Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48184.t1 | RHN50986.1 | 97.6 | 41 | 1 | 0 | 1 | 41 | 1 | 41 | 3.00E-10 | 75.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48184.t1 | A0A072U8W7 | 97.6 | 41 | 1 | 0 | 1 | 41 | 1 | 41 | 2.2e-10 | 75.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050380 | MS.gene48184 | 0.813575 | 2.39E-51 | -1.69E-46 |
| MS.gene050464 | MS.gene48184 | -0.814781 | 1.29E-51 | -1.69E-46 |
| MS.gene050529 | MS.gene48184 | -0.819583 | 1.08E-52 | -1.69E-46 |
| MS.gene050809 | MS.gene48184 | 0.8425 | 2.49E-58 | -1.69E-46 |
| MS.gene050971 | MS.gene48184 | -0.821151 | 4.70E-53 | -1.69E-46 |
| MS.gene05233 | MS.gene48184 | 0.809844 | 1.55E-50 | -1.69E-46 |
| MS.gene05240 | MS.gene48184 | 0.806977 | 6.33E-50 | -1.69E-46 |
| MS.gene052702 | MS.gene48184 | 0.818269 | 2.14E-52 | -1.69E-46 |
| MS.gene054290 | MS.gene48184 | 0.883039 | 6.29E-71 | -1.69E-46 |
| MS.gene054742 | MS.gene48184 | 0.802594 | 5.21E-49 | -1.69E-46 |
| MS.gene055601 | MS.gene48184 | 0.861808 | 7.91E-64 | -1.69E-46 |
| MS.gene056330 | MS.gene48184 | 0.805728 | 1.16E-49 | -1.69E-46 |
| MS.gene056690 | MS.gene48184 | 0.809972 | 1.45E-50 | -1.69E-46 |
| MS.gene056899 | MS.gene48184 | 0.852791 | 3.66E-61 | -1.69E-46 |
| MS.gene057544 | MS.gene48184 | 0.820119 | 8.12E-53 | -1.69E-46 |
| MS.gene058158 | MS.gene48184 | 0.812949 | 3.28E-51 | -1.69E-46 |
| MS.gene058177 | MS.gene48184 | 0.807588 | 4.70E-50 | -1.69E-46 |
| MS.gene058179 | MS.gene48184 | 0.818774 | 1.64E-52 | -1.69E-46 |
| MS.gene058218 | MS.gene48184 | 0.85084 | 1.31E-60 | -1.69E-46 |
| MS.gene058928 | MS.gene48184 | -0.820561 | 6.43E-53 | -1.69E-46 |
| MS.gene059043 | MS.gene48184 | 0.831497 | 1.61E-55 | -1.69E-46 |
| MS.gene059294 | MS.gene48184 | -0.810714 | 1.00E-50 | -1.69E-46 |
| MS.gene059402 | MS.gene48184 | 0.806117 | 9.61E-50 | -1.69E-46 |
| MS.gene060578 | MS.gene48184 | 0.803096 | 4.10E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48184.t1 | MTR_6g034870 | 50.549 | 273 | 11 | 7 | 1 | 163 | 1 | 259 | 6.14e-25 | 103 |
| MS.gene48184.t1 | MTR_1g094130 | 41.364 | 220 | 54 | 5 | 1 | 147 | 27 | 244 | 1.15e-17 | 80.5 |
| MS.gene48184.t1 | MTR_1g033130 | 52.657 | 207 | 49 | 9 | 85 | 247 | 610 | 811 | 1.23e-13 | 70.5 |
| MS.gene48184.t1 | MTR_1g033130 | 50.971 | 206 | 42 | 9 | 30 | 180 | 611 | 812 | 3.89e-12 | 66.2 |
| MS.gene48184.t1 | MTR_6g034905 | 86.517 | 89 | 2 | 1 | 1 | 89 | 1 | 79 | 1.27e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 129 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTAATTGTTTGCTGAAATT+TGG | 0.094511 | 6.4:-7254502 | None:intergenic |
| GGTGAGTAGACGGGTGGAGG+TGG | 0.300627 | 6.4:-7254857 | None:intergenic |
| GGTGAGTAGACGGGTGGAGG+AGG | 0.319166 | 6.4:-7254959 | None:intergenic |
| GGTGAGTAGACGGGTGGAGG+TGG | 0.322204 | 6.4:-7254806 | None:intergenic |
| GGTGAGTAGACGGGTGGAGG+TGG | 0.322204 | 6.4:-7255010 | None:intergenic |
| GCGTATTTGTATGGCTTAGA+TGG | 0.355782 | 6.4:-7254545 | None:intergenic |
| GGTGACTTGTACTTGTAAAC+TGG | 0.357024 | 6.4:-7255040 | None:intergenic |
| GGTGGTGAGTAGACGGGTGG+AGG | 0.364452 | 6.4:-7255013 | None:intergenic |
| GTAATTGTTTGCTGAAATTT+GGG | 0.386463 | 6.4:-7254501 | None:intergenic |
| GGTGACTTATATTTATAAAC+AGG | 0.391402 | 6.4:-7254632 | None:intergenic |
| GGTGAATAGGCAGGAGGAGG+TGG | 0.391439 | 6.4:-7255061 | None:intergenic |
| GGTGGTGAGTAGACAGGTGG+GGG | 0.401670 | 6.4:-7254605 | None:intergenic |
| GGTGAGTAGACAGGTGGAGG+TGG | 0.416294 | 6.4:-7254755 | None:intergenic |
| TAAGAGTAATGGAGGCCATC+TGG | 0.418365 | 6.4:-7254442 | None:intergenic |
| GGGGACTTGTATTTGTAAAC+TGG | 0.418805 | 6.4:-7254989 | None:intergenic |
| TACTTGTAAACTGGTGGTGG+TGG | 0.421070 | 6.4:-7254572 | None:intergenic |
| GGGGACTTGTACTTGTAAAC+TGG | 0.421947 | 6.4:-7254785 | None:intergenic |
| GGTGGTGAGTAGACGGGTGG+AGG | 0.432340 | 6.4:-7254962 | None:intergenic |
| GGTGAGTAAGTAGGAGGAGG+AGG | 0.439172 | 6.4:-7255112 | None:intergenic |
| GGAGGTGGTGAGTAGACAGG+TGG | 0.439184 | 6.4:-7254608 | None:intergenic |
| GGTGGGGAAGCGTATTTGTA+TGG | 0.439487 | 6.4:-7254554 | None:intergenic |
| GGTGGTGAGTAGACGGGTGG+AGG | 0.441074 | 6.4:-7254860 | None:intergenic |
| GGAGACTTATACTTGTAAAC+TGG | 0.445660 | 6.4:-7255091 | None:intergenic |
| GGTGAGTAGACAGGTGGAGG+AGG | 0.447436 | 6.4:-7254908 | None:intergenic |
| GGTGACTTATACTTGTAAAC+AGG | 0.447648 | 6.4:-7254683 | None:intergenic |
| GGTGATTTATACTTGTAAAC+TGG | 0.448161 | 6.4:-7254581 | None:intergenic |
| GGTGGTGAGTAGACAGGTGG+AGG | 0.450883 | 6.4:-7254911 | None:intergenic |
| GGGGACTTGTACTTGTAAAC+TGG | 0.460087 | 6.4:-7254734 | None:intergenic |
| GGGGACTTGTACTTGTAAAC+TGG | 0.460087 | 6.4:-7254836 | None:intergenic |
| GGTGGTGAGTAGACTGGTGG+AGG | 0.460575 | 6.4:-7254656 | None:intergenic |
| GGAGGTGGTGAGTAGACGGG+TGG | 0.465265 | 6.4:-7255016 | None:intergenic |
| GTGAGTAGACGGGTGGAGGT+GGG | 0.465366 | 6.4:-7254805 | None:intergenic |
| GTGAGTAGACGGGTGGAGGT+GGG | 0.465366 | 6.4:-7254856 | None:intergenic |
| GTGAGTAGACGGGTGGAGGT+GGG | 0.465366 | 6.4:-7255009 | None:intergenic |
| GGTGGTGAGTAGACGGGTGG+AGG | 0.466798 | 6.4:-7254809 | None:intergenic |
| GGAGACTTGTACTTGTAAAC+TGG | 0.473880 | 6.4:-7254887 | None:intergenic |
| GGTGGTGAGTAGACAGGTGG+AGG | 0.483587 | 6.4:-7254758 | None:intergenic |
| TACTTGTAAACTGGTGGTGG+TGG | 0.483654 | 6.4:-7254878 | None:intergenic |
| GGTGGTGAATAGGCAGGAGG+AGG | 0.491973 | 6.4:-7255064 | None:intergenic |
| TTGCTGAAATTTGGGATGGC+AGG | 0.492467 | 6.4:-7254493 | None:intergenic |
| GAGGTGGTGAGTAGACAGGT+GGG | 0.495523 | 6.4:-7254607 | None:intergenic |
| GGTGGTGAGTACACGGGTGG+AGG | 0.496219 | 6.4:-7254707 | None:intergenic |
| GGTGAGTACACGGGTGGAGG+TGG | 0.500570 | 6.4:-7254704 | None:intergenic |
| AACTGGTGGAGGTGGTGAAT+AGG | 0.506476 | 6.4:-7255074 | None:intergenic |
| TATGGCTTAGATGGTGGTGG+TGG | 0.508770 | 6.4:-7254536 | None:intergenic |
| GGTGAGTAGACTGGTGGAGG+TGG | 0.509653 | 6.4:-7254653 | None:intergenic |
| TATTTATAAACAGGTGGAGG+TGG | 0.516161 | 6.4:-7254623 | None:intergenic |
| TGAGTAGACGGGTGGAGGTG+GGG | 0.516214 | 6.4:-7254804 | None:intergenic |
| TGAGTAGACGGGTGGAGGTG+GGG | 0.516214 | 6.4:-7254855 | None:intergenic |
| TGAGTAGACGGGTGGAGGTG+GGG | 0.516214 | 6.4:-7255008 | None:intergenic |
| TACTTGTAAACTGGTGGAGG+TGG | 0.518842 | 6.4:-7254725 | None:intergenic |
| TACTTGTAAACTGGTGGAGG+TGG | 0.518842 | 6.4:-7254827 | None:intergenic |
| GTGACTTGTACTTGTAAACT+GGG | 0.523791 | 6.4:-7255039 | None:intergenic |
| TATATATAATGTGGTGGAGG+TGG | 0.524968 | 6.4:-7255133 | None:intergenic |
| GTGAGTAGACAGGTGGAGGT+GGG | 0.524996 | 6.4:-7254754 | None:intergenic |
| GTGAGTAGACGGGTGGAGGA+GGG | 0.525831 | 6.4:-7254958 | None:intergenic |
| TGAGTAGACGGGTGGAGGAG+GGG | 0.526670 | 6.4:-7254957 | None:intergenic |
| GGTGGAGGTGGTGAATAGGC+AGG | 0.529051 | 6.4:-7255070 | None:intergenic |
| GGTGGTGGTGGTGAGTAGAC+GGG | 0.529501 | 6.4:-7254866 | None:intergenic |
| TACTTGTAAACAGGTGGAGG+TGG | 0.529739 | 6.4:-7254674 | None:intergenic |
| GGTGGTGAGTAAGTAGGAGG+AGG | 0.529938 | 6.4:-7255115 | None:intergenic |
| GGTGGAGGTGGTGAGTAGAC+GGG | 0.530290 | 6.4:-7254815 | None:intergenic |
| GGTGGAGGTGGTGAGTAGAC+GGG | 0.530290 | 6.4:-7254968 | None:intergenic |
| TTGTATGGCTTAGATGGTGG+TGG | 0.534713 | 6.4:-7254539 | None:intergenic |
| GGTGGAGGTGGTGAGTAAGT+AGG | 0.536815 | 6.4:-7255121 | None:intergenic |
| TAGTAGTGGTAAGGAGGAGG+TGG | 0.537644 | 6.4:-7255163 | None:intergenic |
| GGTGGAGGTGGTGAGTAGAC+AGG | 0.541551 | 6.4:-7254611 | None:intergenic |
| TGGTGGTGGTGGTGAGTAGA+CGG | 0.545412 | 6.4:-7254867 | None:intergenic |
| TACTTGTAAACTGGTGGAGG+TGG | 0.545632 | 6.4:-7255082 | None:intergenic |
| GGTGGAGGTGGTGAGTAGAC+AGG | 0.547546 | 6.4:-7254917 | None:intergenic |
| TACTTGTAAACTGGAGGTGG+TGG | 0.548314 | 6.4:-7254776 | None:intergenic |
| CAATGCAATAGTAAGAGTAA+TGG | 0.551028 | 6.4:-7254453 | None:intergenic |
| GACTTGTATTTGTAAACTGG+TGG | 0.551063 | 6.4:-7254986 | None:intergenic |
| TACTTGTACACCGGTGGAGG+TGG | 0.552117 | 6.4:-7254929 | None:intergenic |
| ACCACCATTTAGTAGTGGTA+AGG | 0.552807 | 6.4:-7255172 | None:intergenic |
| TATTTGTAAACTGGTGGAGG+TGG | 0.555899 | 6.4:-7254980 | None:intergenic |
| GGAGGTGGTGAGTAAGTAGG+AGG | 0.556059 | 6.4:-7255118 | None:intergenic |
| GGAGGTGGTGGTGAGTAGAC+AGG | 0.556465 | 6.4:-7254764 | None:intergenic |
| TGGTGGAGGTGGTGAGTAGA+CGG | 0.560893 | 6.4:-7254816 | None:intergenic |
| TGGTGGAGGTGGTGAGTAGA+CGG | 0.560893 | 6.4:-7254969 | None:intergenic |
| TGAGTAGACAGGTGGAGGTG+GGG | 0.563918 | 6.4:-7254753 | None:intergenic |
| TTGTACTTGTACACCGGTGG+AGG | 0.566635 | 6.4:-7254932 | None:intergenic |
| TGTCTACTCACCACCTCCAC+CGG | 0.569681 | 6.4:+7254919 | MS.gene48184:CDS |
| CTTGTAAACTGGTGGTGGTG+GGG | 0.574955 | 6.4:-7254570 | None:intergenic |
| TTGTATTTGTAAACTGGTGG+AGG | 0.576012 | 6.4:-7254983 | None:intergenic |
| TTATACTTGTAAACTGGTGG+TGG | 0.577426 | 6.4:-7254575 | None:intergenic |
| GGTGGAGGTGGTGAGTAGAC+TGG | 0.577950 | 6.4:-7254662 | None:intergenic |
| TTATATTTATAAACAGGTGG+AGG | 0.579141 | 6.4:-7254626 | None:intergenic |
| TGGTGGAGGTGGTGAGTACA+CGG | 0.580117 | 6.4:-7254714 | None:intergenic |
| GACTTATACTTGTAAACTGG+TGG | 0.580181 | 6.4:-7255088 | None:intergenic |
| CTTAGATGGTGGTGGTGGAG+AGG | 0.582008 | 6.4:-7254531 | None:intergenic |
| GACTTATATTTATAAACAGG+TGG | 0.583330 | 6.4:-7254629 | None:intergenic |
| GGAAAATATGAGGTTCCAGA+TGG | 0.583731 | 6.4:+7254427 | None:intergenic |
| GGTGGTGGTGAGTAGACGGG+TGG | 0.586082 | 6.4:-7254863 | None:intergenic |
| TGCAATAGTAAGAGTAATGG+AGG | 0.586366 | 6.4:-7254450 | None:intergenic |
| TTATACTTGTAAACTGGTGG+AGG | 0.588467 | 6.4:-7255085 | None:intergenic |
| ACTTGTAAACTGGTGGTGGT+GGG | 0.589086 | 6.4:-7254571 | None:intergenic |
| GGTGGTGGTGAGTAGACAGG+TGG | 0.592813 | 6.4:-7254761 | None:intergenic |
| TTGTACTTGTAAACTGGAGG+TGG | 0.593886 | 6.4:-7254779 | None:intergenic |
| TTGTACTTGTAAACTGGTGG+AGG | 0.598373 | 6.4:-7254728 | None:intergenic |
| TTGTACTTGTAAACTGGTGG+AGG | 0.598373 | 6.4:-7254830 | None:intergenic |
| GACTTGTACTTGTAAACTGG+TGG | 0.601010 | 6.4:-7254731 | None:intergenic |
| GACTTGTACTTGTAAACTGG+TGG | 0.601010 | 6.4:-7254833 | None:intergenic |
| GACTTATACTTGTAAACAGG+TGG | 0.601528 | 6.4:-7254680 | None:intergenic |
| GAGTATATATAATGTGGTGG+AGG | 0.601540 | 6.4:-7255136 | None:intergenic |
| ATTTAGTAGTGGTAAGGAGG+AGG | 0.602889 | 6.4:-7255166 | None:intergenic |
| TTATACTTGTAAACAGGTGG+AGG | 0.603042 | 6.4:-7254677 | None:intergenic |
| GGAGGTGGTGAGTAGACGGG+TGG | 0.603335 | 6.4:-7254812 | None:intergenic |
| GGAGGTGGTGAGTAGACGGG+TGG | 0.603335 | 6.4:-7254965 | None:intergenic |
| GGAGGTGGTGAGTAGACTGG+TGG | 0.605274 | 6.4:-7254659 | None:intergenic |
| TTGTACTTGTAAACTGGTGG+TGG | 0.606726 | 6.4:-7254881 | None:intergenic |
| AGGTGGTGAGTAGACAGGTG+GGG | 0.609414 | 6.4:-7254606 | None:intergenic |
| ACCATTTAGTAGTGGTAAGG+AGG | 0.618262 | 6.4:-7255169 | None:intergenic |
| GGAGGTGGTGAATAGGCAGG+AGG | 0.619832 | 6.4:-7255067 | None:intergenic |
| GAAGAGTATATATAATGTGG+TGG | 0.620347 | 6.4:-7255139 | None:intergenic |
| GGGGACTTGTACTTGTACAC+CGG | 0.620513 | 6.4:-7254938 | None:intergenic |
| GACTTGTACTTGTACACCGG+TGG | 0.621679 | 6.4:-7254935 | None:intergenic |
| CATAAACCACCATTTAGTAG+TGG | 0.625993 | 6.4:-7255177 | None:intergenic |
| GGTGGAGGTGGTGAGTACAC+GGG | 0.628880 | 6.4:-7254713 | None:intergenic |
| GGTGAAGAGTATATATAATG+TGG | 0.629472 | 6.4:-7255142 | None:intergenic |
| GGAGGTGGTGAGTACACGGG+TGG | 0.632756 | 6.4:-7254710 | None:intergenic |
| TTGTTTGCTGAAATTTGGGA+TGG | 0.632942 | 6.4:-7254497 | None:intergenic |
| GATTTATACTTGTAAACTGG+TGG | 0.644397 | 6.4:-7254578 | None:intergenic |
| GGAGGTGGTGAGTAGACAGG+TGG | 0.654911 | 6.4:-7254914 | None:intergenic |
| GACTTGTACTTGTAAACTGG+AGG | 0.661596 | 6.4:-7254782 | None:intergenic |
| GACTTGTACTTGTAAACTGG+GGG | 0.672160 | 6.4:-7255037 | None:intergenic |
| GACTTGTACTTGTAAACTGG+TGG | 0.690910 | 6.4:-7254884 | None:intergenic |
| TATTTGTATGGCTTAGATGG+TGG | 0.691843 | 6.4:-7254542 | None:intergenic |
| TGACTTGTACTTGTAAACTG+GGG | 0.718901 | 6.4:-7255038 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GACTTATATTTATAAACAGG+TGG | - | chr6.4:7254632-7254651 | None:intergenic | 25.0% |
| ! | GGTGACTTATATTTATAAAC+AGG | - | chr6.4:7254635-7254654 | None:intergenic | 25.0% |
| ! | TTATATTTATAAACAGGTGG+AGG | - | chr6.4:7254629-7254648 | None:intergenic | 25.0% |
| !! | GTAATTGTTTGCTGAAATTT+GGG | - | chr6.4:7254504-7254523 | None:intergenic | 25.0% |
| CAATGCAATAGTAAGAGTAA+TGG | - | chr6.4:7254456-7254475 | None:intergenic | 30.0% | |
| GATTTATACTTGTAAACTGG+TGG | - | chr6.4:7254581-7254600 | None:intergenic | 30.0% | |
| GGTGATTTATACTTGTAAAC+TGG | - | chr6.4:7254584-7254603 | None:intergenic | 30.0% | |
| ! | CGTAATTGTTTGCTGAAATT+TGG | - | chr6.4:7254505-7254524 | None:intergenic | 30.0% |
| ! | GAAGAGTATATATAATGTGG+TGG | - | chr6.4:7255142-7255161 | None:intergenic | 30.0% |
| ! | GGTGAAGAGTATATATAATG+TGG | - | chr6.4:7255145-7255164 | None:intergenic | 30.0% |
| GACTTATACTTGTAAACAGG+TGG | - | chr6.4:7254683-7254702 | None:intergenic | 35.0% | |
| GACTTATACTTGTAAACTGG+TGG | - | chr6.4:7255091-7255110 | None:intergenic | 35.0% | |
| GACTTGTATTTGTAAACTGG+TGG | - | chr6.4:7254989-7255008 | None:intergenic | 35.0% | |
| GAGTATATATAATGTGGTGG+AGG | - | chr6.4:7255139-7255158 | None:intergenic | 35.0% | |
| GGAGACTTATACTTGTAAAC+TGG | - | chr6.4:7255094-7255113 | None:intergenic | 35.0% | |
| GGTGACTTATACTTGTAAAC+AGG | - | chr6.4:7254686-7254705 | None:intergenic | 35.0% | |
| TATTTATAAACAGGTGGAGG+TGG | - | chr6.4:7254626-7254645 | None:intergenic | 35.0% | |
| TATTTGTATGGCTTAGATGG+TGG | - | chr6.4:7254545-7254564 | None:intergenic | 35.0% | |
| TGCAATAGTAAGAGTAATGG+AGG | - | chr6.4:7254453-7254472 | None:intergenic | 35.0% | |
| TTATACTTGTAAACAGGTGG+AGG | - | chr6.4:7254680-7254699 | None:intergenic | 35.0% | |
| TTATACTTGTAAACTGGTGG+AGG | - | chr6.4:7254578-7254597 | None:intergenic | 35.0% | |
| TTATACTTGTAAACTGGTGG+TGG | - | chr6.4:7254578-7254597 | None:intergenic | 35.0% | |
| TTGTATTTGTAAACTGGTGG+AGG | - | chr6.4:7254986-7255005 | None:intergenic | 35.0% | |
| ! | GTGACTTGTACTTGTAAACT+GGG | - | chr6.4:7255042-7255061 | None:intergenic | 35.0% |
| ! | TATATATAATGTGGTGGAGG+TGG | - | chr6.4:7255136-7255155 | None:intergenic | 35.0% |
| ! | TGACTTGTACTTGTAAACTG+GGG | - | chr6.4:7255041-7255060 | None:intergenic | 35.0% |
| ! | TTGTTTGCTGAAATTTGGGA+TGG | - | chr6.4:7254500-7254519 | None:intergenic | 35.0% |
| GACTTGTACTTGTAAACTGG+AGG | - | chr6.4:7254734-7254753 | None:intergenic | 40.0% | |
| GACTTGTACTTGTAAACTGG+GGG | - | chr6.4:7254734-7254753 | None:intergenic | 40.0% | |
| GACTTGTACTTGTAAACTGG+TGG | - | chr6.4:7254734-7254753 | None:intergenic | 40.0% | |
| GCGTATTTGTATGGCTTAGA+TGG | - | chr6.4:7254548-7254567 | None:intergenic | 40.0% | |
| GGAGACTTGTACTTGTAAAC+TGG | - | chr6.4:7254890-7254909 | None:intergenic | 40.0% | |
| GGGGACTTGTATTTGTAAAC+TGG | - | chr6.4:7254992-7255011 | None:intergenic | 40.0% | |
| TATTTGTAAACTGGTGGAGG+TGG | - | chr6.4:7254983-7255002 | None:intergenic | 40.0% | |
| TTGTACTTGTAAACTGGAGG+TGG | - | chr6.4:7254782-7254801 | None:intergenic | 40.0% | |
| TTGTACTTGTAAACTGGTGG+AGG | - | chr6.4:7254731-7254750 | None:intergenic | 40.0% | |
| TTGTACTTGTAAACTGGTGG+TGG | - | chr6.4:7254731-7254750 | None:intergenic | 40.0% | |
| ! | GGTGACTTGTACTTGTAAAC+TGG | - | chr6.4:7255043-7255062 | None:intergenic | 40.0% |
| GGGGACTTGTACTTGTAAAC+TGG | - | chr6.4:7254737-7254756 | None:intergenic | 45.0% | |
| TACTTGTAAACAGGTGGAGG+TGG | - | chr6.4:7254677-7254696 | None:intergenic | 45.0% | |
| TACTTGTAAACTGGAGGTGG+TGG | - | chr6.4:7254779-7254798 | None:intergenic | 45.0% | |
| TACTTGTAAACTGGTGGAGG+TGG | - | chr6.4:7254728-7254747 | None:intergenic | 45.0% | |
| TTGTACTTGTAAACTGGGGG+AGG | - | chr6.4:7255037-7255056 | None:intergenic | 45.0% | |
| ! | TAAGAGTAATGGAGGCCATC+TGG | - | chr6.4:7254445-7254464 | None:intergenic | 45.0% |
| ! | TTGCTGAAATTTGGGATGGC+AGG | - | chr6.4:7254496-7254515 | None:intergenic | 45.0% |
| ! | TTGTATGGCTTAGATGGTGG+TGG | - | chr6.4:7254542-7254561 | None:intergenic | 45.0% |
| !! | ACTTGTAAACTGGTGGTGGT+GGG | - | chr6.4:7254574-7254593 | None:intergenic | 45.0% |
| !! | TACTTGTAAACTGGTGGTGG+TGG | - | chr6.4:7254575-7254594 | None:intergenic | 45.0% |
| AACTGGTGGAGGTGGTGAAT+AGG | - | chr6.4:7255077-7255096 | None:intergenic | 50.0% | |
| GACTTGTACTTGTACACCGG+TGG | - | chr6.4:7254938-7254957 | None:intergenic | 50.0% | |
| GGGGACTTGTACTTGTACAC+CGG | - | chr6.4:7254941-7254960 | None:intergenic | 50.0% | |
| TACTTGTAAACTGGGGGAGG+TGG | - | chr6.4:7255034-7255053 | None:intergenic | 50.0% | |
| TAGTAGTGGTAAGGAGGAGG+TGG | - | chr6.4:7255166-7255185 | None:intergenic | 50.0% | |
| TTGTACTTGTACACCGGTGG+AGG | - | chr6.4:7254935-7254954 | None:intergenic | 50.0% | |
| ! | GGTGGGGAAGCGTATTTGTA+TGG | - | chr6.4:7254557-7254576 | None:intergenic | 50.0% |
| !! | CTTGTAAACTGGTGGTGGTG+GGG | - | chr6.4:7254573-7254592 | None:intergenic | 50.0% |
| !! | TATGGCTTAGATGGTGGTGG+TGG | - | chr6.4:7254539-7254558 | None:intergenic | 50.0% |
| AGGTGGTGAGTAGACAGGTG+GGG | - | chr6.4:7254609-7254628 | None:intergenic | 55.0% | |
| GAGGTGGTGAGTAGACAGGT+GGG | - | chr6.4:7254610-7254629 | None:intergenic | 55.0% | |
| GGAGGTGGTGAGTAAGTAGG+AGG | - | chr6.4:7255121-7255140 | None:intergenic | 55.0% | |
| GGTGAGTAAGTAGGAGGAGG+AGG | - | chr6.4:7255115-7255134 | None:intergenic | 55.0% | |
| GGTGGAGGTGGTGAGTAAGT+AGG | - | chr6.4:7255124-7255143 | None:intergenic | 55.0% | |
| GGTGGTGAGTAAGTAGGAGG+AGG | - | chr6.4:7255118-7255137 | None:intergenic | 55.0% | |
| GTGAGTAGACAGGTGGAGGT+GGG | - | chr6.4:7254757-7254776 | None:intergenic | 55.0% | |
| TACTTGTACACCGGTGGAGG+TGG | - | chr6.4:7254932-7254951 | None:intergenic | 55.0% | |
| TGAGTAGACAGGTGGAGGTG+GGG | - | chr6.4:7254756-7254775 | None:intergenic | 55.0% | |
| TGGTGGAGGTGGTGAGTACA+CGG | - | chr6.4:7254717-7254736 | None:intergenic | 55.0% | |
| TGGTGGAGGTGGTGAGTAGA+CGG | - | chr6.4:7254819-7254838 | None:intergenic | 55.0% | |
| TGTCTACTCACCACCTCCAC+CGG | + | chr6.4:7254613-7254632 | MS.gene48184:CDS | 55.0% | |
| !! | CTTAGATGGTGGTGGTGGAG+AGG | - | chr6.4:7254534-7254553 | None:intergenic | 55.0% |
| !! | TGGTGGTGGTGGTGAGTAGA+CGG | - | chr6.4:7254870-7254889 | None:intergenic | 55.0% |
| GGAGGTGGTGAATAGGCAGG+AGG | - | chr6.4:7255070-7255089 | None:intergenic | 60.0% | |
| GGAGGTGGTGAGTAGACAGG+TGG | - | chr6.4:7254611-7254630 | None:intergenic | 60.0% | |
| GGAGGTGGTGAGTAGACTGG+TGG | - | chr6.4:7254662-7254681 | None:intergenic | 60.0% | |
| GGTGAATAGGCAGGAGGAGG+TGG | - | chr6.4:7255064-7255083 | None:intergenic | 60.0% | |
| GGTGAGTAGACAGGTGGAGG+AGG | - | chr6.4:7254758-7254777 | None:intergenic | 60.0% | |
| GGTGAGTAGACAGGTGGAGG+TGG | - | chr6.4:7254758-7254777 | None:intergenic | 60.0% | |
| GGTGAGTAGACTGGTGGAGG+TGG | - | chr6.4:7254656-7254675 | None:intergenic | 60.0% | |
| GGTGGAGGTGGTGAATAGGC+AGG | - | chr6.4:7255073-7255092 | None:intergenic | 60.0% | |
| GGTGGAGGTGGTGAGTACAC+GGG | - | chr6.4:7254716-7254735 | None:intergenic | 60.0% | |
| GGTGGAGGTGGTGAGTAGAC+AGG | - | chr6.4:7254614-7254633 | None:intergenic | 60.0% | |
| GGTGGAGGTGGTGAGTAGAC+GGG | - | chr6.4:7254614-7254633 | None:intergenic | 60.0% | |
| GGTGGAGGTGGTGAGTAGAC+TGG | - | chr6.4:7254614-7254633 | None:intergenic | 60.0% | |
| GGTGGTGAATAGGCAGGAGG+AGG | - | chr6.4:7255067-7255086 | None:intergenic | 60.0% | |
| GGTGGTGAGTAGACAGGTGG+AGG | - | chr6.4:7254608-7254627 | None:intergenic | 60.0% | |
| GGTGGTGAGTAGACAGGTGG+GGG | - | chr6.4:7254608-7254627 | None:intergenic | 60.0% | |
| GGTGGTGAGTAGACTGGTGG+AGG | - | chr6.4:7254659-7254678 | None:intergenic | 60.0% | |
| GTGAGTAGACGGGTGGAGGA+GGG | - | chr6.4:7254961-7254980 | None:intergenic | 60.0% | |
| GTGAGTAGACGGGTGGAGGT+GGG | - | chr6.4:7254808-7254827 | None:intergenic | 60.0% | |
| TGAGTAGACGGGTGGAGGAG+GGG | - | chr6.4:7254960-7254979 | None:intergenic | 60.0% | |
| TGAGTAGACGGGTGGAGGTG+GGG | - | chr6.4:7254807-7254826 | None:intergenic | 60.0% | |
| TGGGGGAGGTGGTGAGTAGA+CGG | - | chr6.4:7255023-7255042 | None:intergenic | 60.0% | |
| ! | GGAGGTGGTGGTGAGTAGAC+AGG | - | chr6.4:7254767-7254786 | None:intergenic | 60.0% |
| ! | GGTGGTGGTGAGTAGACAGG+TGG | - | chr6.4:7254764-7254783 | None:intergenic | 60.0% |
| !! | GGTGGTGGTGGTGAGTAGAC+GGG | - | chr6.4:7254869-7254888 | None:intergenic | 60.0% |
| GGAGGTGGTGAGTACACGGG+TGG | - | chr6.4:7254713-7254732 | None:intergenic | 65.0% | |
| GGAGGTGGTGAGTAGACGGG+TGG | - | chr6.4:7254815-7254834 | None:intergenic | 65.0% | |
| GGGGGAGGTGGTGAGTAGAC+GGG | - | chr6.4:7255022-7255041 | None:intergenic | 65.0% | |
| GGTGAGTACACGGGTGGAGG+TGG | - | chr6.4:7254707-7254726 | None:intergenic | 65.0% | |
| GGTGAGTAGACAGGTGGGGG+TGG | - | chr6.4:7254605-7254624 | None:intergenic | 65.0% | |
| GGTGAGTAGACGGGTGGAGG+AGG | - | chr6.4:7254809-7254828 | None:intergenic | 65.0% | |
| GGTGAGTAGACGGGTGGAGG+TGG | - | chr6.4:7254809-7254828 | None:intergenic | 65.0% | |
| GGTGGTGAGTACACGGGTGG+AGG | - | chr6.4:7254710-7254729 | None:intergenic | 65.0% | |
| GGTGGTGAGTAGACGGGTGG+AGG | - | chr6.4:7254812-7254831 | None:intergenic | 65.0% | |
| ! | GGTGGTGGTGAGTAGACGGG+TGG | - | chr6.4:7254866-7254885 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 7254434 | 7255186 | 7254434 | ID=MS.gene48184 |
| chr6.4 | mRNA | 7254434 | 7255186 | 7254434 | ID=MS.gene48184.t1;Parent=MS.gene48184 |
| chr6.4 | exon | 7254434 | 7255186 | 7254434 | ID=MS.gene48184.t1.exon1;Parent=MS.gene48184.t1 |
| chr6.4 | CDS | 7254434 | 7255186 | 7254434 | ID=cds.MS.gene48184.t1;Parent=MS.gene48184.t1 |
| Gene Sequence |
| Protein sequence |
