Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47664.t1 | XP_003617219.1 | 99.6 | 254 | 1 | 0 | 1 | 254 | 1 | 254 | 1.10E-145 | 525.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47664.t1 | Q9C635 | 58.9 | 209 | 58 | 2 | 20 | 200 | 29 | 237 | 2.7e-63 | 243.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47664.t1 | G7KCV7 | 99.6 | 254 | 1 | 0 | 1 | 254 | 1 | 254 | 8.1e-146 | 525.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene47664.t1 | TF | HSF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051914 | MS.gene47664 | 0.838625 | 2.57E-57 | -1.69E-46 |
MS.gene052169 | MS.gene47664 | 0.820045 | 8.44E-53 | -1.69E-46 |
MS.gene052209 | MS.gene47664 | 0.808399 | 3.16E-50 | -1.69E-46 |
MS.gene052308 | MS.gene47664 | 0.811648 | 6.30E-51 | -1.69E-46 |
MS.gene053173 | MS.gene47664 | 0.807576 | 4.73E-50 | -1.69E-46 |
MS.gene054551 | MS.gene47664 | 0.810266 | 1.26E-50 | -1.69E-46 |
MS.gene054593 | MS.gene47664 | 0.828491 | 8.73E-55 | -1.69E-46 |
MS.gene054662 | MS.gene47664 | 0.841502 | 4.57E-58 | -1.69E-46 |
MS.gene054885 | MS.gene47664 | 0.805362 | 1.39E-49 | -1.69E-46 |
MS.gene054941 | MS.gene47664 | 0.803583 | 3.25E-49 | -1.69E-46 |
MS.gene055308 | MS.gene47664 | 0.823013 | 1.74E-53 | -1.69E-46 |
MS.gene056041 | MS.gene47664 | 0.800664 | 1.30E-48 | -1.69E-46 |
MS.gene05640 | MS.gene47664 | 0.848342 | 6.52E-60 | -1.69E-46 |
MS.gene05652 | MS.gene47664 | 0.839979 | 1.15E-57 | -1.69E-46 |
MS.gene057101 | MS.gene47664 | 0.818248 | 2.16E-52 | -1.69E-46 |
MS.gene057367 | MS.gene47664 | 0.843924 | 1.04E-58 | -1.69E-46 |
MS.gene057458 | MS.gene47664 | 0.824917 | 6.23E-54 | -1.69E-46 |
MS.gene058128 | MS.gene47664 | 0.871178 | 8.33E-67 | -1.69E-46 |
MS.gene058853 | MS.gene47664 | 0.835513 | 1.61E-56 | -1.69E-46 |
MS.gene059553 | MS.gene47664 | 0.800485 | 1.41E-48 | -1.69E-46 |
MS.gene059616 | MS.gene47664 | 0.832608 | 8.58E-56 | -1.69E-46 |
MS.gene060291 | MS.gene47664 | 0.801257 | 9.80E-49 | -1.69E-46 |
MS.gene06093 | MS.gene47664 | 0.862562 | 4.64E-64 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47664.t1 | MTR_5g089170 | 99.606 | 254 | 1 | 0 | 1 | 254 | 1 | 254 | 0.0 | 527 |
MS.gene47664.t1 | MTR_3g101870 | 48.529 | 340 | 81 | 12 | 1 | 250 | 1 | 336 | 1.11e-92 | 278 |
MS.gene47664.t1 | MTR_4g011850 | 75.882 | 170 | 2 | 2 | 85 | 254 | 9 | 139 | 1.54e-85 | 251 |
MS.gene47664.t1 | MTR_5g010680 | 44.493 | 227 | 99 | 3 | 15 | 215 | 14 | 239 | 1.19e-57 | 187 |
MS.gene47664.t1 | MTR_1g100777 | 41.129 | 248 | 121 | 5 | 17 | 246 | 10 | 250 | 4.55e-55 | 179 |
MS.gene47664.t1 | MTR_7g091370 | 45.771 | 201 | 99 | 2 | 18 | 218 | 15 | 205 | 3.46e-54 | 174 |
MS.gene47664.t1 | MTR_0020s0020 | 39.623 | 265 | 127 | 6 | 16 | 249 | 24 | 286 | 8.97e-52 | 172 |
MS.gene47664.t1 | MTR_5g017470 | 38.776 | 245 | 120 | 6 | 18 | 242 | 2 | 236 | 3.17e-48 | 161 |
MS.gene47664.t1 | MTR_5g029680 | 46.597 | 191 | 90 | 2 | 22 | 212 | 29 | 207 | 5.98e-45 | 157 |
MS.gene47664.t1 | MTR_6g043060 | 69.892 | 93 | 28 | 0 | 24 | 116 | 21 | 113 | 4.59e-43 | 149 |
MS.gene47664.t1 | MTR_1g102860 | 50.943 | 159 | 58 | 2 | 23 | 181 | 38 | 176 | 3.48e-41 | 144 |
MS.gene47664.t1 | MTR_1g071360 | 45.029 | 171 | 63 | 3 | 23 | 192 | 30 | 170 | 3.47e-40 | 142 |
MS.gene47664.t1 | MTR_7g095680 | 65.957 | 94 | 32 | 0 | 23 | 116 | 47 | 140 | 3.49e-40 | 142 |
MS.gene47664.t1 | MTR_1g071360 | 45.029 | 171 | 63 | 3 | 23 | 192 | 27 | 167 | 6.86e-40 | 142 |
MS.gene47664.t1 | MTR_8g087540 | 66.667 | 99 | 32 | 1 | 18 | 116 | 6 | 103 | 3.09e-39 | 140 |
MS.gene47664.t1 | MTR_8g083100 | 68.132 | 91 | 29 | 0 | 26 | 116 | 23 | 113 | 1.93e-38 | 140 |
MS.gene47664.t1 | MTR_1g061170 | 44.512 | 164 | 68 | 3 | 19 | 181 | 43 | 184 | 5.49e-38 | 138 |
MS.gene47664.t1 | MTR_2g100680 | 63.830 | 94 | 34 | 0 | 23 | 116 | 29 | 122 | 3.52e-37 | 136 |
MS.gene47664.t1 | MTR_4g088900 | 40.361 | 166 | 87 | 3 | 22 | 183 | 30 | 187 | 2.14e-36 | 128 |
MS.gene47664.t1 | MTR_2g100670 | 58.824 | 102 | 42 | 0 | 15 | 116 | 23 | 124 | 3.52e-35 | 128 |
MS.gene47664.t1 | MTR_3g104550 | 42.138 | 159 | 73 | 1 | 23 | 181 | 44 | 183 | 4.37e-35 | 129 |
MS.gene47664.t1 | MTR_6g086805 | 59.184 | 98 | 40 | 0 | 19 | 116 | 5 | 102 | 5.28e-35 | 128 |
MS.gene47664.t1 | MTR_4g077970 | 43.949 | 157 | 75 | 2 | 25 | 181 | 12 | 155 | 8.03e-35 | 130 |
MS.gene47664.t1 | MTR_2g100670 | 58.824 | 102 | 42 | 0 | 15 | 116 | 131 | 232 | 2.78e-34 | 127 |
MS.gene47664.t1 | MTR_2g017890 | 57.000 | 100 | 42 | 1 | 18 | 117 | 9 | 107 | 1.26e-33 | 125 |
MS.gene47664.t1 | MTR_8g105780 | 60.417 | 96 | 37 | 1 | 24 | 118 | 21 | 116 | 3.73e-33 | 124 |
MS.gene47664.t1 | MTR_4g045757 | 62.069 | 58 | 22 | 0 | 25 | 82 | 14 | 71 | 2.18e-19 | 80.1 |
MS.gene47664.t1 | MTR_5g047190 | 41.304 | 92 | 47 | 2 | 33 | 117 | 1 | 92 | 3.03e-16 | 72.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47664.t1 | AT1G46264 | 61.364 | 220 | 53 | 5 | 20 | 211 | 29 | 244 | 1.86e-87 | 263 |
MS.gene47664.t1 | AT4G36990 | 39.683 | 252 | 132 | 4 | 12 | 247 | 1 | 248 | 3.06e-54 | 176 |
MS.gene47664.t1 | AT5G62020 | 40.400 | 250 | 130 | 3 | 18 | 249 | 16 | 264 | 2.13e-53 | 175 |
MS.gene47664.t1 | AT4G11660 | 71.845 | 103 | 29 | 0 | 17 | 119 | 51 | 153 | 2.33e-50 | 169 |
MS.gene47664.t1 | AT1G32330 | 46.196 | 184 | 87 | 3 | 22 | 204 | 34 | 206 | 5.26e-45 | 157 |
MS.gene47664.t1 | AT1G32330 | 46.196 | 184 | 87 | 3 | 22 | 204 | 34 | 206 | 5.70e-45 | 157 |
MS.gene47664.t1 | AT2G41690 | 43.094 | 181 | 93 | 3 | 23 | 194 | 38 | 217 | 5.04e-44 | 149 |
MS.gene47664.t1 | AT4G17750 | 64.486 | 107 | 38 | 0 | 15 | 121 | 42 | 148 | 1.73e-43 | 154 |
MS.gene47664.t1 | AT3G22830 | 66.327 | 98 | 33 | 0 | 20 | 117 | 56 | 153 | 3.77e-40 | 143 |
MS.gene47664.t1 | AT3G02990 | 66.667 | 96 | 31 | 1 | 21 | 116 | 20 | 114 | 3.75e-39 | 142 |
MS.gene47664.t1 | AT5G16820 | 67.000 | 100 | 31 | 2 | 21 | 120 | 24 | 121 | 3.87e-39 | 142 |
MS.gene47664.t1 | AT5G16820 | 67.000 | 100 | 31 | 2 | 21 | 120 | 24 | 121 | 3.87e-39 | 142 |
MS.gene47664.t1 | AT5G43840 | 60.952 | 105 | 41 | 0 | 23 | 127 | 17 | 121 | 4.58e-39 | 137 |
MS.gene47664.t1 | AT5G03720 | 63.265 | 98 | 36 | 0 | 25 | 122 | 55 | 152 | 2.50e-38 | 138 |
MS.gene47664.t1 | AT5G03720 | 63.265 | 98 | 36 | 0 | 25 | 122 | 55 | 152 | 2.50e-38 | 138 |
MS.gene47664.t1 | AT3G63350 | 36.279 | 215 | 116 | 5 | 19 | 218 | 22 | 230 | 2.82e-37 | 132 |
MS.gene47664.t1 | AT2G26150 | 59.794 | 97 | 39 | 0 | 20 | 116 | 39 | 135 | 5.55e-37 | 133 |
MS.gene47664.t1 | AT2G26150 | 59.794 | 97 | 39 | 0 | 20 | 116 | 39 | 135 | 5.55e-37 | 133 |
MS.gene47664.t1 | AT3G51910 | 60.417 | 96 | 38 | 0 | 20 | 115 | 24 | 119 | 5.56e-36 | 129 |
MS.gene47664.t1 | AT4G13980 | 64.835 | 91 | 32 | 0 | 26 | 116 | 24 | 114 | 9.80e-36 | 132 |
MS.gene47664.t1 | AT5G54070 | 57.895 | 95 | 40 | 0 | 21 | 115 | 67 | 161 | 2.94e-35 | 129 |
MS.gene47664.t1 | AT3G24520 | 60.000 | 95 | 38 | 0 | 22 | 116 | 14 | 108 | 6.82e-35 | 127 |
MS.gene47664.t1 | AT1G67970 | 50.420 | 119 | 58 | 1 | 24 | 141 | 18 | 136 | 1.01e-33 | 125 |
MS.gene47664.t1 | AT4G18880 | 65.657 | 99 | 33 | 1 | 18 | 116 | 9 | 106 | 1.39e-31 | 120 |
MS.gene47664.t1 | AT5G45710 | 42.442 | 172 | 91 | 3 | 25 | 191 | 13 | 181 | 4.25e-31 | 118 |
MS.gene47664.t1 | AT5G45710 | 42.442 | 172 | 91 | 3 | 25 | 191 | 13 | 181 | 4.25e-31 | 118 |
MS.gene47664.t1 | AT4G18870 | 44.706 | 85 | 47 | 0 | 25 | 109 | 146 | 230 | 4.62e-20 | 87.4 |
MS.gene47664.t1 | AT4G18870 | 38.596 | 114 | 62 | 3 | 26 | 137 | 14 | 121 | 2.51e-18 | 82.8 |
Find 39 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGATATCAGTGTTTGATTT+AGG | 0.203557 | 5.2:+75726241 | None:intergenic |
AGCTCTTCTGTGAAGCTATT+TGG | 0.233498 | 5.2:-75725992 | MS.gene47664:CDS |
CTATTTGGTGTTCCTCTTTG+TGG | 0.339191 | 5.2:-75725977 | MS.gene47664:CDS |
TCCTTATCATTTGGTAATTG+AGG | 0.352875 | 5.2:+75726022 | None:intergenic |
ATGAAACTACATTTGTTGTT+TGG | 0.362655 | 5.2:-75727041 | MS.gene47664:CDS |
CTATTACAATCCTTATCATT+TGG | 0.365932 | 5.2:+75726013 | None:intergenic |
AGAAGATCTCTAGCAAATTC+AGG | 0.373696 | 5.2:+75727012 | None:intergenic |
CTTTGTTCAAAGGGTGAAGC+AGG | 0.399996 | 5.2:+75726097 | None:intergenic |
ATTGTTGCTTCTTTGTTCAA+AGG | 0.403141 | 5.2:+75726087 | None:intergenic |
TCTTATTAATCAAGATTACT+AGG | 0.404553 | 5.2:+75725938 | None:intergenic |
ACAACTTCTCAAGCTTTGTT+AGG | 0.420026 | 5.2:-75726969 | MS.gene47664:CDS |
TTGTTGCTTCTTTGTTCAAA+GGG | 0.445911 | 5.2:+75726088 | None:intergenic |
TCAAGAAGGTTGTTGCTGAT+AGG | 0.447682 | 5.2:-75726429 | MS.gene47664:CDS |
AAACTACATTTGTTGTTTGG+AGG | 0.447885 | 5.2:-75727038 | MS.gene47664:CDS |
TGGTATGTCTTTGTCAAGAA+AGG | 0.453363 | 5.2:+75727111 | None:intergenic |
CTTCTTGCAGGGTTTCAAGA+AGG | 0.454510 | 5.2:-75726443 | MS.gene47664:intron |
ATTGTTGTTGATAGTGTTGA+GGG | 0.457477 | 5.2:+75726335 | None:intergenic |
AGATAACATGGTGTTCACTA+TGG | 0.459097 | 5.2:-75727157 | MS.gene47664:CDS |
ACCTCAATTACCAAATGATA+AGG | 0.460161 | 5.2:-75726023 | MS.gene47664:CDS |
TTTGATTTAGGAGATGGTAA+TGG | 0.467405 | 5.2:+75726253 | None:intergenic |
ATCCAACAGATACTTTCATC+TGG | 0.487646 | 5.2:+75726283 | None:intergenic |
TCAGTGTTTGATTTAGGAGA+TGG | 0.490616 | 5.2:+75726247 | None:intergenic |
TCACTGACCACATTGTATCT+TGG | 0.491347 | 5.2:-75727071 | MS.gene47664:CDS |
GTCTTTGTCAAGAAAGGAGC+AGG | 0.498324 | 5.2:+75727117 | None:intergenic |
AACCAGATGAAAGTATCTGT+TGG | 0.501425 | 5.2:-75726285 | MS.gene47664:CDS |
CTGAGGATAATCAAAGACTA+AGG | 0.512230 | 5.2:-75726207 | MS.gene47664:CDS |
ATCTATTATGTGAAATCCAC+AGG | 0.520532 | 5.2:-75726366 | MS.gene47664:CDS |
AGAAGGTTGTTGCTGATAGG+TGG | 0.520569 | 5.2:-75726426 | MS.gene47664:CDS |
TATCTTAACAGCACTTTCTG+AGG | 0.572199 | 5.2:-75726224 | MS.gene47664:CDS |
GAAGGTTGTTGCTGATAGGT+GGG | 0.581284 | 5.2:-75726425 | MS.gene47664:CDS |
TATTGTTGTTGATAGTGTTG+AGG | 0.584009 | 5.2:+75726334 | None:intergenic |
TGAGAGGATCATCAACAAGT+TGG | 0.584975 | 5.2:+75727091 | None:intergenic |
GATACAATGTGGTCAGTGAG+AGG | 0.630246 | 5.2:+75727075 | None:intergenic |
TGATGGCTTTCACATTAGAG+AGG | 0.643157 | 5.2:-75727185 | MS.gene47664:CDS |
AGAGAGGTGTGAAGATAACA+TGG | 0.644284 | 5.2:-75727169 | MS.gene47664:CDS |
TTGTTGTTGATAGTGTTGAG+GGG | 0.651120 | 5.2:+75726336 | None:intergenic |
AGATCTCTAGCAAATTCAGG+AGG | 0.698266 | 5.2:+75727015 | None:intergenic |
AGGGTGAAGCAGGACTCACA+TGG | 0.700311 | 5.2:+75726107 | None:intergenic |
CATCACTCCAAGATACAATG+TGG | 0.717706 | 5.2:+75727064 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTTTAGAAATTATATGAAAA+TGG | + | chr5.2:75726430-75726449 | None:intergenic | 15.0% |
!! | TAACTATAATAATGAACTGA+AGG | + | chr5.2:75726263-75726282 | None:intergenic | 20.0% |
!! | TTATGAAAATATGCTGAAAA+CGG | - | chr5.2:75726476-75726495 | MS.gene47664:intron | 20.0% |
! | CTATTACAATCCTTATCATT+TGG | + | chr5.2:75727116-75727135 | None:intergenic | 25.0% |
! | CTGACAATAATTTGAGAAAA+TGG | - | chr5.2:75726563-75726582 | MS.gene47664:intron | 25.0% |
! | GCAAATGATTACTTCAAAAA+AGG | - | chr5.2:75726729-75726748 | MS.gene47664:intron | 25.0% |
! | GTACTAAAACAATATCAAGA+AGG | + | chr5.2:75726237-75726256 | None:intergenic | 25.0% |
! | TTGTTGTGCTTGAAAAAATT+GGG | + | chr5.2:75726141-75726160 | None:intergenic | 25.0% |
!! | AAGATATCAGTGTTTGATTT+AGG | + | chr5.2:75726888-75726907 | None:intergenic | 25.0% |
!!! | ATAAGCTATTTCTGTAACAA+AGG | - | chr5.2:75726388-75726407 | MS.gene47664:CDS | 25.0% |
!!! | ATGAAACTACATTTGTTGTT+TGG | - | chr5.2:75726085-75726104 | MS.gene47664:CDS | 25.0% |
!!! | TATTTTGAAGCTTGTTGAAT+TGG | - | chr5.2:75727070-75727089 | MS.gene47664:CDS | 25.0% |
AATTTGAGAAAATGGAACAG+CGG | - | chr5.2:75726571-75726590 | MS.gene47664:intron | 30.0% | |
ACCTCAATTACCAAATGATA+AGG | - | chr5.2:75727103-75727122 | MS.gene47664:CDS | 30.0% | |
ATCTATTATGTGAAATCCAC+AGG | - | chr5.2:75726760-75726779 | MS.gene47664:intron | 30.0% | |
GAGCTTACAGAAATAACTTA+CGG | + | chr5.2:75726514-75726533 | None:intergenic | 30.0% | |
GTTGTTGTGCTTGAAAAAAT+TGG | + | chr5.2:75726142-75726161 | None:intergenic | 30.0% | |
TCATCTGGTTGAAAAATTTG+TGG | + | chr5.2:75726831-75726850 | None:intergenic | 30.0% | |
! | ATTGTTGCTTCTTTGTTCAA+AGG | + | chr5.2:75727042-75727061 | None:intergenic | 30.0% |
! | TCCTTATCATTTGGTAATTG+AGG | + | chr5.2:75727107-75727126 | None:intergenic | 30.0% |
! | TTGTTGCTTCTTTGTTCAAA+GGG | + | chr5.2:75727041-75727060 | None:intergenic | 30.0% |
! | TTTGATTTAGGAGATGGTAA+TGG | + | chr5.2:75726876-75726895 | None:intergenic | 30.0% |
!! | AAACTACATTTGTTGTTTGG+AGG | - | chr5.2:75726088-75726107 | MS.gene47664:CDS | 30.0% |
!! | ATTGTTGTTGATAGTGTTGA+GGG | + | chr5.2:75726794-75726813 | None:intergenic | 30.0% |
!! | TATTGTTGTTGATAGTGTTG+AGG | + | chr5.2:75726795-75726814 | None:intergenic | 30.0% |
AGAAGATCTCTAGCAAATTC+AGG | + | chr5.2:75726117-75726136 | None:intergenic | 35.0% | |
AGATAACATGGTGTTCACTA+TGG | - | chr5.2:75725969-75725988 | MS.gene47664:CDS | 35.0% | |
ATCCAACAGATACTTTCATC+TGG | + | chr5.2:75726846-75726865 | None:intergenic | 35.0% | |
CACATGTATCAATGTCATGT+TGG | - | chr5.2:75726602-75726621 | MS.gene47664:intron | 35.0% | |
CTGAGGATAATCAAAGACTA+AGG | - | chr5.2:75726919-75726938 | MS.gene47664:intron | 35.0% | |
TATCTTAACAGCACTTTCTG+AGG | - | chr5.2:75726902-75726921 | MS.gene47664:intron | 35.0% | |
TCCTCTTTGTGGAAAAAAGA+GGG | - | chr5.2:75727160-75727179 | MS.gene47664:CDS | 35.0% | |
TGGTATGTCTTTGTCAAGAA+AGG | + | chr5.2:75726018-75726037 | None:intergenic | 35.0% | |
TTCCTCTTTGTGGAAAAAAG+AGG | - | chr5.2:75727159-75727178 | MS.gene47664:CDS | 35.0% | |
! | TCAGTGTTTGATTTAGGAGA+TGG | + | chr5.2:75726882-75726901 | None:intergenic | 35.0% |
!! | AACCAGATGAAAGTATCTGT+TGG | - | chr5.2:75726841-75726860 | MS.gene47664:intron | 35.0% |
!! | ACAACTTCTCAAGCTTTGTT+AGG | - | chr5.2:75726157-75726176 | MS.gene47664:CDS | 35.0% |
!! | TTGTTGTTGATAGTGTTGAG+GGG | + | chr5.2:75726793-75726812 | None:intergenic | 35.0% |
AGATCTCTAGCAAATTCAGG+AGG | + | chr5.2:75726114-75726133 | None:intergenic | 40.0% | |
AGCTCTTCTGTGAAGCTATT+TGG | - | chr5.2:75727134-75727153 | MS.gene47664:CDS | 40.0% | |
CATCACTCCAAGATACAATG+TGG | + | chr5.2:75726065-75726084 | None:intergenic | 40.0% | |
TACGTACTTCTCTTCTTGCA+GGG | - | chr5.2:75726672-75726691 | MS.gene47664:intron | 40.0% | |
TCAAGAAGGTTGTTGCTGAT+AGG | - | chr5.2:75726697-75726716 | MS.gene47664:intron | 40.0% | |
TCACTGACCACATTGTATCT+TGG | - | chr5.2:75726055-75726074 | MS.gene47664:CDS | 40.0% | |
TGAGAGGATCATCAACAAGT+TGG | + | chr5.2:75726038-75726057 | None:intergenic | 40.0% | |
TTACGTACTTCTCTTCTTGC+AGG | - | chr5.2:75726671-75726690 | MS.gene47664:intron | 40.0% | |
! | AGAGAGGTGTGAAGATAACA+TGG | - | chr5.2:75725957-75725976 | MS.gene47664:CDS | 40.0% |
!! | CTATTTGGTGTTCCTCTTTG+TGG | - | chr5.2:75727149-75727168 | MS.gene47664:CDS | 40.0% |
!! | GCTGAAAACGGCTTTTGAAA+AGG | - | chr5.2:75726488-75726507 | MS.gene47664:intron | 40.0% |
!!! | ACCCTCTTTTTTCCACAAAG+AGG | + | chr5.2:75727164-75727183 | None:intergenic | 40.0% |
AGAAGGTTGTTGCTGATAGG+TGG | - | chr5.2:75726700-75726719 | MS.gene47664:intron | 45.0% | |
CTTCTTGCAGGGTTTCAAGA+AGG | - | chr5.2:75726683-75726702 | MS.gene47664:intron | 45.0% | |
CTTTGTTCAAAGGGTGAAGC+AGG | + | chr5.2:75727032-75727051 | None:intergenic | 45.0% | |
GAAGGTTGTTGCTGATAGGT+GGG | - | chr5.2:75726701-75726720 | MS.gene47664:intron | 45.0% | |
GATACAATGTGGTCAGTGAG+AGG | + | chr5.2:75726054-75726073 | None:intergenic | 45.0% | |
GTCTTTGTCAAGAAAGGAGC+AGG | + | chr5.2:75726012-75726031 | None:intergenic | 45.0% | |
! | GTTGAGGGGTTTTTCTCCTG+TGG | + | chr5.2:75726779-75726798 | None:intergenic | 50.0% |
AGGGTGAAGCAGGACTCACA+TGG | + | chr5.2:75727022-75727041 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 75725943 | 75727205 | 75725943 | ID=MS.gene47664 |
chr5.2 | mRNA | 75725943 | 75727205 | 75725943 | ID=MS.gene47664.t1;Parent=MS.gene47664 |
chr5.2 | exon | 75726954 | 75727205 | 75726954 | ID=MS.gene47664.t1.exon1;Parent=MS.gene47664.t1 |
chr5.2 | CDS | 75726954 | 75727205 | 75726954 | ID=cds.MS.gene47664.t1;Parent=MS.gene47664.t1 |
chr5.2 | exon | 75725943 | 75726455 | 75725943 | ID=MS.gene47664.t1.exon2;Parent=MS.gene47664.t1 |
chr5.2 | CDS | 75725943 | 75726455 | 75725943 | ID=cds.MS.gene47664.t1;Parent=MS.gene47664.t1 |
Gene Sequence |
Protein sequence |