Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049208.t1 | XP_013461634.1 | 93.9 | 456 | 27 | 1 | 1 | 456 | 1 | 455 | 3.00E-218 | 767.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049208.t1 | Q9FGN8 | 53.1 | 130 | 61 | 0 | 117 | 246 | 304 | 433 | 2.6e-32 | 141.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049208.t1 | A0A072V0W9 | 93.9 | 456 | 27 | 1 | 1 | 456 | 1 | 455 | 2.2e-218 | 767.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049178 | MS.gene049208 | 0.81566 | 8.25E-52 | -1.69E-46 |
| MS.gene049208 | MS.gene051676 | 0.805375 | 1.38E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene051975 | 0.804227 | 2.39E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene05469 | 0.80914 | 2.19E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene055311 | 0.902497 | 9.13E-79 | -1.69E-46 |
| MS.gene049208 | MS.gene055313 | 0.91087 | 1.15E-82 | -1.69E-46 |
| MS.gene049208 | MS.gene055314 | 0.893837 | 4.33E-75 | -1.69E-46 |
| MS.gene049208 | MS.gene056181 | 0.804676 | 1.93E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene056787 | 0.802855 | 4.60E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene057360 | 0.830112 | 3.53E-55 | -1.69E-46 |
| MS.gene049208 | MS.gene058639 | 0.807063 | 6.07E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene058758 | 0.809296 | 2.03E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene059171 | 0.815059 | 1.12E-51 | -1.69E-46 |
| MS.gene049208 | MS.gene059227 | 0.800255 | 1.57E-48 | -1.69E-46 |
| MS.gene049208 | MS.gene060869 | 0.814888 | 1.22E-51 | -1.69E-46 |
| MS.gene049208 | MS.gene060870 | 0.804394 | 2.21E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene061958 | 0.806825 | 6.82E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene061966 | 0.813604 | 2.35E-51 | -1.69E-46 |
| MS.gene049208 | MS.gene06322 | 0.894382 | 2.60E-75 | -1.69E-46 |
| MS.gene049208 | MS.gene06324 | 0.909535 | 5.12E-82 | -1.69E-46 |
| MS.gene049208 | MS.gene065513 | 0.800208 | 1.61E-48 | -1.69E-46 |
| MS.gene049208 | MS.gene07088 | 0.834669 | 2.62E-56 | -1.69E-46 |
| MS.gene049208 | MS.gene072424 | 0.815416 | 9.35E-52 | -1.69E-46 |
| MS.gene049208 | MS.gene072700 | 0.802204 | 6.27E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene072740 | 0.800959 | 1.13E-48 | -1.69E-46 |
| MS.gene049208 | MS.gene07339 | 0.834016 | 3.82E-56 | -1.69E-46 |
| MS.gene049208 | MS.gene074000 | 0.812123 | 4.97E-51 | -1.69E-46 |
| MS.gene049208 | MS.gene07608 | 0.835782 | 1.37E-56 | -1.69E-46 |
| MS.gene049208 | MS.gene08889 | 0.803622 | 3.19E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene09852 | 0.804074 | 2.57E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene20621 | 0.804891 | 1.74E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene20886 | 0.834272 | 3.30E-56 | -1.69E-46 |
| MS.gene049208 | MS.gene23513 | 0.815311 | 9.87E-52 | -1.69E-46 |
| MS.gene049208 | MS.gene23935 | 0.808501 | 3.00E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene25599 | 0.820502 | 6.63E-53 | -1.69E-46 |
| MS.gene049208 | MS.gene26426 | 0.83288 | 7.34E-56 | -1.69E-46 |
| MS.gene049208 | MS.gene26567 | 0.807395 | 5.16E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene26974 | 0.817055 | 4.02E-52 | -1.69E-46 |
| MS.gene049208 | MS.gene28491 | 0.800363 | 1.49E-48 | -1.69E-46 |
| MS.gene049208 | MS.gene28924 | 0.821051 | 4.96E-53 | -1.69E-46 |
| MS.gene049208 | MS.gene29229 | 0.822779 | 1.97E-53 | -1.69E-46 |
| MS.gene049208 | MS.gene31196 | 0.808551 | 2.93E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene31625 | 0.83192 | 1.27E-55 | -1.69E-46 |
| MS.gene049208 | MS.gene32043 | 0.819 | 1.46E-52 | -1.69E-46 |
| MS.gene049208 | MS.gene33135 | 0.807139 | 5.85E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene35034 | 0.821089 | 4.86E-53 | -1.69E-46 |
| MS.gene049208 | MS.gene37236 | 0.804448 | 2.15E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene37653 | 0.822855 | 1.89E-53 | -1.69E-46 |
| MS.gene049208 | MS.gene37876 | 0.828565 | 8.38E-55 | -1.69E-46 |
| MS.gene049208 | MS.gene38261 | 0.809791 | 1.59E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene38262 | 0.808427 | 3.11E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene40220 | 0.803639 | 3.17E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene40969 | 0.888253 | 6.95E-73 | -1.69E-46 |
| MS.gene049208 | MS.gene41088 | 0.824321 | 8.60E-54 | -1.69E-46 |
| MS.gene049208 | MS.gene41630 | 0.821354 | 4.22E-53 | -1.69E-46 |
| MS.gene049208 | MS.gene42128 | 0.806399 | 8.38E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene43324 | 0.812193 | 4.80E-51 | -1.69E-46 |
| MS.gene049208 | MS.gene46392 | 0.839351 | 1.67E-57 | -1.69E-46 |
| MS.gene049208 | MS.gene47554 | 0.809749 | 1.62E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene47822 | 0.817301 | 3.54E-52 | -1.69E-46 |
| MS.gene049208 | MS.gene48256 | 0.807612 | 4.64E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene49772 | 0.822157 | 2.75E-53 | -1.69E-46 |
| MS.gene049208 | MS.gene49777 | 0.807544 | 4.80E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene50004 | 0.805706 | 1.17E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene50005 | 0.815017 | 1.15E-51 | -1.69E-46 |
| MS.gene049208 | MS.gene50013 | 0.807697 | 4.45E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene50365 | 0.807612 | 4.64E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene51028 | 0.807812 | 4.21E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene51920 | 0.81349 | 2.49E-51 | -1.69E-46 |
| MS.gene049208 | MS.gene54322 | 0.800453 | 1.43E-48 | -1.69E-46 |
| MS.gene049208 | MS.gene54547 | 0.820684 | 6.02E-53 | -1.69E-46 |
| MS.gene049208 | MS.gene54766 | 0.805756 | 1.14E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene56039 | 0.820381 | 7.07E-53 | -1.69E-46 |
| MS.gene049208 | MS.gene56565 | 0.803731 | 3.03E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene58134 | 0.807861 | 4.11E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene58227 | 0.804753 | 1.86E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene60144 | 0.803456 | 3.46E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene61257 | 0.813183 | 2.91E-51 | -1.69E-46 |
| MS.gene049208 | MS.gene65300 | 0.812452 | 4.21E-51 | -1.69E-46 |
| MS.gene049208 | MS.gene66476 | 0.819077 | 1.40E-52 | -1.69E-46 |
| MS.gene049208 | MS.gene67107 | 0.828167 | 1.04E-54 | -1.69E-46 |
| MS.gene049208 | MS.gene67553 | 0.81606 | 6.72E-52 | -1.69E-46 |
| MS.gene049208 | MS.gene69097 | 0.815152 | 1.07E-51 | -1.69E-46 |
| MS.gene049208 | MS.gene70112 | 0.823767 | 1.16E-53 | -1.69E-46 |
| MS.gene049208 | MS.gene70282 | 0.810597 | 1.07E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene70325 | 0.811943 | 5.44E-51 | -1.69E-46 |
| MS.gene049208 | MS.gene72376 | 0.806452 | 8.17E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene73462 | 0.801943 | 7.09E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene74900 | 0.835895 | 1.29E-56 | -1.69E-46 |
| MS.gene049208 | MS.gene75412 | 0.81593 | 7.18E-52 | -1.69E-46 |
| MS.gene049208 | MS.gene75781 | 0.832172 | 1.10E-55 | -1.69E-46 |
| MS.gene049208 | MS.gene78314 | 0.823373 | 1.43E-53 | -1.69E-46 |
| MS.gene049208 | MS.gene79280 | 0.806246 | 9.03E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene81285 | 0.817588 | 3.05E-52 | -1.69E-46 |
| MS.gene049208 | MS.gene82600 | 0.809609 | 1.74E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene87972 | 0.840365 | 9.09E-58 | -1.69E-46 |
| MS.gene049208 | MS.gene91267 | 0.808187 | 3.50E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene91524 | 0.803636 | 3.17E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene93985 | 0.803023 | 4.25E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene94183 | 0.800843 | 1.19E-48 | -1.69E-46 |
| MS.gene049208 | MS.gene95469 | 0.807036 | 6.15E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene95562 | 0.813254 | 2.81E-51 | -1.69E-46 |
| MS.gene049208 | MS.gene97030 | 0.803104 | 4.09E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene99533 | 0.800649 | 1.31E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049208.t1 | MTR_3g097570 | 96.930 | 456 | 13 | 1 | 1 | 456 | 1 | 455 | 0.0 | 912 |
| MS.gene049208.t1 | MTR_8g446550 | 42.254 | 213 | 109 | 3 | 107 | 316 | 321 | 522 | 9.65e-45 | 166 |
| MS.gene049208.t1 | MTR_7g105920 | 46.354 | 192 | 95 | 4 | 108 | 292 | 265 | 455 | 5.53e-43 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049208.t1 | AT5G23610 | 37.466 | 371 | 200 | 6 | 108 | 452 | 124 | 488 | 1.75e-76 | 248 |
| MS.gene049208.t1 | AT5G23610 | 37.366 | 372 | 200 | 6 | 108 | 452 | 124 | 489 | 2.20e-76 | 247 |
| MS.gene049208.t1 | AT5G51330 | 54.483 | 145 | 66 | 0 | 107 | 251 | 294 | 438 | 1.73e-44 | 165 |
| MS.gene049208.t1 | AT5G51330 | 54.483 | 145 | 66 | 0 | 107 | 251 | 290 | 434 | 1.75e-44 | 165 |
Find 133 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTGCAGGAGATGTTTA+TGG | 0.210272 | 3.3:+80688668 | MS.gene049208:intron |
| CAACTCGTTGATAATGTTTC+AGG | 0.243745 | 3.3:+80688569 | MS.gene049208:CDS |
| TTACTATCTGGAAAATATAT+TGG | 0.261036 | 3.3:-80686931 | None:intergenic |
| AAGTTCAGTACTTCTTCATT+TGG | 0.283704 | 3.3:-80687613 | None:intergenic |
| CTTAGTACAGGTCGGGTTAT+TGG | 0.284312 | 3.3:-80687305 | None:intergenic |
| CGTAAATACATCGGTGATAC+TGG | 0.287030 | 3.3:+80687338 | MS.gene049208:CDS |
| TCCCTCCAGGTGCCACTTTA+CGG | 0.303889 | 3.3:-80687391 | None:intergenic |
| GTTCAACCCTGACGGAATTA+TGG | 0.307173 | 3.3:+80687433 | MS.gene049208:CDS |
| CAGTATCACCGATGTATTTA+CGG | 0.324775 | 3.3:-80687337 | None:intergenic |
| GATGACGTCCGCGAGGAGGC+TGG | 0.343634 | 3.3:+80687482 | MS.gene049208:CDS |
| CATCGTCAACAGGCATTCAT+TGG | 0.346643 | 3.3:+80686823 | MS.gene049208:CDS |
| TGAAGTGGAGCAACATCTTA+TGG | 0.347796 | 3.3:+80688080 | MS.gene049208:CDS |
| GTATATTAACAGGGCAAGTA+TGG | 0.358640 | 3.3:+80688036 | MS.gene049208:intron |
| GGATACCACCATCCACTGTT+AGG | 0.358688 | 3.3:+80687522 | MS.gene049208:CDS |
| TTAACAGTTGTAGAAGAATC+TGG | 0.359007 | 3.3:-80688528 | None:intergenic |
| GGCCATCCGCGCCCCTTGTC+AGG | 0.360463 | 3.3:+80687544 | MS.gene049208:CDS |
| TCTTCATTGAGTGGCTGAAT+TGG | 0.364573 | 3.3:-80688303 | None:intergenic |
| CCGTCATCCTGAGTATTGTC+TGG | 0.369164 | 3.3:-80688201 | None:intergenic |
| GGTTGATCCTCTTGCATTGT+GGG | 0.373824 | 3.3:-80688495 | None:intergenic |
| GTGGATGGTGGTATCCAATA+GGG | 0.379280 | 3.3:-80687515 | None:intergenic |
| TTAGTACAGGTCGGGTTATT+GGG | 0.379451 | 3.3:-80687304 | None:intergenic |
| CTGGGGTTGATGACCCCTAT+TGG | 0.380387 | 3.3:+80687501 | MS.gene049208:CDS |
| AGTTCAGTACTTCTTCATTT+GGG | 0.387011 | 3.3:-80687612 | None:intergenic |
| GGATTATTTGAAGAATTTGC+AGG | 0.402865 | 3.3:+80687914 | MS.gene049208:CDS |
| GAAGAATCTGGGGTGACATT+AGG | 0.411888 | 3.3:-80688516 | None:intergenic |
| GATGTATCAAACACTGTATA+TGG | 0.414656 | 3.3:+80688732 | MS.gene049208:CDS |
| ATTCAAATGGAAAGAAAAGA+TGG | 0.422345 | 3.3:+80688695 | MS.gene049208:CDS |
| CGTCAGGGTTGAACCATCTT+CGG | 0.426408 | 3.3:-80687424 | None:intergenic |
| AGTGGATGGTGGTATCCAAT+AGG | 0.428009 | 3.3:-80687516 | None:intergenic |
| AGTATGGTGAGTTCGCGATA+TGG | 0.430148 | 3.3:+80688052 | MS.gene049208:CDS |
| GAGAAAGAAGCATGACAGTA+AGG | 0.439317 | 3.3:+80687101 | MS.gene049208:CDS |
| GAAACTGCTTAAAATAGAAA+TGG | 0.441793 | 3.3:+80687589 | MS.gene049208:CDS |
| AGGATGACGGATTGGCAACT+TGG | 0.448641 | 3.3:+80688214 | MS.gene049208:CDS |
| TGTTTATGGATTTATTCAAA+TGG | 0.448971 | 3.3:+80688682 | MS.gene049208:CDS |
| AGCTGCAGGGATGGATAGGT+GGG | 0.450023 | 3.3:+80686795 | None:intergenic |
| CGGAATTATGGAGTATTGGT+TGG | 0.461416 | 3.3:+80687445 | MS.gene049208:CDS |
| TTTGGATAGCAGAGATATGC+AGG | 0.462744 | 3.3:+80687697 | MS.gene049208:intron |
| CTGACGGAATTATGGAGTAT+TGG | 0.463406 | 3.3:+80687441 | MS.gene049208:CDS |
| GTGGGAGGTGCTGAAGGCAG+AGG | 0.464284 | 3.3:+80687265 | MS.gene049208:CDS |
| ATGACGTCCGCGAGGAGGCT+GGG | 0.464713 | 3.3:+80687483 | MS.gene049208:CDS |
| CAATACTCCATAATTCCGTC+AGG | 0.466213 | 3.3:-80687440 | None:intergenic |
| CAACCGCCTAACTGAAATCA+TGG | 0.467995 | 3.3:+80687893 | MS.gene049208:CDS |
| GTGGGGTGTTCATCGTCAAC+AGG | 0.476341 | 3.3:+80686813 | MS.gene049208:CDS |
| ACCTCAATAAGCTGACCATA+AGG | 0.476397 | 3.3:-80687036 | None:intergenic |
| CTAAAAGTGGTGCAGTCTCT+TGG | 0.476561 | 3.3:-80688135 | None:intergenic |
| AGTATCACCGATGTATTTAC+GGG | 0.476913 | 3.3:-80687336 | None:intergenic |
| AATCTAATGTAGGTACAAAT+CGG | 0.476993 | 3.3:+80687229 | MS.gene049208:intron |
| GAGCTGCAGGGATGGATAGG+TGG | 0.485530 | 3.3:+80686794 | None:intergenic |
| AATAATCCATGATTTCAGTT+AGG | 0.487830 | 3.3:-80687899 | None:intergenic |
| TGGGAGGTGCTGAAGGCAGA+GGG | 0.492323 | 3.3:+80687266 | MS.gene049208:CDS |
| ATCCTGACAAGGGGCGCGGA+TGG | 0.495773 | 3.3:-80687546 | None:intergenic |
| TAACAGTTGTAGAAGAATCT+GGG | 0.496287 | 3.3:-80688527 | None:intergenic |
| AGCTGATCTTAGTACAGGTC+GGG | 0.496477 | 3.3:-80687312 | None:intergenic |
| AGCATGACAGTAAGGATAGA+TGG | 0.497539 | 3.3:+80687109 | MS.gene049208:CDS |
| GGACTGATCGGTTCCGAAGA+TGG | 0.500965 | 3.3:+80687411 | MS.gene049208:CDS |
| GCCTTATGGTCAGCTTATTG+AGG | 0.505640 | 3.3:+80687035 | MS.gene049208:CDS |
| TGACGTCCGCGAGGAGGCTG+GGG | 0.505696 | 3.3:+80687484 | MS.gene049208:CDS |
| AGGTTGATCCTCTTGCATTG+TGG | 0.510835 | 3.3:-80688496 | None:intergenic |
| TTGGTTGGAGAGGGCTGACT+TGG | 0.513352 | 3.3:+80687460 | MS.gene049208:CDS |
| TTAGTCAGTTCTTCATTGAG+TGG | 0.514458 | 3.3:-80688312 | None:intergenic |
| GAGGTGAAAGAGGAGTATGC+TGG | 0.516120 | 3.3:+80687054 | MS.gene049208:CDS |
| GAAGAATCAGCATCCTGACA+AGG | 0.520021 | 3.3:-80687557 | None:intergenic |
| TTAGAGCTGCAGGGATGGAT+AGG | 0.521038 | 3.3:+80686791 | None:intergenic |
| GTCAACAGGCATTCATTGGT+TGG | 0.523113 | 3.3:+80686827 | MS.gene049208:CDS |
| TTCTGTTACTAGGAAGGAAG+AGG | 0.524484 | 3.3:+80686867 | MS.gene049208:CDS |
| GACGGATTGGCAACTTGGAT+AGG | 0.527728 | 3.3:+80688219 | MS.gene049208:CDS |
| CTGAATTGGCATGCCTGAGT+AGG | 0.528503 | 3.3:-80688289 | None:intergenic |
| TTCTACAACTGTTAATTCAA+AGG | 0.528922 | 3.3:+80688536 | MS.gene049208:CDS |
| CAGCATCCTGACAAGGGGCG+CGG | 0.532559 | 3.3:-80687550 | None:intergenic |
| GGTCAATGTGCTTCAGTAAG+TGG | 0.534563 | 3.3:-80687370 | None:intergenic |
| CGGGCAGCTGATCTTAGTAC+AGG | 0.536563 | 3.3:-80687317 | None:intergenic |
| GAAGCTTAGAGAGGTGAAAG+AGG | 0.537563 | 3.3:+80687011 | MS.gene049208:CDS |
| TTGAAATAATAGTCATGTTG+AGG | 0.537928 | 3.3:+80688464 | MS.gene049208:intron |
| CAGCTGATCTTAGTACAGGT+CGG | 0.541011 | 3.3:-80687313 | None:intergenic |
| ACGGATTGGCAACTTGGATA+GGG | 0.541184 | 3.3:+80688220 | MS.gene049208:CDS |
| AAGCATGTGGGAGGTGCTGA+AGG | 0.543073 | 3.3:+80687259 | MS.gene049208:CDS |
| TTTCTTGAAGATCCCTACTC+AGG | 0.547860 | 3.3:+80688276 | MS.gene049208:CDS |
| TCACCTCTCTAAGCTGACTA+AGG | 0.547878 | 3.3:-80686972 | None:intergenic |
| AAAGATGGAGCAGCAGCTGT+TGG | 0.548685 | 3.3:+80688710 | MS.gene049208:CDS |
| TTCTGAAGGAGGACTAAAAG+TGG | 0.548840 | 3.3:-80688148 | None:intergenic |
| GATACCACCATCCACTGTTA+GGG | 0.550025 | 3.3:+80687523 | MS.gene049208:CDS |
| GAAAACTGAAAGTAACATGA+TGG | 0.552332 | 3.3:+80687742 | MS.gene049208:CDS |
| GGAGGTGCTGAAGGCAGAGG+GGG | 0.552568 | 3.3:+80687268 | MS.gene049208:CDS |
| TATGGAGTATTGGTTGGAGA+GGG | 0.553818 | 3.3:+80687451 | MS.gene049208:CDS |
| AGGTGAAAGAGGAGTATGCT+GGG | 0.555325 | 3.3:+80687055 | MS.gene049208:CDS |
| CGGAACCGATCAGTCCCTCC+AGG | 0.556285 | 3.3:-80687404 | None:intergenic |
| CTCTAAGCTGACTAAGGCTG+AGG | 0.562519 | 3.3:-80686966 | None:intergenic |
| GCAGGAGCTCATTGCCCAGA+AGG | 0.562853 | 3.3:+80687715 | MS.gene049208:CDS |
| AGACTTGCAAGGAACTTATG+AGG | 0.563012 | 3.3:+80687853 | MS.gene049208:CDS |
| AAGAACTGACTAACAAGAAG+AGG | 0.565105 | 3.3:+80688322 | MS.gene049208:CDS |
| AATCCATGATTTCAGTTAGG+CGG | 0.566073 | 3.3:-80687896 | None:intergenic |
| GAAGCACATTGACCGTAAAG+TGG | 0.570384 | 3.3:+80687379 | MS.gene049208:CDS |
| TGAATTGGCATGCCTGAGTA+GGG | 0.572022 | 3.3:-80688288 | None:intergenic |
| CGGATGGCCCTAACAGTGGA+TGG | 0.572890 | 3.3:-80687530 | None:intergenic |
| CGCGATATGGAAAACTGAAG+TGG | 0.573314 | 3.3:+80688065 | MS.gene049208:CDS |
| TCAGCTTATTGAGGTGAAAG+AGG | 0.574832 | 3.3:+80687044 | MS.gene049208:CDS |
| TGGCACCTGGAGGGACTGAT+CGG | 0.577271 | 3.3:+80687399 | MS.gene049208:CDS |
| CGTCATCCTGAGTATTGTCT+GGG | 0.578265 | 3.3:-80688200 | None:intergenic |
| CGAAGATGGTTCAACCCTGA+CGG | 0.579824 | 3.3:+80687425 | MS.gene049208:CDS |
| TACTAGGAAGGAAGAGGACT+CGG | 0.580045 | 3.3:+80686873 | MS.gene049208:CDS |
| CTTGGATGACGTCCGCGAGG+AGG | 0.584682 | 3.3:+80687478 | MS.gene049208:CDS |
| CAATACTCAGGATGACGGAT+TGG | 0.588917 | 3.3:+80688206 | MS.gene049208:CDS |
| GGCGCGGATGGCCCTAACAG+TGG | 0.589400 | 3.3:-80687534 | None:intergenic |
| TCTTCAAGAAAACACTCTTG+TGG | 0.592785 | 3.3:-80688264 | None:intergenic |
| TCTTCCTTCCTAGTAACAGA+AGG | 0.594292 | 3.3:-80686865 | None:intergenic |
| TTATGGAGTATTGGTTGGAG+AGG | 0.594798 | 3.3:+80687450 | MS.gene049208:CDS |
| ACCGTAAAGTGGCACCTGGA+GGG | 0.600671 | 3.3:+80687390 | MS.gene049208:CDS |
| GAGGTGAAAGAGGAGCCTTA+TGG | 0.602537 | 3.3:+80687021 | MS.gene049208:CDS |
| AGGATAGATGGTCAAGCGAG+AGG | 0.602598 | 3.3:+80687121 | MS.gene049208:CDS |
| CAGCCTTAGTCAGCTTAGAG+AGG | 0.603304 | 3.3:+80686969 | MS.gene049208:CDS |
| CACTAACCCAGACAATACTC+AGG | 0.613204 | 3.3:+80688194 | MS.gene049208:CDS |
| AAGAATCAGCATCCTGACAA+GGG | 0.613306 | 3.3:-80687556 | None:intergenic |
| ATTGACCGTAAAGTGGCACC+TGG | 0.626391 | 3.3:+80687386 | MS.gene049208:CDS |
| CTTGCAAGGAACTTATGAGG+TGG | 0.626578 | 3.3:+80687856 | MS.gene049208:CDS |
| GCTGATACCCACAATGCAAG+AGG | 0.632260 | 3.3:+80688488 | MS.gene049208:CDS |
| AATCGGCTGAACAAAGCATG+TGG | 0.637079 | 3.3:+80687246 | MS.gene049208:CDS |
| CCAGACAATACTCAGGATGA+CGG | 0.639358 | 3.3:+80688201 | MS.gene049208:CDS |
| AACAGTTGTAGAAGAATCTG+GGG | 0.639407 | 3.3:-80688526 | None:intergenic |
| TGGATGGTGGTATCCAATAG+GGG | 0.643639 | 3.3:-80687514 | None:intergenic |
| ATCGGCTGAACAAAGCATGT+GGG | 0.648916 | 3.3:+80687247 | MS.gene049208:CDS |
| GTCTTGTGAGAAGCTTAGAG+AGG | 0.651620 | 3.3:+80687002 | MS.gene049208:CDS |
| GGCTGAACAAAGCATGTGGG+AGG | 0.654214 | 3.3:+80687250 | MS.gene049208:CDS |
| AGAATCAGCATCCTGACAAG+GGG | 0.654977 | 3.3:-80687555 | None:intergenic |
| AACTGAAAGTAACATGATGG+AGG | 0.656525 | 3.3:+80687745 | MS.gene049208:CDS |
| TCAGCTGCCCGTAAATACAT+CGG | 0.660244 | 3.3:+80687329 | MS.gene049208:CDS |
| CATCAACCCCAGCCTCCTCG+CGG | 0.661718 | 3.3:-80687490 | None:intergenic |
| GGGAGGTGCTGAAGGCAGAG+GGG | 0.662463 | 3.3:+80687267 | MS.gene049208:CDS |
| GACCGTAAAGTGGCACCTGG+AGG | 0.665408 | 3.3:+80687389 | MS.gene049208:CDS |
| ATGGCCCTAACAGTGGATGG+TGG | 0.681440 | 3.3:-80687527 | None:intergenic |
| AATACTCCATAATTCCGTCA+GGG | 0.681790 | 3.3:-80687439 | None:intergenic |
| TCAATGGCAGAAGACTTGCA+AGG | 0.688837 | 3.3:+80687842 | MS.gene049208:intron |
| GCTGCAGGGATGGATAGGTG+GGG | 0.693071 | 3.3:+80686796 | None:intergenic |
| TGACTTGGATGACGTCCGCG+AGG | 0.712793 | 3.3:+80687475 | MS.gene049208:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAGATCATGAATATA+AGG | - | chr3.3:80688648-80688667 | None:intergenic | 15.0% |
| !! | ATTAACTCTATATAATTACT+TGG | - | chr3.3:80687204-80687223 | None:intergenic | 15.0% |
| !! | GTATATATTCAAGATTTAAT+GGG | + | chr3.3:80687936-80687955 | MS.gene049208:intron | 15.0% |
| !!! | TGAATGCTTTAATATTTTAA+TGG | + | chr3.3:80687775-80687794 | MS.gene049208:intron | 15.0% |
| !!! | TTTTTCCTAATCATTTTATT+TGG | + | chr3.3:80687679-80687698 | MS.gene049208:intron | 15.0% |
| !! | GGTATATATTCAAGATTTAA+TGG | + | chr3.3:80687935-80687954 | MS.gene049208:intron | 20.0% |
| !! | TGTTTATGGATTTATTCAAA+TGG | + | chr3.3:80688682-80688701 | MS.gene049208:CDS | 20.0% |
| !! | TTACTATCTGGAAAATATAT+TGG | - | chr3.3:80686934-80686953 | None:intergenic | 20.0% |
| !!! | AAATTAACTTTTTTCCTTCT+TGG | - | chr3.3:80688420-80688439 | None:intergenic | 20.0% |
| ! | AACTCTATATAATTACTTGG+TGG | - | chr3.3:80687201-80687220 | None:intergenic | 25.0% |
| ! | AATAATCCATGATTTCAGTT+AGG | - | chr3.3:80687902-80687921 | None:intergenic | 25.0% |
| ! | AATAGATCATGAATATAAGG+TGG | - | chr3.3:80688645-80688664 | None:intergenic | 25.0% |
| ! | AATCTAATGTAGGTACAAAT+CGG | + | chr3.3:80687229-80687248 | MS.gene049208:intron | 25.0% |
| ! | ATTCAAATGGAAAGAAAAGA+TGG | + | chr3.3:80688695-80688714 | MS.gene049208:CDS | 25.0% |
| ! | CAACATGACTATTATTTCAA+AGG | - | chr3.3:80688464-80688483 | None:intergenic | 25.0% |
| ! | GAAACTGCTTAAAATAGAAA+TGG | + | chr3.3:80687589-80687608 | MS.gene049208:CDS | 25.0% |
| ! | GCTATCCAAATAAAATGATT+AGG | - | chr3.3:80687687-80687706 | None:intergenic | 25.0% |
| ! | GGAGAAATCAAACAAATAAA+AGG | - | chr3.3:80687985-80688004 | None:intergenic | 25.0% |
| ! | TGCTTTATGTTGAATTTCAA+TGG | + | chr3.3:80687826-80687845 | MS.gene049208:intron | 25.0% |
| ! | TTAATCATGCAATCTAATGT+AGG | + | chr3.3:80687219-80687238 | MS.gene049208:intron | 25.0% |
| ! | TTCTACAACTGTTAATTCAA+AGG | + | chr3.3:80688536-80688555 | MS.gene049208:CDS | 25.0% |
| ! | TTGAAATAATAGTCATGTTG+AGG | + | chr3.3:80688464-80688483 | MS.gene049208:intron | 25.0% |
| !! | ATTTTCCAGATAGTAAGAAA+AGG | + | chr3.3:80686938-80686957 | MS.gene049208:CDS | 25.0% |
| !! | TGTAGTTCTGTATATTAACA+GGG | + | chr3.3:80688027-80688046 | MS.gene049208:intron | 25.0% |
| !!! | TGATCTATTATTTTTCTTGC+AGG | + | chr3.3:80688656-80688675 | MS.gene049208:intron | 25.0% |
| AAGGAAAAAATGGGAATAAG+TGG | - | chr3.3:80688619-80688638 | None:intergenic | 30.0% | |
| AAGTTCAGTACTTCTTCATT+TGG | - | chr3.3:80687616-80687635 | None:intergenic | 30.0% | |
| AGTTCAGTACTTCTTCATTT+GGG | - | chr3.3:80687615-80687634 | None:intergenic | 30.0% | |
| CTTCAGAAAAATGGAAAGAT+TGG | + | chr3.3:80688163-80688182 | MS.gene049208:CDS | 30.0% | |
| GAAAACTGAAAGTAACATGA+TGG | + | chr3.3:80687742-80687761 | MS.gene049208:CDS | 30.0% | |
| GATGTATCAAACACTGTATA+TGG | + | chr3.3:80688732-80688751 | MS.gene049208:CDS | 30.0% | |
| GGATTATTTGAAGAATTTGC+AGG | + | chr3.3:80687914-80687933 | MS.gene049208:CDS | 30.0% | |
| TAACAGTTGTAGAAGAATCT+GGG | - | chr3.3:80688530-80688549 | None:intergenic | 30.0% | |
| TTAACAGTTGTAGAAGAATC+TGG | - | chr3.3:80688531-80688550 | None:intergenic | 30.0% | |
| ! | CTGTAGTTCTGTATATTAAC+AGG | + | chr3.3:80688026-80688045 | MS.gene049208:intron | 30.0% |
| ! | TTCAGTTTTCTTTTCCTTCT+GGG | - | chr3.3:80687732-80687751 | None:intergenic | 30.0% |
| ! | TTTCAGTTTTCTTTTCCTTC+TGG | - | chr3.3:80687733-80687752 | None:intergenic | 30.0% |
| !! | CAATCTTTCCATTTTTCTGA+AGG | - | chr3.3:80688165-80688184 | None:intergenic | 30.0% |
| AACAGTTGTAGAAGAATCTG+GGG | - | chr3.3:80688529-80688548 | None:intergenic | 35.0% | |
| AACTGAAAGTAACATGATGG+AGG | + | chr3.3:80687745-80687764 | MS.gene049208:CDS | 35.0% | |
| AAGAACTGACTAACAAGAAG+AGG | + | chr3.3:80688322-80688341 | MS.gene049208:CDS | 35.0% | |
| AAGGTGGTAGAAGGAAAAAA+TGG | - | chr3.3:80688629-80688648 | None:intergenic | 35.0% | |
| AATACTCCATAATTCCGTCA+GGG | - | chr3.3:80687442-80687461 | None:intergenic | 35.0% | |
| AATCCATGATTTCAGTTAGG+CGG | - | chr3.3:80687899-80687918 | None:intergenic | 35.0% | |
| AGGTGGTAGAAGGAAAAAAT+GGG | - | chr3.3:80688628-80688647 | None:intergenic | 35.0% | |
| AGTATCACCGATGTATTTAC+GGG | - | chr3.3:80687339-80687358 | None:intergenic | 35.0% | |
| CAGTATCACCGATGTATTTA+CGG | - | chr3.3:80687340-80687359 | None:intergenic | 35.0% | |
| CATGAATATAAGGTGGTAGA+AGG | - | chr3.3:80688638-80688657 | None:intergenic | 35.0% | |
| GTATATTAACAGGGCAAGTA+TGG | + | chr3.3:80688036-80688055 | MS.gene049208:intron | 35.0% | |
| TCTTCAAGAAAACACTCTTG+TGG | - | chr3.3:80688267-80688286 | None:intergenic | 35.0% | |
| TGAGTCAGATATCACATAAG+TGG | - | chr3.3:80688006-80688025 | None:intergenic | 35.0% | |
| TTAGTCAGTTCTTCATTGAG+TGG | - | chr3.3:80688315-80688334 | None:intergenic | 35.0% | |
| TTAGTCCTCCTTCAGAAAAA+TGG | + | chr3.3:80688154-80688173 | MS.gene049208:CDS | 35.0% | |
| TTTCTTGCAGGAGATGTTTA+TGG | + | chr3.3:80688668-80688687 | MS.gene049208:intron | 35.0% | |
| ! | GTTCTTTTCCTTCTGTTACT+AGG | + | chr3.3:80686857-80686876 | MS.gene049208:CDS | 35.0% |
| ! | TTTTCCTTCTGTTACTAGGA+AGG | + | chr3.3:80686861-80686880 | MS.gene049208:CDS | 35.0% |
| !! | CAACTCGTTGATAATGTTTC+AGG | + | chr3.3:80688569-80688588 | MS.gene049208:CDS | 35.0% |
| !! | TCTTTCCATTTTTCTGAAGG+AGG | - | chr3.3:80688162-80688181 | None:intergenic | 35.0% |
| AAGAATCAGCATCCTGACAA+GGG | - | chr3.3:80687559-80687578 | None:intergenic | 40.0% | |
| ACCTCAATAAGCTGACCATA+AGG | - | chr3.3:80687039-80687058 | None:intergenic | 40.0% | |
| AGACTTGCAAGGAACTTATG+AGG | + | chr3.3:80687853-80687872 | MS.gene049208:CDS | 40.0% | |
| AGCATGACAGTAAGGATAGA+TGG | + | chr3.3:80687109-80687128 | MS.gene049208:CDS | 40.0% | |
| CAATACTCCATAATTCCGTC+AGG | - | chr3.3:80687443-80687462 | None:intergenic | 40.0% | |
| CGTAAATACATCGGTGATAC+TGG | + | chr3.3:80687338-80687357 | MS.gene049208:CDS | 40.0% | |
| CTGACGGAATTATGGAGTAT+TGG | + | chr3.3:80687441-80687460 | MS.gene049208:CDS | 40.0% | |
| TCAGCTTATTGAGGTGAAAG+AGG | + | chr3.3:80687044-80687063 | MS.gene049208:CDS | 40.0% | |
| TCTTCATTGAGTGGCTGAAT+TGG | - | chr3.3:80688306-80688325 | None:intergenic | 40.0% | |
| TCTTCCTTCCTAGTAACAGA+AGG | - | chr3.3:80686868-80686887 | None:intergenic | 40.0% | |
| TGAAGTGGAGCAACATCTTA+TGG | + | chr3.3:80688080-80688099 | MS.gene049208:CDS | 40.0% | |
| TTAGTACAGGTCGGGTTATT+GGG | - | chr3.3:80687307-80687326 | None:intergenic | 40.0% | |
| TTCTGTTACTAGGAAGGAAG+AGG | + | chr3.3:80686867-80686886 | MS.gene049208:CDS | 40.0% | |
| TTTCTTGAAGATCCCTACTC+AGG | + | chr3.3:80688276-80688295 | MS.gene049208:CDS | 40.0% | |
| TTTGGATAGCAGAGATATGC+AGG | + | chr3.3:80687697-80687716 | MS.gene049208:intron | 40.0% | |
| ! | CGCTTCCTTTTCTTACTATC+TGG | - | chr3.3:80686946-80686965 | None:intergenic | 40.0% |
| ! | GAGAAAGAAGCATGACAGTA+AGG | + | chr3.3:80687101-80687120 | MS.gene049208:CDS | 40.0% |
| ! | TTCTGAAGGAGGACTAAAAG+TGG | - | chr3.3:80688151-80688170 | None:intergenic | 40.0% |
| !! | CGGAATTATGGAGTATTGGT+TGG | + | chr3.3:80687445-80687464 | MS.gene049208:CDS | 40.0% |
| !! | TATGGAGTATTGGTTGGAGA+GGG | + | chr3.3:80687451-80687470 | MS.gene049208:CDS | 40.0% |
| !! | TTATGGAGTATTGGTTGGAG+AGG | + | chr3.3:80687450-80687469 | MS.gene049208:CDS | 40.0% |
| AATCGGCTGAACAAAGCATG+TGG | + | chr3.3:80687246-80687265 | MS.gene049208:CDS | 45.0% | |
| AGAATCAGCATCCTGACAAG+GGG | - | chr3.3:80687558-80687577 | None:intergenic | 45.0% | |
| AGATGTGCGTGCATGTTTGA+GGG | - | chr3.3:80688380-80688399 | None:intergenic | 45.0% | |
| AGCTGATCTTAGTACAGGTC+GGG | - | chr3.3:80687315-80687334 | None:intergenic | 45.0% | |
| AGTATGGTGAGTTCGCGATA+TGG | + | chr3.3:80688052-80688071 | MS.gene049208:CDS | 45.0% | |
| ATCGGCTGAACAAAGCATGT+GGG | + | chr3.3:80687247-80687266 | MS.gene049208:CDS | 45.0% | |
| CAACCGCCTAACTGAAATCA+TGG | + | chr3.3:80687893-80687912 | MS.gene049208:CDS | 45.0% | |
| CACTAACCCAGACAATACTC+AGG | + | chr3.3:80688194-80688213 | MS.gene049208:CDS | 45.0% | |
| CAGCTGATCTTAGTACAGGT+CGG | - | chr3.3:80687316-80687335 | None:intergenic | 45.0% | |
| CATCGTCAACAGGCATTCAT+TGG | + | chr3.3:80686823-80686842 | MS.gene049208:CDS | 45.0% | |
| CCAGACAATACTCAGGATGA+CGG | + | chr3.3:80688201-80688220 | MS.gene049208:CDS | 45.0% | |
| CGCGATATGGAAAACTGAAG+TGG | + | chr3.3:80688065-80688084 | MS.gene049208:CDS | 45.0% | |
| CTAAAAGTGGTGCAGTCTCT+TGG | - | chr3.3:80688138-80688157 | None:intergenic | 45.0% | |
| CTTAGTACAGGTCGGGTTAT+TGG | - | chr3.3:80687308-80687327 | None:intergenic | 45.0% | |
| CTTGCAAGGAACTTATGAGG+TGG | + | chr3.3:80687856-80687875 | MS.gene049208:CDS | 45.0% | |
| GAAGAATCAGCATCCTGACA+AGG | - | chr3.3:80687560-80687579 | None:intergenic | 45.0% | |
| GAAGCACATTGACCGTAAAG+TGG | + | chr3.3:80687379-80687398 | MS.gene049208:CDS | 45.0% | |
| GAAGCTTAGAGAGGTGAAAG+AGG | + | chr3.3:80687011-80687030 | MS.gene049208:CDS | 45.0% | |
| GATACCACCATCCACTGTTA+GGG | + | chr3.3:80687523-80687542 | MS.gene049208:CDS | 45.0% | |
| GCCTTATGGTCAGCTTATTG+AGG | + | chr3.3:80687035-80687054 | MS.gene049208:CDS | 45.0% | |
| GGTCAATGTGCTTCAGTAAG+TGG | - | chr3.3:80687373-80687392 | None:intergenic | 45.0% | |
| GGTTGATCCTCTTGCATTGT+GGG | - | chr3.3:80688498-80688517 | None:intergenic | 45.0% | |
| GTCAACAGGCATTCATTGGT+TGG | + | chr3.3:80686827-80686846 | MS.gene049208:CDS | 45.0% | |
| GTCTTGTGAGAAGCTTAGAG+AGG | + | chr3.3:80687002-80687021 | MS.gene049208:CDS | 45.0% | |
| GTTCAACCCTGACGGAATTA+TGG | + | chr3.3:80687433-80687452 | MS.gene049208:CDS | 45.0% | |
| TACTAGGAAGGAAGAGGACT+CGG | + | chr3.3:80686873-80686892 | MS.gene049208:CDS | 45.0% | |
| TCAATGGCAGAAGACTTGCA+AGG | + | chr3.3:80687842-80687861 | MS.gene049208:intron | 45.0% | |
| TCACCTCTCTAAGCTGACTA+AGG | - | chr3.3:80686975-80686994 | None:intergenic | 45.0% | |
| TCAGCTGCCCGTAAATACAT+CGG | + | chr3.3:80687329-80687348 | MS.gene049208:CDS | 45.0% | |
| TGAATTGGCATGCCTGAGTA+GGG | - | chr3.3:80688291-80688310 | None:intergenic | 45.0% | |
| TGGAGGTGGAAAAACCAAGA+AGG | + | chr3.3:80688403-80688422 | MS.gene049208:intron | 45.0% | |
| ! | AGGTGAAAGAGGAGTATGCT+GGG | + | chr3.3:80687055-80687074 | MS.gene049208:CDS | 45.0% |
| ! | AGGTTGATCCTCTTGCATTG+TGG | - | chr3.3:80688499-80688518 | None:intergenic | 45.0% |
| ! | AGTGGATGGTGGTATCCAAT+AGG | - | chr3.3:80687519-80687538 | None:intergenic | 45.0% |
| ! | CGTCATCCTGAGTATTGTCT+GGG | - | chr3.3:80688203-80688222 | None:intergenic | 45.0% |
| ! | GAAGAATCTGGGGTGACATT+AGG | - | chr3.3:80688519-80688538 | None:intergenic | 45.0% |
| ! | GTGGATGGTGGTATCCAATA+GGG | - | chr3.3:80687518-80687537 | None:intergenic | 45.0% |
| ! | TGGATGGTGGTATCCAATAG+GGG | - | chr3.3:80687517-80687536 | None:intergenic | 45.0% |
| !! | ACGGATTGGCAACTTGGATA+GGG | + | chr3.3:80688220-80688239 | MS.gene049208:CDS | 45.0% |
| !! | CAATACTCAGGATGACGGAT+TGG | + | chr3.3:80688206-80688225 | MS.gene049208:CDS | 45.0% |
| !! | TCTTGGTTTTTCCACCTCCA+AGG | - | chr3.3:80688403-80688422 | None:intergenic | 45.0% |
| !!! | AATATCAAAATAATATTTTA+TGG | + | chr3.3:80687644-80687663 | MS.gene049208:intron | 5.0% |
| AAAGATGGAGCAGCAGCTGT+TGG | + | chr3.3:80688710-80688729 | MS.gene049208:CDS | 50.0% | |
| AACATGCACGCACATCTCCT+TGG | + | chr3.3:80688383-80688402 | MS.gene049208:intron | 50.0% | |
| AGGATAGATGGTCAAGCGAG+AGG | + | chr3.3:80687121-80687140 | MS.gene049208:CDS | 50.0% | |
| ATTGACCGTAAAGTGGCACC+TGG | + | chr3.3:80687386-80687405 | MS.gene049208:CDS | 50.0% | |
| CAGCCTTAGTCAGCTTAGAG+AGG | + | chr3.3:80686969-80686988 | MS.gene049208:CDS | 50.0% | |
| CGAAGATGGTTCAACCCTGA+CGG | + | chr3.3:80687425-80687444 | MS.gene049208:CDS | 50.0% | |
| CGTCAGGGTTGAACCATCTT+CGG | - | chr3.3:80687427-80687446 | None:intergenic | 50.0% | |
| CTCTAAGCTGACTAAGGCTG+AGG | - | chr3.3:80686969-80686988 | None:intergenic | 50.0% | |
| CTGAATTGGCATGCCTGAGT+AGG | - | chr3.3:80688292-80688311 | None:intergenic | 50.0% | |
| GAGATGTGCGTGCATGTTTG+AGG | - | chr3.3:80688381-80688400 | None:intergenic | 50.0% | |
| GAGGTGAAAGAGGAGCCTTA+TGG | + | chr3.3:80687021-80687040 | MS.gene049208:CDS | 50.0% | |
| GCTGATACCCACAATGCAAG+AGG | + | chr3.3:80688488-80688507 | MS.gene049208:CDS | 50.0% | |
| GGATACCACCATCCACTGTT+AGG | + | chr3.3:80687522-80687541 | MS.gene049208:CDS | 50.0% | |
| TGCGTGCATGTTTGAGGGTT+TGG | - | chr3.3:80688375-80688394 | None:intergenic | 50.0% | |
| ! | CCGTCATCCTGAGTATTGTC+TGG | - | chr3.3:80688204-80688223 | None:intergenic | 50.0% |
| ! | GAGGTGAAAGAGGAGTATGC+TGG | + | chr3.3:80687054-80687073 | MS.gene049208:CDS | 50.0% |
| !! | AGGATGACGGATTGGCAACT+TGG | + | chr3.3:80688214-80688233 | MS.gene049208:CDS | 50.0% |
| !! | GACGGATTGGCAACTTGGAT+AGG | + | chr3.3:80688219-80688238 | MS.gene049208:CDS | 50.0% |
| ACCGTAAAGTGGCACCTGGA+GGG | + | chr3.3:80687390-80687409 | MS.gene049208:CDS | 55.0% | |
| ATGCACGCACATCTCCTTGG+AGG | + | chr3.3:80688386-80688405 | MS.gene049208:intron | 55.0% | |
| ATGGCCCTAACAGTGGATGG+TGG | - | chr3.3:80687530-80687549 | None:intergenic | 55.0% | |
| CGGGCAGCTGATCTTAGTAC+AGG | - | chr3.3:80687320-80687339 | None:intergenic | 55.0% | |
| GGCTGAACAAAGCATGTGGG+AGG | + | chr3.3:80687250-80687269 | MS.gene049208:CDS | 55.0% | |
| TTGGTTGGAGAGGGCTGACT+TGG | + | chr3.3:80687460-80687479 | MS.gene049208:CDS | 55.0% | |
| ! | GGACTGATCGGTTCCGAAGA+TGG | + | chr3.3:80687411-80687430 | MS.gene049208:CDS | 55.0% |
| ! | GTGGGGTGTTCATCGTCAAC+AGG | + | chr3.3:80686813-80686832 | MS.gene049208:CDS | 55.0% |
| !! | AAGCATGTGGGAGGTGCTGA+AGG | + | chr3.3:80687259-80687278 | MS.gene049208:CDS | 55.0% |
| !! | CTGGGGTTGATGACCCCTAT+TGG | + | chr3.3:80687501-80687520 | MS.gene049208:CDS | 55.0% |
| !! | TCCCTCCAGGTGCCACTTTA+CGG | - | chr3.3:80687394-80687413 | None:intergenic | 55.0% |
| CACGCACATCTCCTTGGAGG+TGG | + | chr3.3:80688389-80688408 | MS.gene049208:intron | 60.0% | |
| CGGATGGCCCTAACAGTGGA+TGG | - | chr3.3:80687533-80687552 | None:intergenic | 60.0% | |
| GACCGTAAAGTGGCACCTGG+AGG | + | chr3.3:80687389-80687408 | MS.gene049208:CDS | 60.0% | |
| GCAGGAGCTCATTGCCCAGA+AGG | + | chr3.3:80687715-80687734 | MS.gene049208:CDS | 60.0% | |
| TGGCACCTGGAGGGACTGAT+CGG | + | chr3.3:80687399-80687418 | MS.gene049208:CDS | 60.0% | |
| ! | TGACTTGGATGACGTCCGCG+AGG | + | chr3.3:80687475-80687494 | MS.gene049208:CDS | 60.0% |
| !! | TGGGAGGTGCTGAAGGCAGA+GGG | + | chr3.3:80687266-80687285 | MS.gene049208:CDS | 60.0% |
| ATGACGTCCGCGAGGAGGCT+GGG | + | chr3.3:80687483-80687502 | MS.gene049208:CDS | 65.0% | |
| CAGCATCCTGACAAGGGGCG+CGG | - | chr3.3:80687553-80687572 | None:intergenic | 65.0% | |
| CATCAACCCCAGCCTCCTCG+CGG | - | chr3.3:80687493-80687512 | None:intergenic | 65.0% | |
| CGGAACCGATCAGTCCCTCC+AGG | - | chr3.3:80687407-80687426 | None:intergenic | 65.0% | |
| CTTGGATGACGTCCGCGAGG+AGG | + | chr3.3:80687478-80687497 | MS.gene049208:CDS | 65.0% | |
| ! | ATCCTGACAAGGGGCGCGGA+TGG | - | chr3.3:80687549-80687568 | None:intergenic | 65.0% |
| !! | GGAGGTGCTGAAGGCAGAGG+GGG | + | chr3.3:80687268-80687287 | MS.gene049208:CDS | 65.0% |
| !! | GGGAGGTGCTGAAGGCAGAG+GGG | + | chr3.3:80687267-80687286 | MS.gene049208:CDS | 65.0% |
| !! | GTGGGAGGTGCTGAAGGCAG+AGG | + | chr3.3:80687265-80687284 | MS.gene049208:CDS | 65.0% |
| GATGACGTCCGCGAGGAGGC+TGG | + | chr3.3:80687482-80687501 | MS.gene049208:CDS | 70.0% | |
| GGCGCGGATGGCCCTAACAG+TGG | - | chr3.3:80687537-80687556 | None:intergenic | 70.0% | |
| TGACGTCCGCGAGGAGGCTG+GGG | + | chr3.3:80687484-80687503 | MS.gene049208:CDS | 70.0% | |
| GGCCATCCGCGCCCCTTGTC+AGG | + | chr3.3:80687544-80687563 | MS.gene049208:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 80686805 | 80688773 | 80686805 | ID=MS.gene049208 |
| chr3.3 | mRNA | 80686805 | 80688773 | 80686805 | ID=MS.gene049208.t1;Parent=MS.gene049208 |
| chr3.3 | exon | 80686805 | 80687142 | 80686805 | ID=MS.gene049208.t1.exon1;Parent=MS.gene049208.t1 |
| chr3.3 | CDS | 80686805 | 80687142 | 80686805 | ID=cds.MS.gene049208.t1;Parent=MS.gene049208.t1 |
| chr3.3 | exon | 80687241 | 80687624 | 80687241 | ID=MS.gene049208.t1.exon2;Parent=MS.gene049208.t1 |
| chr3.3 | CDS | 80687241 | 80687624 | 80687241 | ID=cds.MS.gene049208.t1;Parent=MS.gene049208.t1 |
| chr3.3 | exon | 80687709 | 80687766 | 80687709 | ID=MS.gene049208.t1.exon3;Parent=MS.gene049208.t1 |
| chr3.3 | CDS | 80687709 | 80687766 | 80687709 | ID=cds.MS.gene049208.t1;Parent=MS.gene049208.t1 |
| chr3.3 | exon | 80687852 | 80687935 | 80687852 | ID=MS.gene049208.t1.exon4;Parent=MS.gene049208.t1 |
| chr3.3 | CDS | 80687852 | 80687935 | 80687852 | ID=cds.MS.gene049208.t1;Parent=MS.gene049208.t1 |
| chr3.3 | exon | 80688048 | 80688343 | 80688048 | ID=MS.gene049208.t1.exon5;Parent=MS.gene049208.t1 |
| chr3.3 | CDS | 80688048 | 80688343 | 80688048 | ID=cds.MS.gene049208.t1;Parent=MS.gene049208.t1 |
| chr3.3 | exon | 80688476 | 80688590 | 80688476 | ID=MS.gene049208.t1.exon6;Parent=MS.gene049208.t1 |
| chr3.3 | CDS | 80688476 | 80688590 | 80688476 | ID=cds.MS.gene049208.t1;Parent=MS.gene049208.t1 |
| chr3.3 | exon | 80688678 | 80688773 | 80688678 | ID=MS.gene049208.t1.exon7;Parent=MS.gene049208.t1 |
| chr3.3 | CDS | 80688678 | 80688773 | 80688678 | ID=cds.MS.gene049208.t1;Parent=MS.gene049208.t1 |
| Gene Sequence |
| Protein sequence |
