Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45779.t1 | XP_003627779.2 | 99.4 | 313 | 2 | 0 | 1 | 313 | 1 | 313 | 2.50E-171 | 611.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45779.t1 | P51074 | 70.4 | 314 | 92 | 1 | 1 | 313 | 1 | 314 | 1.7e-123 | 443.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45779.t1 | G7LF87 | 99.4 | 313 | 2 | 0 | 1 | 313 | 1 | 313 | 1.8e-171 | 611.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene45779 | -0.82194 | 3.09E-53 | -1.69E-46 |
| MS.gene050496 | MS.gene45779 | -0.853194 | 2.81E-61 | -1.69E-46 |
| MS.gene051364 | MS.gene45779 | 0.805711 | 1.17E-49 | -1.69E-46 |
| MS.gene051366 | MS.gene45779 | 0.802047 | 6.75E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene45779 | 0.810096 | 1.37E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene45779 | -0.807142 | 5.84E-50 | -1.69E-46 |
| MS.gene056198 | MS.gene45779 | 0.880174 | 6.82E-70 | -1.69E-46 |
| MS.gene056200 | MS.gene45779 | 0.965316 | 1.90E-124 | -1.69E-46 |
| MS.gene056354 | MS.gene45779 | 0.802863 | 4.59E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene45779 | -0.823526 | 1.32E-53 | -1.69E-46 |
| MS.gene056856 | MS.gene45779 | 0.805259 | 1.46E-49 | -1.69E-46 |
| MS.gene058268 | MS.gene45779 | 0.823381 | 1.43E-53 | -1.69E-46 |
| MS.gene058269 | MS.gene45779 | 0.806838 | 6.77E-50 | -1.69E-46 |
| MS.gene058382 | MS.gene45779 | 0.856973 | 2.24E-62 | -1.69E-46 |
| MS.gene059703 | MS.gene45779 | 0.808874 | 2.50E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene45779 | -0.800231 | 1.59E-48 | -1.69E-46 |
| MS.gene060595 | MS.gene45779 | 0.801534 | 8.60E-49 | -1.69E-46 |
| MS.gene060982 | MS.gene45779 | -0.806693 | 7.27E-50 | -1.69E-46 |
| MS.gene061044 | MS.gene45779 | 0.808291 | 3.33E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45779.t1 | MTR_8g038220 | 99.361 | 313 | 2 | 0 | 1 | 313 | 1 | 313 | 0.0 | 634 |
| MS.gene45779.t1 | MTR_8g038220 | 96.815 | 314 | 9 | 1 | 1 | 313 | 1 | 314 | 0.0 | 615 |
| MS.gene45779.t1 | MTR_3g018780 | 78.662 | 314 | 66 | 1 | 1 | 313 | 1 | 314 | 0.0 | 524 |
| MS.gene45779.t1 | MTR_8g038180 | 77.564 | 312 | 69 | 1 | 1 | 311 | 1 | 312 | 4.26e-180 | 499 |
| MS.gene45779.t1 | MTR_8g038210 | 74.841 | 314 | 77 | 2 | 1 | 313 | 1 | 313 | 3.78e-171 | 477 |
| MS.gene45779.t1 | MTR_8g038210 | 74.204 | 314 | 79 | 2 | 1 | 313 | 1 | 313 | 7.43e-170 | 474 |
| MS.gene45779.t1 | MTR_3g018790 | 69.427 | 314 | 95 | 1 | 1 | 313 | 1 | 314 | 1.42e-165 | 463 |
| MS.gene45779.t1 | MTR_3g018790 | 69.008 | 242 | 75 | 0 | 72 | 313 | 19 | 260 | 2.13e-125 | 359 |
| MS.gene45779.t1 | MTR_2g031980 | 48.562 | 313 | 160 | 1 | 1 | 312 | 1 | 313 | 2.72e-110 | 323 |
| MS.gene45779.t1 | MTR_0276s0050 | 49.841 | 315 | 156 | 1 | 1 | 313 | 1 | 315 | 2.24e-99 | 295 |
| MS.gene45779.t1 | MTR_5g063670 | 47.619 | 315 | 163 | 1 | 1 | 313 | 1 | 315 | 1.79e-98 | 293 |
| MS.gene45779.t1 | MTR_3g018920 | 60.096 | 208 | 50 | 2 | 1 | 207 | 1 | 176 | 3.73e-83 | 249 |
| MS.gene45779.t1 | MTR_8g038150 | 41.158 | 311 | 180 | 1 | 4 | 311 | 6 | 316 | 1.45e-79 | 244 |
| MS.gene45779.t1 | MTR_8g107640 | 38.978 | 313 | 187 | 3 | 1 | 310 | 1 | 312 | 9.84e-72 | 224 |
| MS.gene45779.t1 | MTR_6g071605 | 38.170 | 317 | 190 | 4 | 1 | 313 | 1 | 315 | 9.80e-68 | 214 |
| MS.gene45779.t1 | MTR_6g071615 | 39.117 | 317 | 187 | 4 | 1 | 313 | 1 | 315 | 1.08e-66 | 211 |
| MS.gene45779.t1 | MTR_1g033560 | 36.102 | 313 | 196 | 3 | 1 | 310 | 1 | 312 | 1.15e-62 | 201 |
| MS.gene45779.t1 | MTR_1g112520 | 36.392 | 316 | 195 | 4 | 1 | 312 | 1 | 314 | 7.96e-62 | 199 |
| MS.gene45779.t1 | MTR_8g038170 | 37.342 | 316 | 173 | 6 | 13 | 311 | 5 | 312 | 3.98e-57 | 187 |
| MS.gene45779.t1 | MTR_8g038170 | 37.342 | 316 | 173 | 6 | 13 | 311 | 5 | 312 | 3.98e-57 | 187 |
| MS.gene45779.t1 | MTR_6g071595 | 35.333 | 300 | 190 | 3 | 13 | 310 | 15 | 312 | 2.83e-56 | 185 |
| MS.gene45779.t1 | MTR_3g018925 | 70.103 | 97 | 29 | 0 | 217 | 313 | 13 | 109 | 1.68e-42 | 142 |
| MS.gene45779.t1 | MTR_6g071595 | 31.933 | 238 | 158 | 3 | 13 | 248 | 15 | 250 | 1.05e-38 | 138 |
| MS.gene45779.t1 | MTR_6g028030 | 29.066 | 289 | 191 | 5 | 31 | 311 | 28 | 310 | 2.74e-33 | 125 |
| MS.gene45779.t1 | MTR_8g038090 | 45.833 | 72 | 34 | 2 | 243 | 311 | 22 | 91 | 3.70e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45779.t1 | AT5G12380 | 55.949 | 311 | 136 | 1 | 1 | 310 | 1 | 311 | 8.24e-128 | 367 |
| MS.gene45779.t1 | AT1G35720 | 51.899 | 316 | 149 | 2 | 1 | 313 | 1 | 316 | 9.45e-109 | 319 |
| MS.gene45779.t1 | AT5G10220 | 53.642 | 302 | 138 | 1 | 11 | 310 | 13 | 314 | 1.57e-106 | 313 |
| MS.gene45779.t1 | AT5G10230 | 51.603 | 312 | 149 | 1 | 1 | 310 | 1 | 312 | 1.98e-106 | 313 |
| MS.gene45779.t1 | AT5G65020 | 49.051 | 316 | 158 | 2 | 1 | 313 | 1 | 316 | 3.04e-101 | 300 |
| MS.gene45779.t1 | AT5G65020 | 49.485 | 291 | 146 | 1 | 24 | 313 | 11 | 301 | 4.23e-95 | 284 |
| MS.gene45779.t1 | AT2G38760 | 41.424 | 309 | 175 | 2 | 10 | 312 | 12 | 320 | 5.05e-81 | 248 |
| MS.gene45779.t1 | AT1G68090 | 35.032 | 314 | 199 | 3 | 1 | 310 | 1 | 313 | 7.99e-58 | 189 |
| MS.gene45779.t1 | AT2G38750 | 34.877 | 324 | 182 | 9 | 11 | 313 | 4 | 319 | 9.88e-48 | 163 |
| MS.gene45779.t1 | AT2G38750 | 35.065 | 308 | 175 | 7 | 24 | 313 | 2 | 302 | 1.06e-47 | 162 |
| MS.gene45779.t1 | AT1G68090 | 32.669 | 251 | 164 | 3 | 1 | 247 | 1 | 250 | 2.05e-40 | 142 |
Find 67 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTTCAAAAGGCCTTTAA+AGG | 0.219073 | 8.3:+58604247 | MS.gene45779:CDS |
| CGCTGATCGCGATGCTGTTT+TGG | 0.234414 | 8.3:+58605413 | MS.gene45779:CDS |
| GTATAAGGTATTACCTTTAA+AGG | 0.238854 | 8.3:-58604260 | None:intergenic |
| GAAGAGTGTTATCACAATAT+TGG | 0.312360 | 8.3:+58605134 | MS.gene45779:CDS |
| TGCTGAGATCAATCCGAAAT+TGG | 0.313967 | 8.3:+58605799 | MS.gene45779:CDS |
| CTCATTGCCAAGACTTCTTC+AGG | 0.315389 | 8.3:-58605504 | None:intergenic |
| AAGTTCATCCTTACCTTGTT+GGG | 0.316314 | 8.3:+58606443 | MS.gene45779:CDS |
| AAGAGTGTTATCACAATATT+GGG | 0.381882 | 8.3:+58605135 | MS.gene45779:CDS |
| AGCAGCTAGATCTTCTTCTA+AGG | 0.389273 | 8.3:-58605556 | None:intergenic |
| TTCTGCGCGGTGCGCTGAAA+AGG | 0.395157 | 8.3:+58606276 | MS.gene45779:CDS |
| TCCTTGATTACAGAAACTAT+TGG | 0.399533 | 8.3:+58606053 | MS.gene45779:intron |
| GCAGTGGCAAAGGAAATTTC+AGG | 0.403300 | 8.3:+58606410 | MS.gene45779:CDS |
| GAAGTTCATCCTTACCTTGT+TGG | 0.411489 | 8.3:+58606442 | MS.gene45779:CDS |
| TGAACTCTCCGGTGACTTTG+AGG | 0.450478 | 8.3:+58605242 | MS.gene45779:CDS |
| GAGTCTTGCTCCTTGTAGTA+AGG | 0.451508 | 8.3:-58605895 | None:intergenic |
| CCTTGTAGTAAGGATTCTAA+TGG | 0.455797 | 8.3:-58605885 | None:intergenic |
| TCTTTCACCTGAAGAAGTCT+TGG | 0.459113 | 8.3:+58605497 | MS.gene45779:CDS |
| CGCGGTGCGCTGAAAAGGGT+TGG | 0.481256 | 8.3:+58606281 | MS.gene45779:CDS |
| CACCGGAGAGTTCAGATTCA+AGG | 0.485731 | 8.3:-58605233 | None:intergenic |
| CAAAACAGCATCGCGATCAG+CGG | 0.494275 | 8.3:-58605412 | None:intergenic |
| AGACGCTGAGGCTCTTCAAA+AGG | 0.504849 | 8.3:+58604237 | MS.gene45779:CDS |
| GTTCAGATTCAAGGCGTTTG+AGG | 0.508007 | 8.3:-58605224 | None:intergenic |
| AAGGGCTGAGAAAGACTTGA+AGG | 0.508028 | 8.3:+58606340 | MS.gene45779:CDS |
| CTTGCTTCCCCAACAAGGTA+AGG | 0.508755 | 8.3:-58606451 | None:intergenic |
| AGCTGTGTACCGTTGGATGC+TGG | 0.510810 | 8.3:+58605386 | MS.gene45779:CDS |
| GGCGTTTGAGGATATCCTCT+TGG | 0.516904 | 8.3:-58605212 | None:intergenic |
| TCTGCGCGGTGCGCTGAAAA+GGG | 0.523526 | 8.3:+58606277 | MS.gene45779:CDS |
| AAAACAGCATCGCGATCAGC+GGG | 0.526282 | 8.3:-58605411 | None:intergenic |
| CCTTGAGGATGCAGTGGCAA+AGG | 0.527077 | 8.3:+58606400 | MS.gene45779:CDS |
| CGCCTTGAATCTGAACTCTC+CGG | 0.528849 | 8.3:+58605231 | MS.gene45779:CDS |
| CTGGTGAGCTCATTTAGATA+TGG | 0.529789 | 8.3:+58605773 | MS.gene45779:CDS |
| TACCACCGGTCATCTTCGCC+AGG | 0.531070 | 8.3:+58605581 | MS.gene45779:CDS |
| CCATAAGAAGTACTATGAAA+AGG | 0.532592 | 8.3:+58606134 | MS.gene45779:CDS |
| AGGGTTGGAACGGATGAAGA+TGG | 0.541748 | 8.3:+58606296 | MS.gene45779:CDS |
| TGACTCGTGTGGTGGTGACA+AGG | 0.541793 | 8.3:+58606321 | MS.gene45779:CDS |
| CCTTTGCCACTGCATCCTCA+AGG | 0.543737 | 8.3:-58606400 | None:intergenic |
| CCATTAGAATCCTTACTACA+AGG | 0.546524 | 8.3:+58605885 | MS.gene45779:CDS |
| ACTTGCCTGGCGAAGATGAC+CGG | 0.547219 | 8.3:-58605586 | None:intergenic |
| AACAGAGAGCTGTGTACCGT+TGG | 0.563128 | 8.3:+58605379 | MS.gene45779:intron |
| TGCGCTGAAAAGGGTTGGAA+CGG | 0.566936 | 8.3:+58606286 | MS.gene45779:CDS |
| CTTCTAAGGAATGCTTGTAA+CGG | 0.568638 | 8.3:-58605542 | None:intergenic |
| AGAGCCTCAGCGTCTTCCAC+AGG | 0.570840 | 8.3:-58604229 | None:intergenic |
| TACAATAAAATCATCTCCTG+TGG | 0.573463 | 8.3:+58604213 | MS.gene45779:CDS |
| TTTGGCGAATGTAGCCATCA+AGG | 0.578762 | 8.3:+58605431 | MS.gene45779:CDS |
| GTCATTGATGCATCGAATCG+CGG | 0.579244 | 8.3:-58606112 | None:intergenic |
| TTATTGTACCTCAAAGTCAC+CGG | 0.579698 | 8.3:-58605250 | None:intergenic |
| GCGAATGTAGCCATCAAGGA+TGG | 0.580173 | 8.3:+58605435 | MS.gene45779:CDS |
| GACTCGTGTGGTGGTGACAA+GGG | 0.592907 | 8.3:+58606322 | MS.gene45779:CDS |
| AGTTCATCCTTACCTTGTTG+GGG | 0.599506 | 8.3:+58606444 | MS.gene45779:CDS |
| CCTTTGTTATGGAAATGCCA+TGG | 0.602491 | 8.3:-58605952 | None:intergenic |
| GAGAAACAGTGTTCACCTTG+AGG | 0.606208 | 8.3:+58606385 | MS.gene45779:CDS |
| TTATCAAGAAATTTACCAAG+AGG | 0.614448 | 8.3:+58605197 | MS.gene45779:CDS |
| TCAATCTTGCTTCCCCAACA+AGG | 0.625874 | 8.3:-58606456 | None:intergenic |
| GATCTAGCTGCTCATACCAC+CGG | 0.629596 | 8.3:+58605567 | MS.gene45779:CDS |
| TGTTCACCTTGAGGATGCAG+TGG | 0.633928 | 8.3:+58606394 | MS.gene45779:CDS |
| CAGCGGGTTCCAGCATCCAA+CGG | 0.635658 | 8.3:-58605395 | None:intergenic |
| ATCTCCTGTGGAAGACGCTG+AGG | 0.640239 | 8.3:+58604225 | MS.gene45779:CDS |
| CCATGGCATTTCCATAACAA+AGG | 0.649108 | 8.3:+58605952 | MS.gene45779:CDS |
| GTGAGCTCATTTAGATATGG+CGG | 0.649359 | 8.3:+58605776 | MS.gene45779:CDS |
| TGCCATGGTCATCTCTATAG+CGG | 0.655258 | 8.3:-58605937 | None:intergenic |
| TGCCTGGCGAAGATGACCGG+TGG | 0.671475 | 8.3:-58605583 | None:intergenic |
| TGCATCTGATGACTTTCACA+AGG | 0.672519 | 8.3:+58606080 | MS.gene45779:CDS |
| AAACAATTTCAATAATAACA+TGG | 0.685647 | 8.3:-58605470 | None:intergenic |
| CATGATGTTTAGATTCTGCG+CGG | 0.707946 | 8.3:+58606263 | MS.gene45779:intron |
| TGAAGATGGACTGACTCGTG+TGG | 0.728074 | 8.3:+58606310 | MS.gene45779:CDS |
| AACCGCTATAGAGATGACCA+TGG | 0.734411 | 8.3:+58605935 | MS.gene45779:CDS |
| AGATGGACTGACTCGTGTGG+TGG | 0.744616 | 8.3:+58606313 | MS.gene45779:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAGTTACATAAAAAATA+AGG | - | chr8.3:58605311-58605330 | None:intergenic | 10.0% |
| !! | ATAAAATAAAAAACAAAATC+AGG | - | chr8.3:58604446-58604465 | None:intergenic | 10.0% |
| !! | GAAATTAAAATAATCAAATT+AGG | + | chr8.3:58605636-58605655 | MS.gene45779:intron | 10.0% |
| !!! | AAAATCTTCTAAAATTAATA+AGG | - | chr8.3:58604699-58604718 | None:intergenic | 10.0% |
| !!! | ATTTGATTATTTTAATTTCA+AGG | - | chr8.3:58605635-58605654 | None:intergenic | 10.0% |
| !! | AAACAATTTCAATAATAACA+TGG | - | chr8.3:58605473-58605492 | None:intergenic | 15.0% |
| !! | AAAGCAAAAACAAAAATAAA+TGG | - | chr8.3:58606003-58606022 | None:intergenic | 15.0% |
| !! | AAATCATTCAAAAATAAATC+AGG | - | chr8.3:58605086-58605105 | None:intergenic | 15.0% |
| !! | AATCATTCAAAAATAAATCA+GGG | - | chr8.3:58605085-58605104 | None:intergenic | 15.0% |
| !! | TAGGAAAATATAATCAATTA+TGG | + | chr8.3:58604856-58604875 | MS.gene45779:intron | 15.0% |
| !!! | CAATTAATTATTTTGGTTAA+TGG | + | chr8.3:58604295-58604314 | MS.gene45779:intron | 15.0% |
| !!! | TATGTTAGATAATCAAATTT+TGG | + | chr8.3:58605727-58605746 | MS.gene45779:intron | 15.0% |
| !!! | TCATCTTCAATTAATTATTT+TGG | + | chr8.3:58604288-58604307 | MS.gene45779:intron | 15.0% |
| !! | AAAACATTTACTATATCAGT+AGG | - | chr8.3:58604498-58604517 | None:intergenic | 20.0% |
| !! | ACAAAAATAAATGGTAAAAG+AGG | - | chr8.3:58605994-58606013 | None:intergenic | 20.0% |
| !! | CAAAAATAAATGGTAAAAGA+GGG | - | chr8.3:58605993-58606012 | None:intergenic | 20.0% |
| !! | GGTAAAAAAAAAAAAGATCA+CGG | - | chr8.3:58606244-58606263 | None:intergenic | 20.0% |
| !!! | ACAAGTTAATTTGAAGAAAA+AGG | - | chr8.3:58604595-58604614 | None:intergenic | 20.0% |
| !!! | GTGTTAAACTTTTTTAACAA+TGG | - | chr8.3:58604744-58604763 | None:intergenic | 20.0% |
| !!! | TGACTATACATAGAATATTT+TGG | + | chr8.3:58604564-58604583 | MS.gene45779:intron | 20.0% |
| ! | AATAAGGTATATGAAATCGT+TGG | - | chr8.3:58605295-58605314 | None:intergenic | 25.0% |
| ! | GAATCAATCAAAGAGAAAAA+AGG | + | chr8.3:58605848-58605867 | MS.gene45779:CDS | 25.0% |
| ! | GCATAAAAATATTGATGTTG+CGG | + | chr8.3:58605027-58605046 | MS.gene45779:intron | 25.0% |
| ! | TTATCAAGAAATTTACCAAG+AGG | + | chr8.3:58605197-58605216 | MS.gene45779:CDS | 25.0% |
| ! | TTGAAGATGATTAGTGTATA+AGG | - | chr8.3:58604278-58604297 | None:intergenic | 25.0% |
| !! | AGCATATTTTATAGCTGTAT+AGG | + | chr8.3:58604769-58604788 | MS.gene45779:intron | 25.0% |
| !! | ATTAGCATTTTCATGTTAGT+CGG | + | chr8.3:58605664-58605683 | MS.gene45779:intron | 25.0% |
| !! | ATTTTCGTAATTCTTTACCA+GGG | + | chr8.3:58604390-58604409 | MS.gene45779:intron | 25.0% |
| !! | GTATAAGGTATTACCTTTAA+AGG | - | chr8.3:58604263-58604282 | None:intergenic | 25.0% |
| !! | TGAATGATTTTGAATTGTGT+AGG | + | chr8.3:58605096-58605115 | MS.gene45779:intron | 25.0% |
| !!! | AAGAGTGTTATCACAATATT+GGG | + | chr8.3:58605135-58605154 | MS.gene45779:CDS | 25.0% |
| !!! | ACTTTTTTTCACCTTTGTTA+TGG | - | chr8.3:58605966-58605985 | None:intergenic | 25.0% |
| !!! | TCAATATTTTTATGCATCTG+AGG | - | chr8.3:58605022-58605041 | None:intergenic | 25.0% |
| ACTGTATATATTGAAGAGCT+AGG | + | chr8.3:58604803-58604822 | MS.gene45779:intron | 30.0% | |
| CAACTTATAGCATCATAGTT+AGG | + | chr8.3:58604837-58604856 | MS.gene45779:intron | 30.0% | |
| TACAATAAAATCATCTCCTG+TGG | + | chr8.3:58604213-58604232 | MS.gene45779:CDS | 30.0% | |
| TCCAATAGTTTCTGTAATCA+AGG | - | chr8.3:58606057-58606076 | None:intergenic | 30.0% | |
| TCCTTGATTACAGAAACTAT+TGG | + | chr8.3:58606053-58606072 | MS.gene45779:intron | 30.0% | |
| TTACAAGTTTATGTGTGAGA+CGG | - | chr8.3:58606200-58606219 | None:intergenic | 30.0% | |
| TTGATATTGCTAAGAACACA+TGG | + | chr8.3:58604985-58605004 | MS.gene45779:intron | 30.0% | |
| TTGTACTCTCTAAGCAAATT+TGG | + | chr8.3:58604611-58604630 | MS.gene45779:intron | 30.0% | |
| ! | ATTTTGAATTGTGTAGGATG+GGG | + | chr8.3:58605102-58605121 | MS.gene45779:intron | 30.0% |
| ! | CATTTTCGTAATTCTTTACC+AGG | + | chr8.3:58604389-58604408 | MS.gene45779:intron | 30.0% |
| ! | CCTTTTCATAGTACTTCTTA+TGG | - | chr8.3:58606137-58606156 | None:intergenic | 30.0% |
| ! | GATAAGAATTTTTGTGAACG+TGG | - | chr8.3:58606030-58606049 | None:intergenic | 30.0% |
| ! | GATTTTGAATTGTGTAGGAT+GGG | + | chr8.3:58605101-58605120 | MS.gene45779:intron | 30.0% |
| ! | TAGTTTCTTCGATTTGTTCA+AGG | + | chr8.3:58606162-58606181 | MS.gene45779:intron | 30.0% |
| ! | TGATTTTGAATTGTGTAGGA+TGG | + | chr8.3:58605100-58605119 | MS.gene45779:intron | 30.0% |
| ! | TTTTCGTAATTCTTTACCAG+GGG | + | chr8.3:58604391-58604410 | MS.gene45779:intron | 30.0% |
| !! | AGTCGATATTTTGAATAACG+TGG | + | chr8.3:58605347-58605366 | MS.gene45779:intron | 30.0% |
| !! | CCATAAGAAGTACTATGAAA+AGG | + | chr8.3:58606134-58606153 | MS.gene45779:CDS | 30.0% |
| !! | GAAGAGTGTTATCACAATAT+TGG | + | chr8.3:58605134-58605153 | MS.gene45779:CDS | 30.0% |
| AAGAACACATGGTAACATTG+TGG | + | chr8.3:58604996-58605015 | MS.gene45779:intron | 35.0% | |
| AAGTTCATCCTTACCTTGTT+GGG | + | chr8.3:58606443-58606462 | MS.gene45779:CDS | 35.0% | |
| ATAGCTGTAGAGCAATACAA+AGG | + | chr8.3:58604648-58604667 | MS.gene45779:intron | 35.0% | |
| CCATTAGAATCCTTACTACA+AGG | + | chr8.3:58605885-58605904 | MS.gene45779:CDS | 35.0% | |
| CCTTGTAGTAAGGATTCTAA+TGG | - | chr8.3:58605888-58605907 | None:intergenic | 35.0% | |
| GCTCTTCAAAAAGCTTTCAA+AGG | + | chr8.3:58604926-58604945 | MS.gene45779:intron | 35.0% | |
| TTATTGTACCTCAAAGTCAC+CGG | - | chr8.3:58605253-58605272 | None:intergenic | 35.0% | |
| ! | AGATGATTTAATGACTTGCC+TGG | - | chr8.3:58605602-58605621 | None:intergenic | 35.0% |
| ! | CTTCTAAGGAATGCTTGTAA+CGG | - | chr8.3:58605545-58605564 | None:intergenic | 35.0% |
| ! | GCTTCAGTTTTTGCCAATTT+CGG | - | chr8.3:58605815-58605834 | None:intergenic | 35.0% |
| ! | TTTTGAATTGTGTAGGATGG+GGG | + | chr8.3:58605103-58605122 | MS.gene45779:intron | 35.0% |
| AATGGTTGCTAGGAGCAATA+AGG | - | chr8.3:58604886-58604905 | None:intergenic | 40.0% | |
| AGATCATTCTTAAAAGCCCC+TGG | - | chr8.3:58604410-58604429 | None:intergenic | 40.0% | |
| AGCAGCTAGATCTTCTTCTA+AGG | - | chr8.3:58605559-58605578 | None:intergenic | 40.0% | |
| AGTTCATCCTTACCTTGTTG+GGG | + | chr8.3:58606444-58606463 | MS.gene45779:CDS | 40.0% | |
| ATGGTTGCTAGGAGCAATAA+GGG | - | chr8.3:58604885-58604904 | None:intergenic | 40.0% | |
| CATGATGTTTAGATTCTGCG+CGG | + | chr8.3:58606263-58606282 | MS.gene45779:intron | 40.0% | |
| CCATGGCATTTCCATAACAA+AGG | + | chr8.3:58605952-58605971 | MS.gene45779:CDS | 40.0% | |
| CTGGTGAGCTCATTTAGATA+TGG | + | chr8.3:58605773-58605792 | MS.gene45779:CDS | 40.0% | |
| GAAGTTCATCCTTACCTTGT+TGG | + | chr8.3:58606442-58606461 | MS.gene45779:CDS | 40.0% | |
| GCTCTTCAAAAGGCCTTTAA+AGG | + | chr8.3:58604247-58604266 | MS.gene45779:CDS | 40.0% | |
| GTGAGCTCATTTAGATATGG+CGG | + | chr8.3:58605776-58605795 | MS.gene45779:CDS | 40.0% | |
| TCTTTCACCTGAAGAAGTCT+TGG | + | chr8.3:58605497-58605516 | MS.gene45779:CDS | 40.0% | |
| TGCATCTGATGACTTTCACA+AGG | + | chr8.3:58606080-58606099 | MS.gene45779:CDS | 40.0% | |
| TGCTGAGATCAATCCGAAAT+TGG | + | chr8.3:58605799-58605818 | MS.gene45779:CDS | 40.0% | |
| ! | ACTTTTGCTTCCATCCTTGA+TGG | - | chr8.3:58605448-58605467 | None:intergenic | 40.0% |
| ! | CCTTTGTTATGGAAATGCCA+TGG | - | chr8.3:58605955-58605974 | None:intergenic | 40.0% |
| !!! | TTTGGCTCTTTTGCAGCTTT+TGG | + | chr8.3:58605745-58605764 | MS.gene45779:intron | 40.0% |
| AACCGCTATAGAGATGACCA+TGG | + | chr8.3:58605935-58605954 | MS.gene45779:CDS | 45.0% | |
| AAGGGCTGAGAAAGACTTGA+AGG | + | chr8.3:58606340-58606359 | MS.gene45779:CDS | 45.0% | |
| CAACGTTCGCATACACGATT+TGG | - | chr8.3:58605054-58605073 | None:intergenic | 45.0% | |
| CGCGCAGAATCTAAACATCA+TGG | - | chr8.3:58606265-58606284 | None:intergenic | 45.0% | |
| CTCATTGCCAAGACTTCTTC+AGG | - | chr8.3:58605507-58605526 | None:intergenic | 45.0% | |
| GAGAAACAGTGTTCACCTTG+AGG | + | chr8.3:58606385-58606404 | MS.gene45779:CDS | 45.0% | |
| GAGTCTTGCTCCTTGTAGTA+AGG | - | chr8.3:58605898-58605917 | None:intergenic | 45.0% | |
| GCAGTGGCAAAGGAAATTTC+AGG | + | chr8.3:58606410-58606429 | MS.gene45779:CDS | 45.0% | |
| GTCATTGATGCATCGAATCG+CGG | - | chr8.3:58606115-58606134 | None:intergenic | 45.0% | |
| TCAATCTTGCTTCCCCAACA+AGG | - | chr8.3:58606459-58606478 | None:intergenic | 45.0% | |
| TGCCATGGTCATCTCTATAG+CGG | - | chr8.3:58605940-58605959 | None:intergenic | 45.0% | |
| TTTGGCGAATGTAGCCATCA+AGG | + | chr8.3:58605431-58605450 | MS.gene45779:CDS | 45.0% | |
| ! | GCTCTTTTGCAGCTTTTGGT+TGG | + | chr8.3:58605749-58605768 | MS.gene45779:intron | 45.0% |
| ! | GTTCAGATTCAAGGCGTTTG+AGG | - | chr8.3:58605227-58605246 | None:intergenic | 45.0% |
| !! | TTTGCAGCTTTTGGTTGGAC+TGG | + | chr8.3:58605754-58605773 | MS.gene45779:intron | 45.0% |
| AAAACAGCATCGCGATCAGC+GGG | - | chr8.3:58605414-58605433 | None:intergenic | 50.0% | |
| AACAGAGAGCTGTGTACCGT+TGG | + | chr8.3:58605379-58605398 | MS.gene45779:intron | 50.0% | |
| AGACGCTGAGGCTCTTCAAA+AGG | + | chr8.3:58604237-58604256 | MS.gene45779:CDS | 50.0% | |
| AGAGCTTCTGCATCTGCAAC+AGG | - | chr8.3:58604911-58604930 | None:intergenic | 50.0% | |
| AGGGTTGGAACGGATGAAGA+TGG | + | chr8.3:58606296-58606315 | MS.gene45779:CDS | 50.0% | |
| CAAAACAGCATCGCGATCAG+CGG | - | chr8.3:58605415-58605434 | None:intergenic | 50.0% | |
| CACCGGAGAGTTCAGATTCA+AGG | - | chr8.3:58605236-58605255 | None:intergenic | 50.0% | |
| CGCCTTGAATCTGAACTCTC+CGG | + | chr8.3:58605231-58605250 | MS.gene45779:CDS | 50.0% | |
| CTGCATCTGCAACAGGAGAA+TGG | - | chr8.3:58604904-58604923 | None:intergenic | 50.0% | |
| CTTGCTTCCCCAACAAGGTA+AGG | - | chr8.3:58606454-58606473 | None:intergenic | 50.0% | |
| GATCTAGCTGCTCATACCAC+CGG | + | chr8.3:58605567-58605586 | MS.gene45779:CDS | 50.0% | |
| GCAACAGGAGAATGGTTGCT+AGG | - | chr8.3:58604896-58604915 | None:intergenic | 50.0% | |
| GCGAATGTAGCCATCAAGGA+TGG | + | chr8.3:58605435-58605454 | MS.gene45779:CDS | 50.0% | |
| GGCGTTTGAGGATATCCTCT+TGG | - | chr8.3:58605215-58605234 | None:intergenic | 50.0% | |
| TGAACTCTCCGGTGACTTTG+AGG | + | chr8.3:58605242-58605261 | MS.gene45779:CDS | 50.0% | |
| TGCGCTGAAAAGGGTTGGAA+CGG | + | chr8.3:58606286-58606305 | MS.gene45779:CDS | 50.0% | |
| TGTTCACCTTGAGGATGCAG+TGG | + | chr8.3:58606394-58606413 | MS.gene45779:CDS | 50.0% | |
| !! | TGAAGATGGACTGACTCGTG+TGG | + | chr8.3:58606310-58606329 | MS.gene45779:CDS | 50.0% |
| ACTTGCCTGGCGAAGATGAC+CGG | - | chr8.3:58605589-58605608 | None:intergenic | 55.0% | |
| AGCTGTGTACCGTTGGATGC+TGG | + | chr8.3:58605386-58605405 | MS.gene45779:CDS | 55.0% | |
| ATCTCCTGTGGAAGACGCTG+AGG | + | chr8.3:58604225-58604244 | MS.gene45779:CDS | 55.0% | |
| CCTTGAGGATGCAGTGGCAA+AGG | + | chr8.3:58606400-58606419 | MS.gene45779:CDS | 55.0% | |
| CCTTTGCCACTGCATCCTCA+AGG | - | chr8.3:58606403-58606422 | None:intergenic | 55.0% | |
| ! | GACTCGTGTGGTGGTGACAA+GGG | + | chr8.3:58606322-58606341 | MS.gene45779:CDS | 55.0% |
| ! | TGACTCGTGTGGTGGTGACA+AGG | + | chr8.3:58606321-58606340 | MS.gene45779:CDS | 55.0% |
| !! | AGATGGACTGACTCGTGTGG+TGG | + | chr8.3:58606313-58606332 | MS.gene45779:CDS | 55.0% |
| !! | CGCTGATCGCGATGCTGTTT+TGG | + | chr8.3:58605413-58605432 | MS.gene45779:CDS | 55.0% |
| AGAGCCTCAGCGTCTTCCAC+AGG | - | chr8.3:58604232-58604251 | None:intergenic | 60.0% | |
| TACCACCGGTCATCTTCGCC+AGG | + | chr8.3:58605581-58605600 | MS.gene45779:CDS | 60.0% | |
| TCTGCGCGGTGCGCTGAAAA+GGG | + | chr8.3:58606277-58606296 | MS.gene45779:CDS | 60.0% | |
| TTCTGCGCGGTGCGCTGAAA+AGG | + | chr8.3:58606276-58606295 | MS.gene45779:CDS | 60.0% | |
| ! | CAGCGGGTTCCAGCATCCAA+CGG | - | chr8.3:58605398-58605417 | None:intergenic | 60.0% |
| CGCGGTGCGCTGAAAAGGGT+TGG | + | chr8.3:58606281-58606300 | MS.gene45779:CDS | 65.0% | |
| TGCCTGGCGAAGATGACCGG+TGG | - | chr8.3:58605586-58605605 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 58604199 | 58606478 | 58604199 | ID=MS.gene45779 |
| chr8.3 | mRNA | 58604199 | 58606478 | 58604199 | ID=MS.gene45779.t1;Parent=MS.gene45779 |
| chr8.3 | exon | 58604199 | 58604268 | 58604199 | ID=MS.gene45779.t1.exon1;Parent=MS.gene45779.t1 |
| chr8.3 | CDS | 58604199 | 58604268 | 58604199 | ID=cds.MS.gene45779.t1;Parent=MS.gene45779.t1 |
| chr8.3 | exon | 58605118 | 58605263 | 58605118 | ID=MS.gene45779.t1.exon2;Parent=MS.gene45779.t1 |
| chr8.3 | CDS | 58605118 | 58605263 | 58605118 | ID=cds.MS.gene45779.t1;Parent=MS.gene45779.t1 |
| chr8.3 | exon | 58605384 | 58605602 | 58605384 | ID=MS.gene45779.t1.exon3;Parent=MS.gene45779.t1 |
| chr8.3 | CDS | 58605384 | 58605602 | 58605384 | ID=cds.MS.gene45779.t1;Parent=MS.gene45779.t1 |
| chr8.3 | exon | 58605761 | 58605973 | 58605761 | ID=MS.gene45779.t1.exon4;Parent=MS.gene45779.t1 |
| chr8.3 | CDS | 58605761 | 58605973 | 58605761 | ID=cds.MS.gene45779.t1;Parent=MS.gene45779.t1 |
| chr8.3 | exon | 58606066 | 58606155 | 58606066 | ID=MS.gene45779.t1.exon5;Parent=MS.gene45779.t1 |
| chr8.3 | CDS | 58606066 | 58606155 | 58606066 | ID=cds.MS.gene45779.t1;Parent=MS.gene45779.t1 |
| chr8.3 | exon | 58606275 | 58606478 | 58606275 | ID=MS.gene45779.t1.exon6;Parent=MS.gene45779.t1 |
| chr8.3 | CDS | 58606275 | 58606478 | 58606275 | ID=cds.MS.gene45779.t1;Parent=MS.gene45779.t1 |
| Gene Sequence |
| Protein sequence |
