Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51712.t1 | XP_003598370.1 | 92.3 | 479 | 9 | 1 | 1 | 451 | 1 | 479 | 5.70E-249 | 869.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51712.t1 | Q8RWN2 | 52.3 | 480 | 189 | 4 | 2 | 442 | 3 | 481 | 2.1e-143 | 510.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51712.t1 | G7IVI3 | 92.3 | 479 | 9 | 1 | 1 | 451 | 1 | 479 | 4.1e-249 | 869.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51712.t1 | MTR_3g010850 | 91.892 | 481 | 11 | 1 | 1 | 453 | 1 | 481 | 0.0 | 894 |
| MS.gene51712.t1 | MTR_3g010850 | 97.229 | 433 | 12 | 0 | 21 | 453 | 37 | 469 | 0.0 | 861 |
| MS.gene51712.t1 | MTR_3g010820 | 65.984 | 488 | 130 | 6 | 1 | 453 | 1 | 487 | 0.0 | 646 |
| MS.gene51712.t1 | MTR_8g062990 | 65.496 | 484 | 133 | 5 | 3 | 453 | 5 | 487 | 0.0 | 645 |
| MS.gene51712.t1 | MTR_8g042780 | 62.292 | 480 | 146 | 4 | 6 | 453 | 4 | 480 | 0.0 | 629 |
| MS.gene51712.t1 | MTR_8g042770 | 60.537 | 484 | 159 | 3 | 2 | 453 | 4 | 487 | 0.0 | 628 |
| MS.gene51712.t1 | MTR_8g042870 | 62.190 | 484 | 148 | 4 | 2 | 453 | 4 | 484 | 0.0 | 607 |
| MS.gene51712.t1 | MTR_3g086440 | 65.708 | 452 | 123 | 3 | 2 | 422 | 4 | 454 | 0.0 | 588 |
| MS.gene51712.t1 | MTR_8g042780 | 61.860 | 430 | 130 | 3 | 6 | 404 | 4 | 430 | 0.0 | 564 |
| MS.gene51712.t1 | MTR_8g042820 | 62.544 | 283 | 100 | 2 | 124 | 403 | 34 | 313 | 3.81e-131 | 381 |
| MS.gene51712.t1 | MTR_1157s0010 | 61.842 | 152 | 58 | 0 | 295 | 446 | 1 | 152 | 3.52e-62 | 199 |
| MS.gene51712.t1 | MTR_1194s0010 | 56.849 | 146 | 35 | 1 | 6 | 123 | 4 | 149 | 5.32e-52 | 172 |
| MS.gene51712.t1 | MTR_3g010900 | 52.688 | 93 | 20 | 2 | 335 | 403 | 1 | 93 | 1.24e-18 | 80.9 |
| MS.gene51712.t1 | MTR_8g075280 | 51.250 | 80 | 22 | 3 | 27 | 105 | 121 | 184 | 1.66e-11 | 63.9 |
| MS.gene51712.t1 | MTR_8g075280 | 34.416 | 154 | 72 | 6 | 27 | 176 | 121 | 249 | 2.24e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51712.t1 | AT5G13750 | 52.521 | 476 | 194 | 4 | 2 | 446 | 3 | 477 | 0.0 | 525 |
| MS.gene51712.t1 | AT5G13740 | 51.860 | 484 | 193 | 4 | 2 | 446 | 3 | 485 | 6.62e-177 | 504 |
| MS.gene51712.t1 | AT3G43790 | 54.206 | 428 | 189 | 3 | 21 | 442 | 48 | 474 | 5.04e-170 | 486 |
| MS.gene51712.t1 | AT3G43790 | 54.206 | 428 | 189 | 3 | 21 | 442 | 48 | 474 | 5.04e-170 | 486 |
| MS.gene51712.t1 | AT3G43790 | 53.456 | 434 | 189 | 4 | 21 | 442 | 48 | 480 | 2.46e-167 | 480 |
| MS.gene51712.t1 | AT3G43790 | 53.456 | 434 | 189 | 4 | 21 | 442 | 48 | 480 | 2.46e-167 | 480 |
| MS.gene51712.t1 | AT5G13750 | 55.243 | 391 | 172 | 2 | 59 | 446 | 1 | 391 | 3.47e-163 | 466 |
| MS.gene51712.t1 | AT5G13740 | 51.708 | 439 | 172 | 4 | 2 | 401 | 3 | 440 | 1.81e-160 | 461 |
| MS.gene51712.t1 | AT5G13750 | 50.980 | 408 | 168 | 4 | 2 | 378 | 3 | 409 | 9.59e-152 | 437 |
| MS.gene51712.t1 | AT5G13750 | 50.980 | 408 | 168 | 4 | 2 | 378 | 3 | 409 | 9.59e-152 | 437 |
| MS.gene51712.t1 | AT3G43790 | 53.760 | 359 | 159 | 3 | 21 | 373 | 48 | 405 | 6.97e-138 | 402 |
| MS.gene51712.t1 | AT5G13940 | 45.349 | 86 | 31 | 1 | 239 | 324 | 8 | 77 | 8.18e-16 | 80.5 |
| MS.gene51712.t1 | AT5G13940 | 45.349 | 86 | 31 | 1 | 239 | 324 | 159 | 228 | 9.10e-16 | 80.5 |
Find 100 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCCTTTGGAAATATATT+TGG | 0.129831 | 3.4:-6840892 | None:intergenic |
| GTCGTTCTTGCTCGCATTGC+AGG | 0.159640 | 3.4:+6841958 | MS.gene51712:CDS |
| AGTTCCTATGCTGGTTATTT+AGG | 0.183601 | 3.4:+6839503 | MS.gene51712:CDS |
| TACATAATCATGGAAGATTT+TGG | 0.184692 | 3.4:+6838683 | None:intergenic |
| ACCAGCGTTGGGAGGTTATT+TGG | 0.223348 | 3.4:+6840361 | MS.gene51712:CDS |
| GAGCTTCGACATCTATATTA+TGG | 0.224672 | 3.4:+6839637 | MS.gene51712:CDS |
| AAAATTGAAGCTTTAGAAAA+TGG | 0.231093 | 3.4:+6841333 | MS.gene51712:CDS |
| AATCAAAAGATTCTTTAAAA+TGG | 0.235629 | 3.4:-6842155 | None:intergenic |
| AACAATGATAGACGACATTA+AGG | 0.243682 | 3.4:-6841418 | None:intergenic |
| CGAAAACCTGTTGTGATAAT+AGG | 0.246718 | 3.4:+6839684 | MS.gene51712:CDS |
| ATTTCAGGTTGCAGCTGCTT+GGG | 0.282569 | 3.4:+6840319 | MS.gene51712:intron |
| AGAGAAGAATACCATGCTTT+AGG | 0.288390 | 3.4:+6840212 | MS.gene51712:CDS |
| GGTAATATTCTTGCAGTATC+AGG | 0.312627 | 3.4:+6841659 | MS.gene51712:CDS |
| ATTTCCATACCTCTATTTCA+TGG | 0.316231 | 3.4:+6839146 | MS.gene51712:CDS |
| TACATTGCGCCGCCTCCTGC+TGG | 0.330306 | 3.4:-6842549 | None:intergenic |
| AAGGGGAAGCTTTGCAAGAT+TGG | 0.330711 | 3.4:-6842082 | None:intergenic |
| AGCTGCTTGGGGAGTAGGTT+TGG | 0.331753 | 3.4:+6840331 | MS.gene51712:CDS |
| TTCGTTCTTGGAGGTTTAAA+TGG | 0.333038 | 3.4:+6840051 | MS.gene51712:CDS |
| TATTTCCAAAGGATTCCTTT+TGG | 0.334733 | 3.4:+6840899 | MS.gene51712:CDS |
| ATGAAACATGGTAAGAAGTA+TGG | 0.343134 | 3.4:-6841035 | None:intergenic |
| ATGTCAGCTTGCAAGGTAAT+TGG | 0.359185 | 3.4:+6842525 | MS.gene51712:CDS |
| TTATCCCAAAAGGAATCCTT+TGG | 0.364927 | 3.4:-6840904 | None:intergenic |
| TTGTAGCGATTTCCTGCATT+TGG | 0.364932 | 3.4:+6841078 | MS.gene51712:CDS |
| TTTGTGCTCAATGTTATTGA+AGG | 0.380753 | 3.4:+6843816 | MS.gene51712:CDS |
| GATTTCAGGTTGCAGCTGCT+TGG | 0.382034 | 3.4:+6840318 | MS.gene51712:intron |
| GTTGCAGCTGCTTGGGGAGT+AGG | 0.394368 | 3.4:+6840326 | MS.gene51712:CDS |
| TGGGGAGTAGGTTTGGTCTT+CGG | 0.394927 | 3.4:+6840338 | MS.gene51712:CDS |
| CCCTTCATGACAATGTTGTC+CGG | 0.397110 | 3.4:+6842100 | MS.gene51712:CDS |
| AGCTTCGACATCTATATTAT+GGG | 0.397954 | 3.4:+6839638 | MS.gene51712:CDS |
| ATATTTGGATATTTCTGTAC+TGG | 0.401992 | 3.4:-6840877 | None:intergenic |
| GGAGGTTTAAATGGTTTGCT+TGG | 0.407712 | 3.4:+6840060 | MS.gene51712:CDS |
| TCGTTCTTGCTCGCATTGCA+GGG | 0.415299 | 3.4:+6841959 | MS.gene51712:CDS |
| ATAATTCCTATTATCACAAC+AGG | 0.416010 | 3.4:-6839690 | None:intergenic |
| AGGGGAAGCTTTGCAAGATT+GGG | 0.422814 | 3.4:-6842081 | None:intergenic |
| TTGGTCTTCGGACCAGCGTT+GGG | 0.424792 | 3.4:+6840350 | MS.gene51712:CDS |
| GTTACGATGAGATTCGTTCT+TGG | 0.428895 | 3.4:+6840039 | MS.gene51712:CDS |
| TTGCTAACTGCAGCTTAACT+TGG | 0.445151 | 3.4:+6843093 | MS.gene51712:intron |
| AGGTTAGGCGGTTTGAACTT+TGG | 0.449468 | 3.4:+6841623 | MS.gene51712:CDS |
| GTTGGGAGGTTATTTGGCTC+AGG | 0.476794 | 3.4:+6840367 | MS.gene51712:CDS |
| GCTGAAAGTCCTCGAAGGTT+AGG | 0.476875 | 3.4:+6841608 | MS.gene51712:CDS |
| TGGTTTGCTTGGACCAATGA+AGG | 0.480844 | 3.4:+6840071 | MS.gene51712:CDS |
| TTCAAACCGCCTAACCTTCG+AGG | 0.482253 | 3.4:-6841617 | None:intergenic |
| CATCAAAGAGGGGTAGCAAA+TGG | 0.491220 | 3.4:+6842486 | MS.gene51712:CDS |
| ATGTTTCATTGTATCAGCTA+TGG | 0.502475 | 3.4:+6841049 | MS.gene51712:CDS |
| AACTGCTATGTCAGCTTGCA+AGG | 0.504121 | 3.4:+6842518 | MS.gene51712:CDS |
| TTTGGTCTTCGGACCAGCGT+TGG | 0.508494 | 3.4:+6840349 | MS.gene51712:CDS |
| ATGGATGCTTCTTTCCTCCC+AGG | 0.509789 | 3.4:+6843128 | MS.gene51712:CDS |
| TATTATCATGAGAATTGTCC+TGG | 0.510827 | 3.4:+6838728 | MS.gene51712:CDS |
| GATTTCCTGCATTTGGCTAC+CGG | 0.512707 | 3.4:+6841085 | MS.gene51712:CDS |
| GCCGGACAACATTGTCATGA+AGG | 0.514462 | 3.4:-6842101 | None:intergenic |
| TGCAAGGTAATTGGTCCAGC+AGG | 0.514706 | 3.4:+6842534 | MS.gene51712:CDS |
| ACGATGAGATTCGTTCTTGG+AGG | 0.516830 | 3.4:+6840042 | MS.gene51712:CDS |
| AACAGGATCAACATCAAAGA+GGG | 0.518590 | 3.4:+6842475 | MS.gene51712:intron |
| ATCCACTTACTTATCCCAAA+AGG | 0.518714 | 3.4:-6840914 | None:intergenic |
| ATAGGATCTGCCTACATGCT+TGG | 0.519702 | 3.4:+6839612 | MS.gene51712:intron |
| TTTCAGGTTGCAGCTGCTTG+GGG | 0.522103 | 3.4:+6840320 | MS.gene51712:intron |
| GAAGATATCAGTTCCTATGC+TGG | 0.522329 | 3.4:+6839494 | MS.gene51712:CDS |
| TATGGAAATAGAGATGCTAT+AGG | 0.523760 | 3.4:-6839132 | None:intergenic |
| ACCTACCGGTAGCCAAATGC+AGG | 0.524695 | 3.4:-6841090 | None:intergenic |
| TATCACTCACCATGAAATAG+AGG | 0.534625 | 3.4:-6839155 | None:intergenic |
| ATTTAGGAGATAATTTCTAC+TGG | 0.534952 | 3.4:+6842327 | MS.gene51712:intron |
| GGTATTATAATGTTTCAGCT+TGG | 0.535967 | 3.4:+6841901 | MS.gene51712:CDS |
| AACTTTGGAACTAATGATGT+CGG | 0.538262 | 3.4:+6841638 | MS.gene51712:CDS |
| TATCAGTGAAACTGCTCTGA+GGG | 0.538842 | 3.4:-6843888 | None:intergenic |
| ACAATGATAGACGACATTAA+GGG | 0.543229 | 3.4:-6841417 | None:intergenic |
| CTCACCATGAAATAGAGGTA+TGG | 0.553655 | 3.4:-6839150 | None:intergenic |
| GCTTAACTTGGTCACAAAAG+AGG | 0.553665 | 3.4:+6843105 | MS.gene51712:intron |
| CCGGACAACATTGTCATGAA+GGG | 0.560290 | 3.4:-6842100 | None:intergenic |
| CGATATATACAGTGTAAAGC+CGG | 0.561676 | 3.4:-6842119 | None:intergenic |
| GCCAAATAACCTCCCAACGC+TGG | 0.567969 | 3.4:-6840362 | None:intergenic |
| CAGTTGATTGTCCTAAAGCA+TGG | 0.574814 | 3.4:-6840223 | None:intergenic |
| CGTTCTTGCTCGCATTGCAG+GGG | 0.575187 | 3.4:+6841960 | MS.gene51712:CDS |
| GTAATTGGTCCAGCAGGAGG+CGG | 0.576366 | 3.4:+6842540 | MS.gene51712:CDS |
| GCAATGCGAGCAAGAACGAC+AGG | 0.576894 | 3.4:-6841955 | None:intergenic |
| CTTACCTAAATAACCAGCAT+AGG | 0.577850 | 3.4:-6839507 | None:intergenic |
| GAGCACAAAGAAAACCAGAT+GGG | 0.587663 | 3.4:-6843802 | None:intergenic |
| CGAAGCTCTACCAAGCATGT+AGG | 0.590397 | 3.4:-6839622 | None:intergenic |
| GTCTTCGGACCAGCGTTGGG+AGG | 0.592448 | 3.4:+6840353 | MS.gene51712:CDS |
| GAAGCTTTGCAAGATTGGGA+TGG | 0.593468 | 3.4:-6842077 | None:intergenic |
| ATATCCAAATATATTTCCAA+AGG | 0.595947 | 3.4:+6840888 | MS.gene51712:CDS |
| GGAATGATAGCCGATCGCTA+TGG | 0.606398 | 3.4:+6839660 | MS.gene51712:CDS |
| TCAGTGAAACTGCTCTGAGG+GGG | 0.608467 | 3.4:-6843886 | None:intergenic |
| AGCACAAAGAAAACCAGATG+GGG | 0.612418 | 3.4:-6843801 | None:intergenic |
| AACTTGGTCACAAAAGAGGA+TGG | 0.617641 | 3.4:+6843109 | MS.gene51712:CDS |
| GCTTCGACATCTATATTATG+GGG | 0.629817 | 3.4:+6839639 | MS.gene51712:CDS |
| TGAGCACAAAGAAAACCAGA+TGG | 0.635185 | 3.4:-6843803 | None:intergenic |
| AAACAGGATCAACATCAAAG+AGG | 0.635198 | 3.4:+6842474 | MS.gene51712:intron |
| GAAAGTCCTCGAAGGTTAGG+CGG | 0.636675 | 3.4:+6841611 | MS.gene51712:CDS |
| CGGACAACATTGTCATGAAG+GGG | 0.639468 | 3.4:-6842099 | None:intergenic |
| TTTAGAAAATGGAACCAATG+AGG | 0.646034 | 3.4:+6841344 | MS.gene51712:CDS |
| ATATCAGTGAAACTGCTCTG+AGG | 0.650430 | 3.4:-6843889 | None:intergenic |
| AAGGTAATTGGTCCAGCAGG+AGG | 0.651634 | 3.4:+6842537 | MS.gene51712:CDS |
| CAGTGAAACTGCTCTGAGGG+GGG | 0.656061 | 3.4:-6843885 | None:intergenic |
| ATCAGTGAAACTGCTCTGAG+GGG | 0.664864 | 3.4:-6843887 | None:intergenic |
| CATTCTGCAGAATAAAGCAG+TGG | 0.669908 | 3.4:+6842356 | MS.gene51712:CDS |
| TATGGGCTGAAAGTCCTCGA+AGG | 0.690573 | 3.4:+6841603 | MS.gene51712:CDS |
| ACAGGATCAACATCAAAGAG+GGG | 0.699202 | 3.4:+6842476 | MS.gene51712:intron |
| ATAGCTGATACAATGAAACA+TGG | 0.704557 | 3.4:-6841047 | None:intergenic |
| GCACAAAGAAAACCAGATGG+GGG | 0.709624 | 3.4:-6843800 | None:intergenic |
| TTAGTTGAGTCATACCTGGG+AGG | 0.730031 | 3.4:-6843142 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTAGTAGTATTAATA+AGG | - | chr3.4:6840611-6840630 | None:intergenic | 10.0% |
| !! | ATATGAAAAAATTATACAAA+GGG | + | chr3.4:6840718-6840737 | MS.gene51712:intron | 10.0% |
| !! | TAAATATGAAATATTTGAAT+GGG | - | chr3.4:6842879-6842898 | None:intergenic | 10.0% |
| !! | TATATGAAAAAATTATACAA+AGG | + | chr3.4:6840717-6840736 | MS.gene51712:intron | 10.0% |
| !! | TCTATATATTTATTAAGATT+TGG | + | chr3.4:6841705-6841724 | MS.gene51712:intron | 10.0% |
| !!! | ATTTAAAAATAAGTTGAAAA+CGG | - | chr3.4:6839851-6839870 | None:intergenic | 10.0% |
| !!! | TAATAAATATTCACAAATTT+TGG | + | chr3.4:6839295-6839314 | MS.gene51712:intron | 10.0% |
| !!! | TAATTTTTCTATATAATATC+AGG | + | chr3.4:6839442-6839461 | MS.gene51712:intron | 10.0% |
| !!! | TTAATACTACTAATTTATTT+TGG | + | chr3.4:6840613-6840632 | MS.gene51712:intron | 10.0% |
| !! | AAATGTAGAATAAGAAAAAT+AGG | - | chr3.4:6841562-6841581 | None:intergenic | 15.0% |
| !! | AACAATTAAAAACATAATAG+AGG | - | chr3.4:6840969-6840988 | None:intergenic | 15.0% |
| !! | CTAAATATGAAATATTTGAA+TGG | - | chr3.4:6842880-6842899 | None:intergenic | 15.0% |
| !! | TATATATTTCATGTTGAAAA+AGG | + | chr3.4:6840765-6840784 | MS.gene51712:intron | 15.0% |
| !! | TTAAAAAATCATTTATTCCA+AGG | - | chr3.4:6839401-6839420 | None:intergenic | 15.0% |
| !!! | AATCAAAAGATTCTTTAAAA+TGG | - | chr3.4:6842158-6842177 | None:intergenic | 15.0% |
| !!! | TTAGAAATGTTTTCAATATA+TGG | + | chr3.4:6838795-6838814 | MS.gene51712:intron | 15.0% |
| !! | AAAACACTATATTAAATGTG+TGG | + | chr3.4:6840102-6840121 | MS.gene51712:intron | 20.0% |
| !! | AATATAAGCTTTCATTTCTT+TGG | + | chr3.4:6840542-6840561 | MS.gene51712:intron | 20.0% |
| !! | ATAAAAAGGATACTGAAATA+TGG | - | chr3.4:6841222-6841241 | None:intergenic | 20.0% |
| !! | ATAGCAATTAGATAATAAAG+TGG | - | chr3.4:6842781-6842800 | None:intergenic | 20.0% |
| !! | ATATCCAAATATATTTCCAA+AGG | + | chr3.4:6840888-6840907 | MS.gene51712:CDS | 20.0% |
| !! | ATATGTATAAGTCAAATAGA+AGG | - | chr3.4:6842596-6842615 | None:intergenic | 20.0% |
| !! | ATGTCTTCTTATAATATCAA+TGG | + | chr3.4:6839950-6839969 | MS.gene51712:intron | 20.0% |
| !! | CTTAATATTGTTGAAAAATG+TGG | - | chr3.4:6843366-6843385 | None:intergenic | 20.0% |
| !! | GACATATCATCATAATATTA+AGG | - | chr3.4:6841198-6841217 | None:intergenic | 20.0% |
| !! | GTGAATATTTATTACAAAGA+TGG | - | chr3.4:6839289-6839308 | None:intergenic | 20.0% |
| !! | TTCAAAGAAATGATAAAGAA+AGG | - | chr3.4:6840260-6840279 | None:intergenic | 20.0% |
| !! | TTCTATATAATATCAGGTAA+AGG | + | chr3.4:6839448-6839467 | MS.gene51712:intron | 20.0% |
| !!! | AAAATTGAAGCTTTAGAAAA+TGG | + | chr3.4:6841333-6841352 | MS.gene51712:CDS | 20.0% |
| !!! | AACATCTTTTTTTAATTCCT+TGG | - | chr3.4:6838771-6838790 | None:intergenic | 20.0% |
| !!! | AGAAACAATATTTTAAACTG+CGG | - | chr3.4:6843420-6843439 | None:intergenic | 20.0% |
| !!! | TATGACTTACTTTTTTTGTT+TGG | + | chr3.4:6842450-6842469 | MS.gene51712:intron | 20.0% |
| !!! | TTAAGTAAGAAAGTATTCAA+TGG | + | chr3.4:6842743-6842762 | MS.gene51712:intron | 20.0% |
| !!! | TTAAGTTGTTGATTCAAAAA+CGG | + | chr3.4:6839922-6839941 | MS.gene51712:intron | 20.0% |
| !!! | TTTGAAGATTTTCTCATTAT+GGG | + | chr3.4:6841586-6841605 | MS.gene51712:intron | 20.0% |
| !!! | TTTTGAAGATTTTCTCATTA+TGG | + | chr3.4:6841585-6841604 | MS.gene51712:intron | 20.0% |
| ! | AAACAGAAACATCTTTAAGT+AGG | - | chr3.4:6841494-6841513 | None:intergenic | 25.0% |
| ! | AAATATGCAATGACAAGAAA+TGG | - | chr3.4:6842725-6842744 | None:intergenic | 25.0% |
| ! | AAGAATAAGCCTATTAATGA+AGG | - | chr3.4:6840181-6840200 | None:intergenic | 25.0% |
| ! | AGTTTGAATCATTACAACAA+TGG | - | chr3.4:6840291-6840310 | None:intergenic | 25.0% |
| ! | ATAATTCCTATTATCACAAC+AGG | - | chr3.4:6839693-6839712 | None:intergenic | 25.0% |
| ! | ATCTGAGTATTTGTCATAAA+AGG | - | chr3.4:6841996-6842015 | None:intergenic | 25.0% |
| ! | ATTTAGGAGATAATTTCTAC+TGG | + | chr3.4:6842327-6842346 | MS.gene51712:intron | 25.0% |
| ! | GAAAGCTTATATTTAGATTG+AGG | - | chr3.4:6840535-6840554 | None:intergenic | 25.0% |
| ! | GTAATACTCTATTCCAAATT+GGG | + | chr3.4:6840787-6840806 | MS.gene51712:intron | 25.0% |
| ! | TACAAAGGGACTTATAAAAA+CGG | + | chr3.4:6840732-6840751 | MS.gene51712:intron | 25.0% |
| ! | TATAACATTGCAGAGTAAAA+AGG | - | chr3.4:6843040-6843059 | None:intergenic | 25.0% |
| ! | TCAAACTATAATCTGATTTC+AGG | + | chr3.4:6840304-6840323 | MS.gene51712:intron | 25.0% |
| ! | TCATAACTTCCTTCATTAAT+AGG | + | chr3.4:6840169-6840188 | MS.gene51712:intron | 25.0% |
| ! | TGTCTTCATCATATATTTGT+AGG | + | chr3.4:6842048-6842067 | MS.gene51712:intron | 25.0% |
| ! | TGTGATTGTGAAAATGTTAT+AGG | + | chr3.4:6839594-6839613 | MS.gene51712:intron | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+TGG | - | chr3.4:6838970-6838989 | None:intergenic | 25.0% |
| ! | TTCCAAGGATTAATACAATT+AGG | - | chr3.4:6839386-6839405 | None:intergenic | 25.0% |
| ! | TTCCTAATTGTATTAATCCT+TGG | + | chr3.4:6839381-6839400 | MS.gene51712:intron | 25.0% |
| ! | TTGAAATGCTTAGTCTAATT+AGG | + | chr3.4:6843201-6843220 | MS.gene51712:intron | 25.0% |
| !! | ACTAACTGTTTTCTTTTTGA+TGG | + | chr3.4:6842304-6842323 | MS.gene51712:intron | 25.0% |
| !! | ATATTTGGATATTTCTGTAC+TGG | - | chr3.4:6840880-6840899 | None:intergenic | 25.0% |
| !! | ATTTCAGTATCCTTTTTATG+TGG | + | chr3.4:6841223-6841242 | MS.gene51712:intron | 25.0% |
| !! | GAATCCTTTGGAAATATATT+TGG | - | chr3.4:6840895-6840914 | None:intergenic | 25.0% |
| !! | GTAATTTTCAACACACTATT+TGG | + | chr3.4:6839991-6840010 | MS.gene51712:CDS | 25.0% |
| !! | GTTAATTTGAGCTTATTTAC+TGG | + | chr3.4:6839772-6839791 | MS.gene51712:intron | 25.0% |
| !! | TAAGCACTTTTAATCTAGTT+TGG | + | chr3.4:6839797-6839816 | MS.gene51712:intron | 25.0% |
| !! | TATCCTTTTTATGTGGTTTT+CGG | + | chr3.4:6841230-6841249 | MS.gene51712:intron | 25.0% |
| !! | TTCATTTTCTTTTCCCAATT+TGG | - | chr3.4:6840803-6840822 | None:intergenic | 25.0% |
| !!! | AAGCACTTTTAATCTAGTTT+GGG | + | chr3.4:6839798-6839817 | MS.gene51712:intron | 25.0% |
| !!! | AAGTTTTGACAAATGAAACT+TGG | - | chr3.4:6840998-6841017 | None:intergenic | 25.0% |
| !!! | ACTTTTTTTGTTTGGAAAAC+AGG | + | chr3.4:6842458-6842477 | MS.gene51712:intron | 25.0% |
| !!! | GTTTTCTTTTTGATGGATTT+AGG | + | chr3.4:6842311-6842330 | MS.gene51712:intron | 25.0% |
| !!! | TTCTAAAGCTTCAATTTTGT+TGG | - | chr3.4:6841331-6841350 | None:intergenic | 25.0% |
| !!! | TTTAGATCATTAGTACTGAT+AGG | - | chr3.4:6841262-6841281 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTGTTTTGTTGAT+AGG | + | chr3.4:6843544-6843563 | MS.gene51712:intron | 25.0% |
| AAACCGAAAACCACATAAAA+AGG | - | chr3.4:6841236-6841255 | None:intergenic | 30.0% | |
| AAATTAGTTGAGTCATACCT+GGG | - | chr3.4:6843148-6843167 | None:intergenic | 30.0% | |
| AACAATGATAGACGACATTA+AGG | - | chr3.4:6841421-6841440 | None:intergenic | 30.0% | |
| ACAATGATAGACGACATTAA+GGG | - | chr3.4:6841420-6841439 | None:intergenic | 30.0% | |
| AGCTTCGACATCTATATTAT+GGG | + | chr3.4:6839638-6839657 | MS.gene51712:CDS | 30.0% | |
| ATAGCTGATACAATGAAACA+TGG | - | chr3.4:6841050-6841069 | None:intergenic | 30.0% | |
| ATATATAGTTGCCCTCTTTA+TGG | + | chr3.4:6841153-6841172 | MS.gene51712:intron | 30.0% | |
| ATGAAACATGGTAAGAAGTA+TGG | - | chr3.4:6841038-6841057 | None:intergenic | 30.0% | |
| ATGAAAGCCTCCTAAAAAAT+TGG | + | chr3.4:6841394-6841413 | MS.gene51712:CDS | 30.0% | |
| ATGTGAGATAAAGACATAAC+AGG | - | chr3.4:6839191-6839210 | None:intergenic | 30.0% | |
| ATGTTTCATTGTATCAGCTA+TGG | + | chr3.4:6841049-6841068 | MS.gene51712:CDS | 30.0% | |
| ATTGAGGTAGTACCTAAATT+TGG | - | chr3.4:6840519-6840538 | None:intergenic | 30.0% | |
| ATTTCCATACCTCTATTTCA+TGG | + | chr3.4:6839146-6839165 | MS.gene51712:CDS | 30.0% | |
| CTTGATCGATCAATCATAAA+TGG | + | chr3.4:6841821-6841840 | MS.gene51712:intron | 30.0% | |
| GGTAATACTCTATTCCAAAT+TGG | + | chr3.4:6840786-6840805 | MS.gene51712:intron | 30.0% | |
| GGTATTATAATGTTTCAGCT+TGG | + | chr3.4:6841901-6841920 | MS.gene51712:CDS | 30.0% | |
| TAAAACATCTGCATCAACAT+AGG | + | chr3.4:6841278-6841297 | MS.gene51712:intron | 30.0% | |
| TAGTAACTTCTGTTTGAACT+TGG | - | chr3.4:6842700-6842719 | None:intergenic | 30.0% | |
| TATGGAAATAGAGATGCTAT+AGG | - | chr3.4:6839135-6839154 | None:intergenic | 30.0% | |
| TATTATCATGAGAATTGTCC+TGG | + | chr3.4:6838728-6838747 | MS.gene51712:CDS | 30.0% | |
| TTAGAGCTAAAGCAAAAGAA+AGG | + | chr3.4:6843458-6843477 | MS.gene51712:intron | 30.0% | |
| TTGAGGTAGTACCTAAATTT+GGG | - | chr3.4:6840518-6840537 | None:intergenic | 30.0% | |
| TTTAGAAAATGGAACCAATG+AGG | + | chr3.4:6841344-6841363 | MS.gene51712:CDS | 30.0% | |
| TTTGTGCTCAATGTTATTGA+AGG | + | chr3.4:6843816-6843835 | MS.gene51712:CDS | 30.0% | |
| ! | AATTGACTTTGCTAAAACTC+AGG | + | chr3.4:6842237-6842256 | MS.gene51712:intron | 30.0% |
| ! | ATTTCCAAAGGATTCCTTTT+GGG | + | chr3.4:6840900-6840919 | MS.gene51712:CDS | 30.0% |
| ! | GTAATTATATGTGTTGGTGT+CGG | - | chr3.4:6838964-6838983 | None:intergenic | 30.0% |
| ! | TATTTCCAAAGGATTCCTTT+TGG | + | chr3.4:6840899-6840918 | MS.gene51712:CDS | 30.0% |
| ! | TGTTTTTCATTTCTTCCTTC+TGG | + | chr3.4:6840402-6840421 | MS.gene51712:intron | 30.0% |
| ! | TTCAGATTAAAGGTGTGTTT+GGG | + | chr3.4:6842814-6842833 | MS.gene51712:intron | 30.0% |
| !! | AACTTTGGAACTAATGATGT+CGG | + | chr3.4:6841638-6841657 | MS.gene51712:CDS | 30.0% |
| !! | AATATTTTAAACTGCGGTAG+CGG | - | chr3.4:6843414-6843433 | None:intergenic | 30.0% |
| !! | CTTATTTTTCTCATCCTCAT+TGG | - | chr3.4:6841361-6841380 | None:intergenic | 30.0% |
| !! | GTTTTGAATGATACCTTCAT+TGG | - | chr3.4:6840087-6840106 | None:intergenic | 30.0% |
| !! | TAATTAGTGATAGCACTGAT+AGG | - | chr3.4:6839066-6839085 | None:intergenic | 30.0% |
| !! | TGACTCAACTAATTTGTTTG+AGG | + | chr3.4:6843153-6843172 | MS.gene51712:intron | 30.0% |
| !!! | ACATTAAGGGCCAATTTTTT+AGG | - | chr3.4:6841407-6841426 | None:intergenic | 30.0% |
| !!! | TTTTTCTTTTGAGATGCACT+AGG | + | chr3.4:6839748-6839767 | MS.gene51712:intron | 30.0% |
| AAACAGGATCAACATCAAAG+AGG | + | chr3.4:6842474-6842493 | MS.gene51712:intron | 35.0% | |
| AACAGGATCAACATCAAAGA+GGG | + | chr3.4:6842475-6842494 | MS.gene51712:intron | 35.0% | |
| ACACCTGAACAAGTTTAGTA+TGG | - | chr3.4:6841880-6841899 | None:intergenic | 35.0% | |
| AGAGAAGAATACCATGCTTT+AGG | + | chr3.4:6840212-6840231 | MS.gene51712:CDS | 35.0% | |
| ATAGAAGGTAACGAAAGCAA+AGG | - | chr3.4:6842581-6842600 | None:intergenic | 35.0% | |
| ATCCACTTACTTATCCCAAA+AGG | - | chr3.4:6840917-6840936 | None:intergenic | 35.0% | |
| ATTAGTGTCTTATCCACTCA+TGG | + | chr3.4:6843229-6843248 | MS.gene51712:intron | 35.0% | |
| CAAATTAGTTGAGTCATACC+TGG | - | chr3.4:6843149-6843168 | None:intergenic | 35.0% | |
| CCTCTTGAAAAAGTTCTGTA+TGG | + | chr3.4:6842412-6842431 | MS.gene51712:intron | 35.0% | |
| CGAAAACCTGTTGTGATAAT+AGG | + | chr3.4:6839684-6839703 | MS.gene51712:CDS | 35.0% | |
| CGATAAAGGGTTATGAAGAA+AGG | - | chr3.4:6841737-6841756 | None:intergenic | 35.0% | |
| CGATATATACAGTGTAAAGC+CGG | - | chr3.4:6842122-6842141 | None:intergenic | 35.0% | |
| CTACAGAGTCATTAGAGTTA+AGG | + | chr3.4:6843717-6843736 | MS.gene51712:intron | 35.0% | |
| CTATGTGACAATGTAGAGTT+CGG | - | chr3.4:6843577-6843596 | None:intergenic | 35.0% | |
| CTGATAGGAACTATGAAACA+CGG | - | chr3.4:6839051-6839070 | None:intergenic | 35.0% | |
| CTTACCTAAATAACCAGCAT+AGG | - | chr3.4:6839510-6839529 | None:intergenic | 35.0% | |
| GAACCAAAAATTGAAACCGT+AGG | - | chr3.4:6843304-6843323 | None:intergenic | 35.0% | |
| GAATTCAACAAGATACCTAC+CGG | - | chr3.4:6841107-6841126 | None:intergenic | 35.0% | |
| GAGCTTCGACATCTATATTA+TGG | + | chr3.4:6839637-6839656 | MS.gene51712:CDS | 35.0% | |
| GCACTAACACTTCAGATTAA+AGG | + | chr3.4:6842804-6842823 | MS.gene51712:intron | 35.0% | |
| GCTTCGACATCTATATTATG+GGG | + | chr3.4:6839639-6839658 | MS.gene51712:CDS | 35.0% | |
| GGTAATATTCTTGCAGTATC+AGG | + | chr3.4:6841659-6841678 | MS.gene51712:CDS | 35.0% | |
| TAGAAGGTAACGAAAGCAAA+GGG | - | chr3.4:6842580-6842599 | None:intergenic | 35.0% | |
| TATCACTCACCATGAAATAG+AGG | - | chr3.4:6839158-6839177 | None:intergenic | 35.0% | |
| TATCATTCCTTGGCGATAAA+GGG | - | chr3.4:6841750-6841769 | None:intergenic | 35.0% | |
| TCTGTACAACACACATGTTA+AGG | - | chr3.4:6842621-6842640 | None:intergenic | 35.0% | |
| TGCAGTTGTAGCTTAATCAA+TGG | + | chr3.4:6843329-6843348 | MS.gene51712:intron | 35.0% | |
| TGTAAGTACATATGCAACTG+AGG | + | chr3.4:6839718-6839737 | MS.gene51712:intron | 35.0% | |
| TTATCCCAAAAGGAATCCTT+TGG | - | chr3.4:6840907-6840926 | None:intergenic | 35.0% | |
| TTCGTTCTTGGAGGTTTAAA+TGG | + | chr3.4:6840051-6840070 | MS.gene51712:CDS | 35.0% | |
| TTTGCTAAAACTCAGGAGAT+CGG | + | chr3.4:6842244-6842263 | MS.gene51712:intron | 35.0% | |
| ! | AACGTCGTGGATTTTTAACA+TGG | + | chr3.4:6840442-6840461 | MS.gene51712:intron | 35.0% |
| ! | ACCTGCACATAAACTTTTAC+GGG | + | chr3.4:6841772-6841791 | MS.gene51712:intron | 35.0% |
| ! | ACTTTTGAACATTCAACTGC+AGG | + | chr3.4:6843777-6843796 | MS.gene51712:intron | 35.0% |
| ! | AGTTCCTATGCTGGTTATTT+AGG | + | chr3.4:6839503-6839522 | MS.gene51712:CDS | 35.0% |
| ! | CACCTGCACATAAACTTTTA+CGG | + | chr3.4:6841771-6841790 | MS.gene51712:intron | 35.0% |
| ! | CTGAACTGTTTTATACCAGA+AGG | - | chr3.4:6840420-6840439 | None:intergenic | 35.0% |
| ! | CTTCAGATTAAAGGTGTGTT+TGG | + | chr3.4:6842813-6842832 | MS.gene51712:intron | 35.0% |
| ! | GAACCATACTAAACTTGTTC+AGG | + | chr3.4:6841874-6841893 | MS.gene51712:intron | 35.0% |
| ! | GGTTTTCTTTCAATCAGGAA+TGG | - | chr3.4:6843867-6843886 | None:intergenic | 35.0% |
| ! | TACTAAACTTGTTCAGGTGT+CGG | + | chr3.4:6841880-6841899 | MS.gene51712:intron | 35.0% |
| ! | TCAGATTAAAGGTGTGTTTG+GGG | + | chr3.4:6842815-6842834 | MS.gene51712:intron | 35.0% |
| ! | TCATTACAACAATGGTGATG+TGG | - | chr3.4:6840283-6840302 | None:intergenic | 35.0% |
| ! | TTAGGAGGCTTTCATCTTTT+TGG | - | chr3.4:6841389-6841408 | None:intergenic | 35.0% |
| !! | CTCAACTAATTTGTTTGAGG+AGG | + | chr3.4:6843156-6843175 | MS.gene51712:intron | 35.0% |
| !! | TCATGATATTGCTTTTGCAG+AGG | + | chr3.4:6841458-6841477 | MS.gene51712:CDS | 35.0% |
| !!! | CCATACAGAACTTTTTCAAG+AGG | - | chr3.4:6842415-6842434 | None:intergenic | 35.0% |
| !!! | TTAAGGGCCAATTTTTTAGG+AGG | - | chr3.4:6841404-6841423 | None:intergenic | 35.0% |
| !!! | TTCCTTTTGGGATAAGTAAG+TGG | + | chr3.4:6840912-6840931 | MS.gene51712:intron | 35.0% |
| AAACAGTTCAGAAAACGTCG+TGG | + | chr3.4:6840429-6840448 | MS.gene51712:intron | 40.0% | |
| AACTTGGTCACAAAAGAGGA+TGG | + | chr3.4:6843109-6843128 | MS.gene51712:CDS | 40.0% | |
| AAGTACATATGCAACTGAGG+TGG | + | chr3.4:6839721-6839740 | MS.gene51712:intron | 40.0% | |
| ACAACCAACGAGCAATATTG+AGG | + | chr3.4:6842200-6842219 | MS.gene51712:intron | 40.0% | |
| ACAGGATCAACATCAAAGAG+GGG | + | chr3.4:6842476-6842495 | MS.gene51712:intron | 40.0% | |
| ACATGAAATGTTCATGCTGC+AGG | + | chr3.4:6839350-6839369 | MS.gene51712:intron | 40.0% | |
| ACCCGTAAAAGTTTATGTGC+AGG | - | chr3.4:6841776-6841795 | None:intergenic | 40.0% | |
| AGCACAAAGAAAACCAGATG+GGG | - | chr3.4:6843804-6843823 | None:intergenic | 40.0% | |
| ATGTCAGCTTGCAAGGTAAT+TGG | + | chr3.4:6842525-6842544 | MS.gene51712:CDS | 40.0% | |
| ATTTGGGAACACAGATGGAA+TGG | - | chr3.4:6840502-6840521 | None:intergenic | 40.0% | |
| CAACCAGTGCAAAAAATCTG+TGG | + | chr3.4:6841931-6841950 | MS.gene51712:CDS | 40.0% | |
| CAGTTGATTGTCCTAAAGCA+TGG | - | chr3.4:6840226-6840245 | None:intergenic | 40.0% | |
| CATTCTGCAGAATAAAGCAG+TGG | + | chr3.4:6842356-6842375 | MS.gene51712:CDS | 40.0% | |
| CCACTCATGGTATGTTCATT+AGG | + | chr3.4:6843242-6843261 | MS.gene51712:intron | 40.0% | |
| CCATCCAAAAACTTGTGCAA+AGG | - | chr3.4:6840017-6840036 | None:intergenic | 40.0% | |
| CCATCTGTGTTCCCAAATTT+AGG | + | chr3.4:6840504-6840523 | MS.gene51712:intron | 40.0% | |
| CCTAAATTTGGGAACACAGA+TGG | - | chr3.4:6840507-6840526 | None:intergenic | 40.0% | |
| CCTAATGAACATACCATGAG+TGG | - | chr3.4:6843245-6843264 | None:intergenic | 40.0% | |
| CTATCATTCCTTGGCGATAA+AGG | - | chr3.4:6841751-6841770 | None:intergenic | 40.0% | |
| CTCACCATGAAATAGAGGTA+TGG | - | chr3.4:6839153-6839172 | None:intergenic | 40.0% | |
| GAAGATATCAGTTCCTATGC+TGG | + | chr3.4:6839494-6839513 | MS.gene51712:CDS | 40.0% | |
| GACTATGAAACACTGACACA+AGG | - | chr3.4:6842933-6842952 | None:intergenic | 40.0% | |
| GAGCAATATTGAGGTCGAAA+AGG | + | chr3.4:6842209-6842228 | MS.gene51712:intron | 40.0% | |
| GAGCACAAAGAAAACCAGAT+GGG | - | chr3.4:6843805-6843824 | None:intergenic | 40.0% | |
| GCATTGAAACCTTCGATTGA+AGG | - | chr3.4:6843683-6843702 | None:intergenic | 40.0% | |
| GGACTTATAAAAACGGACGA+AGG | + | chr3.4:6840739-6840758 | MS.gene51712:intron | 40.0% | |
| GTTACGATGAGATTCGTTCT+TGG | + | chr3.4:6840039-6840058 | MS.gene51712:CDS | 40.0% | |
| TCAAAACTTAACATCCCTCC+AGG | + | chr3.4:6841009-6841028 | MS.gene51712:intron | 40.0% | |
| TGAGAATTGTCCTGGTTGTA+AGG | + | chr3.4:6838736-6838755 | MS.gene51712:intron | 40.0% | |
| TGAGCACAAAGAAAACCAGA+TGG | - | chr3.4:6843806-6843825 | None:intergenic | 40.0% | |
| TGTAACAGCATGTGCCAATA+TGG | + | chr3.4:6843633-6843652 | MS.gene51712:intron | 40.0% | |
| TTCATAACCCTTTATCGCCA+AGG | + | chr3.4:6841740-6841759 | MS.gene51712:intron | 40.0% | |
| TTGCTAACTGCAGCTTAACT+TGG | + | chr3.4:6843093-6843112 | MS.gene51712:intron | 40.0% | |
| TTGTAGCGATTTCCTGCATT+TGG | + | chr3.4:6841078-6841097 | MS.gene51712:CDS | 40.0% | |
| ! | AAGAAGTATGGAAACCTGGA+GGG | - | chr3.4:6841026-6841045 | None:intergenic | 40.0% |
| ! | ATTGAAGGCATGCTAAGTGT+CGG | - | chr3.4:6843668-6843687 | None:intergenic | 40.0% |
| ! | CGACCTACGGTTTCAATTTT+TGG | + | chr3.4:6843298-6843317 | MS.gene51712:intron | 40.0% |
| ! | GCTTAACTTGGTCACAAAAG+AGG | + | chr3.4:6843105-6843124 | MS.gene51712:intron | 40.0% |
| ! | TAAGAAGTATGGAAACCTGG+AGG | - | chr3.4:6841027-6841046 | None:intergenic | 40.0% |
| ! | TGGTAAGAAGTATGGAAACC+TGG | - | chr3.4:6841030-6841049 | None:intergenic | 40.0% |
| !! | CCTTTGCACAAGTTTTTGGA+TGG | + | chr3.4:6840014-6840033 | MS.gene51712:CDS | 40.0% |
| !! | GGAGGTTTAAATGGTTTGCT+TGG | + | chr3.4:6840060-6840079 | MS.gene51712:CDS | 40.0% |
| !! | TTGGCCTTTGCACAAGTTTT+TGG | + | chr3.4:6840010-6840029 | MS.gene51712:CDS | 40.0% |
| AACTGCTATGTCAGCTTGCA+AGG | + | chr3.4:6842518-6842537 | MS.gene51712:CDS | 45.0% | |
| AAGGGGAAGCTTTGCAAGAT+TGG | - | chr3.4:6842085-6842104 | None:intergenic | 45.0% | |
| ACGATGAGATTCGTTCTTGG+AGG | + | chr3.4:6840042-6840061 | MS.gene51712:CDS | 45.0% | |
| ACTGCTGAAGACAGTAGAAC+AGG | - | chr3.4:6843520-6843539 | None:intergenic | 45.0% | |
| AGAAGTCGCACACCATAAAG+AGG | - | chr3.4:6841168-6841187 | None:intergenic | 45.0% | |
| AGCATGTGCCAATATGGTGT+CGG | + | chr3.4:6843639-6843658 | MS.gene51712:intron | 45.0% | |
| AGGGGAAGCTTTGCAAGATT+GGG | - | chr3.4:6842084-6842103 | None:intergenic | 45.0% | |
| AGGTTAGGCGGTTTGAACTT+TGG | + | chr3.4:6841623-6841642 | MS.gene51712:CDS | 45.0% | |
| ATAGGATCTGCCTACATGCT+TGG | + | chr3.4:6839612-6839631 | MS.gene51712:intron | 45.0% | |
| ATGAAACACGGATACGCACA+CGG | - | chr3.4:6839039-6839058 | None:intergenic | 45.0% | |
| CATCAAAGAGGGGTAGCAAA+TGG | + | chr3.4:6842486-6842505 | MS.gene51712:CDS | 45.0% | |
| CCCTTCATGACAATGTTGTC+CGG | + | chr3.4:6842100-6842119 | MS.gene51712:CDS | 45.0% | |
| CCGGACAACATTGTCATGAA+GGG | - | chr3.4:6842103-6842122 | None:intergenic | 45.0% | |
| CGGACAACATTGTCATGAAG+GGG | - | chr3.4:6842102-6842121 | None:intergenic | 45.0% | |
| CTTAGCATGCCTTCAATCGA+AGG | + | chr3.4:6843671-6843690 | MS.gene51712:intron | 45.0% | |
| GAAGCTTTGCAAGATTGGGA+TGG | - | chr3.4:6842080-6842099 | None:intergenic | 45.0% | |
| GAAGTCGCACACCATAAAGA+GGG | - | chr3.4:6841167-6841186 | None:intergenic | 45.0% | |
| GAATTGTCCTGGTTGTAAGG+TGG | + | chr3.4:6838739-6838758 | MS.gene51712:intron | 45.0% | |
| GATTTCCTGCATTTGGCTAC+CGG | + | chr3.4:6841085-6841104 | MS.gene51712:CDS | 45.0% | |
| GCACAAAGAAAACCAGATGG+GGG | - | chr3.4:6843803-6843822 | None:intergenic | 45.0% | |
| GTGTCTGTGCTTCATAGGAT+AGG | - | chr3.4:6838916-6838935 | None:intergenic | 45.0% | |
| TATGAAGCACAGACACTCCT+CGG | + | chr3.4:6838920-6838939 | MS.gene51712:intron | 45.0% | |
| TCGACCTCAATATTGCTCGT+TGG | - | chr3.4:6842207-6842226 | None:intergenic | 45.0% | |
| TGTTCTACTGTCTTCAGCAG+TGG | + | chr3.4:6843519-6843538 | MS.gene51712:intron | 45.0% | |
| TTAGTTGAGTCATACCTGGG+AGG | - | chr3.4:6843145-6843164 | None:intergenic | 45.0% | |
| TTGTAAGGTGGATCAAGCCA+AGG | + | chr3.4:6838751-6838770 | MS.gene51712:intron | 45.0% | |
| ! | AGGGGGGTTTTCTTTCAATC+AGG | - | chr3.4:6843872-6843891 | None:intergenic | 45.0% |
| ! | AGGTTTTCGACCATAGCGAT+CGG | - | chr3.4:6839673-6839692 | None:intergenic | 45.0% |
| ! | CTGTCTTCAGCAGTGGTTTT+TGG | + | chr3.4:6843526-6843545 | MS.gene51712:intron | 45.0% |
| !! | ATTTCAGGTTGCAGCTGCTT+GGG | + | chr3.4:6840319-6840338 | MS.gene51712:intron | 45.0% |
| !! | TGGTTTGCTTGGACCAATGA+AGG | + | chr3.4:6840071-6840090 | MS.gene51712:CDS | 45.0% |
| !!! | GGTCCACAGATTTTTTGCAC+TGG | - | chr3.4:6841937-6841956 | None:intergenic | 45.0% |
| AAGGTAATTGGTCCAGCAGG+AGG | + | chr3.4:6842537-6842556 | MS.gene51712:CDS | 50.0% | |
| ATGGATGCTTCTTTCCTCCC+AGG | + | chr3.4:6843128-6843147 | MS.gene51712:CDS | 50.0% | |
| ATTAGCGTCTGAGTCGTGTC+CGG | + | chr3.4:6839010-6839029 | MS.gene51712:intron | 50.0% | |
| CGAAGCTCTACCAAGCATGT+AGG | - | chr3.4:6839625-6839644 | None:intergenic | 50.0% | |
| GAAAGTCCTCGAAGGTTAGG+CGG | + | chr3.4:6841611-6841630 | MS.gene51712:CDS | 50.0% | |
| GCCGGACAACATTGTCATGA+AGG | - | chr3.4:6842104-6842123 | None:intergenic | 50.0% | |
| GCTGAAAGTCCTCGAAGGTT+AGG | + | chr3.4:6841608-6841627 | MS.gene51712:CDS | 50.0% | |
| GCTTGATCCACCTTACAACC+AGG | - | chr3.4:6838749-6838768 | None:intergenic | 50.0% | |
| GGAATGATAGCCGATCGCTA+TGG | + | chr3.4:6839660-6839679 | MS.gene51712:CDS | 50.0% | |
| TCGTTCTTGCTCGCATTGCA+GGG | + | chr3.4:6841959-6841978 | MS.gene51712:CDS | 50.0% | |
| TGCAAGGTAATTGGTCCAGC+AGG | + | chr3.4:6842534-6842553 | MS.gene51712:CDS | 50.0% | |
| TTCAAACCGCCTAACCTTCG+AGG | - | chr3.4:6841620-6841639 | None:intergenic | 50.0% | |
| ! | ACCAGCGTTGGGAGGTTATT+TGG | + | chr3.4:6840361-6840380 | MS.gene51712:CDS | 50.0% |
| ! | ATGTGCCAATATGGTGTCGG+TGG | + | chr3.4:6843642-6843661 | MS.gene51712:intron | 50.0% |
| ! | CCTCGTCTTTTCTCGACCTA+CGG | + | chr3.4:6843285-6843304 | MS.gene51712:intron | 50.0% |
| ! | CGGGTTGACATGACGCTATT+TGG | + | chr3.4:6841791-6841810 | MS.gene51712:intron | 50.0% |
| ! | GGGTCAGTTAGTGTCACTGT+CGG | - | chr3.4:6842859-6842878 | None:intergenic | 50.0% |
| ! | GTGCAGGTGCTATCATTCCT+TGG | - | chr3.4:6841760-6841779 | None:intergenic | 50.0% |
| ! | GTTGGGAGGTTATTTGGCTC+AGG | + | chr3.4:6840367-6840386 | MS.gene51712:CDS | 50.0% |
| ! | TATGGGCTGAAAGTCCTCGA+AGG | + | chr3.4:6841603-6841622 | MS.gene51712:CDS | 50.0% |
| ! | TGGGGAGTAGGTTTGGTCTT+CGG | + | chr3.4:6840338-6840357 | MS.gene51712:CDS | 50.0% |
| !! | AGGCATTGACACATCGACAC+TGG | - | chr3.4:6842913-6842932 | None:intergenic | 50.0% |
| !! | ATATGTGTTGGTGTCGGCAC+CGG | - | chr3.4:6838958-6838977 | None:intergenic | 50.0% |
| !! | GAGGAGTGTCTGTGCTTCAT+AGG | - | chr3.4:6838921-6838940 | None:intergenic | 50.0% |
| !! | GATTTCAGGTTGCAGCTGCT+TGG | + | chr3.4:6840318-6840337 | MS.gene51712:intron | 50.0% |
| !! | TCAGTGAAACTGCTCTGAGG+GGG | - | chr3.4:6843889-6843908 | None:intergenic | 50.0% |
| !! | TTTCAGGTTGCAGCTGCTTG+GGG | + | chr3.4:6840320-6840339 | MS.gene51712:intron | 50.0% |
| ACCTACCGGTAGCCAAATGC+AGG | - | chr3.4:6841093-6841112 | None:intergenic | 55.0% | |
| AGCTGCTTGGGGAGTAGGTT+TGG | + | chr3.4:6840331-6840350 | MS.gene51712:CDS | 55.0% | |
| CCGTAGGTCGAGAAAAGACG+AGG | - | chr3.4:6843288-6843307 | None:intergenic | 55.0% | |
| CGTTCTTGCTCGCATTGCAG+GGG | + | chr3.4:6841960-6841979 | MS.gene51712:CDS | 55.0% | |
| GCAATGCGAGCAAGAACGAC+AGG | - | chr3.4:6841958-6841977 | None:intergenic | 55.0% | |
| GCACAGACACTCCTCGGATT+AGG | + | chr3.4:6838926-6838945 | MS.gene51712:intron | 55.0% | |
| GCCAAATAACCTCCCAACGC+TGG | - | chr3.4:6840365-6840384 | None:intergenic | 55.0% | |
| GTAATTGGTCCAGCAGGAGG+CGG | + | chr3.4:6842540-6842559 | MS.gene51712:CDS | 55.0% | |
| GTCGTTCTTGCTCGCATTGC+AGG | + | chr3.4:6841958-6841977 | MS.gene51712:CDS | 55.0% | |
| TCCTGCATTTGGCTACCGGT+AGG | + | chr3.4:6841089-6841108 | MS.gene51712:intron | 55.0% | |
| ! | TCCTCGGATTAGGCATGTCC+CGG | + | chr3.4:6838936-6838955 | MS.gene51712:intron | 55.0% |
| ! | TTGGTCTTCGGACCAGCGTT+GGG | + | chr3.4:6840350-6840369 | MS.gene51712:CDS | 55.0% |
| ! | TTTGGTCTTCGGACCAGCGT+TGG | + | chr3.4:6840349-6840368 | MS.gene51712:CDS | 55.0% |
| !! | CAGTGAAACTGCTCTGAGGG+GGG | - | chr3.4:6843888-6843907 | None:intergenic | 55.0% |
| !! | TATGTGTTGGTGTCGGCACC+GGG | - | chr3.4:6838957-6838976 | None:intergenic | 55.0% |
| ACCGGGACATGCCTAATCCG+AGG | - | chr3.4:6838940-6838959 | None:intergenic | 60.0% | |
| ACGGATACGCACACGGACAC+CGG | - | chr3.4:6839032-6839051 | None:intergenic | 60.0% | |
| GTCGGCCACCGACACCATAT+TGG | - | chr3.4:6843650-6843669 | None:intergenic | 60.0% | |
| GTTGCAGCTGCTTGGGGAGT+AGG | + | chr3.4:6840326-6840345 | MS.gene51712:CDS | 60.0% | |
| TTCAACTGCAGGCCCCCATC+TGG | + | chr3.4:6843788-6843807 | MS.gene51712:intron | 60.0% | |
| TACATTGCGCCGCCTCCTGC+TGG | - | chr3.4:6842552-6842571 | None:intergenic | 65.0% | |
| ! | GTCTTCGGACCAGCGTTGGG+AGG | + | chr3.4:6840353-6840372 | MS.gene51712:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 6838692 | 6843908 | 6838692 | ID=MS.gene51712 |
| chr3.4 | mRNA | 6838692 | 6843908 | 6838692 | ID=MS.gene51712.t1;Parent=MS.gene51712 |
| chr3.4 | exon | 6838692 | 6838752 | 6838692 | ID=MS.gene51712.t1.exon1;Parent=MS.gene51712.t1 |
| chr3.4 | CDS | 6838692 | 6838752 | 6838692 | ID=cds.MS.gene51712.t1;Parent=MS.gene51712.t1 |
| chr3.4 | exon | 6839127 | 6839167 | 6839127 | ID=MS.gene51712.t1.exon2;Parent=MS.gene51712.t1 |
| chr3.4 | CDS | 6839127 | 6839167 | 6839127 | ID=cds.MS.gene51712.t1;Parent=MS.gene51712.t1 |
| chr3.4 | exon | 6839464 | 6839524 | 6839464 | ID=MS.gene51712.t1.exon3;Parent=MS.gene51712.t1 |
| chr3.4 | CDS | 6839464 | 6839524 | 6839464 | ID=cds.MS.gene51712.t1;Parent=MS.gene51712.t1 |
| chr3.4 | exon | 6839616 | 6839718 | 6839616 | ID=MS.gene51712.t1.exon4;Parent=MS.gene51712.t1 |
| chr3.4 | CDS | 6839616 | 6839718 | 6839616 | ID=cds.MS.gene51712.t1;Parent=MS.gene51712.t1 |
| chr3.4 | exon | 6839990 | 6840092 | 6839990 | ID=MS.gene51712.t1.exon5;Parent=MS.gene51712.t1 |
| chr3.4 | CDS | 6839990 | 6840092 | 6839990 | ID=cds.MS.gene51712.t1;Parent=MS.gene51712.t1 |
| chr3.4 | exon | 6840191 | 6840244 | 6840191 | ID=MS.gene51712.t1.exon6;Parent=MS.gene51712.t1 |
| chr3.4 | CDS | 6840191 | 6840244 | 6840191 | ID=cds.MS.gene51712.t1;Parent=MS.gene51712.t1 |
| chr3.4 | exon | 6840326 | 6840388 | 6840326 | ID=MS.gene51712.t1.exon7;Parent=MS.gene51712.t1 |
| chr3.4 | CDS | 6840326 | 6840388 | 6840326 | ID=cds.MS.gene51712.t1;Parent=MS.gene51712.t1 |
| chr3.4 | exon | 6840877 | 6840926 | 6840877 | ID=MS.gene51712.t1.exon8;Parent=MS.gene51712.t1 |
| chr3.4 | CDS | 6840877 | 6840926 | 6840877 | ID=cds.MS.gene51712.t1;Parent=MS.gene51712.t1 |
| chr3.4 | exon | 6841031 | 6841106 | 6841031 | ID=MS.gene51712.t1.exon9;Parent=MS.gene51712.t1 |
| chr3.4 | CDS | 6841031 | 6841106 | 6841031 | ID=cds.MS.gene51712.t1;Parent=MS.gene51712.t1 |
| chr3.4 | exon | 6841300 | 6841479 | 6841300 | ID=MS.gene51712.t1.exon10;Parent=MS.gene51712.t1 |
| chr3.4 | CDS | 6841300 | 6841479 | 6841300 | ID=cds.MS.gene51712.t1;Parent=MS.gene51712.t1 |
| chr3.4 | exon | 6841593 | 6841680 | 6841593 | ID=MS.gene51712.t1.exon11;Parent=MS.gene51712.t1 |
| chr3.4 | CDS | 6841593 | 6841680 | 6841593 | ID=cds.MS.gene51712.t1;Parent=MS.gene51712.t1 |
| chr3.4 | exon | 6841896 | 6841981 | 6841896 | ID=MS.gene51712.t1.exon12;Parent=MS.gene51712.t1 |
| chr3.4 | CDS | 6841896 | 6841981 | 6841896 | ID=cds.MS.gene51712.t1;Parent=MS.gene51712.t1 |
| chr3.4 | exon | 6842070 | 6842177 | 6842070 | ID=MS.gene51712.t1.exon13;Parent=MS.gene51712.t1 |
| chr3.4 | CDS | 6842070 | 6842177 | 6842070 | ID=cds.MS.gene51712.t1;Parent=MS.gene51712.t1 |
| chr3.4 | exon | 6842333 | 6842377 | 6842333 | ID=MS.gene51712.t1.exon14;Parent=MS.gene51712.t1 |
| chr3.4 | CDS | 6842333 | 6842377 | 6842333 | ID=cds.MS.gene51712.t1;Parent=MS.gene51712.t1 |
| chr3.4 | exon | 6842480 | 6842568 | 6842480 | ID=MS.gene51712.t1.exon15;Parent=MS.gene51712.t1 |
| chr3.4 | CDS | 6842480 | 6842568 | 6842480 | ID=cds.MS.gene51712.t1;Parent=MS.gene51712.t1 |
| chr3.4 | exon | 6843106 | 6843149 | 6843106 | ID=MS.gene51712.t1.exon16;Parent=MS.gene51712.t1 |
| chr3.4 | CDS | 6843106 | 6843149 | 6843106 | ID=cds.MS.gene51712.t1;Parent=MS.gene51712.t1 |
| chr3.4 | exon | 6843799 | 6843908 | 6843799 | ID=MS.gene51712.t1.exon17;Parent=MS.gene51712.t1 |
| chr3.4 | CDS | 6843799 | 6843908 | 6843799 | ID=cds.MS.gene51712.t1;Parent=MS.gene51712.t1 |
| Gene Sequence |
| Protein sequence |
