Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56348.t1 | XP_003598370.1 | 92.4 | 446 | 6 | 1 | 1 | 418 | 1 | 446 | 5.00E-231 | 810.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56348.t1 | Q8RWN2 | 51.3 | 456 | 182 | 4 | 2 | 418 | 3 | 457 | 1.7e-134 | 480.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56348.t1 | G7IVI3 | 92.4 | 446 | 6 | 1 | 1 | 418 | 1 | 446 | 3.6e-231 | 810.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene56348 | MS.gene045176 | PPI |
| MS.gene56348 | MS.gene063906 | PPI |
| MS.gene56348 | MS.gene045173 | PPI |
| MS.gene064455 | MS.gene56348 | PPI |
| MS.gene56348 | MS.gene59760 | PPI |
| MS.gene56348 | MS.gene56347 | PPI |
| MS.gene56348 | MS.gene009215 | PPI |
| MS.gene56348 | MS.gene51711 | PPI |
| MS.gene56348 | MS.gene59759 | PPI |
| MS.gene56348 | MS.gene79081 | PPI |
| MS.gene56348 | MS.gene064910 | PPI |
| MS.gene56348 | MS.gene51992 | PPI |
| MS.gene063903 | MS.gene56348 | PPI |
| MS.gene016424 | MS.gene56348 | PPI |
| MS.gene56348 | MS.gene51995 | PPI |
| MS.gene56348 | MS.gene016425 | PPI |
| MS.gene56348 | MS.gene75531 | PPI |
| MS.gene56348 | MS.gene78669 | PPI |
| MS.gene56348 | MS.gene038683 | PPI |
| MS.gene56348 | MS.gene75533 | PPI |
| MS.gene51712 | MS.gene56348 | PPI |
| MS.gene59757 | MS.gene56348 | PPI |
| MS.gene56348 | MS.gene063905 | PPI |
| MS.gene56348 | MS.gene063904 | PPI |
| MS.gene067076 | MS.gene56348 | PPI |
| MS.gene56348 | MS.gene016422 | PPI |
| MS.gene56348 | MS.gene78668 | PPI |
| MS.gene78670 | MS.gene56348 | PPI |
| MS.gene016423 | MS.gene56348 | PPI |
| MS.gene56348 | MS.gene59758 | PPI |
| MS.gene56348 | MS.gene78667 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56348.t1 | MTR_3g010850 | 92.377 | 446 | 6 | 1 | 1 | 418 | 1 | 446 | 0.0 | 833 |
| MS.gene56348.t1 | MTR_3g010850 | 98.241 | 398 | 7 | 0 | 21 | 418 | 37 | 434 | 0.0 | 801 |
| MS.gene56348.t1 | MTR_3g010820 | 67.035 | 452 | 114 | 5 | 1 | 418 | 1 | 451 | 0.0 | 611 |
| MS.gene56348.t1 | MTR_8g062990 | 66.295 | 448 | 118 | 4 | 3 | 418 | 5 | 451 | 0.0 | 610 |
| MS.gene56348.t1 | MTR_8g042780 | 63.535 | 447 | 129 | 3 | 6 | 421 | 4 | 447 | 0.0 | 603 |
| MS.gene56348.t1 | MTR_8g042770 | 61.161 | 448 | 143 | 2 | 2 | 418 | 4 | 451 | 0.0 | 595 |
| MS.gene56348.t1 | MTR_3g086440 | 66.071 | 448 | 120 | 3 | 2 | 418 | 4 | 450 | 0.0 | 590 |
| MS.gene56348.t1 | MTR_8g042870 | 62.749 | 451 | 134 | 3 | 2 | 421 | 4 | 451 | 0.0 | 578 |
| MS.gene56348.t1 | MTR_8g042780 | 62.791 | 430 | 126 | 3 | 6 | 404 | 4 | 430 | 0.0 | 572 |
| MS.gene56348.t1 | MTR_8g042820 | 63.604 | 283 | 97 | 2 | 124 | 403 | 34 | 313 | 4.30e-134 | 387 |
| MS.gene56348.t1 | MTR_1194s0010 | 57.534 | 146 | 34 | 1 | 6 | 123 | 4 | 149 | 6.93e-53 | 174 |
| MS.gene56348.t1 | MTR_1157s0010 | 61.417 | 127 | 49 | 0 | 295 | 421 | 1 | 127 | 1.08e-49 | 166 |
| MS.gene56348.t1 | MTR_3g010900 | 52.688 | 93 | 20 | 2 | 335 | 403 | 1 | 93 | 9.95e-19 | 81.3 |
| MS.gene56348.t1 | MTR_8g075280 | 33.714 | 175 | 82 | 7 | 27 | 200 | 121 | 262 | 1.94e-12 | 67.8 |
| MS.gene56348.t1 | MTR_8g075280 | 52.500 | 80 | 21 | 3 | 27 | 105 | 121 | 184 | 5.32e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56348.t1 | AT5G13750 | 52.550 | 451 | 182 | 4 | 2 | 421 | 3 | 452 | 3.63e-175 | 498 |
| MS.gene56348.t1 | AT5G13740 | 51.316 | 456 | 182 | 4 | 2 | 418 | 3 | 457 | 8.04e-170 | 485 |
| MS.gene56348.t1 | AT5G13740 | 51.708 | 439 | 172 | 4 | 2 | 401 | 3 | 440 | 6.95e-162 | 463 |
| MS.gene56348.t1 | AT3G43790 | 54.703 | 404 | 176 | 3 | 21 | 418 | 48 | 450 | 7.51e-161 | 462 |
| MS.gene56348.t1 | AT3G43790 | 54.703 | 404 | 176 | 3 | 21 | 418 | 48 | 450 | 7.51e-161 | 462 |
| MS.gene56348.t1 | AT3G43790 | 54.703 | 404 | 176 | 3 | 21 | 418 | 48 | 450 | 2.02e-160 | 461 |
| MS.gene56348.t1 | AT3G43790 | 54.703 | 404 | 176 | 3 | 21 | 418 | 48 | 450 | 2.02e-160 | 461 |
| MS.gene56348.t1 | AT5G13750 | 51.716 | 408 | 165 | 4 | 2 | 378 | 3 | 409 | 1.01e-154 | 444 |
| MS.gene56348.t1 | AT5G13750 | 51.716 | 408 | 165 | 4 | 2 | 378 | 3 | 409 | 1.01e-154 | 444 |
| MS.gene56348.t1 | AT5G13750 | 55.191 | 366 | 161 | 2 | 59 | 421 | 1 | 366 | 1.83e-152 | 437 |
| MS.gene56348.t1 | AT3G43790 | 53.760 | 359 | 159 | 3 | 21 | 373 | 48 | 405 | 2.19e-137 | 399 |
| MS.gene56348.t1 | AT5G13940 | 44.186 | 86 | 32 | 1 | 239 | 324 | 8 | 77 | 7.21e-16 | 80.1 |
| MS.gene56348.t1 | AT5G13940 | 44.186 | 86 | 32 | 1 | 239 | 324 | 159 | 228 | 7.95e-16 | 80.1 |
Find 89 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCCTTTGGAAATATATT+TGG | 0.129831 | 3.1:-6745182 | None:intergenic |
| TACATAATCATGGAAGATTT+TGG | 0.184692 | 3.1:+6742044 | None:intergenic |
| TGGGGAGTAGGTTTGGTCTT+TGG | 0.222523 | 3.1:+6744750 | MS.gene56348:CDS |
| GAGCTTCGACATCTATATTA+TGG | 0.224672 | 3.1:+6743781 | MS.gene56348:CDS |
| AAAATTGAAGCTTTAGAAAA+TGG | 0.231093 | 3.1:+6745620 | MS.gene56348:CDS |
| AACAATGATAGATGACATTA+AGG | 0.236048 | 3.1:-6745705 | None:intergenic |
| ACCAGCATTGGGAGGTTATT+TGG | 0.243491 | 3.1:+6744773 | MS.gene56348:CDS |
| CGAAAACCTGTTGTGATAAT+AGG | 0.246718 | 3.1:+6743828 | MS.gene56348:CDS |
| AATTAAAAGATTCTTTAAAA+TGG | 0.254196 | 3.1:-6746441 | None:intergenic |
| ATTTCAGGTTGCAGCTGCTT+GGG | 0.282569 | 3.1:+6744731 | MS.gene56348:intron |
| AGAGAAGAATACCATGCTTT+AGG | 0.288390 | 3.1:+6744447 | MS.gene56348:CDS |
| GGTAATATTCTTGCAGTATC+AGG | 0.312627 | 3.1:+6745945 | MS.gene56348:CDS |
| ATTTCCATACCTCTATTTCA+TGG | 0.316231 | 3.1:+6742478 | MS.gene56348:CDS |
| AGCTGCTTGGGGAGTAGGTT+TGG | 0.331753 | 3.1:+6744743 | MS.gene56348:CDS |
| TTCGTTCTTGGAGGTTTAAA+TGG | 0.333038 | 3.1:+6744286 | MS.gene56348:CDS |
| TATTTCCAAAGGATTCCTTT+TGG | 0.334733 | 3.1:+6745189 | MS.gene56348:CDS |
| ATGAAGCACGGCAAGAAGTA+TGG | 0.338985 | 3.1:-6745326 | None:intergenic |
| CCCTTCATGACAATGTTGTC+AGG | 0.339530 | 3.1:+6746386 | MS.gene56348:CDS |
| ATGTCAGCATGCAAGGTAAT+TGG | 0.364337 | 3.1:+6746796 | MS.gene56348:CDS |
| TTATCCCAAAAGGAATCCTT+TGG | 0.364927 | 3.1:-6745194 | None:intergenic |
| TAGTAGCAATTTCCTGCATT+TGG | 0.367001 | 3.1:+6745369 | MS.gene56348:CDS |
| ATCGTTCTTGCTCGCATCGC+AGG | 0.378324 | 3.1:+6746244 | MS.gene56348:CDS |
| TTGGTCTTTGGACCAGCATT+GGG | 0.380382 | 3.1:+6744762 | MS.gene56348:CDS |
| GATTTCAGGTTGCAGCTGCT+TGG | 0.382034 | 3.1:+6744730 | MS.gene56348:intron |
| CACATTGCGCCGCCTCCAGC+TGG | 0.389601 | 3.1:-6746820 | None:intergenic |
| GTTGCAGCTGCTTGGGGAGT+AGG | 0.394368 | 3.1:+6744738 | MS.gene56348:CDS |
| AAGGGGAAGCTTTGCAAGAT+AGG | 0.395175 | 3.1:-6746368 | None:intergenic |
| AGCTTCGACATCTATATTAT+GGG | 0.397954 | 3.1:+6743782 | MS.gene56348:CDS |
| ATATTTGGATATTTCTGTAC+TGG | 0.401992 | 3.1:-6745167 | None:intergenic |
| GGAGGTTTAAATGGTTTGCT+TGG | 0.407712 | 3.1:+6744295 | MS.gene56348:CDS |
| TTTGGTCTTTGGACCAGCAT+TGG | 0.414787 | 3.1:+6744761 | MS.gene56348:CDS |
| ATAATTCCTATTATCACAAC+AGG | 0.416010 | 3.1:-6743834 | None:intergenic |
| GTTACGATGAGATTCGTTCT+TGG | 0.428895 | 3.1:+6744274 | MS.gene56348:CDS |
| AGGTTAGGCGGTTTGAACTT+TGG | 0.449468 | 3.1:+6745909 | MS.gene56348:CDS |
| TCGTTCTTGCTCGCATCGCA+GGG | 0.456280 | 3.1:+6746245 | MS.gene56348:CDS |
| GCCAAATAACCTCCCAATGC+TGG | 0.468669 | 3.1:-6744774 | None:intergenic |
| ATTGGGAGGTTATTTGGCTC+AGG | 0.470799 | 3.1:+6744779 | MS.gene56348:CDS |
| TTGTTAACTGCAGCTTAACT+TGG | 0.472009 | 3.1:+6747346 | MS.gene56348:intron |
| GCTGAAAGTCCTCGAAGGTT+AGG | 0.476875 | 3.1:+6745894 | MS.gene56348:CDS |
| CTGATTGATATAAGCCAAGC+TGG | 0.477613 | 3.1:-6746201 | None:intergenic |
| TGGTTTGCTTGGACCAATGA+AGG | 0.480844 | 3.1:+6744306 | MS.gene56348:CDS |
| TTCAAACCGCCTAACCTTCG+AGG | 0.482253 | 3.1:-6745903 | None:intergenic |
| TGCAAGGTAATTGGTCCAGC+TGG | 0.484350 | 3.1:+6746805 | MS.gene56348:CDS |
| GGTATTATAATGTTCCAGCT+TGG | 0.489803 | 3.1:+6746187 | MS.gene56348:CDS |
| AGTTCCTATGCTGGTTATGT+AGG | 0.490127 | 3.1:+6743648 | MS.gene56348:CDS |
| CATCAAAGAGGGGTAGCAAA+TGG | 0.491220 | 3.1:+6746757 | MS.gene56348:CDS |
| GGAATGATAGCCGATCGATA+TGG | 0.497082 | 3.1:+6743804 | MS.gene56348:CDS |
| GCCTGACAACATTGTCATGA+AGG | 0.501401 | 3.1:-6746387 | None:intergenic |
| TATTATCATGAGAATTGTCC+TGG | 0.510827 | 3.1:+6742089 | MS.gene56348:CDS |
| ACGATGAGATTCGTTCTTGG+AGG | 0.516830 | 3.1:+6744277 | MS.gene56348:CDS |
| AACAGGATCAACATCAAAGA+GGG | 0.518590 | 3.1:+6746746 | MS.gene56348:intron |
| ATCCACTTACTTATCCCAAA+AGG | 0.518714 | 3.1:-6745204 | None:intergenic |
| ACAATGATAGATGACATTAA+GGG | 0.519109 | 3.1:-6745704 | None:intergenic |
| ATAGGATCTGCCTACATGCT+TGG | 0.519702 | 3.1:+6743756 | MS.gene56348:intron |
| TTTCAGGTTGCAGCTGCTTG+GGG | 0.522103 | 3.1:+6744732 | MS.gene56348:intron |
| GAAGATATCAGTTCCTATGC+TGG | 0.522329 | 3.1:+6743639 | MS.gene56348:CDS |
| TATGGAAATAGAGATGCTAT+AGG | 0.523760 | 3.1:-6742464 | None:intergenic |
| AACTGCTATGTCAGCATGCA+AGG | 0.527847 | 3.1:+6746789 | MS.gene56348:CDS |
| GTGCTTCATTGTCTCAGCTA+TGG | 0.532311 | 3.1:+6745340 | MS.gene56348:CDS |
| TATCACTCACCATGAAATAG+AGG | 0.534625 | 3.1:-6742487 | None:intergenic |
| ATTTAGGAGATAATTTCTAC+TGG | 0.534952 | 3.1:+6746613 | MS.gene56348:intron |
| AACTTTGGAACTAATGATGT+CGG | 0.538262 | 3.1:+6745924 | MS.gene56348:CDS |
| GTCTTTGGACCAGCATTGGG+AGG | 0.544921 | 3.1:+6744765 | MS.gene56348:CDS |
| ACATACTGGTAGCCAAATGC+AGG | 0.547142 | 3.1:-6745381 | None:intergenic |
| CTCACCATGAAATAGAGGTA+TGG | 0.553655 | 3.1:-6742482 | None:intergenic |
| GCTTAACTTGGTCACAAAAG+AGG | 0.553665 | 3.1:+6747358 | MS.gene56348:intron |
| ATGGATGCTTCTTACCTCCC+AGG | 0.560148 | 3.1:+6747381 | MS.gene56348:CDS |
| CCTGACAACATTGTCATGAA+GGG | 0.568076 | 3.1:-6746386 | None:intergenic |
| GTAATTGGTCCAGCTGGAGG+CGG | 0.574346 | 3.1:+6746811 | MS.gene56348:CDS |
| CAGTTGATTGTCCTAAAGCA+TGG | 0.574814 | 3.1:-6744458 | None:intergenic |
| CGAAGCTCTACCAAGCATGT+AGG | 0.590397 | 3.1:-6743766 | None:intergenic |
| ATATCCAAATATATTTCCAA+AGG | 0.595947 | 3.1:+6745178 | MS.gene56348:CDS |
| CTTACCTACATAACCAGCAT+AGG | 0.599814 | 3.1:-6743652 | None:intergenic |
| AACTTGGTCACAAAAGAGGA+TGG | 0.617641 | 3.1:+6747362 | MS.gene56348:CDS |
| GCGATGCGAGCAAGAACGAT+AGG | 0.621644 | 3.1:-6746241 | None:intergenic |
| CGTTCTTGCTCGCATCGCAG+GGG | 0.626575 | 3.1:+6746246 | MS.gene56348:CDS |
| GCTTCGACATCTATATTATG+GGG | 0.629817 | 3.1:+6743783 | MS.gene56348:CDS |
| ATTAGTTGAGAGTTATACCT+GGG | 0.632033 | 3.1:-6747398 | None:intergenic |
| AAACAGGATCAACATCAAAG+AGG | 0.635198 | 3.1:+6746745 | MS.gene56348:intron |
| GAAAGTCCTCGAAGGTTAGG+CGG | 0.636675 | 3.1:+6745897 | MS.gene56348:CDS |
| CTGACAACATTGTCATGAAG+GGG | 0.644243 | 3.1:-6746385 | None:intergenic |
| AAGGTAATTGGTCCAGCTGG+AGG | 0.645237 | 3.1:+6746808 | MS.gene56348:CDS |
| TTTAGAAAATGGAACCAATG+AGG | 0.646034 | 3.1:+6745631 | MS.gene56348:CDS |
| CATTCTGCAAAATAAAGCAG+TGG | 0.656635 | 3.1:+6746642 | MS.gene56348:CDS |
| AATTAGTTGAGAGTTATACC+TGG | 0.657595 | 3.1:-6747399 | None:intergenic |
| TATGGGCTGAAAGTCCTCGA+AGG | 0.690573 | 3.1:+6745889 | MS.gene56348:CDS |
| AGTTGAGAGTTATACCTGGG+AGG | 0.691821 | 3.1:-6747395 | None:intergenic |
| ACAGGATCAACATCAAAGAG+GGG | 0.699202 | 3.1:+6746747 | MS.gene56348:intron |
| ATAGCTGAGACAATGAAGCA+CGG | 0.701964 | 3.1:-6745338 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATGAAATATTTGAAT+GGG | - | chr3.1:6747153-6747172 | None:intergenic | 10.0% |
| !! | TTATTTATAATTCAAATAGA+AGG | - | chr3.1:6746867-6746886 | None:intergenic | 10.0% |
| !!! | AATTAAAAGATTCTTTAAAA+TGG | - | chr3.1:6746444-6746463 | None:intergenic | 10.0% |
| !!! | TAATAAATATTCACAAATTT+TGG | + | chr3.1:6742631-6742650 | MS.gene56348:intron | 10.0% |
| !! | AAAACACTATATTAAATGTT+TGG | + | chr3.1:6744337-6744356 | MS.gene56348:intron | 15.0% |
| !! | AATAGATAATTACATACTTA+AGG | + | chr3.1:6743458-6743477 | MS.gene56348:intron | 15.0% |
| !! | ATAGATAATTACATACTTAA+GGG | + | chr3.1:6743459-6743478 | MS.gene56348:intron | 15.0% |
| !! | CAAAATATGAAATATTTGAA+TGG | - | chr3.1:6747154-6747173 | None:intergenic | 15.0% |
| !! | CATATGACTTATTATATATT+TGG | + | chr3.1:6746721-6746740 | MS.gene56348:intron | 15.0% |
| !! | TCTAGATATTTATTAAGATT+AGG | + | chr3.1:6745991-6746010 | MS.gene56348:intron | 15.0% |
| !! | TTATTATATATTTGGAAAAC+AGG | + | chr3.1:6746729-6746748 | MS.gene56348:intron | 15.0% |
| !! | TTCAAAAAAATGATAAACAA+AGG | - | chr3.1:6744497-6744516 | None:intergenic | 15.0% |
| !! | TTTGATTGTAAAAATGTTAT+AGG | + | chr3.1:6743738-6743757 | MS.gene56348:intron | 15.0% |
| !!! | AAGTACTTTTAATGTTTATT+TGG | + | chr3.1:6743942-6743961 | MS.gene56348:intron | 15.0% |
| !!! | AGTACTTTTAATGTTTATTT+GGG | + | chr3.1:6743943-6743962 | MS.gene56348:intron | 15.0% |
| !!! | TATGTTAATTTTTCAGATTT+TGG | + | chr3.1:6742750-6742769 | MS.gene56348:intron | 15.0% |
| !!! | TTAGAAATGTTTTCAATATA+TGG | + | chr3.1:6742156-6742175 | MS.gene56348:intron | 15.0% |
| !!! | TTGAAATTTGTAATTTTCAT+TGG | - | chr3.1:6743287-6743306 | None:intergenic | 15.0% |
| !! | AATTTGAATCATTACAACAA+TGG | - | chr3.1:6744703-6744722 | None:intergenic | 20.0% |
| !! | ACGAATTAGTAGTATTAATA+AGG | - | chr3.1:6745022-6745041 | None:intergenic | 20.0% |
| !! | ATAAAAAGGATACTGAAATA+TGG | - | chr3.1:6745509-6745528 | None:intergenic | 20.0% |
| !! | ATATCCAAATATATTTCCAA+AGG | + | chr3.1:6745178-6745197 | MS.gene56348:CDS | 20.0% |
| !! | ATTAATACTCTATTCCAAAT+TGG | + | chr3.1:6745076-6745095 | MS.gene56348:intron | 20.0% |
| !! | GAAAATAGAGCTTATATTTA+GGG | - | chr3.1:6744989-6745008 | None:intergenic | 20.0% |
| !! | GTGAATATTTATTACAAAGA+TGG | - | chr3.1:6742625-6742644 | None:intergenic | 20.0% |
| !! | TATAACATTGTAGTGTAAAA+AGG | - | chr3.1:6747293-6747312 | None:intergenic | 20.0% |
| !! | TATATCCTCAATATATAATC+AGG | + | chr3.1:6743587-6743606 | MS.gene56348:intron | 20.0% |
| !! | TCAAATTATAATCTGATTTC+AGG | + | chr3.1:6744716-6744735 | MS.gene56348:intron | 20.0% |
| !! | TGAAAATAGAGCTTATATTT+AGG | - | chr3.1:6744990-6745009 | None:intergenic | 20.0% |
| !! | TGTCTTTATCATATATTTGT+AGG | + | chr3.1:6746334-6746353 | MS.gene56348:intron | 20.0% |
| !! | TTAATACTCTATTCCAAATT+GGG | + | chr3.1:6745077-6745096 | MS.gene56348:intron | 20.0% |
| !! | TTGTGAATTATATTGTATTC+AGG | - | chr3.1:6743435-6743454 | None:intergenic | 20.0% |
| !!! | AAAATTGAAGCTTTAGAAAA+TGG | + | chr3.1:6745620-6745639 | MS.gene56348:CDS | 20.0% |
| !!! | AACATCTTTTTTTAATTCCT+TGG | - | chr3.1:6742132-6742151 | None:intergenic | 20.0% |
| !!! | ATCTGATTATTTGTTACAAA+AGG | - | chr3.1:6746282-6746301 | None:intergenic | 20.0% |
| !!! | ATGTCTTGTTATAATATCAA+TGG | + | chr3.1:6744182-6744201 | MS.gene56348:intron | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAA+AGG | + | chr3.1:6744153-6744172 | MS.gene56348:intron | 20.0% |
| !!! | CTCATTTTTGTTTTTTAGAT+AGG | + | chr3.1:6742712-6742731 | MS.gene56348:intron | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+TGG | - | chr3.1:6742355-6742336 | None:intergenic | 20.0% |
| !!! | TTAAGTTGTTTATCCAAAAA+GGG | + | chr3.1:6744154-6744173 | MS.gene56348:intron | 20.0% |
| !!! | TTTAGTAAGAAAGTATTCAA+TGG | + | chr3.1:6747017-6747036 | MS.gene56348:intron | 20.0% |
| !!! | TTTGAAGATTTTCTCATTAT+GGG | + | chr3.1:6745872-6745891 | MS.gene56348:intron | 20.0% |
| !!! | TTTGGAATAGAGTATTAATA+AGG | - | chr3.1:6745075-6745094 | None:intergenic | 20.0% |
| !!! | TTTTGAAGATTTTCTCATTA+TGG | + | chr3.1:6745871-6745890 | MS.gene56348:intron | 20.0% |
| ! | AAACAATTCAGAAAAAGACA+TGG | + | chr3.1:6744841-6744860 | MS.gene56348:intron | 25.0% |
| ! | AAACAGAAACATCTTTAAGT+AGG | - | chr3.1:6745781-6745800 | None:intergenic | 25.0% |
| ! | AAATATGCAATGACAAGAAA+TGG | - | chr3.1:6746999-6747018 | None:intergenic | 25.0% |
| ! | AACAATGATAGATGACATTA+AGG | - | chr3.1:6745708-6745727 | None:intergenic | 25.0% |
| ! | AAGAATAAGCCTATTAATGA+AGG | - | chr3.1:6744416-6744435 | None:intergenic | 25.0% |
| ! | ACAATGATAGATGACATTAA+GGG | - | chr3.1:6745707-6745726 | None:intergenic | 25.0% |
| ! | ACTAATGAACAGATAAATGT+TGG | - | chr3.1:6745417-6745436 | None:intergenic | 25.0% |
| ! | ATAATTCCTATTATCACAAC+AGG | - | chr3.1:6743837-6743856 | None:intergenic | 25.0% |
| ! | ATTTAGGAGATAATTTCTAC+TGG | + | chr3.1:6746613-6746632 | MS.gene56348:intron | 25.0% |
| ! | CAAAATTGTCTTCAATATCA+AGG | + | chr3.1:6743127-6743146 | MS.gene56348:intron | 25.0% |
| ! | CAATCAGTTCAAAAAATTTG+TGG | + | chr3.1:6746217-6746236 | MS.gene56348:CDS | 25.0% |
| ! | CTCAATATATAATCAGGTAA+AGG | + | chr3.1:6743593-6743612 | MS.gene56348:intron | 25.0% |
| ! | CTTGATCAATGAATCAAAAA+TGG | + | chr3.1:6746107-6746126 | MS.gene56348:intron | 25.0% |
| ! | CTTTACCTGATTATATATTG+AGG | - | chr3.1:6743595-6743614 | None:intergenic | 25.0% |
| ! | TTCATGTCTATGATATAACA+TGG | + | chr3.1:6742669-6742688 | MS.gene56348:intron | 25.0% |
| !! | AAAATAAGTTGAAAACAGCT+TGG | - | chr3.1:6744000-6744019 | None:intergenic | 25.0% |
| !! | ACTAACTGTTTTCTTTTTGA+TGG | + | chr3.1:6746590-6746609 | MS.gene56348:intron | 25.0% |
| !! | ATATTTGGATATTTCTGTAC+TGG | - | chr3.1:6745170-6745189 | None:intergenic | 25.0% |
| !! | ATGAAAGCCTTCTAAAAAAT+TGG | + | chr3.1:6745681-6745700 | MS.gene56348:CDS | 25.0% |
| !! | ATTTCAGTATCCTTTTTATG+TGG | + | chr3.1:6745510-6745529 | MS.gene56348:intron | 25.0% |
| !! | GAATCCTTTGGAAATATATT+TGG | - | chr3.1:6745185-6745204 | None:intergenic | 25.0% |
| !! | GATTTTGTGTATTTCATAAC+AGG | - | chr3.1:6743527-6743546 | None:intergenic | 25.0% |
| !! | GCTTCTAAATAAAGTTTTTG+AGG | + | chr3.1:6743053-6743072 | MS.gene56348:intron | 25.0% |
| !! | GTAATTTTCAACACACTATT+TGG | + | chr3.1:6744226-6744245 | MS.gene56348:CDS | 25.0% |
| !! | GTTAATTTGAGCTTATTTAC+TGG | + | chr3.1:6743916-6743935 | MS.gene56348:intron | 25.0% |
| !! | TATCCTTTTTATGTGGTTTT+CGG | + | chr3.1:6745517-6745536 | MS.gene56348:intron | 25.0% |
| !! | TCCAAACAGAACTTTTTAAA+GGG | - | chr3.1:6746689-6746708 | None:intergenic | 25.0% |
| !! | TTCATTTTCTTTTCCCAATT+TGG | - | chr3.1:6745093-6745112 | None:intergenic | 25.0% |
| !! | TTCCAAACAGAACTTTTTAA+AGG | - | chr3.1:6746690-6746709 | None:intergenic | 25.0% |
| !!! | AAGACAATTTTGACTAAATG+CGG | - | chr3.1:6743119-6743138 | None:intergenic | 25.0% |
| !!! | GTTTTCTTTTTGATGGATTT+AGG | + | chr3.1:6746597-6746616 | MS.gene56348:intron | 25.0% |
| !!! | TTCTAAAGCTTCAATTTTGT+TGG | - | chr3.1:6745618-6745637 | None:intergenic | 25.0% |
| !!! | TTTAGATCATTAGTACTGAT+AGG | - | chr3.1:6745549-6745568 | None:intergenic | 25.0% |
| AAACCGAAAACCACATAAAA+AGG | - | chr3.1:6745523-6745542 | None:intergenic | 30.0% | |
| AATAAGCCTATTAATGAAGG+AGG | - | chr3.1:6744413-6744432 | None:intergenic | 30.0% | |
| ACACCTGAACAAGTTTAATA+TGG | - | chr3.1:6746166-6746185 | None:intergenic | 30.0% | |
| ACATAGAGATTAGGTCATAA+AGG | - | chr3.1:6747057-6747076 | None:intergenic | 30.0% | |
| AGAACTCACACAATATAAAG+AGG | - | chr3.1:6745455-6745474 | None:intergenic | 30.0% | |
| AGCTTCGACATCTATATTAT+GGG | + | chr3.1:6743782-6743801 | MS.gene56348:CDS | 30.0% | |
| ATAGAAGGTAACGAAATCAA+AGG | - | chr3.1:6746852-6746871 | None:intergenic | 30.0% | |
| ATAGAGATTAGGTCATAAAG+GGG | - | chr3.1:6747055-6747074 | None:intergenic | 30.0% | |
| ATGTGAGATAAAGACATAAC+AGG | - | chr3.1:6742523-6742542 | None:intergenic | 30.0% | |
| ATTTCCATACCTCTATTTCA+TGG | + | chr3.1:6742478-6742497 | MS.gene56348:CDS | 30.0% | |
| CAAAGTGAGTAATTAGTGAT+AGG | - | chr3.1:6742407-6742426 | None:intergenic | 30.0% | |
| CAGGTTAATATAGAGGTAAA+GGG | - | chr3.1:6743234-6743253 | None:intergenic | 30.0% | |
| CATAGAGATTAGGTCATAAA+GGG | - | chr3.1:6747056-6747075 | None:intergenic | 30.0% | |
| GAACTCACACAATATAAAGA+GGG | - | chr3.1:6745454-6745473 | None:intergenic | 30.0% | |
| GTATTCAGGAATAACATTGA+AGG | - | chr3.1:6743421-6743440 | None:intergenic | 30.0% | |
| GTTAGTGTTACATAGAGATT+AGG | - | chr3.1:6747066-6747085 | None:intergenic | 30.0% | |
| TAGAAGGTAACGAAATCAAA+GGG | - | chr3.1:6746851-6746870 | None:intergenic | 30.0% | |
| TAGTTACTTCTGTTTGAACT+CGG | - | chr3.1:6746974-6746993 | None:intergenic | 30.0% | |
| TATGGAAATAGAGATGCTAT+AGG | - | chr3.1:6742467-6742486 | None:intergenic | 30.0% | |
| TATTATCATGAGAATTGTCC+TGG | + | chr3.1:6742089-6742108 | MS.gene56348:CDS | 30.0% | |
| TCATAACCTCCTTCATTAAT+AGG | + | chr3.1:6744404-6744423 | MS.gene56348:intron | 30.0% | |
| TCATGAAAAATTGACATGAG+AGG | + | chr3.1:6742852-6742871 | MS.gene56348:intron | 30.0% | |
| TCTCAAATTATTAGTGGTGT+CGG | - | chr3.1:6744583-6744602 | None:intergenic | 30.0% | |
| TGTGTATACTTGAATATCTC+AGG | + | chr3.1:6744361-6744380 | MS.gene56348:intron | 30.0% | |
| TTCAGTGTAATTGTATGTGT+CGG | - | chr3.1:6742311-6742330 | None:intergenic | 30.0% | |
| TTTAGAAAATGGAACCAATG+AGG | + | chr3.1:6745631-6745650 | MS.gene56348:CDS | 30.0% | |
| ! | ACTTGCACGTAAACTTTTAT+GGG | + | chr3.1:6746058-6746077 | MS.gene56348:intron | 30.0% |
| ! | ATTCGTTTTCGAAGATGAAA+AGG | + | chr3.1:6745036-6745055 | MS.gene56348:intron | 30.0% |
| ! | ATTTCCAAAGGATTCCTTTT+GGG | + | chr3.1:6745190-6745209 | MS.gene56348:CDS | 30.0% |
| ! | GAACCATATTAAACTTGTTC+AGG | + | chr3.1:6746160-6746179 | MS.gene56348:intron | 30.0% |
| ! | TATTAAACTTGTTCAGGTGT+TGG | + | chr3.1:6746166-6746185 | MS.gene56348:intron | 30.0% |
| ! | TATTTCCAAAGGATTCCTTT+TGG | + | chr3.1:6745189-6745208 | MS.gene56348:CDS | 30.0% |
| ! | TTAGAAGGCTTTCATCTTTT+TGG | - | chr3.1:6745676-6745695 | None:intergenic | 30.0% |
| !! | AAAAGACATGGATTTTAACC+TGG | + | chr3.1:6744853-6744872 | MS.gene56348:intron | 30.0% |
| !! | AACTTTGGAACTAATGATGT+CGG | + | chr3.1:6745924-6745943 | MS.gene56348:CDS | 30.0% |
| !! | ATTTTTCAGATTTTGGACTG+TGG | + | chr3.1:6742757-6742776 | MS.gene56348:intron | 30.0% |
| !! | CCAAACAGAACTTTTTAAAG+GGG | - | chr3.1:6746688-6746707 | None:intergenic | 30.0% |
| !! | CTGAATTGTTTTATACCAGA+AGG | - | chr3.1:6744832-6744851 | None:intergenic | 30.0% |
| !! | CTTATTTTTCTCATCCTCAT+TGG | - | chr3.1:6745648-6745667 | None:intergenic | 30.0% |
| !! | GTTTTGAATGATACCTTCAT+TGG | - | chr3.1:6744322-6744341 | None:intergenic | 30.0% |
| !! | TTGGACTTTAAGATACATAC+TGG | - | chr3.1:6745398-6745417 | None:intergenic | 30.0% |
| !!! | TGGCTCAGGTAATATTTTTT+TGG | + | chr3.1:6744793-6744812 | MS.gene56348:intron | 30.0% |
| !!! | TTAAGGGCCAATTTTTTAGA+AGG | - | chr3.1:6745691-6745710 | None:intergenic | 30.0% |
| !!! | TTTTTTGATGAATGCTTCTG+AGG | - | chr3.1:6743377-6743396 | None:intergenic | 30.0% |
| AAACAGGATCAACATCAAAG+AGG | + | chr3.1:6746745-6746764 | MS.gene56348:intron | 35.0% | |
| AACAGGATCAACATCAAAGA+GGG | + | chr3.1:6746746-6746765 | MS.gene56348:intron | 35.0% | |
| ACACTAACACTTCAGATTGA+AGG | + | chr3.1:6747078-6747097 | MS.gene56348:intron | 35.0% | |
| ACATACTTAAGGGCTTACAA+TGG | + | chr3.1:6743469-6743488 | MS.gene56348:intron | 35.0% | |
| ACCAAATCAACTATGAAGCA+CGG | + | chr3.1:6744516-6744535 | MS.gene56348:intron | 35.0% | |
| AGAGAAGAATACCATGCTTT+AGG | + | chr3.1:6744447-6744466 | MS.gene56348:CDS | 35.0% | |
| ATACAAGTTATCTCAAGTCC+AGG | - | chr3.1:6744874-6744893 | None:intergenic | 35.0% | |
| ATACGTTGTACAGAATAGCT+TGG | + | chr3.1:6744021-6744040 | MS.gene56348:intron | 35.0% | |
| ATCCACTTACTTATCCCAAA+AGG | - | chr3.1:6745207-6745226 | None:intergenic | 35.0% | |
| CATGTAGAACACACATGTTA+AGG | - | chr3.1:6746895-6746914 | None:intergenic | 35.0% | |
| CATTCTGCAAAATAAAGCAG+TGG | + | chr3.1:6746642-6746661 | MS.gene56348:CDS | 35.0% | |
| CGAAAACCTGTTGTGATAAT+AGG | + | chr3.1:6743828-6743847 | MS.gene56348:CDS | 35.0% | |
| GAAAGCTTATATTTAGACCG+AGG | - | chr3.1:6744946-6744965 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAAGAACTCT+CGG | - | chr3.1:6742939-6742958 | None:intergenic | 35.0% | |
| GAGCTTCGACATCTATATTA+TGG | + | chr3.1:6743781-6743800 | MS.gene56348:CDS | 35.0% | |
| GCAATTAGACTATGAAACAC+TGG | - | chr3.1:6747193-6747212 | None:intergenic | 35.0% | |
| GCAGGTTAATATAGAGGTAA+AGG | - | chr3.1:6743235-6743254 | None:intergenic | 35.0% | |
| GCTTCGACATCTATATTATG+GGG | + | chr3.1:6743783-6743802 | MS.gene56348:CDS | 35.0% | |
| GGTAATATTCTTGCAGTATC+AGG | + | chr3.1:6745945-6745964 | MS.gene56348:CDS | 35.0% | |
| GGTATTATAATGTTCCAGCT+TGG | + | chr3.1:6746187-6746206 | MS.gene56348:CDS | 35.0% | |
| GTGATAGGAACTATGAAACA+CGG | - | chr3.1:6742392-6742411 | None:intergenic | 35.0% | |
| TACGTTGTACAGAATAGCTT+GGG | + | chr3.1:6744022-6744041 | MS.gene56348:intron | 35.0% | |
| TAGTAGCAATTTCCTGCATT+TGG | + | chr3.1:6745369-6745388 | MS.gene56348:CDS | 35.0% | |
| TATCACTCACCATGAAATAG+AGG | - | chr3.1:6742490-6742509 | None:intergenic | 35.0% | |
| TATGAAGTATGAACACTCCT+CGG | - | chr3.1:6744672-6744691 | None:intergenic | 35.0% | |
| TCCAAATTTAGGTACTACCT+CGG | + | chr3.1:6744926-6744945 | MS.gene56348:intron | 35.0% | |
| TGCAATTACGGTCACAAAAT+AGG | - | chr3.1:6743086-6743105 | None:intergenic | 35.0% | |
| TGTAAGTATACATGCAACTG+AGG | + | chr3.1:6743862-6743881 | MS.gene56348:intron | 35.0% | |
| TTATCCCAAAAGGAATCCTT+TGG | - | chr3.1:6745197-6745216 | None:intergenic | 35.0% | |
| TTCATCCATAACTTCATCAC+AGG | - | chr3.1:6743257-6743276 | None:intergenic | 35.0% | |
| TTCATTGGAGATAAAGGGTT+AGG | - | chr3.1:6746031-6746050 | None:intergenic | 35.0% | |
| TTCGTTCTTGGAGGTTTAAA+TGG | + | chr3.1:6744286-6744305 | MS.gene56348:CDS | 35.0% | |
| TTGTTAACTGCAGCTTAACT+TGG | + | chr3.1:6747346-6747365 | MS.gene56348:intron | 35.0% | |
| ! | AAGAAGTATGGAAACCTGTA+GGG | - | chr3.1:6745317-6745336 | None:intergenic | 35.0% |
| ! | AATTGACTTCGCTAAAACTC+AGG | + | chr3.1:6746523-6746542 | MS.gene56348:intron | 35.0% |
| ! | CACTTGCACGTAAACTTTTA+TGG | + | chr3.1:6746057-6746076 | MS.gene56348:intron | 35.0% |
| ! | CCCCTTTAAAAAGTTCTGTT+TGG | + | chr3.1:6746685-6746704 | MS.gene56348:intron | 35.0% |
| ! | TAAAACATCTGCATCGATGT+AGG | + | chr3.1:6745565-6745584 | MS.gene56348:intron | 35.0% |
| !! | TCATGATATTGCTTTTGCAG+AGG | + | chr3.1:6745745-6745764 | MS.gene56348:CDS | 35.0% |
| !!! | TTCCTTTTGGGATAAGTAAG+TGG | + | chr3.1:6745202-6745221 | MS.gene56348:intron | 35.0% |
| AACTTGGTCACAAAAGAGGA+TGG | + | chr3.1:6747362-6747381 | MS.gene56348:CDS | 40.0% | |
| AAGTATACATGCAACTGAGG+TGG | + | chr3.1:6743865-6743884 | MS.gene56348:intron | 40.0% | |
| ACAGGATCAACATCAAAGAG+GGG | + | chr3.1:6746747-6746766 | MS.gene56348:intron | 40.0% | |
| ACATGAAACGTATCGCAAGT+AGG | - | chr3.1:6742833-6742852 | None:intergenic | 40.0% | |
| ACCGAGGTAGTACCTAAATT+TGG | - | chr3.1:6744930-6744949 | None:intergenic | 40.0% | |
| AGATAAAGGGTTAGGAAGGA+AGG | - | chr3.1:6746023-6746042 | None:intergenic | 40.0% | |
| ATAGCTGAGACAATGAAGCA+CGG | - | chr3.1:6745341-6745360 | None:intergenic | 40.0% | |
| ATGTCAGCATGCAAGGTAAT+TGG | + | chr3.1:6746796-6746815 | MS.gene56348:CDS | 40.0% | |
| CAGTTGATTGTCCTAAAGCA+TGG | - | chr3.1:6744461-6744480 | None:intergenic | 40.0% | |
| CCATCTGTGTCTCCAAATTT+AGG | + | chr3.1:6744915-6744934 | MS.gene56348:intron | 40.0% | |
| CCTAAATTTGGAGACACAGA+TGG | - | chr3.1:6744918-6744937 | None:intergenic | 40.0% | |
| CCTGACAACATTGTCATGAA+GGG | - | chr3.1:6746389-6746408 | None:intergenic | 40.0% | |
| CTCACCATGAAATAGAGGTA+TGG | - | chr3.1:6742485-6742504 | None:intergenic | 40.0% | |
| CTGACAACATTGTCATGAAG+GGG | - | chr3.1:6746388-6746407 | None:intergenic | 40.0% | |
| CTGATTGATATAAGCCAAGC+TGG | - | chr3.1:6746204-6746223 | None:intergenic | 40.0% | |
| CTTACCTACATAACCAGCAT+AGG | - | chr3.1:6743655-6743674 | None:intergenic | 40.0% | |
| GAAGATATCAGTTCCTATGC+TGG | + | chr3.1:6743639-6743658 | MS.gene56348:CDS | 40.0% | |
| GGACACAAACAATTCTCACA+TGG | - | chr3.1:6742604-6742623 | None:intergenic | 40.0% | |
| GTGTCTGTGCTTCATAGTAT+AGG | - | chr3.1:6742257-6742276 | None:intergenic | 40.0% | |
| GTTACGATGAGATTCGTTCT+TGG | + | chr3.1:6744274-6744293 | MS.gene56348:CDS | 40.0% | |
| TCAACTATGAAGCACGGATA+CGG | + | chr3.1:6744522-6744541 | MS.gene56348:intron | 40.0% | |
| TCACAGGCAGGTTAATATAG+AGG | - | chr3.1:6743241-6743260 | None:intergenic | 40.0% | |
| TCCGTGCTTCATAGTTGATT+TGG | - | chr3.1:6744520-6744539 | None:intergenic | 40.0% | |
| TGAGAATTGTCCTGGTTGTA+AGG | + | chr3.1:6742097-6742116 | MS.gene56348:intron | 40.0% | |
| TTCGCTAAAACTCAGGAGAT+CGG | + | chr3.1:6746530-6746549 | MS.gene56348:intron | 40.0% | |
| TTGGAGATAAAGGGTTAGGA+AGG | - | chr3.1:6746027-6746046 | None:intergenic | 40.0% | |
| ! | AGGTTTTCGACCATATCGAT+CGG | - | chr3.1:6743817-6743836 | None:intergenic | 40.0% |
| ! | AGTTCCTATGCTGGTTATGT+AGG | + | chr3.1:6743648-6743667 | MS.gene56348:CDS | 40.0% |
| ! | CAAGAAGTATGGAAACCTGT+AGG | - | chr3.1:6745318-6745337 | None:intergenic | 40.0% |
| ! | CAAGACATTGAAGCCCTTTT+TGG | - | chr3.1:6744170-6744189 | None:intergenic | 40.0% |
| ! | GCTTAACTTGGTCACAAAAG+AGG | + | chr3.1:6747358-6747377 | MS.gene56348:intron | 40.0% |
| ! | GGCTTTTCATTTGTTCCTTC+TGG | + | chr3.1:6744814-6744833 | MS.gene56348:intron | 40.0% |
| ! | GGTTGATGCAACTGCAATTA+CGG | - | chr3.1:6743098-6743117 | None:intergenic | 40.0% |
| ! | GTAATTGTATGTGTCGGTGT+CGG | - | chr3.1:6742305-6742324 | None:intergenic | 40.0% |
| ! | TCAGATTGAAGGTGTGTTTG+TGG | + | chr3.1:6747089-6747108 | MS.gene56348:intron | 40.0% |
| !! | GGAGGTTTAAATGGTTTGCT+TGG | + | chr3.1:6744295-6744314 | MS.gene56348:CDS | 40.0% |
| AACTCTCGGAGAAGAAGATG+AGG | - | chr3.1:6742925-6742944 | None:intergenic | 45.0% | |
| AACTGCTATGTCAGCATGCA+AGG | + | chr3.1:6746789-6746808 | MS.gene56348:CDS | 45.0% | |
| AAGGGGAAGCTTTGCAAGAT+AGG | - | chr3.1:6746371-6746390 | None:intergenic | 45.0% | |
| AAGTATGGAAACCTGTAGGG+AGG | - | chr3.1:6745314-6745333 | None:intergenic | 45.0% | |
| ACATACTGGTAGCCAAATGC+AGG | - | chr3.1:6745384-6745403 | None:intergenic | 45.0% | |
| ACCTGCCTGTGATGAAGTTA+TGG | + | chr3.1:6743249-6743268 | MS.gene56348:intron | 45.0% | |
| ACGATGAGATTCGTTCTTGG+AGG | + | chr3.1:6744277-6744296 | MS.gene56348:CDS | 45.0% | |
| ACTCTCTCTCTCTTTCGAAG+AGG | - | chr3.1:6742890-6742909 | None:intergenic | 45.0% | |
| AGACTATGAAACACTGGCAC+TGG | - | chr3.1:6747187-6747206 | None:intergenic | 45.0% | |
| AGGTTAGGCGGTTTGAACTT+TGG | + | chr3.1:6745909-6745928 | MS.gene56348:CDS | 45.0% | |
| AGTTGAGAGTTATACCTGGG+AGG | - | chr3.1:6747398-6747417 | None:intergenic | 45.0% | |
| ATAGGATCTGCCTACATGCT+TGG | + | chr3.1:6743756-6743775 | MS.gene56348:intron | 45.0% | |
| ATGAAACACGGATACGCACA+CGG | - | chr3.1:6742380-6742399 | None:intergenic | 45.0% | |
| ATGAAGCACGGCAAGAAGTA+TGG | - | chr3.1:6745329-6745348 | None:intergenic | 45.0% | |
| CAAAACCTAAACCTCCCTAC+AGG | + | chr3.1:6745300-6745319 | MS.gene56348:intron | 45.0% | |
| CAGCTAAATTGACGAGCTGA+GGG | - | chr3.1:6742810-6742829 | None:intergenic | 45.0% | |
| CATCAAAGAGGGGTAGCAAA+TGG | + | chr3.1:6746757-6746776 | MS.gene56348:CDS | 45.0% | |
| CCATCCAAAAACTCGTGCAA+AGG | - | chr3.1:6744252-6744271 | None:intergenic | 45.0% | |
| CCCTTCATGACAATGTTGTC+AGG | + | chr3.1:6746386-6746405 | MS.gene56348:CDS | 45.0% | |
| GAATTGTCCTGGTTGTAAGG+TGG | + | chr3.1:6742100-6742119 | MS.gene56348:intron | 45.0% | |
| GAGCGATATCGAGGTTGAAA+AGG | + | chr3.1:6746495-6746514 | MS.gene56348:intron | 45.0% | |
| GCCTGACAACATTGTCATGA+AGG | - | chr3.1:6746390-6746409 | None:intergenic | 45.0% | |
| GGAATGATAGCCGATCGATA+TGG | + | chr3.1:6743804-6743823 | MS.gene56348:CDS | 45.0% | |
| GTGCTTCATTGTCTCAGCTA+TGG | + | chr3.1:6745340-6745359 | MS.gene56348:CDS | 45.0% | |
| TCCATAACTTCATCACAGGC+AGG | - | chr3.1:6743253-6743272 | None:intergenic | 45.0% | |
| TTGTAAGGTGGATCAAGCCA+AGG | + | chr3.1:6742112-6742131 | MS.gene56348:intron | 45.0% | |
| ! | ACCAGCATTGGGAGGTTATT+TGG | + | chr3.1:6744773-6744792 | MS.gene56348:CDS | 45.0% |
| ! | ATTGGGAGGTTATTTGGCTC+AGG | + | chr3.1:6744779-6744798 | MS.gene56348:CDS | 45.0% |
| ! | TGGGTTGACATGACGCTATT+TGG | + | chr3.1:6746077-6746096 | MS.gene56348:intron | 45.0% |
| ! | TTGGTCTTTGGACCAGCATT+GGG | + | chr3.1:6744762-6744781 | MS.gene56348:CDS | 45.0% |
| ! | TTTGGTCTTTGGACCAGCAT+TGG | + | chr3.1:6744761-6744780 | MS.gene56348:CDS | 45.0% |
| !! | ACGTGGAAGGAGTACTAACT+AGG | - | chr3.1:6742787-6742806 | None:intergenic | 45.0% |
| !! | ATTTCAGGTTGCAGCTGCTT+GGG | + | chr3.1:6744731-6744750 | MS.gene56348:intron | 45.0% |
| !! | CCTTTGCACGAGTTTTTGGA+TGG | + | chr3.1:6744249-6744268 | MS.gene56348:CDS | 45.0% |
| !! | TGGTTTGCTTGGACCAATGA+AGG | + | chr3.1:6744306-6744325 | MS.gene56348:CDS | 45.0% |
| !! | TTGGCCTTTGCACGAGTTTT+TGG | + | chr3.1:6744245-6744264 | MS.gene56348:CDS | 45.0% |
| AAGGTAATTGGTCCAGCTGG+AGG | + | chr3.1:6746808-6746827 | MS.gene56348:CDS | 50.0% | |
| ACAACCAACGAGCGATATCG+AGG | + | chr3.1:6746486-6746505 | MS.gene56348:intron | 50.0% | |
| AGCGATAGTGTGTGTCTGCA+TGG | + | chr3.1:6743011-6743030 | MS.gene56348:intron | 50.0% | |
| ATGAAGCACGGATACGGACT+CGG | + | chr3.1:6744528-6744547 | MS.gene56348:intron | 50.0% | |
| ATGGATGCTTCTTACCTCCC+AGG | + | chr3.1:6747381-6747400 | MS.gene56348:CDS | 50.0% | |
| ATTAGCGTCTGAGTCGTGTC+CGG | + | chr3.1:6742351-6742370 | MS.gene56348:intron | 50.0% | |
| CGAAGCTCTACCAAGCATGT+AGG | - | chr3.1:6743769-6743788 | None:intergenic | 50.0% | |
| GAAAGTCCTCGAAGGTTAGG+CGG | + | chr3.1:6745897-6745916 | MS.gene56348:CDS | 50.0% | |
| GATTAGACGTGTCACGGTGT+CGG | - | chr3.1:6744650-6744669 | None:intergenic | 50.0% | |
| GCACAGACACTCCTCAGATT+AGG | + | chr3.1:6742267-6742286 | MS.gene56348:intron | 50.0% | |
| GCAGCTAAATTGACGAGCTG+AGG | - | chr3.1:6742811-6742830 | None:intergenic | 50.0% | |
| GCCAAATAACCTCCCAATGC+TGG | - | chr3.1:6744777-6744796 | None:intergenic | 50.0% | |
| GCTGAAAGTCCTCGAAGGTT+AGG | + | chr3.1:6745894-6745913 | MS.gene56348:CDS | 50.0% | |
| GCTTGATCCACCTTACAACC+AGG | - | chr3.1:6742110-6742129 | None:intergenic | 50.0% | |
| GGAAACCTGTAGGGAGGTTT+AGG | - | chr3.1:6745308-6745327 | None:intergenic | 50.0% | |
| GTCAGTGTCCATGTCGTGTT+TGG | - | chr3.1:6744557-6744576 | None:intergenic | 50.0% | |
| TCAACCTCGATATCGCTCGT+TGG | - | chr3.1:6746493-6746512 | None:intergenic | 50.0% | |
| TCCTCAGATTAGGCATGTCC+CGG | + | chr3.1:6742277-6742296 | MS.gene56348:intron | 50.0% | |
| TGCAAGGTAATTGGTCCAGC+TGG | + | chr3.1:6746805-6746824 | MS.gene56348:CDS | 50.0% | |
| TGTGTCTGCATGGCTCAGTT+TGG | + | chr3.1:6743021-6743040 | MS.gene56348:intron | 50.0% | |
| TTCAAACCGCCTAACCTTCG+AGG | - | chr3.1:6745906-6745925 | None:intergenic | 50.0% | |
| ! | TATGGGCTGAAAGTCCTCGA+AGG | + | chr3.1:6745889-6745908 | MS.gene56348:CDS | 50.0% |
| ! | TCCTCGGATTAGACGTGTCA+CGG | - | chr3.1:6744656-6744675 | None:intergenic | 50.0% |
| ! | TGGGGAGTAGGTTTGGTCTT+TGG | + | chr3.1:6744750-6744769 | MS.gene56348:CDS | 50.0% |
| !! | GATTTCAGGTTGCAGCTGCT+TGG | + | chr3.1:6744730-6744749 | MS.gene56348:intron | 50.0% |
| !! | TTTCAGGTTGCAGCTGCTTG+GGG | + | chr3.1:6744732-6744751 | MS.gene56348:intron | 50.0% |
| AATTGACGAGCTGAGGGACG+TGG | - | chr3.1:6742804-6742823 | None:intergenic | 55.0% | |
| ACCGGGACATGCCTAATCTG+AGG | - | chr3.1:6742281-6742300 | None:intergenic | 55.0% | |
| ACCGTGACACGTCTAATCCG+AGG | + | chr3.1:6744652-6744671 | MS.gene56348:intron | 55.0% | |
| AGCTGCTTGGGGAGTAGGTT+TGG | + | chr3.1:6744743-6744762 | MS.gene56348:CDS | 55.0% | |
| ATCGTTCTTGCTCGCATCGC+AGG | + | chr3.1:6746244-6746263 | MS.gene56348:CDS | 55.0% | |
| CTCGGACACCAAACACGACA+TGG | + | chr3.1:6744546-6744565 | MS.gene56348:intron | 55.0% | |
| GCGATGCGAGCAAGAACGAT+AGG | - | chr3.1:6746244-6746263 | None:intergenic | 55.0% | |
| GTAATTGGTCCAGCTGGAGG+CGG | + | chr3.1:6746811-6746830 | MS.gene56348:CDS | 55.0% | |
| TCGTTCTTGCTCGCATCGCA+GGG | + | chr3.1:6746245-6746264 | MS.gene56348:CDS | 55.0% | |
| ! | GTCTTTGGACCAGCATTGGG+AGG | + | chr3.1:6744765-6744784 | MS.gene56348:CDS | 55.0% |
| ACGGATACGCACACGGACAC+CGG | - | chr3.1:6742373-6742392 | None:intergenic | 60.0% | |
| CGTTCTTGCTCGCATCGCAG+GGG | + | chr3.1:6746246-6746265 | MS.gene56348:CDS | 60.0% | |
| GTTGCAGCTGCTTGGGGAGT+AGG | + | chr3.1:6744738-6744757 | MS.gene56348:CDS | 60.0% | |
| !! | GTATGTGTCGGTGTCGGCAC+CGG | - | chr3.1:6742299-6742318 | None:intergenic | 60.0% |
| !! | TATGTGTCGGTGTCGGCACC+GGG | - | chr3.1:6742298-6742317 | None:intergenic | 60.0% |
| GACGAGCTGAGGGACGTGGA+AGG | - | chr3.1:6742800-6742819 | None:intergenic | 65.0% | |
| CACATTGCGCCGCCTCCAGC+TGG | - | chr3.1:6746823-6746842 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 6742053 | 6747419 | 6742053 | ID=MS.gene56348 |
| chr3.1 | mRNA | 6742053 | 6747419 | 6742053 | ID=MS.gene56348.t1;Parent=MS.gene56348 |
| chr3.1 | exon | 6742053 | 6742113 | 6742053 | ID=MS.gene56348.t1.exon1;Parent=MS.gene56348.t1 |
| chr3.1 | CDS | 6742053 | 6742113 | 6742053 | ID=cds.MS.gene56348.t1;Parent=MS.gene56348.t1 |
| chr3.1 | exon | 6742459 | 6742499 | 6742459 | ID=MS.gene56348.t1.exon2;Parent=MS.gene56348.t1 |
| chr3.1 | CDS | 6742459 | 6742499 | 6742459 | ID=cds.MS.gene56348.t1;Parent=MS.gene56348.t1 |
| chr3.1 | exon | 6743609 | 6743669 | 6743609 | ID=MS.gene56348.t1.exon3;Parent=MS.gene56348.t1 |
| chr3.1 | CDS | 6743609 | 6743669 | 6743609 | ID=cds.MS.gene56348.t1;Parent=MS.gene56348.t1 |
| chr3.1 | exon | 6743760 | 6743862 | 6743760 | ID=MS.gene56348.t1.exon4;Parent=MS.gene56348.t1 |
| chr3.1 | CDS | 6743760 | 6743862 | 6743760 | ID=cds.MS.gene56348.t1;Parent=MS.gene56348.t1 |
| chr3.1 | exon | 6744225 | 6744327 | 6744225 | ID=MS.gene56348.t1.exon5;Parent=MS.gene56348.t1 |
| chr3.1 | CDS | 6744225 | 6744327 | 6744225 | ID=cds.MS.gene56348.t1;Parent=MS.gene56348.t1 |
| chr3.1 | exon | 6744426 | 6744479 | 6744426 | ID=MS.gene56348.t1.exon6;Parent=MS.gene56348.t1 |
| chr3.1 | CDS | 6744426 | 6744479 | 6744426 | ID=cds.MS.gene56348.t1;Parent=MS.gene56348.t1 |
| chr3.1 | exon | 6744738 | 6744800 | 6744738 | ID=MS.gene56348.t1.exon7;Parent=MS.gene56348.t1 |
| chr3.1 | CDS | 6744738 | 6744800 | 6744738 | ID=cds.MS.gene56348.t1;Parent=MS.gene56348.t1 |
| chr3.1 | exon | 6745167 | 6745216 | 6745167 | ID=MS.gene56348.t1.exon8;Parent=MS.gene56348.t1 |
| chr3.1 | CDS | 6745167 | 6745216 | 6745167 | ID=cds.MS.gene56348.t1;Parent=MS.gene56348.t1 |
| chr3.1 | exon | 6745322 | 6745397 | 6745322 | ID=MS.gene56348.t1.exon9;Parent=MS.gene56348.t1 |
| chr3.1 | CDS | 6745322 | 6745397 | 6745322 | ID=cds.MS.gene56348.t1;Parent=MS.gene56348.t1 |
| chr3.1 | exon | 6745587 | 6745766 | 6745587 | ID=MS.gene56348.t1.exon10;Parent=MS.gene56348.t1 |
| chr3.1 | CDS | 6745587 | 6745766 | 6745587 | ID=cds.MS.gene56348.t1;Parent=MS.gene56348.t1 |
| chr3.1 | exon | 6745879 | 6745966 | 6745879 | ID=MS.gene56348.t1.exon11;Parent=MS.gene56348.t1 |
| chr3.1 | CDS | 6745879 | 6745966 | 6745879 | ID=cds.MS.gene56348.t1;Parent=MS.gene56348.t1 |
| chr3.1 | exon | 6746182 | 6746267 | 6746182 | ID=MS.gene56348.t1.exon12;Parent=MS.gene56348.t1 |
| chr3.1 | CDS | 6746182 | 6746267 | 6746182 | ID=cds.MS.gene56348.t1;Parent=MS.gene56348.t1 |
| chr3.1 | exon | 6746356 | 6746463 | 6746356 | ID=MS.gene56348.t1.exon13;Parent=MS.gene56348.t1 |
| chr3.1 | CDS | 6746356 | 6746463 | 6746356 | ID=cds.MS.gene56348.t1;Parent=MS.gene56348.t1 |
| chr3.1 | exon | 6746619 | 6746663 | 6746619 | ID=MS.gene56348.t1.exon14;Parent=MS.gene56348.t1 |
| chr3.1 | CDS | 6746619 | 6746663 | 6746619 | ID=cds.MS.gene56348.t1;Parent=MS.gene56348.t1 |
| chr3.1 | exon | 6746751 | 6746839 | 6746751 | ID=MS.gene56348.t1.exon15;Parent=MS.gene56348.t1 |
| chr3.1 | CDS | 6746751 | 6746839 | 6746751 | ID=cds.MS.gene56348.t1;Parent=MS.gene56348.t1 |
| chr3.1 | exon | 6747359 | 6747419 | 6747359 | ID=MS.gene56348.t1.exon16;Parent=MS.gene56348.t1 |
| chr3.1 | CDS | 6747359 | 6747419 | 6747359 | ID=cds.MS.gene56348.t1;Parent=MS.gene56348.t1 |
| Gene Sequence |
| Protein sequence |
