Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43394.t1 | XP_013449782.1 | 98.9 | 656 | 7 | 0 | 1 | 656 | 1 | 656 | 0.00E+00 | 1266.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43394.t1 | Q9SV13 | 73.8 | 661 | 165 | 4 | 1 | 656 | 1 | 658 | 5.0e-279 | 961.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43394.t1 | A0A072UDA6 | 98.9 | 656 | 7 | 0 | 1 | 656 | 1 | 656 | 0.0e+00 | 1266.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054883 | MS.gene43394 | 0.85587 | 4.72E-62 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene43394 | MS.gene061401 | PPI |
MS.gene61200 | MS.gene43394 | PPI |
MS.gene052232 | MS.gene43394 | PPI |
MS.gene43394 | MS.gene43089 | PPI |
MS.gene43394 | MS.gene79239 | PPI |
MS.gene75452 | MS.gene43394 | PPI |
MS.gene045087 | MS.gene43394 | PPI |
MS.gene43394 | MS.gene33361 | PPI |
MS.gene89102 | MS.gene43394 | PPI |
MS.gene56083 | MS.gene43394 | PPI |
MS.gene006936 | MS.gene43394 | PPI |
MS.gene33360 | MS.gene43394 | PPI |
MS.gene059517 | MS.gene43394 | PPI |
MS.gene033981 | MS.gene43394 | PPI |
MS.gene43394 | MS.gene36287 | PPI |
MS.gene43394 | MS.gene33359 | PPI |
MS.gene98424 | MS.gene43394 | PPI |
MS.gene43394 | MS.gene92478 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43394.t1 | MTR_7g095430 | 98.933 | 656 | 7 | 0 | 1 | 656 | 1 | 656 | 0.0 | 1332 |
MS.gene43394.t1 | MTR_7g095430 | 99.123 | 570 | 5 | 0 | 1 | 570 | 1 | 570 | 0.0 | 1159 |
MS.gene43394.t1 | MTR_1g071530 | 83.156 | 659 | 105 | 4 | 1 | 656 | 1 | 656 | 0.0 | 1095 |
MS.gene43394.t1 | MTR_2g102243 | 58.506 | 629 | 258 | 1 | 17 | 645 | 22 | 647 | 0.0 | 771 |
MS.gene43394.t1 | MTR_4g011970 | 56.121 | 629 | 273 | 1 | 17 | 645 | 29 | 654 | 0.0 | 743 |
MS.gene43394.t1 | MTR_4g084620 | 55.712 | 639 | 274 | 3 | 1 | 635 | 1 | 634 | 0.0 | 742 |
MS.gene43394.t1 | MTR_4g084640 | 56.200 | 621 | 268 | 2 | 16 | 635 | 20 | 637 | 0.0 | 736 |
MS.gene43394.t1 | MTR_5g061880 | 53.796 | 619 | 285 | 1 | 18 | 635 | 30 | 648 | 0.0 | 734 |
MS.gene43394.t1 | MTR_2g102243 | 59.928 | 554 | 222 | 0 | 17 | 570 | 22 | 575 | 0.0 | 708 |
MS.gene43394.t1 | MTR_6g086170 | 51.800 | 639 | 301 | 3 | 13 | 648 | 3 | 637 | 0.0 | 701 |
MS.gene43394.t1 | MTR_3g073780 | 52.818 | 621 | 289 | 3 | 18 | 635 | 33 | 652 | 0.0 | 701 |
MS.gene43394.t1 | MTR_2g008470 | 53.160 | 617 | 287 | 2 | 17 | 632 | 34 | 649 | 0.0 | 683 |
MS.gene43394.t1 | MTR_2g008470 | 53.160 | 617 | 287 | 2 | 17 | 632 | 53 | 668 | 0.0 | 683 |
MS.gene43394.t1 | MTR_3g073780 | 53.694 | 555 | 253 | 3 | 18 | 569 | 33 | 586 | 0.0 | 641 |
MS.gene43394.t1 | MTR_3g073780 | 54.649 | 527 | 236 | 2 | 18 | 541 | 33 | 559 | 0.0 | 619 |
MS.gene43394.t1 | MTR_5g061860 | 48.475 | 623 | 306 | 7 | 23 | 634 | 28 | 646 | 0.0 | 598 |
MS.gene43394.t1 | MTR_3g087740 | 47.068 | 614 | 321 | 4 | 24 | 634 | 37 | 649 | 0.0 | 581 |
MS.gene43394.t1 | MTR_3g073730 | 48.061 | 593 | 300 | 3 | 50 | 634 | 60 | 652 | 0.0 | 561 |
MS.gene43394.t1 | MTR_5g061860 | 49.057 | 530 | 256 | 6 | 23 | 541 | 28 | 554 | 5.90e-176 | 512 |
MS.gene43394.t1 | MTR_3g087730 | 39.326 | 623 | 357 | 9 | 23 | 631 | 34 | 649 | 3.79e-157 | 468 |
MS.gene43394.t1 | MTR_7g022870 | 36.742 | 577 | 351 | 8 | 62 | 634 | 70 | 636 | 2.62e-125 | 387 |
MS.gene43394.t1 | MTR_7g022870 | 37.769 | 511 | 304 | 8 | 62 | 568 | 70 | 570 | 1.19e-110 | 345 |
MS.gene43394.t1 | MTR_6g024420 | 28.477 | 151 | 87 | 4 | 199 | 349 | 35 | 164 | 4.94e-15 | 73.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43394.t1 | AT3G51895 | 73.828 | 661 | 165 | 4 | 1 | 656 | 46 | 703 | 0.0 | 1015 |
MS.gene43394.t1 | AT3G51895 | 73.828 | 661 | 165 | 4 | 1 | 656 | 1 | 658 | 0.0 | 1014 |
MS.gene43394.t1 | AT4G02700 | 67.296 | 636 | 207 | 1 | 10 | 644 | 2 | 637 | 0.0 | 889 |
MS.gene43394.t1 | AT1G23090 | 56.683 | 621 | 268 | 1 | 17 | 636 | 3 | 623 | 0.0 | 749 |
MS.gene43394.t1 | AT3G15990 | 55.283 | 653 | 280 | 3 | 1 | 644 | 1 | 650 | 0.0 | 743 |
MS.gene43394.t1 | AT5G19600 | 53.323 | 617 | 276 | 4 | 28 | 642 | 25 | 631 | 0.0 | 682 |
MS.gene43394.t1 | AT4G08620 | 53.473 | 619 | 287 | 1 | 18 | 635 | 23 | 641 | 0.0 | 682 |
MS.gene43394.t1 | AT1G22150 | 51.911 | 628 | 301 | 1 | 9 | 635 | 22 | 649 | 0.0 | 676 |
MS.gene43394.t1 | AT1G22150 | 51.911 | 628 | 301 | 1 | 9 | 635 | 22 | 649 | 0.0 | 676 |
MS.gene43394.t1 | AT1G22150 | 51.911 | 628 | 301 | 1 | 9 | 635 | 22 | 649 | 0.0 | 676 |
MS.gene43394.t1 | AT1G78000 | 52.751 | 618 | 291 | 1 | 18 | 634 | 28 | 645 | 0.0 | 662 |
MS.gene43394.t1 | AT1G78000 | 52.751 | 618 | 291 | 1 | 18 | 634 | 28 | 645 | 0.0 | 662 |
MS.gene43394.t1 | AT1G78000 | 52.751 | 618 | 291 | 1 | 18 | 634 | 28 | 645 | 0.0 | 662 |
MS.gene43394.t1 | AT1G78000 | 53.276 | 580 | 270 | 1 | 18 | 596 | 28 | 607 | 0.0 | 630 |
MS.gene43394.t1 | AT1G22150 | 52.313 | 562 | 267 | 1 | 9 | 569 | 22 | 583 | 0.0 | 613 |
MS.gene43394.t1 | AT1G78000 | 53.680 | 557 | 257 | 1 | 18 | 573 | 28 | 584 | 0.0 | 605 |
MS.gene43394.t1 | AT5G10180 | 48.864 | 616 | 308 | 6 | 24 | 634 | 59 | 672 | 0.0 | 595 |
MS.gene43394.t1 | AT1G23090 | 54.990 | 491 | 220 | 1 | 147 | 636 | 1 | 491 | 0.0 | 566 |
MS.gene43394.t1 | AT1G23090 | 54.990 | 491 | 220 | 1 | 147 | 636 | 1 | 491 | 0.0 | 566 |
MS.gene43394.t1 | AT1G23090 | 54.990 | 491 | 220 | 1 | 147 | 636 | 1 | 491 | 0.0 | 566 |
MS.gene43394.t1 | AT1G77990 | 48.789 | 578 | 291 | 3 | 61 | 633 | 88 | 665 | 0.0 | 555 |
MS.gene43394.t1 | AT1G78000 | 55.172 | 464 | 207 | 1 | 18 | 480 | 28 | 491 | 3.32e-173 | 504 |
MS.gene43394.t1 | AT1G78000 | 52.339 | 449 | 213 | 1 | 126 | 573 | 1 | 449 | 8.58e-160 | 468 |
MS.gene43394.t1 | AT3G12520 | 37.099 | 593 | 346 | 10 | 67 | 651 | 52 | 625 | 2.98e-124 | 383 |
MS.gene43394.t1 | AT3G12520 | 37.099 | 593 | 346 | 10 | 67 | 651 | 68 | 641 | 4.37e-124 | 383 |
MS.gene43394.t1 | AT5G13550 | 34.887 | 622 | 369 | 11 | 21 | 634 | 49 | 642 | 1.34e-119 | 372 |
MS.gene43394.t1 | AT3G12520 | 39.167 | 480 | 275 | 7 | 67 | 541 | 68 | 535 | 1.65e-105 | 330 |
Find 138 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCTTCTGATTCATCTTTAA+TGG | 0.146204 | 7.2:-14422090 | None:intergenic |
TTTCCTAAAACAAATGTTCT+AGG | 0.204883 | 7.2:-14421221 | None:intergenic |
GTATGCTTCAGTGCATATTT+TGG | 0.224904 | 7.2:+14421012 | MS.gene43394:CDS |
TTTCTGTAAGCACCAGAATT+TGG | 0.230270 | 7.2:-14421248 | None:intergenic |
GCCTCTGACGTCAGTTATAT+TGG | 0.231185 | 7.2:+14418992 | MS.gene43394:CDS |
TTGATGAAATAGGACATAAA+TGG | 0.231725 | 7.2:+14422000 | MS.gene43394:CDS |
TTAGGAAACATTCCAAATTC+TGG | 0.234121 | 7.2:+14421236 | MS.gene43394:CDS |
AACGACAACCAAGGTTCTTT+TGG | 0.247965 | 7.2:+14418955 | MS.gene43394:CDS |
AACTTTCTCAATGGGTCATC+TGG | 0.248235 | 7.2:-14415076 | None:intergenic |
CCTTCTGATTCATCTTTAAT+GGG | 0.261558 | 7.2:-14422089 | None:intergenic |
GCTAACCTCCCTCCAATTCT+TGG | 0.277029 | 7.2:+14415265 | MS.gene43394:CDS |
TCAAAGTTCCTTGATGAAAT+AGG | 0.280843 | 7.2:+14421990 | MS.gene43394:CDS |
TTGTGGGGCCCACTCCAAAA+TGG | 0.293257 | 7.2:-14415152 | None:intergenic |
TGGGATCACCATTGCTAGTT+TGG | 0.293478 | 7.2:+14415210 | MS.gene43394:CDS |
TTCTTCGTCACTTCGCTTCC+AGG | 0.313848 | 7.2:-14421957 | None:intergenic |
TTTCTTTATTGCCATCAATA+TGG | 0.316265 | 7.2:-14420589 | None:intergenic |
TTCCTGTGTTTAGCTCGTTA+TGG | 0.328261 | 7.2:+14421929 | MS.gene43394:intron |
CTGTCACATGCAGCCATTGT+AGG | 0.334792 | 7.2:+14417411 | MS.gene43394:CDS |
TTCAAGAATTACCATATTGA+TGG | 0.336656 | 7.2:+14420578 | MS.gene43394:CDS |
AAAAGCTTTGGGTTCTCAAT+TGG | 0.345326 | 7.2:-14416170 | None:intergenic |
AGTTATATTGGGAAGTATAT+TGG | 0.347770 | 7.2:+14419004 | MS.gene43394:CDS |
AATTATCACTTGGCTTGTTT+AGG | 0.348118 | 7.2:+14416237 | MS.gene43394:CDS |
ATTTCAAGAATTAGTATTCC+AGG | 0.356212 | 7.2:-14421302 | None:intergenic |
TTCACAGCTACATTCTTTGC+TGG | 0.358197 | 7.2:+14416206 | MS.gene43394:CDS |
AAGCATTGCAGATACAATTA+TGG | 0.359813 | 7.2:-14420929 | None:intergenic |
GTGTTTGTGTCACCTTATAT+AGG | 0.361063 | 7.2:+14420371 | MS.gene43394:CDS |
CAGCTTGCAGTATGTTATAA+TGG | 0.364477 | 7.2:+14421504 | MS.gene43394:CDS |
ATCAAAACTGGATTCATTAC+TGG | 0.367587 | 7.2:+14420401 | MS.gene43394:CDS |
CAAAATGCACATCATGTTCC+TGG | 0.371716 | 7.2:+14421284 | MS.gene43394:CDS |
TTGATGGCTGTGCCTATATA+AGG | 0.372271 | 7.2:-14420383 | None:intergenic |
TGGTTCTTGAACTTTCTCAA+TGG | 0.374480 | 7.2:-14415085 | None:intergenic |
TCCACCTTCAGCAACAGATT+TGG | 0.376962 | 7.2:+14420349 | MS.gene43394:CDS |
GATGGGTAGCTCAAGAGATT+TGG | 0.388069 | 7.2:+14416085 | MS.gene43394:CDS |
GGTTCTTGAACTTTCTCAAT+GGG | 0.391443 | 7.2:-14415084 | None:intergenic |
TTGAAATCAGACCTTATTGC+TGG | 0.391654 | 7.2:+14415190 | MS.gene43394:CDS |
TACTTACAAAGTCCAAGAAT+TGG | 0.393123 | 7.2:-14415277 | None:intergenic |
ATAGGCACAGCCATCAAAAC+TGG | 0.396130 | 7.2:+14420389 | MS.gene43394:CDS |
TGCAGCCATTGTAGGGTTCA+TGG | 0.404457 | 7.2:+14417419 | MS.gene43394:CDS |
CTCTCAACGTTCATGCTTGA+AGG | 0.404942 | 7.2:-14414977 | None:intergenic |
GAAGAGGAAGAGAGAATTGA+AGG | 0.423089 | 7.2:+14421469 | MS.gene43394:CDS |
AATAAAGAAATGATAGCTAT+TGG | 0.423362 | 7.2:+14420602 | MS.gene43394:CDS |
TGATGAAATAGGACATAAAT+GGG | 0.438268 | 7.2:+14422001 | MS.gene43394:CDS |
GCGGTGGGAACTGTGGCGGT+TGG | 0.442629 | 7.2:+14416107 | MS.gene43394:CDS |
CCTCTGACGTCAGTTATATT+GGG | 0.447522 | 7.2:+14418993 | MS.gene43394:CDS |
ACTTCTGATGGCATCCATGT+TGG | 0.448064 | 7.2:+14416133 | MS.gene43394:CDS |
CAATGGTGATCCCAGCAATA+AGG | 0.448097 | 7.2:-14415201 | None:intergenic |
TGTAATGGAACAAAGGTGTT+AGG | 0.451042 | 7.2:-14420885 | None:intergenic |
ACCTCTTGCTACCTCACAAC+AGG | 0.453364 | 7.2:+14420650 | MS.gene43394:CDS |
GAAGAGAGAATTGAAGGTGC+AGG | 0.453685 | 7.2:+14421475 | MS.gene43394:CDS |
CTTCTGATGGCATCCATGTT+GGG | 0.457178 | 7.2:+14416134 | MS.gene43394:CDS |
TGTCACATGCAGCCATTGTA+GGG | 0.461221 | 7.2:+14417412 | MS.gene43394:CDS |
ATGAAGCAGCAATCCATTTG+TGG | 0.462166 | 7.2:+14420965 | MS.gene43394:CDS |
ATTCACTTATGCAGTGGAGG+TGG | 0.467776 | 7.2:+14417916 | MS.gene43394:intron |
TGTGGGGCCCACTCCAAAAT+GGG | 0.471681 | 7.2:-14415151 | None:intergenic |
TCAGATTGGGGAATTGAAGA+AGG | 0.476906 | 7.2:+14420319 | MS.gene43394:intron |
AAGAAGGCGGTCGACAGAAA+AGG | 0.486634 | 7.2:+14421792 | MS.gene43394:CDS |
GAGGTGGGAAAGTGCAGTGT+TGG | 0.487836 | 7.2:+14417932 | MS.gene43394:CDS |
TCAAGAACCAACCAGCTTCA+AGG | 0.488027 | 7.2:+14415098 | MS.gene43394:CDS |
AGGTGGGAAAGTGCAGTGTT+GGG | 0.488286 | 7.2:+14417933 | MS.gene43394:CDS |
ACCGTTGGTCTATGCAATGA+TGG | 0.496527 | 7.2:+14416067 | MS.gene43394:CDS |
ATAATTGTATCTGCAATGCT+TGG | 0.501731 | 7.2:+14420931 | MS.gene43394:CDS |
AGAAGGCGGTCGACAGAAAA+GGG | 0.503839 | 7.2:+14421793 | MS.gene43394:CDS |
AGCACAAACCTCCTTGAAGC+TGG | 0.506774 | 7.2:-14415109 | None:intergenic |
AGAACTGAAGGGTGTATTGT+GGG | 0.506940 | 7.2:-14415168 | None:intergenic |
ATTTATGTCCTATTTCATCA+AGG | 0.508724 | 7.2:-14421998 | None:intergenic |
TCTTCGTCACTTCGCTTCCA+GGG | 0.509240 | 7.2:-14421956 | None:intergenic |
TTCACAGCCGAACGCGAAAA+CGG | 0.510523 | 7.2:-14420790 | None:intergenic |
AGCTCAAGAGATTTGGCGGT+GGG | 0.522130 | 7.2:+14416092 | MS.gene43394:CDS |
AAGAGAGAATTGAAGGTGCA+GGG | 0.527221 | 7.2:+14421476 | MS.gene43394:CDS |
ACCAAATCTGTTGCTGAAGG+TGG | 0.529318 | 7.2:-14420350 | None:intergenic |
CACAAGGTGGATTGATGAAG+AGG | 0.531514 | 7.2:+14421453 | MS.gene43394:CDS |
GCAGCCATTGTAGGGTTCAT+GGG | 0.535098 | 7.2:+14417420 | MS.gene43394:CDS |
TGCAGCATCAAACATTGTAA+TGG | 0.536884 | 7.2:+14420834 | MS.gene43394:CDS |
CAGATTGGGGAATTGAAGAA+GGG | 0.538657 | 7.2:+14420320 | MS.gene43394:intron |
GTTCCATTACACTCCTCTAG+TGG | 0.538765 | 7.2:+14420897 | MS.gene43394:CDS |
TTGTATTAAGAGATGGGTAA+TGG | 0.539624 | 7.2:+14414941 | None:intergenic |
TTCACTTATGCAGTGGAGGT+GGG | 0.542657 | 7.2:+14417917 | MS.gene43394:intron |
TTCAAGCTTTATACCACCGT+TGG | 0.545771 | 7.2:+14416052 | MS.gene43394:CDS |
GGAGTATGCAGCTTCATGCT+TGG | 0.547608 | 7.2:+14422050 | MS.gene43394:CDS |
CAAACCTCCTTGAAGCTGGT+TGG | 0.549238 | 7.2:-14415105 | None:intergenic |
GTGCAGGTTAGGGTTTATTG+TGG | 0.550537 | 7.2:+14417383 | MS.gene43394:intron |
TGAAATCAGACCTTATTGCT+GGG | 0.550546 | 7.2:+14415191 | MS.gene43394:CDS |
GCTAGTTTGGCTATTCCTCA+AGG | 0.550812 | 7.2:+14415223 | MS.gene43394:CDS |
GGTCTGATTTCAAGAACTGA+AGG | 0.551947 | 7.2:-14415180 | None:intergenic |
ACTTTCTCAATGGGTCATCT+GGG | 0.553047 | 7.2:-14415075 | None:intergenic |
CATTATAACATACTGCAAGC+TGG | 0.553063 | 7.2:-14421503 | None:intergenic |
CCCATTAAAGATGAATCAGA+AGG | 0.558408 | 7.2:+14422089 | MS.gene43394:CDS |
GTGACAGTTGAAGAAGCTGT+TGG | 0.562550 | 7.2:+14422029 | MS.gene43394:CDS |
GGGTAGCTCAAGAGATTTGG+CGG | 0.564948 | 7.2:+14416088 | MS.gene43394:CDS |
TTACAAAGTCCAAGAATTGG+AGG | 0.565080 | 7.2:-14415274 | None:intergenic |
ATTAACTTCACGACCCAACA+TGG | 0.566438 | 7.2:-14416147 | None:intergenic |
GTAGCAAACATTGATACAAG+TGG | 0.567341 | 7.2:+14421747 | MS.gene43394:CDS |
GGCGGTTGGATCACTTCTGA+TGG | 0.568767 | 7.2:+14416121 | MS.gene43394:CDS |
TCGGCTGTGAACTATAATGC+TGG | 0.575093 | 7.2:+14420802 | MS.gene43394:CDS |
ACCTGTTGTGAGGTAGCAAG+AGG | 0.576182 | 7.2:-14420651 | None:intergenic |
TACTGGTATAATAGCTCTTG+CGG | 0.580555 | 7.2:+14420418 | MS.gene43394:CDS |
AAGAACTGAAGGGTGTATTG+TGG | 0.580775 | 7.2:-14415169 | None:intergenic |
TATGTTATAATGGATATGAC+TGG | 0.582466 | 7.2:+14421514 | MS.gene43394:CDS |
CTTCTGATTCATCTTTAATG+GGG | 0.585512 | 7.2:-14422088 | None:intergenic |
GCTGACACCCAAAAGAACCT+TGG | 0.585966 | 7.2:-14418963 | None:intergenic |
ATATAGGAAGGAATAGCAGT+GGG | 0.590491 | 7.2:+14420539 | MS.gene43394:intron |
GGAGCTCTACAATTATCACT+TGG | 0.596813 | 7.2:+14416227 | MS.gene43394:CDS |
GCACCACTAGAGGAGTGTAA+TGG | 0.598121 | 7.2:-14420900 | None:intergenic |
TCTCAACGTTCATGCTTGAA+GGG | 0.600518 | 7.2:-14414976 | None:intergenic |
AGGAATAGCCAAACTAGCAA+TGG | 0.601613 | 7.2:-14415218 | None:intergenic |
AGATTTGGCGGTGGGAACTG+TGG | 0.603927 | 7.2:+14416100 | MS.gene43394:CDS |
CCGTTGGTCTATGCAATGAT+GGG | 0.604079 | 7.2:+14416068 | MS.gene43394:CDS |
TACAAAGTCCAAGAATTGGA+GGG | 0.610021 | 7.2:-14415273 | None:intergenic |
GTCTGATTTCAAGAACTGAA+GGG | 0.611105 | 7.2:-14415179 | None:intergenic |
AACACCAAATCTGTTGCTGA+AGG | 0.613704 | 7.2:-14420353 | None:intergenic |
TAGCTCGTTATGGTCAACCC+TGG | 0.617372 | 7.2:+14421939 | MS.gene43394:intron |
TAGCTCAAGAGATTTGGCGG+TGG | 0.618770 | 7.2:+14416091 | MS.gene43394:CDS |
TGAGAAGCATGGCGTTCAAG+TGG | 0.620130 | 7.2:+14419043 | MS.gene43394:CDS |
ATGCAAGCTATTTAAGAGAG+AGG | 0.620598 | 7.2:+14421348 | MS.gene43394:CDS |
CTAACTCACGCTGAGAAGCA+TGG | 0.621456 | 7.2:+14419032 | MS.gene43394:CDS |
CCCATCATTGCATAGACCAA+CGG | 0.628660 | 7.2:-14416068 | None:intergenic |
TTTGGCGGTGGGAACTGTGG+CGG | 0.630354 | 7.2:+14416103 | MS.gene43394:CDS |
CTTCATGCTTGGTACACACA+AGG | 0.631463 | 7.2:+14422061 | MS.gene43394:CDS |
AGAGGAGTGTAATGGAACAA+AGG | 0.634252 | 7.2:-14420892 | None:intergenic |
TTTGCATAACTAATGCCTTG+AGG | 0.635664 | 7.2:-14415238 | None:intergenic |
ATGGCTGCTAGCACCACTAG+AGG | 0.640029 | 7.2:-14420910 | None:intergenic |
TCCTCCCATGAACCCTACAA+TGG | 0.652638 | 7.2:-14417424 | None:intergenic |
TATATAGGAAGGAATAGCAG+TGG | 0.655223 | 7.2:+14420538 | MS.gene43394:intron |
GAACTGAAGGGTGTATTGTG+GGG | 0.656253 | 7.2:-14415167 | None:intergenic |
AAAGTCCAAGAATTGGAGGG+AGG | 0.658649 | 7.2:-14415270 | None:intergenic |
CGAAGTATCTTGTGACGAGG+AGG | 0.658698 | 7.2:-14417974 | None:intergenic |
CCCAATATAACTGACGTCAG+AGG | 0.662898 | 7.2:-14418993 | None:intergenic |
GCCATTGTAGGGTTCATGGG+AGG | 0.665601 | 7.2:+14417423 | MS.gene43394:CDS |
CATGCTTGAAGAGTTCAAGA+AGG | 0.669452 | 7.2:+14421776 | MS.gene43394:CDS |
TTGTTGCAGGCAAACTACTG+TGG | 0.682819 | 7.2:-14417451 | None:intergenic |
AGAACCAACCAGCTTCAAGG+AGG | 0.688974 | 7.2:+14415101 | MS.gene43394:CDS |
GACAGAGCAAACGACAACCA+AGG | 0.690473 | 7.2:+14418946 | MS.gene43394:intron |
TTGTTCACAGGATCACAAGG+TGG | 0.690908 | 7.2:+14421440 | MS.gene43394:intron |
GCTTGAAGAGTTCAAGAAGG+CGG | 0.702709 | 7.2:+14421779 | MS.gene43394:CDS |
TTACGAAGTATCTTGTGACG+AGG | 0.710713 | 7.2:-14417977 | None:intergenic |
ATCATTGCATAGACCAACGG+TGG | 0.721031 | 7.2:-14416065 | None:intergenic |
CGTTGAGAGTGTGCACCGCG+TGG | 0.730027 | 7.2:+14414991 | MS.gene43394:CDS |
GATGTGGTGGTATAGCCACG+CGG | 0.858276 | 7.2:-14415006 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 14414953 | 14422127 | 14414953 | ID=MS.gene43394 |
chr7.2 | mRNA | 14414953 | 14422127 | 14414953 | ID=MS.gene43394.t1;Parent=MS.gene43394 |
chr7.2 | exon | 14414953 | 14415292 | 14414953 | ID=MS.gene43394.t1.exon1;Parent=MS.gene43394.t1 |
chr7.2 | CDS | 14414953 | 14415292 | 14414953 | ID=cds.MS.gene43394.t1;Parent=MS.gene43394.t1 |
chr7.2 | exon | 14416051 | 14416258 | 14416051 | ID=MS.gene43394.t1.exon2;Parent=MS.gene43394.t1 |
chr7.2 | CDS | 14416051 | 14416258 | 14416051 | ID=cds.MS.gene43394.t1;Parent=MS.gene43394.t1 |
chr7.2 | exon | 14417389 | 14417560 | 14417389 | ID=MS.gene43394.t1.exon3;Parent=MS.gene43394.t1 |
chr7.2 | CDS | 14417389 | 14417560 | 14417389 | ID=cds.MS.gene43394.t1;Parent=MS.gene43394.t1 |
chr7.2 | exon | 14417930 | 14417995 | 14417930 | ID=MS.gene43394.t1.exon4;Parent=MS.gene43394.t1 |
chr7.2 | CDS | 14417930 | 14417995 | 14417930 | ID=cds.MS.gene43394.t1;Parent=MS.gene43394.t1 |
chr7.2 | exon | 14418951 | 14419064 | 14418951 | ID=MS.gene43394.t1.exon5;Parent=MS.gene43394.t1 |
chr7.2 | CDS | 14418951 | 14419064 | 14418951 | ID=cds.MS.gene43394.t1;Parent=MS.gene43394.t1 |
chr7.2 | exon | 14420323 | 14420439 | 14420323 | ID=MS.gene43394.t1.exon6;Parent=MS.gene43394.t1 |
chr7.2 | CDS | 14420323 | 14420439 | 14420323 | ID=cds.MS.gene43394.t1;Parent=MS.gene43394.t1 |
chr7.2 | exon | 14420545 | 14420671 | 14420545 | ID=MS.gene43394.t1.exon7;Parent=MS.gene43394.t1 |
chr7.2 | CDS | 14420545 | 14420671 | 14420545 | ID=cds.MS.gene43394.t1;Parent=MS.gene43394.t1 |
chr7.2 | exon | 14420788 | 14421074 | 14420788 | ID=MS.gene43394.t1.exon8;Parent=MS.gene43394.t1 |
chr7.2 | CDS | 14420788 | 14421074 | 14420788 | ID=cds.MS.gene43394.t1;Parent=MS.gene43394.t1 |
chr7.2 | exon | 14421179 | 14421369 | 14421179 | ID=MS.gene43394.t1.exon9;Parent=MS.gene43394.t1 |
chr7.2 | CDS | 14421179 | 14421369 | 14421179 | ID=cds.MS.gene43394.t1;Parent=MS.gene43394.t1 |
chr7.2 | exon | 14421450 | 14421535 | 14421450 | ID=MS.gene43394.t1.exon10;Parent=MS.gene43394.t1 |
chr7.2 | CDS | 14421450 | 14421535 | 14421450 | ID=cds.MS.gene43394.t1;Parent=MS.gene43394.t1 |
chr7.2 | exon | 14421745 | 14421821 | 14421745 | ID=MS.gene43394.t1.exon11;Parent=MS.gene43394.t1 |
chr7.2 | CDS | 14421745 | 14421821 | 14421745 | ID=cds.MS.gene43394.t1;Parent=MS.gene43394.t1 |
chr7.2 | exon | 14421942 | 14422127 | 14421942 | ID=MS.gene43394.t1.exon12;Parent=MS.gene43394.t1 |
chr7.2 | CDS | 14421942 | 14422127 | 14421942 | ID=cds.MS.gene43394.t1;Parent=MS.gene43394.t1 |
Gene Sequence |
Protein sequence |