Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51995.t1 | XP_003598370.1 | 97.7 | 479 | 11 | 0 | 1 | 479 | 1 | 479 | 3.10E-269 | 937.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51995.t1 | Q94BZ1 | 56.1 | 474 | 204 | 3 | 2 | 472 | 3 | 475 | 1.6e-157 | 557.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51995.t1 | G7IVI3 | 97.7 | 479 | 11 | 0 | 1 | 479 | 1 | 479 | 2.2e-269 | 937.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51995.t1 | MTR_3g010850 | 97.297 | 481 | 13 | 0 | 1 | 481 | 1 | 481 | 0.0 | 964 |
| MS.gene51995.t1 | MTR_3g010850 | 95.034 | 443 | 22 | 0 | 39 | 481 | 27 | 469 | 0.0 | 819 |
| MS.gene51995.t1 | MTR_3g010820 | 70.697 | 488 | 135 | 5 | 1 | 481 | 1 | 487 | 0.0 | 710 |
| MS.gene51995.t1 | MTR_8g062990 | 69.835 | 484 | 140 | 4 | 3 | 481 | 5 | 487 | 0.0 | 708 |
| MS.gene51995.t1 | MTR_8g042770 | 64.050 | 484 | 170 | 2 | 2 | 481 | 4 | 487 | 0.0 | 680 |
| MS.gene51995.t1 | MTR_8g042780 | 65.000 | 480 | 161 | 3 | 6 | 481 | 4 | 480 | 0.0 | 671 |
| MS.gene51995.t1 | MTR_8g042870 | 64.669 | 484 | 164 | 3 | 2 | 481 | 4 | 484 | 0.0 | 644 |
| MS.gene51995.t1 | MTR_3g086440 | 69.248 | 452 | 135 | 2 | 2 | 450 | 4 | 454 | 0.0 | 639 |
| MS.gene51995.t1 | MTR_8g042780 | 64.884 | 430 | 145 | 2 | 6 | 432 | 4 | 430 | 0.0 | 606 |
| MS.gene51995.t1 | MTR_8g042820 | 63.251 | 283 | 98 | 2 | 152 | 431 | 34 | 313 | 6.11e-132 | 384 |
| MS.gene51995.t1 | MTR_1194s0010 | 65.753 | 146 | 50 | 0 | 6 | 151 | 4 | 149 | 1.89e-67 | 213 |
| MS.gene51995.t1 | MTR_1157s0010 | 62.500 | 152 | 57 | 0 | 323 | 474 | 1 | 152 | 6.23e-62 | 199 |
| MS.gene51995.t1 | MTR_3g010900 | 52.688 | 93 | 20 | 2 | 363 | 431 | 1 | 93 | 1.36e-18 | 80.9 |
| MS.gene51995.t1 | MTR_3g010840 | 76.087 | 46 | 7 | 2 | 1 | 43 | 1 | 45 | 1.15e-15 | 71.6 |
| MS.gene51995.t1 | MTR_8g075280 | 33.161 | 193 | 95 | 7 | 37 | 228 | 103 | 262 | 7.57e-14 | 72.4 |
| MS.gene51995.t1 | MTR_8g075280 | 47.959 | 98 | 34 | 3 | 37 | 133 | 103 | 184 | 1.29e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51995.t1 | AT5G13750 | 55.882 | 476 | 206 | 3 | 2 | 474 | 3 | 477 | 0.0 | 576 |
| MS.gene51995.t1 | AT5G13740 | 53.512 | 484 | 213 | 3 | 2 | 474 | 3 | 485 | 0.0 | 542 |
| MS.gene51995.t1 | AT3G43790 | 52.000 | 475 | 219 | 4 | 2 | 470 | 3 | 474 | 0.0 | 518 |
| MS.gene51995.t1 | AT3G43790 | 52.000 | 475 | 219 | 4 | 2 | 470 | 3 | 474 | 0.0 | 518 |
| MS.gene51995.t1 | AT3G43790 | 51.351 | 481 | 219 | 5 | 2 | 470 | 3 | 480 | 1.68e-179 | 512 |
| MS.gene51995.t1 | AT3G43790 | 51.351 | 481 | 219 | 5 | 2 | 470 | 3 | 480 | 1.68e-179 | 512 |
| MS.gene51995.t1 | AT5G13740 | 53.759 | 439 | 191 | 3 | 2 | 429 | 3 | 440 | 5.90e-175 | 499 |
| MS.gene51995.t1 | AT5G13750 | 55.147 | 408 | 179 | 3 | 2 | 406 | 3 | 409 | 3.08e-172 | 491 |
| MS.gene51995.t1 | AT5G13750 | 55.147 | 408 | 179 | 3 | 2 | 406 | 3 | 409 | 3.08e-172 | 491 |
| MS.gene51995.t1 | AT5G13750 | 55.754 | 391 | 170 | 2 | 87 | 474 | 1 | 391 | 4.08e-164 | 469 |
| MS.gene51995.t1 | AT3G43790 | 51.232 | 406 | 189 | 4 | 2 | 401 | 3 | 405 | 2.35e-150 | 435 |
| MS.gene51995.t1 | AT5G13940 | 44.186 | 86 | 32 | 1 | 267 | 352 | 8 | 77 | 1.17e-15 | 80.1 |
| MS.gene51995.t1 | AT5G13940 | 44.186 | 86 | 32 | 1 | 267 | 352 | 159 | 228 | 1.36e-15 | 80.1 |
Find 106 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCCTTTGGAAATATATT+TGG | 0.129831 | 3.3:-6146624 | None:intergenic |
| GATATAATCATGGAAGATTT+TGG | 0.157444 | 3.3:+6143626 | None:intergenic |
| TTAGAAATGCTTTCAATATA+TGG | 0.182082 | 3.3:+6143738 | MS.gene51995:CDS |
| ACCAGCGTTGGGAGGTTATT+TGG | 0.223348 | 3.3:+6146102 | MS.gene51995:CDS |
| ATCGTTCTTGCTCGCATTGC+AGG | 0.223591 | 3.3:+6147690 | MS.gene51995:CDS |
| GAGCTTCGACATCTATATTA+TGG | 0.224672 | 3.3:+6145376 | MS.gene51995:CDS |
| AAAATTGAAGCTTTAGAAAA+TGG | 0.231093 | 3.3:+6147065 | MS.gene51995:CDS |
| AATCAAAAGATTCTTTAAAA+TGG | 0.235629 | 3.3:-6147887 | None:intergenic |
| AACAATGATAGACGACATTA+AGG | 0.243682 | 3.3:-6147150 | None:intergenic |
| CGAAAACCTGTTGTGATAAT+AGG | 0.246718 | 3.3:+6145423 | MS.gene51995:CDS |
| ATTTCAGGTTGCAGCTGCTT+GGG | 0.282569 | 3.3:+6146060 | MS.gene51995:intron |
| AGAGAAGAATACCATGCTTT+AGG | 0.288390 | 3.3:+6145951 | MS.gene51995:CDS |
| ATTTCCATACCTCTATTTCA+TGG | 0.316231 | 3.3:+6144080 | MS.gene51995:CDS |
| TACATTGCGCCGCCTCCTGC+TGG | 0.330306 | 3.3:-6148281 | None:intergenic |
| AAGGGGAAGCTTTGCAAGAT+TGG | 0.330711 | 3.3:-6147814 | None:intergenic |
| AGCTGCTTGGGGAGTAGGTT+TGG | 0.331753 | 3.3:+6146072 | MS.gene51995:CDS |
| TTCGTTCTTGGAGGTTTAAA+TGG | 0.333038 | 3.3:+6145790 | MS.gene51995:CDS |
| TATTTCCAAAGGATTCCTTT+TGG | 0.334733 | 3.3:+6146631 | MS.gene51995:CDS |
| ATGAAACATGGTAAGAAGTA+TGG | 0.343134 | 3.3:-6146767 | None:intergenic |
| TCAAGCAAAGGAATTGAAAA+AGG | 0.346170 | 3.3:+6143706 | MS.gene51995:CDS |
| ATGTCAGCTTGCAAGGTAAT+TGG | 0.359185 | 3.3:+6148257 | MS.gene51995:CDS |
| TTATCCCAAAAGGAATCCTT+TGG | 0.364927 | 3.3:-6146636 | None:intergenic |
| TTGTAGCGATTTCCTGCATT+TGG | 0.367105 | 3.3:+6146810 | MS.gene51995:CDS |
| GATTTCAGGTTGCAGCTGCT+TGG | 0.382034 | 3.3:+6146059 | MS.gene51995:intron |
| GGTAGTATTCTTGCAGTATC+AGG | 0.385556 | 3.3:+6147391 | MS.gene51995:CDS |
| GTTGCAGCTGCTTGGGGAGT+AGG | 0.394368 | 3.3:+6146067 | MS.gene51995:CDS |
| TGGGGAGTAGGTTTGGTCTT+CGG | 0.394927 | 3.3:+6146079 | MS.gene51995:CDS |
| TTTGTGCTCAATGCTATTGA+AGG | 0.396431 | 3.3:+6149544 | MS.gene51995:CDS |
| CCCTTCATGACAATGTTGTC+CGG | 0.397110 | 3.3:+6147832 | MS.gene51995:CDS |
| AGCTTCGACATCTATATTAT+GGG | 0.397954 | 3.3:+6145377 | MS.gene51995:CDS |
| ATATTTGGATATTTCTGTAC+TGG | 0.401992 | 3.3:-6146609 | None:intergenic |
| GGAGGTTTAAATGGTTTGCT+TGG | 0.407712 | 3.3:+6145799 | MS.gene51995:CDS |
| ATAATTCCTATTATCACAAC+AGG | 0.416010 | 3.3:-6145429 | None:intergenic |
| AGGGGAAGCTTTGCAAGATT+GGG | 0.422814 | 3.3:-6147813 | None:intergenic |
| TTGGTCTTCGGACCAGCGTT+GGG | 0.424792 | 3.3:+6146091 | MS.gene51995:CDS |
| GTTACGATGAGATTCGTTCT+TGG | 0.428895 | 3.3:+6145778 | MS.gene51995:CDS |
| TCGTTCTTGCTCGCATTGCA+GGG | 0.434116 | 3.3:+6147691 | MS.gene51995:CDS |
| TTGCTAACTGCAGCTTAACT+TGG | 0.445151 | 3.3:+6148823 | MS.gene51995:intron |
| AGGTTAGGCGGTTTGAACTT+TGG | 0.449468 | 3.3:+6147355 | MS.gene51995:CDS |
| GTTGGGAGGTTATTTGGCTC+AGG | 0.476794 | 3.3:+6146108 | MS.gene51995:CDS |
| GCTGAAAGTCCTCGAAGGTT+AGG | 0.476875 | 3.3:+6147340 | MS.gene51995:CDS |
| TGGTTTGCTTGGACCAATGA+AGG | 0.480844 | 3.3:+6145810 | MS.gene51995:CDS |
| TTCAAACCGCCTAACCTTCG+AGG | 0.482253 | 3.3:-6147349 | None:intergenic |
| TATGGAAATAGAGATGCTAT+AGG | 0.483386 | 3.3:-6144066 | None:intergenic |
| CATCAAAGAGGGGTAGCAAA+TGG | 0.491220 | 3.3:+6148218 | MS.gene51995:CDS |
| GGTATTATATTGTTTCAGCT+TGG | 0.498554 | 3.3:+6147633 | MS.gene51995:CDS |
| ATGTTTCATTGTATCAGCTA+TGG | 0.502475 | 3.3:+6146781 | MS.gene51995:CDS |
| AACTGCTATGTCAGCTTGCA+AGG | 0.504121 | 3.3:+6148250 | MS.gene51995:CDS |
| TTTGGTCTTCGGACCAGCGT+TGG | 0.508494 | 3.3:+6146090 | MS.gene51995:CDS |
| ATGGATGCTTCTTTCCTCCC+AGG | 0.509789 | 3.3:+6148858 | MS.gene51995:CDS |
| TATTATCATGAGAATTGTCC+TGG | 0.510827 | 3.3:+6143671 | MS.gene51995:CDS |
| GATTTCCTGCATTTGGCTAC+CGG | 0.512707 | 3.3:+6146817 | MS.gene51995:CDS |
| GCCGGACAACATTGTCATGA+AGG | 0.514462 | 3.3:-6147833 | None:intergenic |
| TGCAAGGTAATTGGTCCAGC+AGG | 0.514706 | 3.3:+6148266 | MS.gene51995:CDS |
| ACGATGAGATTCGTTCTTGG+AGG | 0.516830 | 3.3:+6145781 | MS.gene51995:CDS |
| AACAGGATCAACATCAAAGA+GGG | 0.518590 | 3.3:+6148207 | MS.gene51995:intron |
| ATCCACTTACTTATCCCAAA+AGG | 0.518714 | 3.3:-6146646 | None:intergenic |
| ATAGGATCTGCCTACATGCT+TGG | 0.519702 | 3.3:+6145351 | MS.gene51995:intron |
| TTTCAGGTTGCAGCTGCTTG+GGG | 0.522103 | 3.3:+6146061 | MS.gene51995:intron |
| GAAGATATCAGTTCCTATGC+TGG | 0.522329 | 3.3:+6145234 | MS.gene51995:CDS |
| ACCTACCGGTAGCCAAATGC+AGG | 0.524695 | 3.3:-6146822 | None:intergenic |
| TATCACTCACCATGAAATAG+AGG | 0.534625 | 3.3:-6144089 | None:intergenic |
| ATTTAGGAGATAATTTCTAC+TGG | 0.534952 | 3.3:+6148059 | MS.gene51995:intron |
| TGAGAATTGTCCTGGTTGTA+AGG | 0.538655 | 3.3:+6143679 | MS.gene51995:CDS |
| TATCAGTGAAACTGCTCTGA+GGG | 0.538842 | 3.3:-6149616 | None:intergenic |
| ACAATGATAGACGACATTAA+GGG | 0.543229 | 3.3:-6147149 | None:intergenic |
| CTCACCATGAAATAGAGGTA+TGG | 0.553655 | 3.3:-6144084 | None:intergenic |
| GCTTAACTTGGTCACAAAAG+AGG | 0.553665 | 3.3:+6148835 | MS.gene51995:intron |
| AACTTTGGAACTAATGATGT+CGG | 0.555190 | 3.3:+6147370 | MS.gene51995:CDS |
| CCGGACAACATTGTCATGAA+GGG | 0.560290 | 3.3:-6147832 | None:intergenic |
| GCCAAATAACCTCCCAACGC+TGG | 0.567969 | 3.3:-6146103 | None:intergenic |
| CGATATGTACAGTGTAAAGC+CGG | 0.571487 | 3.3:-6147851 | None:intergenic |
| CGTTCTTGCTCGCATTGCAG+GGG | 0.572987 | 3.3:+6147692 | MS.gene51995:CDS |
| CAGTTGATTGTCCTAAAGCA+TGG | 0.574814 | 3.3:-6145962 | None:intergenic |
| GTAATTGGTCCAGCAGGAGG+CGG | 0.576366 | 3.3:+6148272 | MS.gene51995:CDS |
| CTTACCTACGTAACCAGCAT+AGG | 0.578099 | 3.3:-6145247 | None:intergenic |
| GCTTGATCCACCTTACAACC+AGG | 0.582349 | 3.3:-6143689 | None:intergenic |
| GAGCACAAAGAAAACCAGAT+GGG | 0.587663 | 3.3:-6149530 | None:intergenic |
| CGAAGCTCTACCAAGCATGT+AGG | 0.590397 | 3.3:-6145361 | None:intergenic |
| GTCTTCGGACCAGCGTTGGG+AGG | 0.592448 | 3.3:+6146094 | MS.gene51995:CDS |
| GAAGCTTTGCAAGATTGGGA+TGG | 0.593468 | 3.3:-6147809 | None:intergenic |
| ATATCCAAATATATTTCCAA+AGG | 0.595947 | 3.3:+6146620 | MS.gene51995:CDS |
| GGAATGATAGCCGATCGCTA+TGG | 0.606398 | 3.3:+6145399 | MS.gene51995:CDS |
| TCAGTGAAACTGCTCTGAGG+GGG | 0.608467 | 3.3:-6149614 | None:intergenic |
| AGCACAAAGAAAACCAGATG+GGG | 0.612418 | 3.3:-6149529 | None:intergenic |
| AACTTGGTCACAAAAGAGGA+TGG | 0.617641 | 3.3:+6148839 | MS.gene51995:CDS |
| GCAATGCGAGCAAGAACGAT+AGG | 0.622939 | 3.3:-6147687 | None:intergenic |
| GCTTCGACATCTATATTATG+GGG | 0.629817 | 3.3:+6145378 | MS.gene51995:CDS |
| TTGTAAGGTGGATCAAGCAA+AGG | 0.630661 | 3.3:+6143694 | MS.gene51995:CDS |
| TGAGCACAAAGAAAACCAGA+TGG | 0.634471 | 3.3:-6149531 | None:intergenic |
| AAACAGGATCAACATCAAAG+AGG | 0.635198 | 3.3:+6148206 | MS.gene51995:intron |
| GAAAGTCCTCGAAGGTTAGG+CGG | 0.636675 | 3.3:+6147343 | MS.gene51995:CDS |
| CGGACAACATTGTCATGAAG+GGG | 0.639468 | 3.3:-6147831 | None:intergenic |
| AGTTCCTATGCTGGTTACGT+AGG | 0.642878 | 3.3:+6145243 | MS.gene51995:CDS |
| TTTAGAAAATGGAACCAATG+AGG | 0.646034 | 3.3:+6147076 | MS.gene51995:CDS |
| ATATCAGTGAAACTGCTCTG+AGG | 0.650430 | 3.3:-6149617 | None:intergenic |
| AAGGTAATTGGTCCAGCAGG+AGG | 0.651634 | 3.3:+6148269 | MS.gene51995:CDS |
| CAGTGAAACTGCTCTGAGGG+GGG | 0.656061 | 3.3:-6149613 | None:intergenic |
| ATCAGTGAAACTGCTCTGAG+GGG | 0.664864 | 3.3:-6149615 | None:intergenic |
| CATTCTGCAGAATAAAGCAG+TGG | 0.669908 | 3.3:+6148088 | MS.gene51995:CDS |
| GAATTGTCCTGGTTGTAAGG+TGG | 0.684763 | 3.3:+6143682 | MS.gene51995:CDS |
| TATGGGCTGAAAGTCCTCGA+AGG | 0.690573 | 3.3:+6147335 | MS.gene51995:CDS |
| ACAGGATCAACATCAAAGAG+GGG | 0.699202 | 3.3:+6148208 | MS.gene51995:intron |
| ATAGCTGATACAATGAAACA+TGG | 0.704557 | 3.3:-6146779 | None:intergenic |
| GCACAAAGAAAACCAGATGG+GGG | 0.709624 | 3.3:-6149528 | None:intergenic |
| TTAGTTGAGTCATACCTGGG+AGG | 0.730031 | 3.3:-6148872 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTAGTAGTATTAATA+AGG | - | chr3.3:6146343-6146362 | None:intergenic | 10.0% |
| !! | ATATGAAAAAATTATACAAA+GGG | + | chr3.3:6146450-6146469 | MS.gene51995:intron | 10.0% |
| !! | TAAATATGAAATATTTGAAT+GGG | - | chr3.3:6148609-6148628 | None:intergenic | 10.0% |
| !! | TATATGAAAAAATTATACAA+AGG | + | chr3.3:6146449-6146468 | MS.gene51995:intron | 10.0% |
| !!! | ATTTAAAAATAAGTTGAAAA+CGG | - | chr3.3:6145590-6145609 | None:intergenic | 10.0% |
| !!! | TAATAAATATTCACAAATTT+TGG | + | chr3.3:6144229-6144248 | MS.gene51995:intron | 10.0% |
| !!! | TTAATACTACTAATTTATTT+TGG | + | chr3.3:6146345-6146364 | MS.gene51995:intron | 10.0% |
| !! | AAATGTAGAATAAGAAAAAT+AGG | - | chr3.3:6147294-6147313 | None:intergenic | 15.0% |
| !! | AACAATTAAAAACATAATAG+AGG | - | chr3.3:6146701-6146720 | None:intergenic | 15.0% |
| !! | CTAAATATGAAATATTTGAA+TGG | - | chr3.3:6148610-6148629 | None:intergenic | 15.0% |
| !! | TATATATTTCATGTTGAAAA+AGG | + | chr3.3:6146497-6146516 | MS.gene51995:intron | 15.0% |
| !! | TCTAGATATTTATTAAGATT+TGG | + | chr3.3:6147437-6147456 | MS.gene51995:intron | 15.0% |
| !! | TTATGTATAGTATAATGATT+TGG | - | chr3.3:6145140-6145159 | None:intergenic | 15.0% |
| !!! | AATCAAAAGATTCTTTAAAA+TGG | - | chr3.3:6147890-6147909 | None:intergenic | 15.0% |
| !!! | TATGTTAATTTTTCAGATTT+TGG | + | chr3.3:6144348-6144367 | MS.gene51995:intron | 15.0% |
| !! | AAAACACTATATTAAATGTG+TGG | + | chr3.3:6145841-6145860 | MS.gene51995:intron | 20.0% |
| !! | AATATAAGCTTTCATTTCTT+TGG | + | chr3.3:6146283-6146302 | MS.gene51995:intron | 20.0% |
| !! | ACAATTTAATACAGACTTAA+GGG | + | chr3.3:6145056-6145075 | MS.gene51995:intron | 20.0% |
| !! | ATAAAAAGGATACTGAAATA+TGG | - | chr3.3:6146954-6146973 | None:intergenic | 20.0% |
| !! | ATAGCAATTAGATTATAAAG+TGG | - | chr3.3:6148511-6148530 | None:intergenic | 20.0% |
| !! | ATATCCAAATATATTTCCAA+AGG | + | chr3.3:6146620-6146639 | MS.gene51995:CDS | 20.0% |
| !! | ATATGTATAAGTCAAATAGA+AGG | - | chr3.3:6148328-6148347 | None:intergenic | 20.0% |
| !! | ATGTCTTCTTATAATATCAA+TGG | + | chr3.3:6145689-6145708 | MS.gene51995:intron | 20.0% |
| !! | CTTAATATTGTTGAAAAATG+TGG | - | chr3.3:6149096-6149115 | None:intergenic | 20.0% |
| !! | GACATATCATCATAATATTA+AGG | - | chr3.3:6146930-6146949 | None:intergenic | 20.0% |
| !! | GTGAATATTTATTACAAAGA+TGG | - | chr3.3:6144223-6144242 | None:intergenic | 20.0% |
| !! | TATATATCCTCAATATAATC+AGG | + | chr3.3:6145182-6145201 | MS.gene51995:intron | 20.0% |
| !! | TTAGAAATGCTTTCAATATA+TGG | + | chr3.3:6143738-6143757 | MS.gene51995:CDS | 20.0% |
| !! | TTCAAAGAAATGATAAAGAA+AGG | - | chr3.3:6146001-6146020 | None:intergenic | 20.0% |
| !! | TTGAAATTTGTACTTATCAT+TGG | - | chr3.3:6144891-6144910 | None:intergenic | 20.0% |
| !!! | AAAATTGAAGCTTTAGAAAA+TGG | + | chr3.3:6147065-6147084 | MS.gene51995:CDS | 20.0% |
| !!! | AGAAACAATATTTTAAACTG+CGG | - | chr3.3:6149150-6149169 | None:intergenic | 20.0% |
| !!! | CTCATTTTTGTTTTTTAGAT+AGG | + | chr3.3:6144310-6144329 | MS.gene51995:intron | 20.0% |
| !!! | TAACATGAATTTTTCATGTT+AGG | + | chr3.3:6144282-6144301 | MS.gene51995:intron | 20.0% |
| !!! | TATGACTTACTTTTTTTGTT+TGG | + | chr3.3:6148182-6148201 | MS.gene51995:intron | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | + | chr3.3:6143927-6143946 | MS.gene51995:intron | 20.0% |
| !!! | TTAAGTAAGAAAGTATTCAA+TGG | + | chr3.3:6148473-6148492 | MS.gene51995:intron | 20.0% |
| !!! | TTTGAAGATTTTCTCATTAT+GGG | + | chr3.3:6147318-6147337 | MS.gene51995:intron | 20.0% |
| !!! | TTTTGAAGATTTTCTCATTA+TGG | + | chr3.3:6147317-6147336 | MS.gene51995:intron | 20.0% |
| ! | AAACAGAAACATCTTTAAGT+AGG | - | chr3.3:6147226-6147245 | None:intergenic | 25.0% |
| ! | AAATATGCAATGACAAGAAA+TGG | - | chr3.3:6148455-6148474 | None:intergenic | 25.0% |
| ! | AAATGTGAGTAATTAGTGAT+AGG | - | chr3.3:6144013-6144032 | None:intergenic | 25.0% |
| ! | AAGAATAAGCCTATTAATGA+AGG | - | chr3.3:6145920-6145939 | None:intergenic | 25.0% |
| ! | AGTTTGAATCATTACAACAA+TGG | - | chr3.3:6146032-6146051 | None:intergenic | 25.0% |
| ! | ATAATTCCTATTATCACAAC+AGG | - | chr3.3:6145432-6145451 | None:intergenic | 25.0% |
| ! | ATCTGAGTATTTGTCATAAA+AGG | - | chr3.3:6147728-6147747 | None:intergenic | 25.0% |
| ! | ATTTAGGAGATAATTTCTAC+TGG | + | chr3.3:6148059-6148078 | MS.gene51995:intron | 25.0% |
| ! | CAAAATTGTCTTCAATATCA+AGG | + | chr3.3:6144731-6144750 | MS.gene51995:intron | 25.0% |
| ! | CACAATTTAATACAGACTTA+AGG | + | chr3.3:6145055-6145074 | MS.gene51995:intron | 25.0% |
| ! | GAAAGCTTATATTTAGATTG+AGG | - | chr3.3:6146276-6146295 | None:intergenic | 25.0% |
| ! | GTAATACTCTATTCCAAATT+GGG | + | chr3.3:6146519-6146538 | MS.gene51995:intron | 25.0% |
| ! | TACAAAGGGACTTATAAAAA+CGG | + | chr3.3:6146464-6146483 | MS.gene51995:intron | 25.0% |
| ! | TATAACATTGCAGAGTAAAA+AGG | - | chr3.3:6148770-6148789 | None:intergenic | 25.0% |
| ! | TCAAACTATAATCTGATTTC+AGG | + | chr3.3:6146045-6146064 | MS.gene51995:intron | 25.0% |
| ! | TCATAACTTCCTTCATTAAT+AGG | + | chr3.3:6145908-6145927 | MS.gene51995:intron | 25.0% |
| ! | TGTCTTCATCATATATTTGT+AGG | + | chr3.3:6147780-6147799 | MS.gene51995:intron | 25.0% |
| ! | TGTGATTGTGAAAATGTTAT+AGG | + | chr3.3:6145333-6145352 | MS.gene51995:intron | 25.0% |
| ! | TTCAATGTAACTATATGTGT+CGG | - | chr3.3:6143902-6143921 | None:intergenic | 25.0% |
| ! | TTGAAATGCTTAGTCTAATT+AGG | + | chr3.3:6148931-6148950 | MS.gene51995:intron | 25.0% |
| !! | ACTAACTGTTTTCTTTTTGA+TGG | + | chr3.3:6148036-6148055 | MS.gene51995:intron | 25.0% |
| !! | ATATTTGGATATTTCTGTAC+TGG | - | chr3.3:6146612-6146631 | None:intergenic | 25.0% |
| !! | ATTTCAGTATCCTTTTTATG+TGG | + | chr3.3:6146955-6146974 | MS.gene51995:intron | 25.0% |
| !! | GAATCCTTTGGAAATATATT+TGG | - | chr3.3:6146627-6146646 | None:intergenic | 25.0% |
| !! | GTAATTTTCAACACACTATT+TGG | + | chr3.3:6145730-6145749 | MS.gene51995:CDS | 25.0% |
| !! | GTTAATTTGAGCTTATTTAC+TGG | + | chr3.3:6145511-6145530 | MS.gene51995:intron | 25.0% |
| !! | TAAGCACTTTTAATCTAGTT+TGG | + | chr3.3:6145536-6145555 | MS.gene51995:intron | 25.0% |
| !! | TATCCTTTTTATGTGGTTTT+CGG | + | chr3.3:6146962-6146981 | MS.gene51995:intron | 25.0% |
| !! | TTAAGTTGTTGATCCAAAAA+CGG | + | chr3.3:6145661-6145680 | MS.gene51995:intron | 25.0% |
| !! | TTCATTTTCTTTTCCCAATT+TGG | - | chr3.3:6146535-6146554 | None:intergenic | 25.0% |
| !!! | AAGACAATTTTGACTAAATG+CGG | - | chr3.3:6144723-6144742 | None:intergenic | 25.0% |
| !!! | AAGCACTTTTAATCTAGTTT+GGG | + | chr3.3:6145537-6145556 | MS.gene51995:intron | 25.0% |
| !!! | ACTTTTTTTGTTTGGAAAAC+AGG | + | chr3.3:6148190-6148209 | MS.gene51995:intron | 25.0% |
| !!! | GTTTTCTTTTTGATGGATTT+AGG | + | chr3.3:6148043-6148062 | MS.gene51995:intron | 25.0% |
| !!! | TTCTAAAGCTTCAATTTTGT+TGG | - | chr3.3:6147063-6147082 | None:intergenic | 25.0% |
| !!! | TTGTGAATTGTTTTGTATTC+AGG | - | chr3.3:6145040-6145059 | None:intergenic | 25.0% |
| !!! | TTTAGATCATTAGTACTGAT+AGG | - | chr3.3:6146994-6147013 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTGTTTTGTTGAT+AGG | + | chr3.3:6149274-6149293 | MS.gene51995:intron | 25.0% |
| AAACCGAAAACCACATAAAA+AGG | - | chr3.3:6146968-6146987 | None:intergenic | 30.0% | |
| AAATTAGTTGAGTCATACCT+GGG | - | chr3.3:6148878-6148897 | None:intergenic | 30.0% | |
| AACAATGATAGACGACATTA+AGG | - | chr3.3:6147153-6147172 | None:intergenic | 30.0% | |
| AATGTAACAACGTGGTAATA+TGG | + | chr3.3:6149361-6149380 | MS.gene51995:intron | 30.0% | |
| ACAATGATAGACGACATTAA+GGG | - | chr3.3:6147152-6147171 | None:intergenic | 30.0% | |
| ACACCTGAACAAGTTTAATA+TGG | - | chr3.3:6147612-6147631 | None:intergenic | 30.0% | |
| AGCTTCGACATCTATATTAT+GGG | + | chr3.3:6145377-6145396 | MS.gene51995:CDS | 30.0% | |
| AGTGATTAAATGTAACAACG+TGG | + | chr3.3:6149353-6149372 | MS.gene51995:intron | 30.0% | |
| ATAGAAGGTAACGAAATCAA+AGG | - | chr3.3:6148313-6148332 | None:intergenic | 30.0% | |
| ATAGCTGATACAATGAAACA+TGG | - | chr3.3:6146782-6146801 | None:intergenic | 30.0% | |
| ATATATAGTTGCCCTCTTTA+TGG | + | chr3.3:6146885-6146904 | MS.gene51995:intron | 30.0% | |
| ATGAAACATGGTAAGAAGTA+TGG | - | chr3.3:6146770-6146789 | None:intergenic | 30.0% | |
| ATGAAAGCCTCCTAAAAAAT+TGG | + | chr3.3:6147126-6147145 | MS.gene51995:CDS | 30.0% | |
| ATGTGAGATAAAGACATAAC+AGG | - | chr3.3:6144125-6144144 | None:intergenic | 30.0% | |
| ATGTTTCATTGTATCAGCTA+TGG | + | chr3.3:6146781-6146800 | MS.gene51995:CDS | 30.0% | |
| ATTGAGGTAGTACCTAAATT+TGG | - | chr3.3:6146260-6146279 | None:intergenic | 30.0% | |
| ATTTCCATACCTCTATTTCA+TGG | + | chr3.3:6144080-6144099 | MS.gene51995:CDS | 30.0% | |
| CAGGTTAATATAGAGGTAAA+GGG | - | chr3.3:6144838-6144857 | None:intergenic | 30.0% | |
| CTTGATCGATCAATCATAAA+TGG | + | chr3.3:6147553-6147572 | MS.gene51995:intron | 30.0% | |
| GATCAACTTCAGATTAACAA+TGG | - | chr3.3:6145086-6145105 | None:intergenic | 30.0% | |
| GGTAATACTCTATTCCAAAT+TGG | + | chr3.3:6146518-6146537 | MS.gene51995:intron | 30.0% | |
| GGTATTATATTGTTTCAGCT+TGG | + | chr3.3:6147633-6147652 | MS.gene51995:CDS | 30.0% | |
| TAAAACATCTGCATCAACAT+AGG | + | chr3.3:6147010-6147029 | MS.gene51995:intron | 30.0% | |
| TAGAAGGTAACGAAATCAAA+GGG | - | chr3.3:6148312-6148331 | None:intergenic | 30.0% | |
| TAGTTACTTCTGTTTGAACT+TGG | - | chr3.3:6148430-6148449 | None:intergenic | 30.0% | |
| TATGGAAATAGAGATGCTAT+AGG | - | chr3.3:6144069-6144088 | None:intergenic | 30.0% | |
| TATTATCATGAGAATTGTCC+TGG | + | chr3.3:6143671-6143690 | MS.gene51995:CDS | 30.0% | |
| TCAAGCAAAGGAATTGAAAA+AGG | + | chr3.3:6143706-6143725 | MS.gene51995:CDS | 30.0% | |
| TCATGAAAAATTGACATGAG+AGG | + | chr3.3:6144450-6144469 | MS.gene51995:intron | 30.0% | |
| TCCTCAATATAATCAGGTAA+AGG | + | chr3.3:6145188-6145207 | MS.gene51995:intron | 30.0% | |
| TCCTTTACCTGATTATATTG+AGG | - | chr3.3:6145192-6145211 | None:intergenic | 30.0% | |
| TTAGAGCTAAAGCAAAAGAA+AGG | + | chr3.3:6149188-6149207 | MS.gene51995:intron | 30.0% | |
| TTCAATTACGGTCACAAAAT+AGG | - | chr3.3:6144690-6144709 | None:intergenic | 30.0% | |
| TTGAGGTAGTACCTAAATTT+GGG | - | chr3.3:6146259-6146278 | None:intergenic | 30.0% | |
| TTTAGAAAATGGAACCAATG+AGG | + | chr3.3:6147076-6147095 | MS.gene51995:CDS | 30.0% | |
| ! | AATTGACTTTGCTAAAACTC+AGG | + | chr3.3:6147969-6147988 | MS.gene51995:intron | 30.0% |
| ! | ATTTCCAAAGGATTCCTTTT+GGG | + | chr3.3:6146632-6146651 | MS.gene51995:CDS | 30.0% |
| ! | GAACCATATTAAACTTGTTC+AGG | + | chr3.3:6147606-6147625 | MS.gene51995:intron | 30.0% |
| ! | GCTTCTGTATAAAGTTTTTG+AGG | + | chr3.3:6144657-6144676 | MS.gene51995:intron | 30.0% |
| ! | TATTAAACTTGTTCAGGTGT+CGG | + | chr3.3:6147612-6147631 | MS.gene51995:intron | 30.0% |
| ! | TATTTCCAAAGGATTCCTTT+TGG | + | chr3.3:6146631-6146650 | MS.gene51995:CDS | 30.0% |
| ! | TGTTTTTCATTTCTTCCTTC+TGG | + | chr3.3:6146143-6146162 | MS.gene51995:intron | 30.0% |
| !! | AACTTTGGAACTAATGATGT+CGG | + | chr3.3:6147370-6147389 | MS.gene51995:CDS | 30.0% |
| !! | AATATTTTAAACTGCGGTAG+CGG | - | chr3.3:6149144-6149163 | None:intergenic | 30.0% |
| !! | ATTTTTCAGATTTTGGACTG+TGG | + | chr3.3:6144355-6144374 | MS.gene51995:intron | 30.0% |
| !! | CTTATTTTTCTCATCCTCAT+TGG | - | chr3.3:6147093-6147112 | None:intergenic | 30.0% |
| !! | GATTTGGTGTATTTCATAAC+AGG | - | chr3.3:6145124-6145143 | None:intergenic | 30.0% |
| !! | GTTTTGAATGATACCTTCAT+TGG | - | chr3.3:6145826-6145845 | None:intergenic | 30.0% |
| !! | TGACTCAACTAATTTGTTTG+AGG | + | chr3.3:6148883-6148902 | MS.gene51995:intron | 30.0% |
| !!! | ACATTAAGGGCCAATTTTTT+AGG | - | chr3.3:6147139-6147158 | None:intergenic | 30.0% |
| !!! | TTTTTCTTTTGAGATGCACT+AGG | + | chr3.3:6145487-6145506 | MS.gene51995:intron | 30.0% |
| !!! | TTTTTTGATGAATGCTTCTG+AGG | - | chr3.3:6144981-6145000 | None:intergenic | 30.0% |
| AAACAGGATCAACATCAAAG+AGG | + | chr3.3:6148206-6148225 | MS.gene51995:intron | 35.0% | |
| AACAGGATCAACATCAAAGA+GGG | + | chr3.3:6148207-6148226 | MS.gene51995:intron | 35.0% | |
| ACACTAACACTTCAGATTGA+AGG | + | chr3.3:6148534-6148553 | MS.gene51995:intron | 35.0% | |
| AGAAGAAGAAAGAACTCTCT+CGG | - | chr3.3:6144544-6144563 | None:intergenic | 35.0% | |
| AGAGAAGAATACCATGCTTT+AGG | + | chr3.3:6145951-6145970 | MS.gene51995:CDS | 35.0% | |
| ATCCACTTACTTATCCCAAA+AGG | - | chr3.3:6146649-6146668 | None:intergenic | 35.0% | |
| ATTAGTGTCTTATCCACTCA+TGG | + | chr3.3:6148959-6148978 | MS.gene51995:intron | 35.0% | |
| CAAATTAGTTGAGTCATACC+TGG | - | chr3.3:6148879-6148898 | None:intergenic | 35.0% | |
| CCTCTTGAAAAAGTTCTGTA+TGG | + | chr3.3:6148144-6148163 | MS.gene51995:intron | 35.0% | |
| CGAAAACCTGTTGTGATAAT+AGG | + | chr3.3:6145423-6145442 | MS.gene51995:CDS | 35.0% | |
| CTACAGAGTCATTAGAGTTA+AGG | + | chr3.3:6149445-6149464 | MS.gene51995:intron | 35.0% | |
| CTATGTGACAATGTAGAGTT+CGG | - | chr3.3:6149307-6149326 | None:intergenic | 35.0% | |
| GAACCAAAAATTGAAACCGT+AGG | - | chr3.3:6149034-6149053 | None:intergenic | 35.0% | |
| GAATTCAACAAGATACCTAC+CGG | - | chr3.3:6146839-6146858 | None:intergenic | 35.0% | |
| GAGCTTCGACATCTATATTA+TGG | + | chr3.3:6145376-6145395 | MS.gene51995:CDS | 35.0% | |
| GCAGGTTAATATAGAGGTAA+AGG | - | chr3.3:6144839-6144858 | None:intergenic | 35.0% | |
| GCTTCGACATCTATATTATG+GGG | + | chr3.3:6145378-6145397 | MS.gene51995:CDS | 35.0% | |
| GTGATAGGAACTATGAAACA+CGG | - | chr3.3:6143998-6144017 | None:intergenic | 35.0% | |
| TATCACTCACCATGAAATAG+AGG | - | chr3.3:6144092-6144111 | None:intergenic | 35.0% | |
| TATCATTCCTTGGCGATAAA+GGG | - | chr3.3:6147482-6147501 | None:intergenic | 35.0% | |
| TCTCAAATTATTAGCGGTGT+CGG | + | chr3.3:6143933-6143952 | MS.gene51995:intron | 35.0% | |
| TCTGTACAACACACATGTTA+AGG | - | chr3.3:6148353-6148372 | None:intergenic | 35.0% | |
| TGCAGTTGTAGCTTAATCAA+TGG | + | chr3.3:6149059-6149078 | MS.gene51995:intron | 35.0% | |
| TGTAAGTACATATGCAACTG+AGG | + | chr3.3:6145457-6145476 | MS.gene51995:intron | 35.0% | |
| TGTTCCTATCATAAGAAGCA+CGG | + | chr3.3:6143841-6143860 | MS.gene51995:intron | 35.0% | |
| TTATCCCAAAAGGAATCCTT+TGG | - | chr3.3:6146639-6146658 | None:intergenic | 35.0% | |
| TTCATCCATAACTTCTTCAC+AGG | - | chr3.3:6144861-6144880 | None:intergenic | 35.0% | |
| TTCGTTCTTGGAGGTTTAAA+TGG | + | chr3.3:6145790-6145809 | MS.gene51995:CDS | 35.0% | |
| TTTGCTAAAACTCAGGAGAT+CGG | + | chr3.3:6147976-6147995 | MS.gene51995:intron | 35.0% | |
| TTTGTGCTCAATGCTATTGA+AGG | + | chr3.3:6149544-6149563 | MS.gene51995:CDS | 35.0% | |
| ! | AACGTCGTGGATTTTTAACA+TGG | + | chr3.3:6146183-6146202 | MS.gene51995:intron | 35.0% |
| ! | ACCTGCACATAAACTTTTAC+GGG | + | chr3.3:6147504-6147523 | MS.gene51995:intron | 35.0% |
| ! | ACTTTTGAACATTCAACTGC+AGG | + | chr3.3:6149505-6149524 | MS.gene51995:intron | 35.0% |
| ! | CACCTGCACATAAACTTTTA+CGG | + | chr3.3:6147503-6147522 | MS.gene51995:intron | 35.0% |
| ! | CTGAACTGTTTTATACCAGA+AGG | - | chr3.3:6146161-6146180 | None:intergenic | 35.0% |
| ! | GGTTTTCTTTCAATCAGGAA+TGG | - | chr3.3:6149595-6149614 | None:intergenic | 35.0% |
| ! | TCATTACAACAATGGTGATG+TGG | - | chr3.3:6146024-6146043 | None:intergenic | 35.0% |
| ! | TGACCTACGGTTTCAATTTT+TGG | + | chr3.3:6149028-6149047 | MS.gene51995:intron | 35.0% |
| ! | TTAGGAGGCTTTCATCTTTT+TGG | - | chr3.3:6147121-6147140 | None:intergenic | 35.0% |
| ! | TTCAGATTGAAGGTGTGTTT+GGG | + | chr3.3:6148544-6148563 | MS.gene51995:intron | 35.0% |
| !! | CTCAACTAATTTGTTTGAGG+AGG | + | chr3.3:6148886-6148905 | MS.gene51995:intron | 35.0% |
| !! | TCATGATATTGCTTTTGCAG+AGG | + | chr3.3:6147190-6147209 | MS.gene51995:CDS | 35.0% |
| !!! | CCATACAGAACTTTTTCAAG+AGG | - | chr3.3:6148147-6148166 | None:intergenic | 35.0% |
| !!! | TTAAGGGCCAATTTTTTAGG+AGG | - | chr3.3:6147136-6147155 | None:intergenic | 35.0% |
| !!! | TTCCTTTTGGGATAAGTAAG+TGG | + | chr3.3:6146644-6146663 | MS.gene51995:intron | 35.0% |
| AAACAGTTCAGAAAACGTCG+TGG | + | chr3.3:6146170-6146189 | MS.gene51995:intron | 40.0% | |
| AACTTGGTCACAAAAGAGGA+TGG | + | chr3.3:6148839-6148858 | MS.gene51995:CDS | 40.0% | |
| AAGTACATATGCAACTGAGG+TGG | + | chr3.3:6145460-6145479 | MS.gene51995:intron | 40.0% | |
| ACAACGTGGTAATATGGTGT+CGG | + | chr3.3:6149367-6149386 | MS.gene51995:intron | 40.0% | |
| ACAGGATCAACATCAAAGAG+GGG | + | chr3.3:6148208-6148227 | MS.gene51995:intron | 40.0% | |
| ACATGAAACGTATCGCAAGT+AGG | - | chr3.3:6144431-6144450 | None:intergenic | 40.0% | |
| ACCCGTAAAAGTTTATGTGC+AGG | - | chr3.3:6147508-6147527 | None:intergenic | 40.0% | |
| AGCACAAAGAAAACCAGATG+GGG | - | chr3.3:6149532-6149551 | None:intergenic | 40.0% | |
| ATGTCAGCTTGCAAGGTAAT+TGG | + | chr3.3:6148257-6148276 | MS.gene51995:CDS | 40.0% | |
| ATTTGGGAACACAGATGGAA+TGG | - | chr3.3:6146243-6146262 | None:intergenic | 40.0% | |
| CAACCAGTGCAAAAAATCTG+TGG | + | chr3.3:6147663-6147682 | MS.gene51995:CDS | 40.0% | |
| CAGTTGATTGTCCTAAAGCA+TGG | - | chr3.3:6145965-6145984 | None:intergenic | 40.0% | |
| CATTCTGCAGAATAAAGCAG+TGG | + | chr3.3:6148088-6148107 | MS.gene51995:CDS | 40.0% | |
| CCACTCATGGTATGTTCATT+AGG | + | chr3.3:6148972-6148991 | MS.gene51995:intron | 40.0% | |
| CCATCCAAAAACTTGTGCAA+AGG | - | chr3.3:6145756-6145775 | None:intergenic | 40.0% | |
| CCATCTGTGTTCCCAAATTT+AGG | + | chr3.3:6146245-6146264 | MS.gene51995:intron | 40.0% | |
| CCTAAATTTGGGAACACAGA+TGG | - | chr3.3:6146248-6146267 | None:intergenic | 40.0% | |
| CCTAATGAACATACCATGAG+TGG | - | chr3.3:6148975-6148994 | None:intergenic | 40.0% | |
| CGATAAAGGGTTATGAAGGA+AGG | - | chr3.3:6147469-6147488 | None:intergenic | 40.0% | |
| CGATATGTACAGTGTAAAGC+CGG | - | chr3.3:6147854-6147873 | None:intergenic | 40.0% | |
| CTATCATTCCTTGGCGATAA+AGG | - | chr3.3:6147483-6147502 | None:intergenic | 40.0% | |
| CTCACCATGAAATAGAGGTA+TGG | - | chr3.3:6144087-6144106 | None:intergenic | 40.0% | |
| GAAGATATCAGTTCCTATGC+TGG | + | chr3.3:6145234-6145253 | MS.gene51995:CDS | 40.0% | |
| GACTATGAAACACTGACACA+AGG | - | chr3.3:6148663-6148682 | None:intergenic | 40.0% | |
| GAGCACAAAGAAAACCAGAT+GGG | - | chr3.3:6149533-6149552 | None:intergenic | 40.0% | |
| GCATTGAAACCTTCGATTGA+AGG | - | chr3.3:6149411-6149430 | None:intergenic | 40.0% | |
| GGACTTATAAAAACGGACGA+AGG | + | chr3.3:6146471-6146490 | MS.gene51995:intron | 40.0% | |
| GGCTGATGCAACTTCAATTA+CGG | - | chr3.3:6144702-6144721 | None:intergenic | 40.0% | |
| GGTAGTATTCTTGCAGTATC+AGG | + | chr3.3:6147391-6147410 | MS.gene51995:CDS | 40.0% | |
| GTATTCAGGAATAACAGCGA+AGG | - | chr3.3:6145026-6145045 | None:intergenic | 40.0% | |
| GTTACGATGAGATTCGTTCT+TGG | + | chr3.3:6145778-6145797 | MS.gene51995:CDS | 40.0% | |
| TCAAAACTTAACATCCCTCC+AGG | + | chr3.3:6146741-6146760 | MS.gene51995:intron | 40.0% | |
| TCACAGGCAGGTTAATATAG+AGG | - | chr3.3:6144845-6144864 | None:intergenic | 40.0% | |
| TGAGAATTGTCCTGGTTGTA+AGG | + | chr3.3:6143679-6143698 | MS.gene51995:CDS | 40.0% | |
| TGAGCACAAAGAAAACCAGA+TGG | - | chr3.3:6149534-6149553 | None:intergenic | 40.0% | |
| TTCATAACCCTTTATCGCCA+AGG | + | chr3.3:6147472-6147491 | MS.gene51995:intron | 40.0% | |
| TTGCTAACTGCAGCTTAACT+TGG | + | chr3.3:6148823-6148842 | MS.gene51995:intron | 40.0% | |
| TTGGCGATAAAGGGTTATGA+AGG | - | chr3.3:6147473-6147492 | None:intergenic | 40.0% | |
| TTGTAAGGTGGATCAAGCAA+AGG | + | chr3.3:6143694-6143713 | MS.gene51995:CDS | 40.0% | |
| TTGTAGCGATTTCCTGCATT+TGG | + | chr3.3:6146810-6146829 | MS.gene51995:CDS | 40.0% | |
| ! | AAGAAGTATGGAAACCTGGA+GGG | - | chr3.3:6146758-6146777 | None:intergenic | 40.0% |
| ! | CTTCAGATTGAAGGTGTGTT+TGG | + | chr3.3:6148543-6148562 | MS.gene51995:intron | 40.0% |
| ! | GCTTAACTTGGTCACAAAAG+AGG | + | chr3.3:6148835-6148854 | MS.gene51995:intron | 40.0% |
| ! | GTAACTATATGTGTCGGTGT+CGG | - | chr3.3:6143896-6143915 | None:intergenic | 40.0% |
| ! | TAAGAAGTATGGAAACCTGG+AGG | - | chr3.3:6146759-6146778 | None:intergenic | 40.0% |
| ! | TCAGATTGAAGGTGTGTTTG+GGG | + | chr3.3:6148545-6148564 | MS.gene51995:intron | 40.0% |
| ! | TGGTAAGAAGTATGGAAACC+TGG | - | chr3.3:6146762-6146781 | None:intergenic | 40.0% |
| !! | CCTTTGCACAAGTTTTTGGA+TGG | + | chr3.3:6145753-6145772 | MS.gene51995:CDS | 40.0% |
| !! | GAAGACATTGAAGCCGTTTT+TGG | - | chr3.3:6145677-6145696 | None:intergenic | 40.0% |
| !! | GGAGGTTTAAATGGTTTGCT+TGG | + | chr3.3:6145799-6145818 | MS.gene51995:CDS | 40.0% |
| !! | TTGGCCTTTGCACAAGTTTT+TGG | + | chr3.3:6145749-6145768 | MS.gene51995:CDS | 40.0% |
| AACTGCTATGTCAGCTTGCA+AGG | + | chr3.3:6148250-6148269 | MS.gene51995:CDS | 45.0% | |
| AAGGGGAAGCTTTGCAAGAT+TGG | - | chr3.3:6147817-6147836 | None:intergenic | 45.0% | |
| ACCTGCCTGTGAAGAAGTTA+TGG | + | chr3.3:6144853-6144872 | MS.gene51995:intron | 45.0% | |
| ACGATGAGATTCGTTCTTGG+AGG | + | chr3.3:6145781-6145800 | MS.gene51995:CDS | 45.0% | |
| ACTGCTGAAGACAGTAGAAC+AGG | - | chr3.3:6149250-6149269 | None:intergenic | 45.0% | |
| AGAAGTCGCACTCCATAAAG+AGG | - | chr3.3:6146900-6146919 | None:intergenic | 45.0% | |
| AGGGGAAGCTTTGCAAGATT+GGG | - | chr3.3:6147816-6147835 | None:intergenic | 45.0% | |
| AGGTTAGGCGGTTTGAACTT+TGG | + | chr3.3:6147355-6147374 | MS.gene51995:CDS | 45.0% | |
| ATAGGATCTGCCTACATGCT+TGG | + | chr3.3:6145351-6145370 | MS.gene51995:intron | 45.0% | |
| CAGCTAGATTGATGAGCTGA+GGG | - | chr3.3:6144408-6144427 | None:intergenic | 45.0% | |
| CATCAAAGAGGGGTAGCAAA+TGG | + | chr3.3:6148218-6148237 | MS.gene51995:CDS | 45.0% | |
| CCCTTCATGACAATGTTGTC+CGG | + | chr3.3:6147832-6147851 | MS.gene51995:CDS | 45.0% | |
| CCGGACAACATTGTCATGAA+GGG | - | chr3.3:6147835-6147854 | None:intergenic | 45.0% | |
| CGGACAACATTGTCATGAAG+GGG | - | chr3.3:6147834-6147853 | None:intergenic | 45.0% | |
| CTATGAAACACGGATACGCA+CGG | - | chr3.3:6143988-6144007 | None:intergenic | 45.0% | |
| CTTACCTACGTAACCAGCAT+AGG | - | chr3.3:6145250-6145269 | None:intergenic | 45.0% | |
| GAAGCTTTGCAAGATTGGGA+TGG | - | chr3.3:6147812-6147831 | None:intergenic | 45.0% | |
| GAAGTCGCACTCCATAAAGA+GGG | - | chr3.3:6146899-6146918 | None:intergenic | 45.0% | |
| GAATTGTCCTGGTTGTAAGG+TGG | + | chr3.3:6143682-6143701 | MS.gene51995:CDS | 45.0% | |
| GAGCGATATTGAGGTCGAAA+AGG | + | chr3.3:6147941-6147960 | MS.gene51995:intron | 45.0% | |
| GATTTCCTGCATTTGGCTAC+CGG | + | chr3.3:6146817-6146836 | MS.gene51995:CDS | 45.0% | |
| GCACAAAGAAAACCAGATGG+GGG | - | chr3.3:6149531-6149550 | None:intergenic | 45.0% | |
| GTGTCCGTGCTTCTTATGAT+AGG | - | chr3.3:6143848-6143867 | None:intergenic | 45.0% | |
| TCCATAACTTCTTCACAGGC+AGG | - | chr3.3:6144857-6144876 | None:intergenic | 45.0% | |
| TCCTTGTATTAGGCATGTCC+CGG | + | chr3.3:6143868-6143887 | MS.gene51995:intron | 45.0% | |
| TCTCTCTCTCTCTTTCGAAG+AGG | - | chr3.3:6144489-6144508 | None:intergenic | 45.0% | |
| TGTTCTACTGTCTTCAGCAG+TGG | + | chr3.3:6149249-6149268 | MS.gene51995:intron | 45.0% | |
| TTAGTTGAGTCATACCTGGG+AGG | - | chr3.3:6148875-6148894 | None:intergenic | 45.0% | |
| ! | AGGGGGGTTTTCTTTCAATC+AGG | - | chr3.3:6149600-6149619 | None:intergenic | 45.0% |
| ! | AGGTTTTCGACCATAGCGAT+CGG | - | chr3.3:6145412-6145431 | None:intergenic | 45.0% |
| ! | AGTTCCTATGCTGGTTACGT+AGG | + | chr3.3:6145243-6145262 | MS.gene51995:CDS | 45.0% |
| ! | ATTGAAGGCATGCCATGTGT+CGG | - | chr3.3:6149396-6149415 | None:intergenic | 45.0% |
| ! | CCTCGTCTTTTCTTGACCTA+CGG | + | chr3.3:6149015-6149034 | MS.gene51995:intron | 45.0% |
| ! | CTGTCTTCAGCAGTGGTTTT+TGG | + | chr3.3:6149256-6149275 | MS.gene51995:intron | 45.0% |
| !! | ACGTCGAAGGAGTACTAACT+AGG | - | chr3.3:6144385-6144404 | None:intergenic | 45.0% |
| !! | ATTTCAGGTTGCAGCTGCTT+GGG | + | chr3.3:6146060-6146079 | MS.gene51995:intron | 45.0% |
| !! | TGGTTTGCTTGGACCAATGA+AGG | + | chr3.3:6145810-6145829 | MS.gene51995:CDS | 45.0% |
| !!! | GGTCCACAGATTTTTTGCAC+TGG | - | chr3.3:6147669-6147688 | None:intergenic | 45.0% |
| AAGGTAATTGGTCCAGCAGG+AGG | + | chr3.3:6148269-6148288 | MS.gene51995:CDS | 50.0% | |
| ACCGGGACATGCCTAATACA+AGG | - | chr3.3:6143872-6143891 | None:intergenic | 50.0% | |
| AGCGATAGTGTGTGTCTGCA+TGG | + | chr3.3:6144615-6144634 | MS.gene51995:intron | 50.0% | |
| ATCGTTCTTGCTCGCATTGC+AGG | + | chr3.3:6147690-6147709 | MS.gene51995:CDS | 50.0% | |
| ATGGATGCTTCTTTCCTCCC+AGG | + | chr3.3:6148858-6148877 | MS.gene51995:CDS | 50.0% | |
| CATGGCATGCCTTCAATCGA+AGG | + | chr3.3:6149399-6149418 | MS.gene51995:intron | 50.0% | |
| CCGTAGGTCAAGAAAAGACG+AGG | - | chr3.3:6149018-6149037 | None:intergenic | 50.0% | |
| CGAAGCTCTACCAAGCATGT+AGG | - | chr3.3:6145364-6145383 | None:intergenic | 50.0% | |
| CTCTCTCGGAGAAGAAGAAG+AGG | - | chr3.3:6144530-6144549 | None:intergenic | 50.0% | |
| GAAAGTCCTCGAAGGTTAGG+CGG | + | chr3.3:6147343-6147362 | MS.gene51995:CDS | 50.0% | |
| GCAATGCGAGCAAGAACGAT+AGG | - | chr3.3:6147690-6147709 | None:intergenic | 50.0% | |
| GCACGGACACTCCTTGTATT+AGG | + | chr3.3:6143858-6143877 | MS.gene51995:intron | 50.0% | |
| GCAGCTAGATTGATGAGCTG+AGG | - | chr3.3:6144409-6144428 | None:intergenic | 50.0% | |
| GCCGGACAACATTGTCATGA+AGG | - | chr3.3:6147836-6147855 | None:intergenic | 50.0% | |
| GCTGAAAGTCCTCGAAGGTT+AGG | + | chr3.3:6147340-6147359 | MS.gene51995:CDS | 50.0% | |
| GCTTGATCCACCTTACAACC+AGG | - | chr3.3:6143692-6143711 | None:intergenic | 50.0% | |
| GGAATGATAGCCGATCGCTA+TGG | + | chr3.3:6145399-6145418 | MS.gene51995:CDS | 50.0% | |
| TCGACCTCAATATCGCTCGT+TGG | - | chr3.3:6147939-6147958 | None:intergenic | 50.0% | |
| TCGTTCTTGCTCGCATTGCA+GGG | + | chr3.3:6147691-6147710 | MS.gene51995:CDS | 50.0% | |
| TGCAAGGTAATTGGTCCAGC+AGG | + | chr3.3:6148266-6148285 | MS.gene51995:CDS | 50.0% | |
| TGTGTCTGCATGGCTCAGTT+TGG | + | chr3.3:6144625-6144644 | MS.gene51995:intron | 50.0% | |
| TTCAAACCGCCTAACCTTCG+AGG | - | chr3.3:6147352-6147371 | None:intergenic | 50.0% | |
| ! | ACCAGCGTTGGGAGGTTATT+TGG | + | chr3.3:6146102-6146121 | MS.gene51995:CDS | 50.0% |
| ! | CGGGTTGACATGACGCTATT+TGG | + | chr3.3:6147523-6147542 | MS.gene51995:intron | 50.0% |
| ! | GGGTCAGTTAGTGTCACTGT+CGG | - | chr3.3:6148589-6148608 | None:intergenic | 50.0% |
| ! | GTGCAGGTGCTATCATTCCT+TGG | - | chr3.3:6147492-6147511 | None:intergenic | 50.0% |
| ! | GTTGGGAGGTTATTTGGCTC+AGG | + | chr3.3:6146108-6146127 | MS.gene51995:CDS | 50.0% |
| ! | TATGGGCTGAAAGTCCTCGA+AGG | + | chr3.3:6147335-6147354 | MS.gene51995:CDS | 50.0% |
| ! | TGGGGAGTAGGTTTGGTCTT+CGG | + | chr3.3:6146079-6146098 | MS.gene51995:CDS | 50.0% |
| !! | AGGCATTGACACATCGACAC+TGG | - | chr3.3:6148643-6148662 | None:intergenic | 50.0% |
| !! | GATTTCAGGTTGCAGCTGCT+TGG | + | chr3.3:6146059-6146078 | MS.gene51995:intron | 50.0% |
| !! | TCAGTGAAACTGCTCTGAGG+GGG | - | chr3.3:6149617-6149636 | None:intergenic | 50.0% |
| !! | TTTCAGGTTGCAGCTGCTTG+GGG | + | chr3.3:6146061-6146080 | MS.gene51995:intron | 50.0% |
| ACCTACCGGTAGCCAAATGC+AGG | - | chr3.3:6146825-6146844 | None:intergenic | 55.0% | |
| AGCTGCTTGGGGAGTAGGTT+TGG | + | chr3.3:6146072-6146091 | MS.gene51995:CDS | 55.0% | |
| CGTTCTTGCTCGCATTGCAG+GGG | + | chr3.3:6147692-6147711 | MS.gene51995:CDS | 55.0% | |
| GCCAAATAACCTCCCAACGC+TGG | - | chr3.3:6146106-6146125 | None:intergenic | 55.0% | |
| GTAATTGGTCCAGCAGGAGG+CGG | + | chr3.3:6148272-6148291 | MS.gene51995:CDS | 55.0% | |
| GTCAGTGTCCGAGTCGTGTT+CGG | + | chr3.3:6143959-6143978 | MS.gene51995:intron | 55.0% | |
| TCCTGCATTTGGCTACCGGT+AGG | + | chr3.3:6146821-6146840 | MS.gene51995:intron | 55.0% | |
| ! | TTGGTCTTCGGACCAGCGTT+GGG | + | chr3.3:6146091-6146110 | MS.gene51995:CDS | 55.0% |
| ! | TTTGGTCTTCGGACCAGCGT+TGG | + | chr3.3:6146090-6146109 | MS.gene51995:CDS | 55.0% |
| !! | ATATGTGTCGGTGTCGGCAC+CGG | - | chr3.3:6143890-6143909 | None:intergenic | 55.0% |
| !! | CAGTGAAACTGCTCTGAGGG+GGG | - | chr3.3:6149616-6149635 | None:intergenic | 55.0% |
| CACGGACACCGAACACGACT+CGG | - | chr3.3:6143970-6143989 | None:intergenic | 60.0% | |
| GATGAGCTGAGGGACGTCGA+AGG | - | chr3.3:6144398-6144417 | None:intergenic | 60.0% | |
| GTTGCAGCTGCTTGGGGAGT+AGG | + | chr3.3:6146067-6146086 | MS.gene51995:CDS | 60.0% | |
| TTCAACTGCAGGCCCCCATC+TGG | + | chr3.3:6149516-6149535 | MS.gene51995:intron | 60.0% | |
| !! | TATGTGTCGGTGTCGGCACC+GGG | - | chr3.3:6143889-6143908 | None:intergenic | 60.0% |
| !! | TGGTGTCGGTGTCCGACACA+TGG | + | chr3.3:6149381-6149400 | MS.gene51995:intron | 60.0% |
| TACATTGCGCCGCCTCCTGC+TGG | - | chr3.3:6148284-6148303 | None:intergenic | 65.0% | |
| ! | GTCTTCGGACCAGCGTTGGG+AGG | + | chr3.3:6146094-6146113 | MS.gene51995:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 6143635 | 6149636 | 6143635 | ID=MS.gene51995 |
| chr3.3 | mRNA | 6143635 | 6149636 | 6143635 | ID=MS.gene51995.t1;Parent=MS.gene51995 |
| chr3.3 | exon | 6143635 | 6143779 | 6143635 | ID=MS.gene51995.t1.exon1;Parent=MS.gene51995.t1 |
| chr3.3 | CDS | 6143635 | 6143779 | 6143635 | ID=cds.MS.gene51995.t1;Parent=MS.gene51995.t1 |
| chr3.3 | exon | 6144061 | 6144101 | 6144061 | ID=MS.gene51995.t1.exon2;Parent=MS.gene51995.t1 |
| chr3.3 | CDS | 6144061 | 6144101 | 6144061 | ID=cds.MS.gene51995.t1;Parent=MS.gene51995.t1 |
| chr3.3 | exon | 6145204 | 6145264 | 6145204 | ID=MS.gene51995.t1.exon3;Parent=MS.gene51995.t1 |
| chr3.3 | CDS | 6145204 | 6145264 | 6145204 | ID=cds.MS.gene51995.t1;Parent=MS.gene51995.t1 |
| chr3.3 | exon | 6145355 | 6145457 | 6145355 | ID=MS.gene51995.t1.exon4;Parent=MS.gene51995.t1 |
| chr3.3 | CDS | 6145355 | 6145457 | 6145355 | ID=cds.MS.gene51995.t1;Parent=MS.gene51995.t1 |
| chr3.3 | exon | 6145729 | 6145831 | 6145729 | ID=MS.gene51995.t1.exon5;Parent=MS.gene51995.t1 |
| chr3.3 | CDS | 6145729 | 6145831 | 6145729 | ID=cds.MS.gene51995.t1;Parent=MS.gene51995.t1 |
| chr3.3 | exon | 6145930 | 6145983 | 6145930 | ID=MS.gene51995.t1.exon6;Parent=MS.gene51995.t1 |
| chr3.3 | CDS | 6145930 | 6145983 | 6145930 | ID=cds.MS.gene51995.t1;Parent=MS.gene51995.t1 |
| chr3.3 | exon | 6146067 | 6146129 | 6146067 | ID=MS.gene51995.t1.exon7;Parent=MS.gene51995.t1 |
| chr3.3 | CDS | 6146067 | 6146129 | 6146067 | ID=cds.MS.gene51995.t1;Parent=MS.gene51995.t1 |
| chr3.3 | exon | 6146609 | 6146658 | 6146609 | ID=MS.gene51995.t1.exon8;Parent=MS.gene51995.t1 |
| chr3.3 | CDS | 6146609 | 6146658 | 6146609 | ID=cds.MS.gene51995.t1;Parent=MS.gene51995.t1 |
| chr3.3 | exon | 6146763 | 6146838 | 6146763 | ID=MS.gene51995.t1.exon9;Parent=MS.gene51995.t1 |
| chr3.3 | CDS | 6146763 | 6146838 | 6146763 | ID=cds.MS.gene51995.t1;Parent=MS.gene51995.t1 |
| chr3.3 | exon | 6147032 | 6147211 | 6147032 | ID=MS.gene51995.t1.exon10;Parent=MS.gene51995.t1 |
| chr3.3 | CDS | 6147032 | 6147211 | 6147032 | ID=cds.MS.gene51995.t1;Parent=MS.gene51995.t1 |
| chr3.3 | exon | 6147325 | 6147412 | 6147325 | ID=MS.gene51995.t1.exon11;Parent=MS.gene51995.t1 |
| chr3.3 | CDS | 6147325 | 6147412 | 6147325 | ID=cds.MS.gene51995.t1;Parent=MS.gene51995.t1 |
| chr3.3 | exon | 6147628 | 6147713 | 6147628 | ID=MS.gene51995.t1.exon12;Parent=MS.gene51995.t1 |
| chr3.3 | CDS | 6147628 | 6147713 | 6147628 | ID=cds.MS.gene51995.t1;Parent=MS.gene51995.t1 |
| chr3.3 | exon | 6147802 | 6147909 | 6147802 | ID=MS.gene51995.t1.exon13;Parent=MS.gene51995.t1 |
| chr3.3 | CDS | 6147802 | 6147909 | 6147802 | ID=cds.MS.gene51995.t1;Parent=MS.gene51995.t1 |
| chr3.3 | exon | 6148065 | 6148109 | 6148065 | ID=MS.gene51995.t1.exon14;Parent=MS.gene51995.t1 |
| chr3.3 | CDS | 6148065 | 6148109 | 6148065 | ID=cds.MS.gene51995.t1;Parent=MS.gene51995.t1 |
| chr3.3 | exon | 6148212 | 6148300 | 6148212 | ID=MS.gene51995.t1.exon15;Parent=MS.gene51995.t1 |
| chr3.3 | CDS | 6148212 | 6148300 | 6148212 | ID=cds.MS.gene51995.t1;Parent=MS.gene51995.t1 |
| chr3.3 | exon | 6148836 | 6148879 | 6148836 | ID=MS.gene51995.t1.exon16;Parent=MS.gene51995.t1 |
| chr3.3 | CDS | 6148836 | 6148879 | 6148836 | ID=cds.MS.gene51995.t1;Parent=MS.gene51995.t1 |
| chr3.3 | exon | 6149527 | 6149636 | 6149527 | ID=MS.gene51995.t1.exon17;Parent=MS.gene51995.t1 |
| chr3.3 | CDS | 6149527 | 6149636 | 6149527 | ID=cds.MS.gene51995.t1;Parent=MS.gene51995.t1 |
| Gene Sequence |
| Protein sequence |
