Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50394.t1 | XP_003604990.1 | 99.5 | 219 | 1 | 0 | 1 | 219 | 1 | 219 | 1.10E-99 | 372.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50394.t1 | O48850 | 73.1 | 219 | 59 | 0 | 1 | 219 | 66 | 284 | 3.9e-87 | 322.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50394.t1 | G7JUL3 | 99.5 | 219 | 1 | 0 | 1 | 219 | 1 | 219 | 7.6e-100 | 372.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050945 | MS.gene50394 | 0.826504 | 2.62E-54 | -1.69E-46 |
| MS.gene051043 | MS.gene50394 | 0.815021 | 1.14E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene50394 | 0.829039 | 6.43E-55 | -1.69E-46 |
| MS.gene051699 | MS.gene50394 | 0.840111 | 1.06E-57 | -1.69E-46 |
| MS.gene052533 | MS.gene50394 | 0.800735 | 1.25E-48 | -1.69E-46 |
| MS.gene052793 | MS.gene50394 | 0.841589 | 4.34E-58 | -1.69E-46 |
| MS.gene054142 | MS.gene50394 | 0.812752 | 3.62E-51 | -1.69E-46 |
| MS.gene054178 | MS.gene50394 | 0.802259 | 6.11E-49 | -1.69E-46 |
| MS.gene054413 | MS.gene50394 | 0.819436 | 1.16E-52 | -1.69E-46 |
| MS.gene055221 | MS.gene50394 | 0.806682 | 7.31E-50 | -1.69E-46 |
| MS.gene055339 | MS.gene50394 | 0.8257 | 4.06E-54 | -1.69E-46 |
| MS.gene055765 | MS.gene50394 | 0.812818 | 3.50E-51 | -1.69E-46 |
| MS.gene056082 | MS.gene50394 | 0.838361 | 3.01E-57 | -1.69E-46 |
| MS.gene057102 | MS.gene50394 | 0.817378 | 3.40E-52 | -1.69E-46 |
| MS.gene058149 | MS.gene50394 | 0.818497 | 1.90E-52 | -1.69E-46 |
| MS.gene058431 | MS.gene50394 | 0.802035 | 6.79E-49 | -1.69E-46 |
| MS.gene059778 | MS.gene50394 | 0.843602 | 1.27E-58 | -1.69E-46 |
| MS.gene05985 | MS.gene50394 | -0.840321 | 9.33E-58 | -1.69E-46 |
| MS.gene060512 | MS.gene50394 | 0.801122 | 1.04E-48 | -1.69E-46 |
| MS.gene060522 | MS.gene50394 | 0.802483 | 5.49E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene50394 | 0.840003 | 1.13E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50394.t1 | MTR_4g022570 | 99.543 | 219 | 1 | 0 | 1 | 219 | 1 | 219 | 2.29e-165 | 454 |
| MS.gene50394.t1 | MTR_1g047720 | 78.539 | 219 | 47 | 0 | 1 | 219 | 1 | 219 | 5.47e-139 | 388 |
| MS.gene50394.t1 | MTR_7g058900 | 83.562 | 219 | 36 | 0 | 1 | 219 | 1 | 219 | 6.17e-129 | 362 |
| MS.gene50394.t1 | MTR_2g436870 | 70.776 | 219 | 64 | 0 | 1 | 219 | 1 | 219 | 3.55e-122 | 345 |
| MS.gene50394.t1 | MTR_4g083490 | 79.275 | 193 | 40 | 0 | 3 | 195 | 5 | 197 | 6.39e-121 | 342 |
| MS.gene50394.t1 | MTR_2g028790 | 74.419 | 215 | 55 | 0 | 2 | 216 | 6 | 220 | 1.03e-114 | 327 |
| MS.gene50394.t1 | MTR_7g058640 | 74.872 | 195 | 49 | 0 | 1 | 195 | 1 | 195 | 5.10e-111 | 317 |
| MS.gene50394.t1 | MTR_1g111890 | 55.882 | 238 | 86 | 1 | 1 | 219 | 1 | 238 | 2.35e-101 | 293 |
| MS.gene50394.t1 | MTR_7g058640 | 74.419 | 172 | 44 | 0 | 1 | 172 | 1 | 172 | 2.00e-96 | 279 |
| MS.gene50394.t1 | MTR_1g047710 | 79.839 | 124 | 25 | 0 | 64 | 187 | 12 | 135 | 4.31e-74 | 221 |
| MS.gene50394.t1 | MTR_4g022470 | 95.370 | 108 | 5 | 0 | 64 | 171 | 10 | 117 | 3.93e-71 | 212 |
| MS.gene50394.t1 | MTR_7g058640 | 77.778 | 117 | 26 | 0 | 79 | 195 | 1 | 117 | 5.47e-64 | 195 |
| MS.gene50394.t1 | MTR_5g089370 | 39.151 | 212 | 126 | 3 | 6 | 216 | 3 | 212 | 3.43e-49 | 160 |
| MS.gene50394.t1 | MTR_4g052550 | 36.279 | 215 | 134 | 3 | 5 | 218 | 2 | 214 | 8.14e-46 | 151 |
| MS.gene50394.t1 | MTR_4g115390 | 33.180 | 217 | 136 | 5 | 6 | 216 | 3 | 216 | 1.33e-40 | 138 |
| MS.gene50394.t1 | MTR_4g022550 | 98.387 | 62 | 1 | 0 | 158 | 219 | 10 | 71 | 2.75e-38 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50394.t1 | AT1G04760 | 79.909 | 219 | 44 | 0 | 1 | 219 | 1 | 219 | 6.97e-133 | 372 |
| MS.gene50394.t1 | AT1G04760 | 79.909 | 219 | 44 | 0 | 1 | 219 | 1 | 219 | 6.97e-133 | 372 |
| MS.gene50394.t1 | AT1G04750 | 82.648 | 219 | 38 | 0 | 1 | 219 | 1 | 219 | 7.58e-129 | 362 |
| MS.gene50394.t1 | AT2G32670 | 81.735 | 219 | 40 | 0 | 1 | 219 | 66 | 284 | 1.42e-128 | 364 |
| MS.gene50394.t1 | AT2G33120 | 82.648 | 219 | 38 | 0 | 1 | 219 | 1 | 219 | 2.28e-128 | 361 |
| MS.gene50394.t1 | AT2G33120 | 79.295 | 227 | 39 | 1 | 1 | 219 | 1 | 227 | 3.97e-125 | 353 |
| MS.gene50394.t1 | AT3G54300 | 56.303 | 238 | 85 | 2 | 1 | 219 | 1 | 238 | 1.71e-100 | 291 |
| MS.gene50394.t1 | AT3G54300 | 56.303 | 238 | 85 | 2 | 1 | 219 | 1 | 238 | 1.71e-100 | 291 |
| MS.gene50394.t1 | AT3G54300 | 56.303 | 238 | 85 | 2 | 1 | 219 | 1 | 238 | 1.71e-100 | 291 |
| MS.gene50394.t1 | AT2G33110 | 67.123 | 219 | 68 | 1 | 1 | 219 | 1 | 215 | 1.18e-96 | 281 |
| MS.gene50394.t1 | AT4G15780 | 69.832 | 179 | 53 | 1 | 1 | 178 | 1 | 179 | 6.29e-95 | 275 |
| MS.gene50394.t1 | AT2G33110 | 69.136 | 162 | 50 | 0 | 1 | 162 | 1 | 162 | 7.15e-85 | 250 |
| MS.gene50394.t1 | AT1G04750 | 84.397 | 141 | 22 | 0 | 79 | 219 | 1 | 141 | 2.98e-74 | 221 |
| MS.gene50394.t1 | AT1G04750 | 84.397 | 141 | 22 | 0 | 79 | 219 | 1 | 141 | 2.98e-74 | 221 |
| MS.gene50394.t1 | AT1G04750 | 84.397 | 141 | 22 | 0 | 79 | 219 | 1 | 141 | 2.98e-74 | 221 |
| MS.gene50394.t1 | AT5G11150 | 40.553 | 217 | 123 | 5 | 5 | 218 | 2 | 215 | 9.62e-53 | 169 |
| MS.gene50394.t1 | AT5G11150 | 40.553 | 217 | 123 | 5 | 5 | 218 | 2 | 215 | 1.84e-52 | 169 |
| MS.gene50394.t1 | AT5G22360 | 37.963 | 216 | 130 | 3 | 5 | 218 | 2 | 215 | 9.56e-51 | 164 |
| MS.gene50394.t1 | AT4G32150 | 38.498 | 213 | 128 | 3 | 5 | 216 | 2 | 212 | 3.46e-48 | 157 |
| MS.gene50394.t1 | AT2G25340 | 37.850 | 214 | 128 | 4 | 5 | 216 | 2 | 212 | 2.36e-43 | 145 |
| MS.gene50394.t1 | AT2G33120 | 88.372 | 86 | 10 | 0 | 134 | 219 | 52 | 137 | 3.51e-36 | 124 |
| MS.gene50394.t1 | AT3G24890 | 53.191 | 94 | 38 | 2 | 113 | 200 | 14 | 107 | 5.23e-25 | 95.5 |
| MS.gene50394.t1 | AT3G24890 | 53.125 | 64 | 26 | 1 | 113 | 176 | 14 | 73 | 2.23e-15 | 68.9 |
| MS.gene50394.t1 | AT3G24890 | 53.125 | 64 | 26 | 1 | 113 | 176 | 14 | 73 | 2.23e-15 | 68.9 |
| MS.gene50394.t1 | AT3G24890 | 53.125 | 64 | 26 | 1 | 113 | 176 | 14 | 73 | 2.23e-15 | 68.9 |
| MS.gene50394.t1 | AT3G24890 | 53.125 | 64 | 26 | 1 | 113 | 176 | 14 | 73 | 2.23e-15 | 68.9 |
Find 44 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTCTTAACAAAGAATT+TGG | 0.112791 | 4.4:+79101188 | MS.gene50394:CDS |
| GCTCAAGTTTCTGAAGTTAA+AGG | 0.200850 | 4.4:+79101371 | MS.gene50394:CDS |
| GGGAGAGAAGATTGAGGTTT+TGG | 0.250137 | 4.4:+79102445 | MS.gene50394:CDS |
| ACCACATCTTTCTTCTCAAC+TGG | 0.279528 | 4.4:-79103160 | None:intergenic |
| TTCAGCTTCCTCGTCGATAA+TGG | 0.292725 | 4.4:+79099748 | MS.gene50394:CDS |
| GTTATGTGCAGGTTATTGAT+AGG | 0.320869 | 4.4:+79102423 | MS.gene50394:intron |
| TGCATTTGCTCCTTCAACTT+TGG | 0.326828 | 4.4:-79101299 | None:intergenic |
| ATTTGCAGGCACAAGATTTC+AGG | 0.345983 | 4.4:+79103126 | MS.gene50394:intron |
| ATACGTTCAAGAAAAGCTAT+TGG | 0.353729 | 4.4:-79101110 | None:intergenic |
| ATCATTGATCTATACCTTTG+TGG | 0.389477 | 4.4:+79099597 | MS.gene50394:CDS |
| AACTTCCTGCTTCTAACAAC+AGG | 0.400029 | 4.4:+79099698 | MS.gene50394:CDS |
| TGAAGTTAAAGGAGTTATGA+TGG | 0.406422 | 4.4:+79101382 | MS.gene50394:CDS |
| AACTGAGAACCTTCGCTCTC+AGG | 0.417900 | 4.4:+79102475 | MS.gene50394:CDS |
| GCAATATTGTGTGGAACATC+CGG | 0.431593 | 4.4:+79101319 | MS.gene50394:CDS |
| GGCACAAGATTTCAGGCAGC+AGG | 0.435566 | 4.4:+79103133 | MS.gene50394:intron |
| GCAAGTTTGCTAACTTCCTC+CGG | 0.449150 | 4.4:-79101338 | None:intergenic |
| TACCTTTGTGGCTCGTGGTA+CGG | 0.466886 | 4.4:+79099609 | MS.gene50394:CDS |
| TTATGTGCAGGTTATTGATA+GGG | 0.472672 | 4.4:+79102424 | MS.gene50394:intron |
| AGCTTACTGTGTTGTGGCAG+TGG | 0.485476 | 4.4:+79101067 | MS.gene50394:intron |
| ATTGTTCTTTCTGTGTGCCA+TGG | 0.487473 | 4.4:+79103242 | MS.gene50394:CDS |
| CCACATCTTTCTTCTCAACT+GGG | 0.492600 | 4.4:-79103159 | None:intergenic |
| ATCTATACCTTTGTGGCTCG+TGG | 0.496345 | 4.4:+79099604 | MS.gene50394:CDS |
| AAAGTCTTAACAAAGAATTT+GGG | 0.498770 | 4.4:+79101189 | MS.gene50394:CDS |
| TGATAGGGGAGAGAAGATTG+AGG | 0.506422 | 4.4:+79102439 | MS.gene50394:CDS |
| GTAAACCTGTTGTTAGAAGC+AGG | 0.509943 | 4.4:-79099703 | None:intergenic |
| TTGAAGACACTGTAAAGCTA+TGG | 0.513581 | 4.4:-79099674 | None:intergenic |
| ATGCATTAGACCAAAGTTGA+AGG | 0.514320 | 4.4:+79101289 | MS.gene50394:intron |
| AGGTTTACTTACAACTGTGA+TGG | 0.540715 | 4.4:+79099718 | MS.gene50394:CDS |
| TTTAATAAAAGATATGGTGG+AGG | 0.542291 | 4.4:+79101143 | MS.gene50394:CDS |
| TATGTGCAGGTTATTGATAG+GGG | 0.549992 | 4.4:+79102425 | MS.gene50394:intron |
| GCGGAGTACAGTGACTTCAC+AGG | 0.572690 | 4.4:+79099640 | MS.gene50394:CDS |
| ATAGTTAACAACTGAAGCCA+TGG | 0.593585 | 4.4:-79103259 | None:intergenic |
| CACCGTACCACGAGCCACAA+AGG | 0.597195 | 4.4:-79099611 | None:intergenic |
| TCGTGGTACGGTGATTCTTG+CGG | 0.609688 | 4.4:+79099621 | MS.gene50394:CDS |
| GCACAAGATTTCAGGCAGCA+GGG | 0.625497 | 4.4:+79103134 | MS.gene50394:CDS |
| AGCATCTAACCTGAGAGCGA+AGG | 0.629350 | 4.4:-79102484 | None:intergenic |
| GTTGTGGCAGTGGAGTCTGT+TGG | 0.632770 | 4.4:+79101077 | MS.gene50394:CDS |
| ATTATCGACGAGGAAGCTGA+AGG | 0.649726 | 4.4:-79099746 | None:intergenic |
| CCCAGTTGAGAAGAAAGATG+TGG | 0.664612 | 4.4:+79103159 | MS.gene50394:CDS |
| GGAGCAAATGCAATATTGTG+TGG | 0.673674 | 4.4:+79101310 | MS.gene50394:CDS |
| AAGACACTGTAAAGCTATGG+TGG | 0.678399 | 4.4:-79099671 | None:intergenic |
| TACTGAATCCATTATCGACG+AGG | 0.683208 | 4.4:-79099756 | None:intergenic |
| ATATTGTGTGGAACATCCGG+AGG | 0.702619 | 4.4:+79101322 | MS.gene50394:CDS |
| TATGATGGAAAATATCGACA+AGG | 0.735916 | 4.4:+79101397 | MS.gene50394:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTACTAATAATTTATATT+TGG | + | chr4.4:79100719-79100738 | MS.gene50394:intron | 10.0% |
| !! | TAGATTTAATTAATGTTTAA+TGG | + | chr4.4:79100412-79100431 | MS.gene50394:intron | 10.0% |
| !!! | TAAAAATAAAATGTGATTTT+TGG | + | chr4.4:79100500-79100519 | MS.gene50394:intron | 10.0% |
| !!! | TTTTACAAAACTAAAAAATA+AGG | + | chr4.4:79099949-79099968 | MS.gene50394:intron | 10.0% |
| !! | AAATTTCATATAGTCATAAA+TGG | - | chr4.4:79102106-79102125 | None:intergenic | 15.0% |
| !! | AATATCGATATTATTAACTA+GGG | + | chr4.4:79099867-79099886 | MS.gene50394:intron | 15.0% |
| !! | ATTTACATAAATAAAACTGT+TGG | - | chr4.4:79102546-79102565 | None:intergenic | 15.0% |
| !! | CATACAATATTCATAATTAA+TGG | - | chr4.4:79103066-79103085 | None:intergenic | 15.0% |
| !! | TTAATTATGAATATTGTATG+AGG | + | chr4.4:79103066-79103085 | MS.gene50394:intron | 15.0% |
| !! | TTTAATAAACAATTTAAGCA+AGG | - | chr4.4:79100875-79100894 | None:intergenic | 15.0% |
| !!! | AGATAATTTGTCTTTTTTTT+TGG | + | chr4.4:79100570-79100589 | MS.gene50394:intron | 15.0% |
| !!! | ATCATAAATTTTAAGATAAG+AGG | - | chr4.4:79100946-79100965 | None:intergenic | 15.0% |
| !!! | ATTCTTAAACTTCTATTTTT+TGG | - | chr4.4:79100026-79100045 | None:intergenic | 15.0% |
| !!! | GATGATTTTAATAAAAGATA+TGG | + | chr4.4:79101137-79101156 | MS.gene50394:CDS | 15.0% |
| !!! | TCATAAATTTTAAGATAAGA+GGG | - | chr4.4:79100945-79100964 | None:intergenic | 15.0% |
| !!! | TTCATCTACATATATTTTTT+TGG | + | chr4.4:79100975-79100994 | MS.gene50394:intron | 15.0% |
| !! | AAAAGTCTTAACAAAGAATT+TGG | + | chr4.4:79101188-79101207 | MS.gene50394:CDS | 20.0% |
| !! | AAAATAATCCAATGATGATT+TGG | + | chr4.4:79100525-79100544 | MS.gene50394:intron | 20.0% |
| !! | AAAGTCTTAACAAAGAATTT+GGG | + | chr4.4:79101189-79101208 | MS.gene50394:CDS | 20.0% |
| !! | AATGTGTGTATCAATATATA+TGG | - | chr4.4:79101437-79101456 | None:intergenic | 20.0% |
| !! | ATGCATATAATAATTAGTTC+TGG | + | chr4.4:79102615-79102634 | MS.gene50394:intron | 20.0% |
| !! | ATTGAAATATGAGATGATTA+TGG | + | chr4.4:79102564-79102583 | MS.gene50394:intron | 20.0% |
| !! | CAAAGAAATCATCAATTATA+TGG | - | chr4.4:79101869-79101888 | None:intergenic | 20.0% |
| !! | CAATATCGATATTATTAACT+AGG | + | chr4.4:79099866-79099885 | MS.gene50394:intron | 20.0% |
| !! | GAATTTCATTTAATATCATG+TGG | + | chr4.4:79102377-79102396 | MS.gene50394:intron | 20.0% |
| !! | TCAGTTGTTTAACATTATTA+TGG | + | chr4.4:79102023-79102042 | MS.gene50394:intron | 20.0% |
| !! | TTATTATATATGTTATGTGC+AGG | + | chr4.4:79102412-79102431 | MS.gene50394:intron | 20.0% |
| !! | TTCTCAGTTATTTATTATCT+AGG | + | chr4.4:79103009-79103028 | MS.gene50394:intron | 20.0% |
| !!! | ATCTCAATGTTATAAAGTTT+TGG | + | chr4.4:79102738-79102757 | MS.gene50394:intron | 20.0% |
| !!! | CTTTTATGTATTTATAGAAC+CGG | - | chr4.4:79101762-79101781 | None:intergenic | 20.0% |
| !!! | GATTTTAATAAAAGATATGG+TGG | + | chr4.4:79101140-79101159 | MS.gene50394:CDS | 20.0% |
| !!! | GTAAGTTTTTTTTTCTGTTT+TGG | - | chr4.4:79100100-79100119 | None:intergenic | 20.0% |
| !!! | GTATCAAGATTTTATGAAAT+TGG | - | chr4.4:79102966-79102985 | None:intergenic | 20.0% |
| !!! | TAATCTGATTTTATCAATTG+AGG | - | chr4.4:79100686-79100705 | None:intergenic | 20.0% |
| ! | AAAACTAGATGTGAGAATTT+GGG | - | chr4.4:79102821-79102840 | None:intergenic | 25.0% |
| ! | AAATCTAACGTAATTAACGT+AGG | + | chr4.4:79099998-79100017 | MS.gene50394:intron | 25.0% |
| ! | AACAAGTTCAACAGAAAAAA+AGG | - | chr4.4:79101026-79101045 | None:intergenic | 25.0% |
| ! | AACTGAGACAAAATACTTAA+AGG | - | chr4.4:79102009-79102028 | None:intergenic | 25.0% |
| ! | ATAACATGTAGATACCAATT+CGG | - | chr4.4:79101498-79101517 | None:intergenic | 25.0% |
| ! | ATAATATCGATATTGTCACT+TGG | - | chr4.4:79099861-79099880 | None:intergenic | 25.0% |
| ! | ATTGAGTCGTATCATAAAAA+TGG | - | chr4.4:79101698-79101717 | None:intergenic | 25.0% |
| ! | GAAATTGGAATTATTTGACT+TGG | - | chr4.4:79102951-79102970 | None:intergenic | 25.0% |
| ! | GATATATTCAAAGGAAAAAG+AGG | - | chr4.4:79099829-79099848 | None:intergenic | 25.0% |
| ! | TAGTTATTGTTCCACATATT+AGG | - | chr4.4:79100379-79100398 | None:intergenic | 25.0% |
| ! | TATTTACTTGGTATAGATGT+TGG | + | chr4.4:79100069-79100088 | MS.gene50394:intron | 25.0% |
| ! | TGAAAAAAGTCGTAAAATTC+TGG | - | chr4.4:79101564-79101583 | None:intergenic | 25.0% |
| ! | TTGGAACATGATATATTCAA+AGG | - | chr4.4:79099838-79099857 | None:intergenic | 25.0% |
| ! | TTTAATAAAAGATATGGTGG+AGG | + | chr4.4:79101143-79101162 | MS.gene50394:CDS | 25.0% |
| !! | AATGAAATTCTAGAGACAAT+TGG | - | chr4.4:79102367-79102386 | None:intergenic | 25.0% |
| !! | CATAAATAAAACTGTTGGTT+TGG | - | chr4.4:79102541-79102560 | None:intergenic | 25.0% |
| !!! | CAATGTTATAAAGTTTTGGA+TGG | + | chr4.4:79102742-79102761 | MS.gene50394:intron | 25.0% |
| !!! | CTGGATTTTAAGATTTATGT+CGG | - | chr4.4:79101545-79101564 | None:intergenic | 25.0% |
| !!! | CTGTTTTTTTTATACTGCTA+TGG | - | chr4.4:79101604-79101623 | None:intergenic | 25.0% |
| !!! | TGGATTTTAAGATTTATGTC+GGG | - | chr4.4:79101544-79101563 | None:intergenic | 25.0% |
| !!! | TGTCTTTTTTTTTGGTTTCA+GGG | + | chr4.4:79100578-79100597 | MS.gene50394:intron | 25.0% |
| !!! | TTGTCTTTTTTTTTGGTTTC+AGG | + | chr4.4:79100577-79100596 | MS.gene50394:intron | 25.0% |
| !!! | TTTTAATTGTGATGATGAAG+TGG | + | chr4.4:79100273-79100292 | MS.gene50394:intron | 25.0% |
| AAAATCGCAAGCAAAATTGA+TGG | - | chr4.4:79102167-79102186 | None:intergenic | 30.0% | |
| AAAATCGCAATCAAAATCGA+AGG | - | chr4.4:79102238-79102257 | None:intergenic | 30.0% | |
| ATACGTTCAAGAAAAGCTAT+TGG | - | chr4.4:79101113-79101132 | None:intergenic | 30.0% | |
| ATCATTGATCTATACCTTTG+TGG | + | chr4.4:79099597-79099616 | MS.gene50394:CDS | 30.0% | |
| ATCCTTGCTTAAATTGCTTA+TGG | + | chr4.4:79100899-79100918 | MS.gene50394:intron | 30.0% | |
| CAAAATCTCCAAATCATCAT+TGG | - | chr4.4:79100536-79100555 | None:intergenic | 30.0% | |
| CTTGATACTCAAACACTAAT+GGG | + | chr4.4:79102978-79102997 | MS.gene50394:intron | 30.0% | |
| GAAAACTAGATGTGAGAATT+TGG | - | chr4.4:79102822-79102841 | None:intergenic | 30.0% | |
| GATTGGAATGTCAATTGAAA+TGG | + | chr4.4:79103098-79103117 | MS.gene50394:intron | 30.0% | |
| TAAGTGACCATTAAGTTTCA+AGG | - | chr4.4:79101945-79101964 | None:intergenic | 30.0% | |
| TATGGCTACTAAAGAATATC+TGG | + | chr4.4:79102041-79102060 | MS.gene50394:intron | 30.0% | |
| TATGTGGAACAATAACTAGT+TGG | + | chr4.4:79100381-79100400 | MS.gene50394:intron | 30.0% | |
| TATTAGTGAGCTTCAACATA+TGG | - | chr4.4:79100795-79100814 | None:intergenic | 30.0% | |
| TATTGTGAACTTAGTTCAGT+TGG | - | chr4.4:79100620-79100639 | None:intergenic | 30.0% | |
| TCTTGATACTCAAACACTAA+TGG | + | chr4.4:79102977-79102996 | MS.gene50394:intron | 30.0% | |
| TGAAGTTAAAGGAGTTATGA+TGG | + | chr4.4:79101382-79101401 | MS.gene50394:CDS | 30.0% | |
| TTATGTGCAGGTTATTGATA+GGG | + | chr4.4:79102424-79102443 | MS.gene50394:intron | 30.0% | |
| TTTAGATTGAAGAACCGAAT+TGG | + | chr4.4:79101481-79101500 | MS.gene50394:intron | 30.0% | |
| ! | AGCTTTTCTTGAACGTATTA+AGG | + | chr4.4:79101115-79101134 | MS.gene50394:CDS | 30.0% |
| ! | CAACATCTGAGATATTTACT+TGG | + | chr4.4:79100057-79100076 | MS.gene50394:intron | 30.0% |
| ! | GGTTCTTCAATCTAAAATGT+AGG | - | chr4.4:79101477-79101496 | None:intergenic | 30.0% |
| ! | TATGATGGAAAATATCGACA+AGG | + | chr4.4:79101397-79101416 | MS.gene50394:CDS | 30.0% |
| ! | TCTTTTGCCTTGAAACTTAA+TGG | + | chr4.4:79101935-79101954 | MS.gene50394:intron | 30.0% |
| ! | TGAACTTGTTTGATGATTAG+TGG | + | chr4.4:79101036-79101055 | MS.gene50394:intron | 30.0% |
| ! | TGACAGTAGGTTTTCAAAAT+CGG | - | chr4.4:79102305-79102324 | None:intergenic | 30.0% |
| ! | TTTTATTCTTTCACACCACA+CGG | + | chr4.4:79101790-79101809 | MS.gene50394:intron | 30.0% |
| !! | ATGGTATTTTGAGCAATGTA+TGG | + | chr4.4:79100335-79100354 | MS.gene50394:intron | 30.0% |
| !! | TGGTATTTTGAGCAATGTAT+GGG | + | chr4.4:79100336-79100355 | MS.gene50394:intron | 30.0% |
| !!! | AAATGTAGGTGCTATTTTGT+TGG | - | chr4.4:79101463-79101482 | None:intergenic | 30.0% |
| !!! | GATACGACTCAATTTTAACT+CGG | + | chr4.4:79101705-79101724 | MS.gene50394:intron | 30.0% |
| !!! | GTCTTTTTTTTTGGTTTCAG+GGG | + | chr4.4:79100579-79100598 | MS.gene50394:intron | 30.0% |
| AAGTATTTCGTCAGACATGT+AGG | + | chr4.4:79101978-79101997 | MS.gene50394:intron | 35.0% | |
| AGGTTTACTTACAACTGTGA+TGG | + | chr4.4:79099718-79099737 | MS.gene50394:CDS | 35.0% | |
| ATGAATCAAGTGTCAACAGT+TGG | + | chr4.4:79100452-79100471 | MS.gene50394:intron | 35.0% | |
| ATGCATTAGACCAAAGTTGA+AGG | + | chr4.4:79101289-79101308 | MS.gene50394:intron | 35.0% | |
| ATTAACTAGGGTTCGAACTT+AGG | + | chr4.4:79099879-79099898 | MS.gene50394:intron | 35.0% | |
| CACCATAAGCAATTTAAGCA+AGG | - | chr4.4:79100904-79100923 | None:intergenic | 35.0% | |
| CATTGCTCAAAATACCATCA+AGG | - | chr4.4:79100333-79100352 | None:intergenic | 35.0% | |
| CTAAAGAATATCTGGCATCT+AGG | + | chr4.4:79102049-79102068 | MS.gene50394:intron | 35.0% | |
| GAAAATCCATGCAAAATCGT+AGG | + | chr4.4:79101655-79101674 | MS.gene50394:intron | 35.0% | |
| GTATGAGGATTGTGAATGAT+TGG | + | chr4.4:79103081-79103100 | MS.gene50394:intron | 35.0% | |
| GTATTTATAGAACCGGATCA+CGG | - | chr4.4:79101755-79101774 | None:intergenic | 35.0% | |
| GTTATGTGCAGGTTATTGAT+AGG | + | chr4.4:79102423-79102442 | MS.gene50394:intron | 35.0% | |
| TATGTGCAGGTTATTGATAG+GGG | + | chr4.4:79102425-79102444 | MS.gene50394:intron | 35.0% | |
| TATTTATAGAACCGGATCAC+GGG | - | chr4.4:79101754-79101773 | None:intergenic | 35.0% | |
| TTGAAATGGTATCCATTTGC+AGG | + | chr4.4:79103112-79103131 | MS.gene50394:intron | 35.0% | |
| TTGAAGACACTGTAAAGCTA+TGG | - | chr4.4:79099677-79099696 | None:intergenic | 35.0% | |
| ! | ATCTAGGCTTGAGTATTTTG+TGG | + | chr4.4:79102065-79102084 | MS.gene50394:intron | 35.0% |
| ! | CAAAATCCTACGATTTTGCA+TGG | - | chr4.4:79101664-79101683 | None:intergenic | 35.0% |
| ! | GACAGTAGGTTTTCAAAATC+GGG | - | chr4.4:79102304-79102323 | None:intergenic | 35.0% |
| ! | GCAAAATCGTAGGATTTTGA+AGG | + | chr4.4:79101665-79101684 | MS.gene50394:intron | 35.0% |
| ! | TATCGATATTGTCACTTGGT+TGG | - | chr4.4:79099857-79099876 | None:intergenic | 35.0% |
| ! | TTTCTTTGTGATTTGCATCG+AGG | + | chr4.4:79101881-79101900 | MS.gene50394:intron | 35.0% |
| !! | AGTTGTTCGTGAGTTTTATG+TGG | + | chr4.4:79099909-79099928 | MS.gene50394:intron | 35.0% |
| !! | GATTTTGAAAACCTACTGTC+AGG | + | chr4.4:79102304-79102323 | MS.gene50394:intron | 35.0% |
| !! | GCTCAAGTTTCTGAAGTTAA+AGG | + | chr4.4:79101371-79101390 | MS.gene50394:CDS | 35.0% |
| !!! | TAAAGTTTTGGATGGAGTTG+TGG | + | chr4.4:79102750-79102769 | MS.gene50394:intron | 35.0% |
| AACTTCCTGCTTCTAACAAC+AGG | + | chr4.4:79099698-79099717 | MS.gene50394:CDS | 40.0% | |
| AAGACACTGTAAAGCTATGG+TGG | - | chr4.4:79099674-79099693 | None:intergenic | 40.0% | |
| ACCACATCTTTCTTCTCAAC+TGG | - | chr4.4:79103163-79103182 | None:intergenic | 40.0% | |
| ACTCACACTTGAACCAAACA+AGG | - | chr4.4:79102660-79102679 | None:intergenic | 40.0% | |
| ATGTCGATGACCAAGAGATT+TGG | - | chr4.4:79102779-79102798 | None:intergenic | 40.0% | |
| ATTGTTCTTTCTGTGTGCCA+TGG | + | chr4.4:79103242-79103261 | MS.gene50394:CDS | 40.0% | |
| ATTTGCAGGCACAAGATTTC+AGG | + | chr4.4:79103126-79103145 | MS.gene50394:intron | 40.0% | |
| CATCCAACAATAGAAGTGGA+CGG | - | chr4.4:79100300-79100319 | None:intergenic | 40.0% | |
| CCACATCTTTCTTCTCAACT+GGG | - | chr4.4:79103162-79103181 | None:intergenic | 40.0% | |
| GCAATATTGTGTGGAACATC+CGG | + | chr4.4:79101319-79101338 | MS.gene50394:CDS | 40.0% | |
| GGAGCAAATGCAATATTGTG+TGG | + | chr4.4:79101310-79101329 | MS.gene50394:CDS | 40.0% | |
| GTAAACCTGTTGTTAGAAGC+AGG | - | chr4.4:79099706-79099725 | None:intergenic | 40.0% | |
| TACTGAATCCATTATCGACG+AGG | - | chr4.4:79099759-79099778 | None:intergenic | 40.0% | |
| TCGAATCCCAGTGATCTTTA+GGG | - | chr4.4:79102854-79102873 | None:intergenic | 40.0% | |
| TGAAATCTTGTGCCTGCAAA+TGG | - | chr4.4:79103127-79103146 | None:intergenic | 40.0% | |
| TGCATTTGCTCCTTCAACTT+TGG | - | chr4.4:79101302-79101321 | None:intergenic | 40.0% | |
| TTCCACATATTAGGCACGTT+TGG | - | chr4.4:79100370-79100389 | None:intergenic | 40.0% | |
| TTGAGCAATGTATGGGTCAA+TGG | + | chr4.4:79100343-79100362 | MS.gene50394:intron | 40.0% | |
| TTGATGCCCTAAAGATCACT+GGG | + | chr4.4:79102845-79102864 | MS.gene50394:intron | 40.0% | |
| ! | CAAAATCGGGATTTAGCTTC+AGG | - | chr4.4:79102291-79102310 | None:intergenic | 40.0% |
| ! | GCAAAGCACCTAAACATACA+CGG | - | chr4.4:79102333-79102352 | None:intergenic | 40.0% |
| ! | TTTTGCAGCTTACTGTGTTG+TGG | + | chr4.4:79101061-79101080 | MS.gene50394:intron | 40.0% |
| !! | AGAGAAGATTGAGGTTTTGG+TGG | + | chr4.4:79102448-79102467 | MS.gene50394:CDS | 40.0% |
| ACTCGAATGACGTCCTTGTT+TGG | + | chr4.4:79102644-79102663 | MS.gene50394:intron | 45.0% | |
| ACTCGGTTCATCAATTGACC+TGG | + | chr4.4:79101722-79101741 | MS.gene50394:intron | 45.0% | |
| ATATTGTGTGGAACATCCGG+AGG | + | chr4.4:79101322-79101341 | MS.gene50394:CDS | 45.0% | |
| ATCTATACCTTTGTGGCTCG+TGG | + | chr4.4:79099604-79099623 | MS.gene50394:CDS | 45.0% | |
| ATTATCGACGAGGAAGCTGA+AGG | - | chr4.4:79099749-79099768 | None:intergenic | 45.0% | |
| CAAGTGTCAACAGTTGGCTA+AGG | + | chr4.4:79100458-79100477 | MS.gene50394:intron | 45.0% | |
| CCACCATCCAACAATAGAAG+TGG | - | chr4.4:79100304-79100323 | None:intergenic | 45.0% | |
| CCACTTCTATTGTTGGATGG+TGG | + | chr4.4:79100301-79100320 | MS.gene50394:intron | 45.0% | |
| CCCAGTTGAGAAGAAAGATG+TGG | + | chr4.4:79103159-79103178 | MS.gene50394:CDS | 45.0% | |
| CGTCCACTTCTATTGTTGGA+TGG | + | chr4.4:79100298-79100317 | MS.gene50394:intron | 45.0% | |
| CTCGAATCCCAGTGATCTTT+AGG | - | chr4.4:79102855-79102874 | None:intergenic | 45.0% | |
| GTCCAAACGTGCCTAATATG+TGG | + | chr4.4:79100365-79100384 | MS.gene50394:intron | 45.0% | |
| GTTGATGCCCTAAAGATCAC+TGG | + | chr4.4:79102844-79102863 | MS.gene50394:intron | 45.0% | |
| GTTGTGGTGTCCAAATCTCT+TGG | + | chr4.4:79102766-79102785 | MS.gene50394:intron | 45.0% | |
| TCAGGTGTCCGTGTATGTTT+AGG | + | chr4.4:79102322-79102341 | MS.gene50394:intron | 45.0% | |
| TCTGCACAAGAGATTGACGA+AGG | + | chr4.4:79101815-79101834 | MS.gene50394:intron | 45.0% | |
| TGATAGGGGAGAGAAGATTG+AGG | + | chr4.4:79102439-79102458 | MS.gene50394:CDS | 45.0% | |
| TTCAGCTTCCTCGTCGATAA+TGG | + | chr4.4:79099748-79099767 | MS.gene50394:CDS | 45.0% | |
| ! | AGGCGAACGTGTTGATATGA+TGG | + | chr4.4:79101835-79101854 | MS.gene50394:intron | 45.0% |
| ! | ATCGGGATTTAGCTTCAGGT+CGG | - | chr4.4:79102287-79102306 | None:intergenic | 45.0% |
| ! | GATGGTGGCATTAACCTTGA+TGG | + | chr4.4:79100316-79100335 | MS.gene50394:intron | 45.0% |
| ! | GGGAGAGAAGATTGAGGTTT+TGG | + | chr4.4:79102445-79102464 | MS.gene50394:CDS | 45.0% |
| !! | GCAAGTTTGCTAACTTCCTC+CGG | - | chr4.4:79101341-79101360 | None:intergenic | 45.0% |
| AACTGAGAACCTTCGCTCTC+AGG | + | chr4.4:79102475-79102494 | MS.gene50394:CDS | 50.0% | |
| AGCATCTAACCTGAGAGCGA+AGG | - | chr4.4:79102487-79102506 | None:intergenic | 50.0% | |
| AGCTTACTGTGTTGTGGCAG+TGG | + | chr4.4:79101067-79101086 | MS.gene50394:intron | 50.0% | |
| ATACACGGACACCTGACAGT+AGG | - | chr4.4:79102318-79102337 | None:intergenic | 50.0% | |
| GCACAAGATTTCAGGCAGCA+GGG | + | chr4.4:79103134-79103153 | MS.gene50394:CDS | 50.0% | |
| GGACCGTCCACTTCTATTGT+TGG | + | chr4.4:79100294-79100313 | MS.gene50394:intron | 50.0% | |
| TACCTTTGTGGCTCGTGGTA+CGG | + | chr4.4:79099609-79099628 | MS.gene50394:CDS | 50.0% | |
| TCGTGGTACGGTGATTCTTG+CGG | + | chr4.4:79099621-79099640 | MS.gene50394:CDS | 50.0% | |
| TCTCTTGGTCATCGACATCC+TGG | + | chr4.4:79102781-79102800 | MS.gene50394:intron | 50.0% | |
| ! | GGATTTAGCTTCAGGTCGGA+AGG | - | chr4.4:79102283-79102302 | None:intergenic | 50.0% |
| GCGGAGTACAGTGACTTCAC+AGG | + | chr4.4:79099640-79099659 | MS.gene50394:CDS | 55.0% | |
| GGCACAAGATTTCAGGCAGC+AGG | + | chr4.4:79103133-79103152 | MS.gene50394:intron | 55.0% | |
| GTTGTGGCAGTGGAGTCTGT+TGG | + | chr4.4:79101077-79101096 | MS.gene50394:CDS | 55.0% | |
| TCTCTTGTGCAGAGACCGTG+TGG | - | chr4.4:79101808-79101827 | None:intergenic | 55.0% | |
| TGGGAGCAACTCGATGATCC+AGG | - | chr4.4:79102802-79102821 | None:intergenic | 55.0% | |
| ! | CCTGGTTTGTACCCGTGATC+CGG | + | chr4.4:79101740-79101759 | MS.gene50394:intron | 55.0% |
| CACCGTACCACGAGCCACAA+AGG | - | chr4.4:79099614-79099633 | None:intergenic | 60.0% | |
| CCGGATCACGGGTACAAACC+AGG | - | chr4.4:79101743-79101762 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 79099586 | 79103277 | 79099586 | ID=MS.gene50394 |
| chr4.4 | mRNA | 79099586 | 79103277 | 79099586 | ID=MS.gene50394.t1;Parent=MS.gene50394 |
| chr4.4 | exon | 79099586 | 79099775 | 79099586 | ID=MS.gene50394.t1.exon1;Parent=MS.gene50394.t1 |
| chr4.4 | CDS | 79099586 | 79099775 | 79099586 | ID=cds.MS.gene50394.t1;Parent=MS.gene50394.t1 |
| chr4.4 | exon | 79101069 | 79101210 | 79101069 | ID=MS.gene50394.t1.exon2;Parent=MS.gene50394.t1 |
| chr4.4 | CDS | 79101069 | 79101210 | 79101069 | ID=cds.MS.gene50394.t1;Parent=MS.gene50394.t1 |
| chr4.4 | exon | 79101298 | 79101418 | 79101298 | ID=MS.gene50394.t1.exon3;Parent=MS.gene50394.t1 |
| chr4.4 | CDS | 79101298 | 79101418 | 79101298 | ID=cds.MS.gene50394.t1;Parent=MS.gene50394.t1 |
| chr4.4 | exon | 79102434 | 79102496 | 79102434 | ID=MS.gene50394.t1.exon4;Parent=MS.gene50394.t1 |
| chr4.4 | CDS | 79102434 | 79102496 | 79102434 | ID=cds.MS.gene50394.t1;Parent=MS.gene50394.t1 |
| chr4.4 | exon | 79103134 | 79103277 | 79103134 | ID=MS.gene50394.t1.exon5;Parent=MS.gene50394.t1 |
| chr4.4 | CDS | 79103134 | 79103277 | 79103134 | ID=cds.MS.gene50394.t1;Parent=MS.gene50394.t1 |
| Gene Sequence |
| Protein sequence |
