84	27	0	35	118	393	476	4.69e-34	124
MS.gene43324.t1	AT4G38230	67.857	84	27	0	35	118	219	302	4.84e-34	122
MS.gene43324.t1	AT2G17290	70.238	84	25	0	35	118	424	507	4.23e-33	122
MS.gene43324.t1	AT2G17290	70.238	84	25	0	35	118	424	507	4.23e-33	122
MS.gene43324.t1	AT4G38230	67.857	84	27	0	35	118	363	446	6.26e-33	121
MS.gene43324.t1	AT4G38230	67.857	84	27	0	35	118	363	446	6.26e-33	121
MS.gene43324.t1	AT4G35310	75.676	74	18	0	45	118	446	519	4.48e-32	119
MS.gene43324.t1	AT4G35310	75.676	74	18	0	45	118	446	519	4.48e-32	119
MS.gene43324.t1	AT4G09570	65.882	85	29	0	34	118	363	447	7.53e-32	118
MS.gene43324.t1	AT1G35670	65.882	85	29	0	34	118	364	448	9.63e-32	118
MS.gene43324.t1	AT5G23580	74.324	74	19	0	45	118	371	444	8.01e-31	115
MS.gene43324.t1	AT5G12180	54.945	91	40	1	35	124	412	502	5.40e-29	110
MS.gene43324.t1	AT5G19360	54.945	91	40	1	35	124	407	497	6.76e-29	110
MS.gene43324.t1	AT4G23650	51.136	88	42	1	38	124	420	507	7.20e-24	96.7
MS.gene43324.t1	AT4G04720	49.383	81	40	1	45	124	428	508	1.17e-21	90.1
MS.gene43324.t1	AT4G04720	49.383	81	40	1	45	124	428	508	1.17e-21	90.1
MS.gene43324.t1	AT1G61950	50.617	81	39	1	45	124	448	528	2.92e-21	89.4
MS.gene43324.t1	AT4G04710	53.333	75	34	1	45	118	367	441	1.62e-20	87.0
MS.gene43324.t1	AT4G21940	50.617	81	39	1	45	124	450	530	1.87e-20	87.0
MS.gene43324.t1	AT4G21940	50.617	81	39	1	45	124	450	530	2.01e-20	86.7
MS.gene43324.t1	AT4G04710	53.333	75	34	1	45	118	394	468	2.88e-20	86.3
MS.gene43324.t1	AT4G04710	53.333	75	34	1	45	118	396	470	2.95e-20	86.3
MS.gene43324.t1	AT4G04710	53.333	75	34	1	45	118	381	455	3.10e-20	86.3
MS.gene43324.t1	AT1G76040	45.455	88	47	1	38	124	215	302	3.52e-20	84.7
MS.gene43324.t1	AT1G76040	45.455	88	47	1	38	124	215	302	3.52e-20	84.7
MS.gene43324.t1	AT4G04695	43.750	96	53	1	45	139	380	475	7.04e-20	85.1
MS.gene43324.t1	AT1G50700	46.914	81	42	1	45	124	422	502	8.67e-20	85.1
MS.gene43324.t1	AT1G76040	48.148	81	41	1	45	124	460	540	1.37e-19	84.3
MS.gene43324.t1	AT1G74740	48.193	83	41	2	44	124	407	489	3.43e-19	83.2
MS.gene43324.t1	AT1G50700	44.565	92	50	1	34	124	437	528	2.05e-18	80.9
MS.gene43324.t1	AT3G51850	45.263	95	49	2	30	121	387	481	3.20e-18	80.5
MS.gene43324.t1	AT4G04740	44.444	81	44	1	45	124	417	497	3.37e-18	80.5
MS.gene43324.t1	AT4G04740	44.444	81	44	1	45	124	417	497	3.37e-18	80.5
MS.gene43324.t1	AT4G04740	44.444	81	44	1	45	124	417	497	3.37e-18	80.5
MS.gene43324.t1	AT4G04740	44.444	81	44	1	45	124	417	497	3.37e-18	80.5
MS.gene43324.t1	AT4G04740	44.444	81	44	1	45	124	417	497	3.37e-18	80.5
MS.gene43324.t1	AT4G04740	44.444	81	44	1	45	124	417	497	3.37e-18	80.5
MS.gene43324.t1	AT4G04740	46.667	75	39	1	45	118	417	491	7.02e-18	79.3
MS.gene43324.t1	AT3G20410	45.679	81	43	1	45	124	440	520	1.05e-17	79.0
MS.gene43324.t1	AT3G20410	45.679	81	43	1	45	124	440	520	1.05e-17	79.0
MS.gene43324.t1	AT1G18890	48.193	83	41	2	44	124	411	493	1.30e-17	78.6
MS.gene43324.t1	AT3G51850	44.086	93	49	2	30	119	387	479	3.67e-17	77.4
MS.gene43324.t1	AT4G04700	41.667	96	55	1	45	139	380	475	1.28e-16	75.9
MS.gene43324.t1	AT5G19450	46.667	75	36	2	45	118	407	478	1.09e-14	70.5
MS.gene43324.t1	AT5G19450	46.667	75	36	2	45	118	407	478	1.09e-14	70.5
MS.gene43324.t1	AT3G57530	42.105	76	43	1	45	119	412	487	2.19e-14	69.3
MS.gene43324.t1	AT5G12480	41.096	73	42	1	46	118	409	480	2.59e-13	66.2
MS.gene43324.t1	AT1G76040	60.000	45	18	0	45	89	460	504	6.78e-13	65.1
MS.gene43324.t1	AT4G21940	62.791	43	16	0	45	87	450	492	1.15e-12	64.7
MS.gene43324.t1	AT5G12480	41.096	73	42	1	46	118	315	386	2.84e-12	63.5
MS.gene43324.t1	AT1G50700	55.814	43	19	0	45	87	422	464	5.86e-11	59.7

Find 18 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGAAGACAAGGTAGCTAAAA+AGG	0.261906	1.4:-33762114	None:intergenic
CAACAAGCTTGCGATGAGTT+TGG	0.307266	1.4:+33762008	MS.gene43324:CDS
TGAAGAGGCTACAAAGATAA+TGG	0.348956	1.4:+33759994	MS.gene43324:CDS
ATCTTTGTAGCCTCTTCAAC+AGG	0.374337	1.4:-33759989	None:intergenic
AACAGTGGGACAATTGATTA+TGG	0.379412	1.4:+33761870	MS.gene43324:CDS
GAAGAGGCTACAAAGATAAT+GGG	0.456216	1.4:+33759995	MS.gene43324:CDS
CAAAGAAATCGATGAAGATA+AGG	0.472552	1.4:+33762061	MS.gene43324:CDS
ATCTTTATCAAAGTAAGAAA+AGG	0.472805	1.4:-33761955	None:intergenic
TACTTTGATAAAGATGGAAG+TGG	0.530734	1.4:+33761963	MS.gene43324:CDS
ATCGATGAAGATAAGGTAAG+TGG	0.552011	1.4:+33762068	MS.gene43324:CDS
TCAACAGGATCATCATCCAT+AGG	0.602023	1.4:-33759974	None:intergenic
GGATGATGATCCTGTTGAAG+AGG	0.613042	1.4:+33759979	MS.gene43324:CDS
AACTACAGATATTGAAGACA+AGG	0.622864	1.4:-33762126	None:intergenic
AGGCTGATGTAGATAACAGT+GGG	0.651767	1.4:+33761856	MS.gene43324:intron
CAATTAGACTACAACATCAG+AGG	0.656073	1.4:+33760073	MS.gene43324:CDS
TGATTATGGTGAGTTCATTG+CGG	0.658251	1.4:+33761884	MS.gene43324:CDS
TAGGCTGATGTAGATAACAG+TGG	0.668045	1.4:+33761855	MS.gene43324:intron
ATAATGGGCAACAACATCAG+AGG	0.672852	1.4:+33760010	MS.gene43324:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATAATAAATTAAAATTGCA+AGG	+	chr1.4:33760272-33760291	MS.gene43324:intron	10.0%
!!!	TTTTTTGTAAAGATTTAATT+TGG	+	chr1.4:33761194-33761213	MS.gene43324:intron	10.0%
!!	ATCATAAAAATTAAGCAAAT+TGG	-	chr1.4:33760679-33760698	None:intergenic	15.0%
!!	ATTGACAAATTATATACTAA+TGG	+	chr1.4:33761331-33761350	MS.gene43324:intron	15.0%
!!	TGAAGAAATAATTATATAGA+TGG	+	chr1.4:33760972-33760991	MS.gene43324:intron	15.0%
!!!	TTTTTAATGTCTTGATTTTT+TGG	-	chr1.4:33761274-33761293	None:intergenic	15.0%
!!	AAAAATGTTCCAAAATCATA+AGG	-	chr1.4:33761079-33761098	None:intergenic	20.0%
!!	AAACATGTACCTATAAAATA+AGG	-	chr1.4:33761421-33761440	None:intergenic	20.0%
!!	AACATGTACCTATAAAATAA+GGG	-	chr1.4:33761420-33761439	None:intergenic	20.0%
!!	AAGAAATGACATGATTTAAA+TGG	-	chr1.4:33760764-33760783	None:intergenic	20.0%
!!	AATTTATGATTTAATGCAAG+CGG	+	chr1.4:33761663-33761682	MS.gene43324:intron	20.0%
!!	ATCTTTATCAAAGTAAGAAA+AGG	-	chr1.4:33761958-33761977	None:intergenic	20.0%
!!	GAAAAGTTATCTTCAATTTA+AGG	+	chr1.4:33761014-33761033	MS.gene43324:intron	20.0%
!!	TCAATTATTTGTTCCTAAAT+AGG	+	chr1.4:33760878-33760897	MS.gene43324:intron	20.0%
!!!	AGTAGTTATGATTTGTTATT+CGG	-	chr1.4:33761532-33761551	None:intergenic	20.0%
!!!	AGTATATAATTTGTCAATGT+TGG	-	chr1.4:33761329-33761348	None:intergenic	20.0%
!!!	ATAATAAGACCTTATGATTT+TGG	+	chr1.4:33761067-33761086	MS.gene43324:intron	20.0%
!!!	ATTTTGTAAAAGACCTATTT+AGG	-	chr1.4:33760894-33760913	None:intergenic	20.0%
!!!	GTATATAATTTGTCAATGTT+GGG	-	chr1.4:33761328-33761347	None:intergenic	20.0%
!!!	GTCTTTTACAAAATTTCATA+TGG	+	chr1.4:33760900-33760919	MS.gene43324:intron	20.0%
!!!	TTGAACATTTCTTTTAATCT+TGG	-	chr1.4:33761579-33761598	None:intergenic	20.0%
!!!	TTTTCTTACTTTGATAAAGA+TGG	+	chr1.4:33761957-33761976	MS.gene43324:CDS	20.0%
!	AAAAAACCTTGAAATGTGAT+TGG	+	chr1.4:33760431-33760450	MS.gene43324:intron	25.0%
!	AAAATTAAGCAAATTGGTTG+TGG	-	chr1.4:33760673-33760692	None:intergenic	25.0%
!	AAAGCAATTGAAATACATGT+TGG	+	chr1.4:33760457-33760476	MS.gene43324:intron	25.0%
!	AACATGTATTTCAATTGCTT+TGG	-	chr1.4:33760458-33760477	None:intergenic	25.0%
!	AAGCAATTGAAATACATGTT+GGG	+	chr1.4:33760458-33760477	MS.gene43324:intron	25.0%
!	AAGTGTACATTTCAATAAGA+AGG	-	chr1.4:33760124-33760143	None:intergenic	25.0%
!	ACAACTCAAGTATAAAACAT+GGG	+	chr1.4:33761364-33761383	MS.gene43324:intron	25.0%
!	ATAAATGCCTTTACTGTAAT+TGG	+	chr1.4:33760810-33760829	MS.gene43324:intron	25.0%
!	ATACTTGTCATCAAATTGAT+TGG	+	chr1.4:33760234-33760253	MS.gene43324:intron	25.0%
!	ATATCCAGGAAATTAACATA+AGG	+	chr1.4:33760397-33760416	MS.gene43324:intron	25.0%
!	ATTGAAATGTACACTTGAAA+AGG	+	chr1.4:33760128-33760147	MS.gene43324:intron	25.0%
!	CACCAAATGTTTATAAAGTA+TGG	+	chr1.4:33761388-33761407	MS.gene43324:intron	25.0%
!	GTTAATGTGTTCTATTTAAC+AGG	+	chr1.4:33761792-33761811	MS.gene43324:intron	25.0%
!	TAAAGTTGTTGCTAATCTTA+AGG	+	chr1.4:33761633-33761652	MS.gene43324:intron	25.0%
!	TACTTGTCATCAAATTGATT+GGG	+	chr1.4:33760235-33760254	MS.gene43324:intron	25.0%
!	TATATACTAATGGAACTCAT+GGG	+	chr1.4:33761341-33761360	MS.gene43324:intron	25.0%
!	TATCCAGGAAATTAACATAA+GGG	+	chr1.4:33760398-33760417	MS.gene43324:intron	25.0%
!	TGCCATACTTTATAAACATT+TGG	-	chr1.4:33761393-33761412	None:intergenic	25.0%
!	TTATATACTAATGGAACTCA+TGG	+	chr1.4:33761340-33761359	MS.gene43324:intron	25.0%
!	TTATGATAAAAATAGGACAG+AGG	-	chr1.4:33760165-33760184	None:intergenic	25.0%
!	TTCTAATCCAATTACAGTAA+AGG	-	chr1.4:33760820-33760839	None:intergenic	25.0%
!	TTGAAATGTACACTTGAAAA+GGG	+	chr1.4:33760129-33760148	MS.gene43324:intron	25.0%
!!	GACAAGTATTTTTCTAATAC+TGG	-	chr1.4:33760223-33760242	None:intergenic	25.0%
	AACTACAGATATTGAAGACA+AGG	-	chr1.4:33762129-33762148	None:intergenic	30.0%
	ACTTGTCATCAAATTGATTG+GGG	+	chr1.4:33760236-33760255	MS.gene43324:intron	30.0%
	ATCAAATTGATTGGGGAAAA+AGG	+	chr1.4:33760243-33760262	MS.gene43324:intron	30.0%
	CAAAGAAATCGATGAAGATA+AGG	+	chr1.4:33762061-33762080	MS.gene43324:CDS	30.0%
	GACAACTCAAGTATAAAACA+TGG	+	chr1.4:33761363-33761382	MS.gene43324:intron	30.0%
	GGTATGTAAGTATTCCATTA+CGG	-	chr1.4:33761487-33761506	None:intergenic	30.0%
	TACTTTGATAAAGATGGAAG+TGG	+	chr1.4:33761963-33761982	MS.gene43324:CDS	30.0%
	TCACTATACCTTGAAATTGT+AGG	+	chr1.4:33761836-33761855	MS.gene43324:intron	30.0%
	TGTAAAGAGATAGTTAGTCA+CGG	-	chr1.4:33760857-33760876	None:intergenic	30.0%
!	TTAAACACTTTAGAAGAACC+TGG	-	chr1.4:33760514-33760533	None:intergenic	30.0%
!!	CTAATACTGGTTTAAGTTGT+GGG	-	chr1.4:33760210-33760229	None:intergenic	30.0%
!!	TCTAATACTGGTTTAAGTTG+TGG	-	chr1.4:33760211-33760230	None:intergenic	30.0%
	AAATACATGTTGGGCTATGT+CGG	+	chr1.4:33760467-33760486	MS.gene43324:intron	35.0%
	AACAGTGGGACAATTGATTA+TGG	+	chr1.4:33761870-33761889	MS.gene43324:CDS	35.0%
	AAGAAAGAGACGAAAAACTC+AGG	-	chr1.4:33760046-33760065	None:intergenic	35.0%
	AAGTTCAAACACACATATCC+AGG	+	chr1.4:33760383-33760402	MS.gene43324:intron	35.0%
	ACATTGTTGGAGATTCTATG+TGG	-	chr1.4:33761303-33761322	None:intergenic	35.0%
	ATCGATGAAGATAAGGTAAG+TGG	+	chr1.4:33762068-33762087	MS.gene43324:CDS	35.0%
	CAATTAGACTACAACATCAG+AGG	+	chr1.4:33760073-33760092	MS.gene43324:CDS	35.0%
	CAGACATATGACATTAACGT+CGG	+	chr1.4:33761553-33761572	MS.gene43324:intron	35.0%
	GAAGAGGCTACAAAGATAAT+GGG	+	chr1.4:33759995-33760014	MS.gene43324:CDS	35.0%
	GGAAAGTTAAGATGTGCAAA+TGG	+	chr1.4:33761718-33761737	MS.gene43324:intron	35.0%
	GTTAAGATGTGCAAATGGAA+TGG	+	chr1.4:33761723-33761742	MS.gene43324:intron	35.0%
	TAATGCAAGCGGTAAGTATA+AGG	+	chr1.4:33761674-33761693	MS.gene43324:intron	35.0%
	TACATCAGCCTACAATTTCA+AGG	-	chr1.4:33761847-33761866	None:intergenic	35.0%
	TGAAGACAAGGTAGCTAAAA+AGG	-	chr1.4:33762117-33762136	None:intergenic	35.0%
	TGAAGAGGCTACAAAGATAA+TGG	+	chr1.4:33759994-33760013	MS.gene43324:CDS	35.0%
	TGACATGATTTAAATGGAGC+AGG	-	chr1.4:33760758-33760777	None:intergenic	35.0%
	TGATTATGGTGAGTTCATTG+CGG	+	chr1.4:33761884-33761903	MS.gene43324:CDS	35.0%
	TTGCCCTTATGTTAATTTCC+TGG	-	chr1.4:33760404-33760423	None:intergenic	35.0%
	TTTGGACCAATCACATTTCA+AGG	-	chr1.4:33760440-33760459	None:intergenic	35.0%
!	TAAGGTGGATGATTTGCAAA+TGG	+	chr1.4:33761692-33761711	MS.gene43324:intron	35.0%
!	TGGATGATTTGCAAATGGAA+TGG	+	chr1.4:33761697-33761716	MS.gene43324:intron	35.0%
	AAGAAGGTGAAACTCATACG+AGG	-	chr1.4:33760108-33760127	None:intergenic	40.0%
	AATACATGTTGGGCTATGTC+GGG	+	chr1.4:33760468-33760487	MS.gene43324:intron	40.0%
	AGAAGGTGAAACTCATACGA+GGG	-	chr1.4:33760107-33760126	None:intergenic	40.0%
	AGACTTCTGAACTACCGTAA+TGG	+	chr1.4:33761470-33761489	MS.gene43324:intron	40.0%
	AGGCTGATGTAGATAACAGT+GGG	+	chr1.4:33761856-33761875	MS.gene43324:intron	40.0%
	AGTAATCCACCCAAAAGTCA+AGG	+	chr1.4:33760299-33760318	MS.gene43324:intron	40.0%
	ATCTTTGTAGCCTCTTCAAC+AGG	-	chr1.4:33759992-33760011	None:intergenic	40.0%
	GATGTGCAAATGGAATGGAA+TGG	+	chr1.4:33761728-33761747	MS.gene43324:intron	40.0%
	GTTATTCGGAGCGATTAAAG+AGG	-	chr1.4:33761518-33761537	None:intergenic	40.0%
	TAGGCTGATGTAGATAACAG+TGG	+	chr1.4:33761855-33761874	MS.gene43324:intron	40.0%
	TCAATGTTGGGTGACATTGT+TGG	-	chr1.4:33761316-33761335	None:intergenic	40.0%
	TGTACACTTGAAAAGGGATC+TGG	+	chr1.4:33760135-33760154	MS.gene43324:intron	40.0%
!	GTCTTGTGTCCTTGACTTTT+GGG	-	chr1.4:33760311-33760330	None:intergenic	40.0%
!	TGTCTTGTGTCCTTGACTTT+TGG	-	chr1.4:33760312-33760331	None:intergenic	40.0%
!!	ATAATGGGCAACAACATCAG+AGG	+	chr1.4:33760010-33760029	MS.gene43324:CDS	40.0%
!!!	GGCACACACCCTTATTTTAT+AGG	+	chr1.4:33761409-33761428	MS.gene43324:intron	40.0%
	CAACAAGCTTGCGATGAGTT+TGG	+	chr1.4:33762008-33762027	MS.gene43324:CDS	45.0%
	GCGATTAAAGAGGAAGGAAG+AGG	-	chr1.4:33761508-33761527	None:intergenic	45.0%
	GGATGATGATCCTGTTGAAG+AGG	+	chr1.4:33759979-33759998	MS.gene43324:CDS	45.0%
	TGCAAGCGGTAAGTATAAGG+TGG	+	chr1.4:33761677-33761696	MS.gene43324:intron	45.0%
	TGGGCTATGTCGGGTTATAT+TGG	+	chr1.4:33760477-33760496	MS.gene43324:intron	45.0%
	TTCGGAGCGATTAAAGAGGA+AGG	-	chr1.4:33761514-33761533	None:intergenic	45.0%
	TTGTGAGATGACGACGTTGA+AGG	+	chr1.4:33761235-33761254	MS.gene43324:intron	45.0%
!	TTGTGTCCTTGACTTTTGGG+TGG	-	chr1.4:33760308-33760327	None:intergenic	45.0%
!!	AATAATATTATGATAAAAAT+AGG	-	chr1.4:33760172-33760191	None:intergenic	5.0%
!!!	AATTTTTATGATTTATTAAA+CGG	+	chr1.4:33760687-33760706	MS.gene43324:intron	5.0%
	GTCGGGTTATATTGGAGAGC+CGG	+	chr1.4:33760485-33760504	MS.gene43324:intron	50.0%
	TCGGGTTATATTGGAGAGCC+GGG	+	chr1.4:33760486-33760505	MS.gene43324:intron	50.0%
!	CTTTAGAAGAACCTGGTCCC+CGG	-	chr1.4:33760507-33760526	None:intergenic	50.0%
	CGGGTTATATTGGAGAGCCG+GGG	+	chr1.4:33760487-33760506	MS.gene43324:intron	55.0%
	ATATTGGAGAGCCGGGGACC+AGG	+	chr1.4:33760493-33760512	MS.gene43324:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	33759977	33762172	33759977	ID=MS.gene43324
chr1.4	mRNA	33759977	33762172	33759977	ID=MS.gene43324.t1;Parent=MS.gene43324
chr1.4	exon	33759977	33760108	33759977	ID=MS.gene43324.t1.exon1;Parent=MS.gene43324.t1
chr1.4	CDS	33759977	33760108	33759977	ID=cds.MS.gene43324.t1;Parent=MS.gene43324.t1
chr1.4	exon	33761858	33762172	33761858	ID=MS.gene43324.t1.exon2;Parent=MS.gene43324.t1
chr1.4	CDS	33761858	33762172	33761858	ID=cds.MS.gene43324.t1;Parent=MS.gene43324.t1

Gene Sequence

>MS.gene43324

ATGGATGATGATCCTGTTGAAGAGGCTACAAAGATAATGGGCAACAACATCAGAGGCTGCAACTCTCCTGAGTTTTTCGTCTCTTTCTTCACTTCACAATTAGACTACAACATCAGAGGCTGCAACACCCTCGTATGAGTTTCACCTTCTTATTGAAATGTACACTTGAAAAGGGATCTGGTTAACCTCTGTCCTATTTTTATCATAATATTATTTGTTATTTTCTTATTCCCACAACTTAAACCAGTATTAGAAAAATACTTGTCATCAAATTGATTGGGGAAAAAGGACAAAGAATAATAAATTAAAATTGCAAGGAAAAAGTAATCCACCCAAAAGTCAAGGACACAAGACACAAGAAGCATCTAAGACAAATGAAATATGACTTCACTAAAGTAGAGCTTCAAAGTTCAAACACACATATCCAGGAAATTAACATAAGGGCAAATGAATAAAAAAACCTTGAAATGTGATTGGTCCAAAGCAATTGAAATACATGTTGGGCTATGTCGGGTTATATTGGAGAGCCGGGGACCAGGTTCTTCTAAAGTGTTTAACTCGTCTCAGAGTAAGAGAACAAAGTGATAAATATTAACTATGTATGAATAAATTAACTGTTGATATTATATGCATGTGTATAATAAATCACGATTCGTGACTTTAATTTGTATAATGTTTGTTAACAATTTAATACCACAACCAATTTGCTTAATTTTTATGATTTATTAAACGGCGTCTAATATTTAAAGACAAAGATAGTGTAACATTTTTTGTGCAACCTGCTCCATTTAAATCATGTCATTTCTTTTAAACAAAGTAAAAAATTATATTAGATAAATGCCTTTACTGTAATTGGATTAGAAATATATTACATCATCCGTGACTAACTATCTCTTTACAATCAATTATTTGTTCCTAAATAGGTCTTTTACAAAATTTCATATGGATTAATTTATTTATAAACTAAATGAATCTTGTCTCTTAAGAAAAATTGTTGAAGAAATAATTATATAGATGGATAAATATTTTAAACTAACGAAAAGTTATCTTCAATTTAAGGATATTTTGCTAACAAAACGAAAAATTACACATAATAAGACCTTATGATTTTGGAACATTTTTTTTTTAATTCAACATTCACTCTTTTATTTGATAAACTCAAAAATGAGTTAGCACTATTCATGAAGATATTACATTATGCACATAGTTTTTTTTTTTTTTTTGTAAAGATTTAATTTGGTTTTGATATATTTTGTCATTGTGAGATGACGACGTTGAAGGCGATTCTACGTGACCAAAAAATCAAGACATTAAAAAATGTATCCACATAGAATCTCCAACAATGTCACCCAACATTGACAAATTATATACTAATGGAACTCATGGGACAACTCAAGTATAAAACATGGGTCACCAAATGTTTATAAAGTATGGCACACACCCTTATTTTATAGGTACATGTTTGTCTATGTTGTTTACAAACTTTCGATGTGAGACTTCTGAACTACCGTAATGGAATACTTACATACCTCTTCCTTCCTCTTTAATCGCTCCGAATAACAAATCATAACTACTGCAGACATATGACATTAACGTCGGCCAAGATTAAAAGAAATGTTCAAGATGATAGATACAGATAACAACTTTTGAAGAACTTAAAGTTGTTGCTAATCTTAAGGAGTGTAAAATTTATGATTTAATGCAAGCGGTAAGTATAAGGTGGATGATTTGCAAATGGAATGGAAAGTTAAGATGTGCAAATGGAATGGAATGGAAATTTATGATTTAAAATTTATCATAGATTCACAACAATAAGTTAATGTGTTCTATTTAACAGGCTAACTCAAATCTCTAACATATCACTATACCTTGAAATTGTAGGCTGATGTAGATAACAGTGGGACAATTGATTATGGTGAGTTCATTGCGGCAACATTGCATCTTAACAAGATTGAAAGAGAAGATCATCTATTTGCAGCCTTTTCTTACTTTGATAAAGATGGAAGTGGCTATATTACTCAAGAAGAACTTCAACAAGCTTGCGATGAGTTTGGCATTAAAGATGTTCGCTTAGAAGAGATAATCAAAGAAATCGATGAAGATAAGGTAAGTGGTCTTAATTGTTTGACTTTGTTATCCTTTTTAGCTACCTTGTCTTCAATATCTGTAGTTTACAACACTATTACTGACACATAG

Protein sequence

>MS.gene43324.t1

MDDDPVEEATKIMGNNIRGCNSPEFFVSFFTSQLDYNIRGCNTLADVDNSGTIDYGEFIAATLHLNKIEREDHLFAAFSYFDKDGSGYITQEELQQACDEFGIKDVRLEEIIKEIDEDKVSGLNCLTLLSFLATLSSISVVYNTITDT