Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52072.t1 | XP_013456479.1 | 87.9 | 348 | 7 | 2 | 1 | 317 | 1 | 344 | 1.60E-165 | 592 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52072.t1 | A0A1P8B554 | 68.7 | 249 | 67 | 4 | 6 | 243 | 11 | 259 | 4.1e-93 | 342.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52072.t1 | A0A072UXB7 | 87.9 | 348 | 7 | 2 | 1 | 317 | 1 | 344 | 1.1e-165 | 592.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene52072 | 0.834086 | 3.67E-56 | -1.69E-46 |
| MS.gene050707 | MS.gene52072 | 0.841217 | 5.43E-58 | -1.69E-46 |
| MS.gene052209 | MS.gene52072 | 0.813999 | 1.93E-51 | -1.69E-46 |
| MS.gene052308 | MS.gene52072 | 0.853138 | 2.91E-61 | -1.69E-46 |
| MS.gene053348 | MS.gene52072 | 0.824725 | 6.91E-54 | -1.69E-46 |
| MS.gene054551 | MS.gene52072 | 0.818883 | 1.55E-52 | -1.69E-46 |
| MS.gene054593 | MS.gene52072 | 0.840989 | 6.24E-58 | -1.69E-46 |
| MS.gene054850 | MS.gene52072 | 0.843028 | 1.80E-58 | -1.69E-46 |
| MS.gene054941 | MS.gene52072 | 0.827744 | 1.32E-54 | -1.69E-46 |
| MS.gene055308 | MS.gene52072 | 0.848096 | 7.62E-60 | -1.69E-46 |
| MS.gene055578 | MS.gene52072 | 0.817584 | 3.06E-52 | -1.69E-46 |
| MS.gene056041 | MS.gene52072 | 0.844821 | 5.96E-59 | -1.69E-46 |
| MS.gene05640 | MS.gene52072 | 0.833719 | 4.54E-56 | -1.69E-46 |
| MS.gene056528 | MS.gene52072 | 0.827065 | 1.92E-54 | -1.69E-46 |
| MS.gene05652 | MS.gene52072 | 0.876036 | 1.92E-68 | -1.69E-46 |
| MS.gene057669 | MS.gene52072 | 0.875961 | 2.04E-68 | -1.69E-46 |
| MS.gene057701 | MS.gene52072 | 0.864114 | 1.53E-64 | -1.69E-46 |
| MS.gene058128 | MS.gene52072 | 0.87483 | 4.97E-68 | -1.69E-46 |
| MS.gene058853 | MS.gene52072 | 0.867103 | 1.75E-65 | -1.69E-46 |
| MS.gene059616 | MS.gene52072 | 0.864732 | 9.84E-65 | -1.69E-46 |
| MS.gene059905 | MS.gene52072 | 0.812529 | 4.05E-51 | -1.69E-46 |
| MS.gene06093 | MS.gene52072 | 0.803511 | 3.37E-49 | -1.69E-46 |
| MS.gene061099 | MS.gene52072 | 0.81822 | 2.20E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52072.t1 | MTR_4g073720 | 87.931 | 348 | 7 | 2 | 1 | 317 | 1 | 344 | 0.0 | 593 |
| MS.gene52072.t1 | MTR_5g022350 | 57.778 | 315 | 111 | 7 | 11 | 316 | 15 | 316 | 4.23e-120 | 348 |
| MS.gene52072.t1 | MTR_8g075510 | 69.787 | 235 | 65 | 3 | 14 | 245 | 18 | 249 | 1.30e-115 | 334 |
| MS.gene52072.t1 | MTR_8g075510 | 59.076 | 303 | 98 | 5 | 14 | 313 | 18 | 297 | 9.97e-115 | 334 |
| MS.gene52072.t1 | MTR_1g025420 | 61.977 | 263 | 88 | 6 | 8 | 258 | 3 | 265 | 6.84e-105 | 310 |
| MS.gene52072.t1 | MTR_1g025420 | 63.600 | 250 | 79 | 6 | 8 | 246 | 3 | 251 | 1.49e-103 | 304 |
| MS.gene52072.t1 | MTR_8g037890 | 57.588 | 257 | 101 | 5 | 9 | 257 | 9 | 265 | 3.95e-97 | 290 |
| MS.gene52072.t1 | MTR_8g075550 | 61.506 | 239 | 80 | 4 | 20 | 247 | 23 | 260 | 1.18e-95 | 285 |
| MS.gene52072.t1 | MTR_3g114030 | 63.478 | 230 | 76 | 5 | 21 | 242 | 3 | 232 | 9.55e-95 | 280 |
| MS.gene52072.t1 | MTR_5g022310 | 54.815 | 270 | 110 | 5 | 9 | 266 | 9 | 278 | 1.52e-92 | 277 |
| MS.gene52072.t1 | MTR_5g022310 | 57.430 | 249 | 94 | 5 | 9 | 246 | 9 | 256 | 6.15e-92 | 274 |
| MS.gene52072.t1 | MTR_4g073730 | 55.285 | 246 | 100 | 4 | 3 | 240 | 5 | 248 | 4.23e-90 | 271 |
| MS.gene52072.t1 | MTR_4g073730 | 55.285 | 246 | 100 | 4 | 3 | 240 | 5 | 248 | 8.78e-90 | 271 |
| MS.gene52072.t1 | MTR_8g056820 | 55.777 | 251 | 101 | 6 | 4 | 246 | 7 | 255 | 2.57e-89 | 268 |
| MS.gene52072.t1 | MTR_6g079580 | 53.586 | 237 | 103 | 4 | 9 | 240 | 6 | 240 | 5.50e-88 | 263 |
| MS.gene52072.t1 | MTR_3g111620 | 55.263 | 228 | 94 | 5 | 23 | 244 | 25 | 250 | 1.72e-84 | 255 |
| MS.gene52072.t1 | MTR_8g036215 | 53.333 | 240 | 105 | 4 | 4 | 239 | 1 | 237 | 2.30e-84 | 254 |
| MS.gene52072.t1 | MTR_1g021945 | 56.637 | 226 | 90 | 4 | 25 | 244 | 26 | 249 | 2.22e-83 | 252 |
| MS.gene52072.t1 | MTR_8g107140 | 50.612 | 245 | 114 | 4 | 3 | 242 | 5 | 247 | 9.85e-83 | 250 |
| MS.gene52072.t1 | MTR_1g062590 | 53.252 | 246 | 102 | 7 | 4 | 240 | 1 | 242 | 8.00e-80 | 243 |
| MS.gene52072.t1 | MTR_7g102380 | 50.206 | 243 | 114 | 5 | 6 | 242 | 2 | 243 | 1.08e-79 | 243 |
| MS.gene52072.t1 | MTR_1g062630 | 52.419 | 248 | 105 | 7 | 4 | 242 | 1 | 244 | 1.78e-79 | 243 |
| MS.gene52072.t1 | MTR_1g062660 | 52.846 | 246 | 107 | 7 | 4 | 242 | 1 | 244 | 8.39e-77 | 235 |
| MS.gene52072.t1 | MTR_1g062370 | 52.016 | 248 | 106 | 7 | 4 | 242 | 1 | 244 | 1.70e-76 | 234 |
| MS.gene52072.t1 | MTR_1g062350 | 52.016 | 248 | 106 | 7 | 4 | 242 | 1 | 244 | 1.81e-76 | 234 |
| MS.gene52072.t1 | MTR_2g069660 | 50.833 | 240 | 108 | 5 | 8 | 240 | 7 | 243 | 3.48e-76 | 233 |
| MS.gene52072.t1 | MTR_1g062340 | 53.165 | 237 | 101 | 6 | 12 | 242 | 12 | 244 | 2.46e-75 | 231 |
| MS.gene52072.t1 | MTR_5g059200 | 48.000 | 250 | 119 | 7 | 23 | 269 | 27 | 268 | 1.62e-72 | 226 |
| MS.gene52072.t1 | MTR_2g068655 | 49.351 | 231 | 111 | 4 | 21 | 245 | 27 | 257 | 1.61e-70 | 221 |
| MS.gene52072.t1 | MTR_2g068030 | 49.772 | 219 | 104 | 4 | 27 | 239 | 25 | 243 | 3.03e-70 | 219 |
| MS.gene52072.t1 | MTR_2g067980 | 50.218 | 229 | 106 | 4 | 22 | 242 | 21 | 249 | 1.22e-68 | 231 |
| MS.gene52072.t1 | MTR_3g068015 | 45.982 | 224 | 114 | 4 | 23 | 240 | 26 | 248 | 2.23e-68 | 214 |
| MS.gene52072.t1 | MTR_7g062610 | 45.378 | 238 | 120 | 4 | 8 | 240 | 10 | 242 | 1.53e-66 | 209 |
| MS.gene52072.t1 | MTR_6g009480 | 43.701 | 254 | 129 | 8 | 1 | 241 | 1 | 253 | 1.70e-64 | 204 |
| MS.gene52072.t1 | MTR_4g063630 | 45.798 | 238 | 116 | 8 | 13 | 239 | 16 | 251 | 6.01e-63 | 200 |
| MS.gene52072.t1 | MTR_5g022350 | 67.808 | 146 | 42 | 2 | 11 | 154 | 80 | 222 | 3.05e-62 | 197 |
| MS.gene52072.t1 | MTR_1g062690 | 45.344 | 247 | 100 | 7 | 4 | 242 | 1 | 220 | 3.10e-60 | 192 |
| MS.gene52072.t1 | MTR_5g010635 | 46.575 | 219 | 97 | 10 | 25 | 240 | 24 | 225 | 5.28e-50 | 166 |
| MS.gene52072.t1 | MTR_5g023850 | 40.711 | 253 | 103 | 9 | 4 | 246 | 7 | 222 | 3.42e-49 | 164 |
| MS.gene52072.t1 | MTR_8g096900 | 41.453 | 234 | 114 | 10 | 11 | 240 | 34 | 248 | 6.02e-47 | 159 |
| MS.gene52072.t1 | MTR_5g010640 | 38.800 | 250 | 129 | 10 | 1 | 240 | 1 | 236 | 4.10e-45 | 154 |
| MS.gene52072.t1 | MTR_2g067990 | 42.291 | 227 | 101 | 8 | 21 | 242 | 23 | 224 | 1.09e-44 | 163 |
| MS.gene52072.t1 | MTR_8g089020 | 47.134 | 157 | 59 | 3 | 79 | 232 | 21 | 156 | 1.24e-41 | 142 |
| MS.gene52072.t1 | MTR_2g067970 | 41.270 | 189 | 102 | 5 | 67 | 247 | 2 | 189 | 7.53e-40 | 149 |
| MS.gene52072.t1 | MTR_7g076360 | 36.893 | 206 | 72 | 3 | 25 | 230 | 8 | 155 | 9.93e-38 | 132 |
| MS.gene52072.t1 | MTR_2g063150 | 30.738 | 244 | 150 | 7 | 3 | 232 | 4 | 242 | 1.47e-34 | 127 |
| MS.gene52072.t1 | MTR_1g062390 | 30.769 | 247 | 149 | 7 | 6 | 241 | 4 | 239 | 5.21e-31 | 117 |
| MS.gene52072.t1 | MTR_8g096910 | 44.304 | 158 | 73 | 8 | 9 | 164 | 6 | 150 | 8.10e-27 | 104 |
| MS.gene52072.t1 | MTR_8g096920 | 46.617 | 133 | 57 | 7 | 9 | 139 | 6 | 126 | 4.66e-26 | 102 |
| MS.gene52072.t1 | MTR_1g062640 | 39.130 | 115 | 68 | 2 | 51 | 164 | 33 | 146 | 6.79e-18 | 79.7 |
| MS.gene52072.t1 | MTR_3g081550 | 50.526 | 95 | 40 | 4 | 109 | 196 | 15 | 109 | 2.23e-16 | 74.3 |
| MS.gene52072.t1 | MTR_5g068670 | 48.864 | 88 | 34 | 4 | 62 | 141 | 5 | 89 | 2.63e-14 | 69.3 |
| MS.gene52072.t1 | MTR_8g088960 | 45.946 | 74 | 36 | 3 | 125 | 196 | 14 | 85 | 4.89e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52072.t1 | AT4G38660 | 64.793 | 338 | 92 | 6 | 5 | 317 | 9 | 344 | 1.80e-143 | 408 |
| MS.gene52072.t1 | AT4G38660 | 65.839 | 322 | 84 | 5 | 20 | 317 | 3 | 322 | 1.53e-140 | 400 |
| MS.gene52072.t1 | AT4G24180 | 68.651 | 252 | 69 | 4 | 5 | 248 | 10 | 259 | 3.38e-121 | 350 |
| MS.gene52072.t1 | AT4G24180 | 68.235 | 255 | 70 | 4 | 5 | 248 | 10 | 264 | 7.46e-121 | 350 |
| MS.gene52072.t1 | AT4G24180 | 68.826 | 247 | 67 | 4 | 5 | 243 | 10 | 254 | 3.34e-119 | 343 |
| MS.gene52072.t1 | AT4G24180 | 68.400 | 250 | 68 | 4 | 5 | 243 | 10 | 259 | 5.70e-119 | 343 |
| MS.gene52072.t1 | AT4G24180 | 67.249 | 229 | 65 | 4 | 5 | 225 | 10 | 236 | 7.62e-107 | 315 |
| MS.gene52072.t1 | AT4G24180 | 66.379 | 232 | 67 | 4 | 5 | 225 | 10 | 241 | 1.26e-106 | 314 |
| MS.gene52072.t1 | AT1G75800 | 58.462 | 260 | 95 | 6 | 1 | 249 | 1 | 258 | 2.44e-97 | 291 |
| MS.gene52072.t1 | AT1G20030 | 64.502 | 231 | 72 | 5 | 21 | 241 | 16 | 246 | 4.11e-96 | 287 |
| MS.gene52072.t1 | AT1G20030 | 65.487 | 226 | 68 | 5 | 26 | 241 | 4 | 229 | 3.09e-95 | 284 |
| MS.gene52072.t1 | AT4G36010 | 58.468 | 248 | 90 | 5 | 21 | 255 | 19 | 266 | 4.71e-93 | 278 |
| MS.gene52072.t1 | AT4G36010 | 58.468 | 248 | 90 | 5 | 21 | 255 | 19 | 266 | 4.71e-93 | 278 |
| MS.gene52072.t1 | AT1G19320 | 56.452 | 248 | 97 | 5 | 1 | 239 | 1 | 246 | 1.31e-91 | 273 |
| MS.gene52072.t1 | AT1G75030 | 57.200 | 250 | 92 | 8 | 1 | 241 | 1 | 244 | 3.22e-89 | 267 |
| MS.gene52072.t1 | AT2G17860 | 54.688 | 256 | 102 | 6 | 1 | 245 | 1 | 253 | 4.79e-89 | 267 |
| MS.gene52072.t1 | AT1G75040 | 56.148 | 244 | 98 | 6 | 1 | 240 | 1 | 239 | 1.96e-86 | 259 |
| MS.gene52072.t1 | AT1G75050 | 57.025 | 242 | 91 | 7 | 9 | 241 | 7 | 244 | 2.03e-86 | 259 |
| MS.gene52072.t1 | AT1G18250 | 56.000 | 225 | 92 | 4 | 23 | 242 | 19 | 241 | 2.23e-85 | 257 |
| MS.gene52072.t1 | AT1G18250 | 56.502 | 223 | 90 | 4 | 25 | 242 | 22 | 242 | 2.65e-85 | 257 |
| MS.gene52072.t1 | AT1G73620 | 56.250 | 224 | 91 | 4 | 23 | 241 | 40 | 261 | 2.85e-84 | 255 |
| MS.gene52072.t1 | AT4G38670 | 55.967 | 243 | 96 | 6 | 9 | 240 | 5 | 247 | 1.51e-83 | 254 |
| MS.gene52072.t1 | AT4G38670 | 55.967 | 243 | 96 | 6 | 9 | 240 | 5 | 247 | 1.51e-83 | 254 |
| MS.gene52072.t1 | AT4G38670 | 58.929 | 224 | 83 | 5 | 26 | 240 | 8 | 231 | 2.89e-83 | 252 |
| MS.gene52072.t1 | AT5G24620 | 52.419 | 248 | 102 | 6 | 25 | 257 | 25 | 271 | 6.27e-82 | 254 |
| MS.gene52072.t1 | AT5G24620 | 52.419 | 248 | 102 | 6 | 25 | 257 | 80 | 326 | 9.05e-82 | 255 |
| MS.gene52072.t1 | AT5G24620 | 52.419 | 248 | 102 | 6 | 25 | 257 | 101 | 347 | 1.10e-81 | 256 |
| MS.gene52072.t1 | AT4G36000 | 60.287 | 209 | 75 | 5 | 101 | 308 | 1 | 202 | 3.54e-76 | 232 |
| MS.gene52072.t1 | AT4G36000 | 60.287 | 209 | 75 | 5 | 101 | 308 | 1 | 202 | 3.54e-76 | 232 |
| MS.gene52072.t1 | AT1G77700 | 49.153 | 236 | 110 | 6 | 9 | 241 | 45 | 273 | 4.58e-74 | 231 |
| MS.gene52072.t1 | AT1G77700 | 49.174 | 242 | 112 | 7 | 4 | 241 | 39 | 273 | 1.24e-73 | 229 |
| MS.gene52072.t1 | AT1G77700 | 50.901 | 222 | 99 | 6 | 23 | 241 | 87 | 301 | 3.13e-73 | 230 |
| MS.gene52072.t1 | AT5G38280 | 47.131 | 244 | 113 | 5 | 21 | 248 | 21 | 264 | 1.10e-72 | 237 |
| MS.gene52072.t1 | AT5G38280 | 47.131 | 244 | 113 | 5 | 21 | 248 | 21 | 264 | 1.54e-72 | 236 |
| MS.gene52072.t1 | AT5G40020 | 43.426 | 251 | 132 | 4 | 1 | 242 | 1 | 250 | 6.40e-68 | 213 |
| MS.gene52072.t1 | AT2G28790 | 47.755 | 245 | 115 | 8 | 4 | 239 | 33 | 273 | 1.70e-65 | 207 |
| MS.gene52072.t1 | AT2G28790 | 47.755 | 245 | 115 | 8 | 4 | 239 | 8 | 248 | 1.71e-65 | 206 |
| MS.gene52072.t1 | AT5G02140 | 45.992 | 237 | 121 | 5 | 10 | 240 | 6 | 241 | 1.45e-64 | 206 |
| MS.gene52072.t1 | AT5G02140 | 45.992 | 237 | 121 | 5 | 10 | 240 | 6 | 241 | 1.90e-64 | 204 |
| MS.gene52072.t1 | AT4G18253 | 39.419 | 241 | 137 | 3 | 9 | 245 | 8 | 243 | 1.93e-54 | 178 |
| MS.gene52072.t1 | AT4G11650 | 43.846 | 260 | 122 | 12 | 2 | 257 | 3 | 242 | 6.15e-53 | 174 |
| MS.gene52072.t1 | AT1G70250 | 39.764 | 254 | 130 | 8 | 26 | 266 | 146 | 389 | 4.91e-52 | 183 |
| MS.gene52072.t1 | AT4G18250 | 40.506 | 237 | 132 | 5 | 23 | 254 | 55 | 287 | 1.10e-44 | 162 |
| MS.gene52072.t1 | AT5G24620 | 51.429 | 140 | 55 | 4 | 131 | 257 | 15 | 154 | 3.13e-39 | 140 |
| MS.gene52072.t1 | AT2G24810 | 61.039 | 77 | 27 | 1 | 166 | 239 | 116 | 192 | 8.54e-26 | 102 |
Find 103 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGGTTGGTCCGGCCGGTTC+TGG | 0.121811 | 4.1:+30080338 | MS.gene52072:CDS |
| TCTGCATTTGTTTACTCTAT+TGG | 0.185739 | 4.1:+30081782 | MS.gene52072:CDS |
| GTGAACTCAGCTAGGGTTGC+TGG | 0.336395 | 4.1:-30080463 | None:intergenic |
| CCAGGAGCAGGGACAGTGAT+AGG | 0.340612 | 4.1:+30081566 | MS.gene52072:CDS |
| ACTGTCCCTGCTCCTGGTAT+TGG | 0.357647 | 4.1:-30081560 | None:intergenic |
| TTTATTTACCTTGGAGAAGA+TGG | 0.363744 | 4.1:-30080850 | None:intergenic |
| CGGTTGGTCCGGCCGGTTCT+GGG | 0.371851 | 4.1:+30080339 | MS.gene52072:CDS |
| CCAGAACCGGCCGGACCAAC+CGG | 0.372349 | 4.1:-30080338 | None:intergenic |
| GGTATTGGTGTTGAGGTCAT+TGG | 0.375177 | 4.1:-30081545 | None:intergenic |
| GTTGAGGTCATTGGAGTTGT+TGG | 0.375805 | 4.1:-30081536 | None:intergenic |
| TTAACTCCGCTGGACATTGC+TGG | 0.382982 | 4.1:-30080612 | None:intergenic |
| CTCCAGCCGGTTGGTCCGGC+CGG | 0.396644 | 4.1:+30080332 | MS.gene52072:CDS |
| GTTGGAACAGGATCTGAAAA+TGG | 0.408945 | 4.1:+30081599 | MS.gene52072:CDS |
| ACAAATGTGCCTACACAGTA+TGG | 0.411373 | 4.1:+30080224 | MS.gene52072:CDS |
| CAAGCTCCAGCCGGTTGGTC+CGG | 0.411921 | 4.1:+30080328 | MS.gene52072:CDS |
| GGCCGGTTCTGGGCTCGAAC+CGG | 0.412457 | 4.1:+30080349 | MS.gene52072:CDS |
| TAGGCGTAGCTATACGATCT+AGG | 0.413391 | 4.1:-30080769 | None:intergenic |
| AAGAGCGCGTGTGAGGCTTT+TGG | 0.414184 | 4.1:+30080658 | MS.gene52072:CDS |
| TACGACGTGAGTCTTGTTGA+TGG | 0.422524 | 4.1:+30080511 | MS.gene52072:CDS |
| AAACCGGTGCTTCCGAGTGT+TGG | 0.422655 | 4.1:-30080274 | None:intergenic |
| TCAGATCCTGTTCCAACCTC+AGG | 0.424740 | 4.1:-30081593 | None:intergenic |
| AACCGGTGCTTCCGAGTGTT+GGG | 0.429937 | 4.1:-30080273 | None:intergenic |
| TCGGGTATGTGTGAGTCCAC+CGG | 0.437031 | 4.1:+30080571 | MS.gene52072:CDS |
| ACCAGAGCCTTCAACAATCA+TGG | 0.440414 | 4.1:-30080545 | None:intergenic |
| AACCGGTTCGAGCCCAGAAC+CGG | 0.440678 | 4.1:-30080351 | None:intergenic |
| CGCGCCACTACAACAATACT+CGG | 0.445194 | 4.1:-30080686 | None:intergenic |
| TTCTTGTGGAAGCTCGAAAC+CGG | 0.455126 | 4.1:-30080290 | None:intergenic |
| CCTATCACTGTCCCTGCTCC+TGG | 0.456736 | 4.1:-30081566 | None:intergenic |
| GAGTTCACTCTTGGCACTAT+AGG | 0.458610 | 4.1:+30080478 | MS.gene52072:CDS |
| TGGATCATATTTAGCTGGAT+TGG | 0.461151 | 4.1:+30081730 | MS.gene52072:CDS |
| GTTGAAGGCTCTGGTGGGTC+GGG | 0.465729 | 4.1:+30080553 | MS.gene52072:CDS |
| AATCTACCCATGATTGTTGA+AGG | 0.467465 | 4.1:+30080538 | MS.gene52072:CDS |
| AACTTCGACGGATCCGGCTC+CGG | 0.467634 | 4.1:+30080376 | MS.gene52072:CDS |
| AACCGGCCGGACCAACCGGC+TGG | 0.468762 | 4.1:-30080334 | None:intergenic |
| TTGTAGACCGTCGATTTACT+CGG | 0.469194 | 4.1:+30080726 | MS.gene52072:CDS |
| CGGGTATGTGTGAGTCCACC+GGG | 0.470901 | 4.1:+30080572 | MS.gene52072:CDS |
| CCCATGATTGTTGAAGGCTC+TGG | 0.472347 | 4.1:+30080544 | MS.gene52072:CDS |
| TATTGTTGTAGTGGCGCGTA+TGG | 0.473651 | 4.1:+30080691 | MS.gene52072:CDS |
| GGTTGCTGGTGGTGCAGCTC+CGG | 0.475246 | 4.1:-30080449 | None:intergenic |
| GGTTGCAACTTCGACGGATC+CGG | 0.475598 | 4.1:+30080370 | MS.gene52072:CDS |
| GGGACTCCTGAGGTTGGAAC+AGG | 0.482015 | 4.1:+30081587 | MS.gene52072:CDS |
| CCTTGGAGAAGATGGACAAA+AGG | 0.482274 | 4.1:-30080842 | None:intergenic |
| GCAGATGGATCATATTTAGC+TGG | 0.484088 | 4.1:+30081725 | MS.gene52072:intron |
| CGCACTTTCCAAGCTCCAGC+CGG | 0.485696 | 4.1:+30080319 | MS.gene52072:CDS |
| CCTGCATTTGCTAGAATACC+TGG | 0.487206 | 4.1:-30080247 | None:intergenic |
| CGGACCAACCGGCTGGAGCT+TGG | 0.491158 | 4.1:-30080327 | None:intergenic |
| TGTTGAAGGCTCTGGTGGGT+CGG | 0.495865 | 4.1:+30080552 | MS.gene52072:CDS |
| CATGTTTGAGCCACAGTCTC+CGG | 0.501661 | 4.1:-30080410 | None:intergenic |
| TGCTCCTGGTATTGGTGTTG+AGG | 0.514274 | 4.1:-30081552 | None:intergenic |
| TCTGAAGCTCTTAACTCCGC+TGG | 0.518210 | 4.1:-30080622 | None:intergenic |
| ATGATTGTTGAAGGCTCTGG+TGG | 0.522224 | 4.1:+30080547 | MS.gene52072:CDS |
| GTCTCCGGTGAGACATGAAC+CGG | 0.525969 | 4.1:-30080395 | None:intergenic |
| ACCCTAGCTGAGTTCACTCT+TGG | 0.527571 | 4.1:+30080469 | MS.gene52072:CDS |
| ATGGTAGAATGCAACGGTGC+CGG | 0.536138 | 4.1:+30080430 | MS.gene52072:CDS |
| GGTGAGACATGAACCGGAGC+CGG | 0.538750 | 4.1:-30080389 | None:intergenic |
| GGATCCGTCGAAGTTGCAAC+CGG | 0.540266 | 4.1:-30080368 | None:intergenic |
| GTGATAGGGACTCCTGAGGT+TGG | 0.541020 | 4.1:+30081581 | MS.gene52072:CDS |
| AGCCCAACACTCGGAAGCAC+CGG | 0.545623 | 4.1:+30080271 | MS.gene52072:CDS |
| CTTTCCAAGCTCCAGCCGGT+TGG | 0.546315 | 4.1:+30080323 | MS.gene52072:CDS |
| AAAGAGAGTGATATAAGTTG+AGG | 0.549260 | 4.1:-30080051 | None:intergenic |
| CGCGTGTAAGAGCGCGTGTG+AGG | 0.556474 | 4.1:+30080651 | MS.gene52072:CDS |
| TGCCAAGAGTGAACTCAGCT+AGG | 0.556861 | 4.1:-30080471 | None:intergenic |
| TCAACACCAATACCAGGAGC+AGG | 0.558407 | 4.1:+30081554 | MS.gene52072:CDS |
| AGGCGTAGCTATACGATCTA+GGG | 0.561666 | 4.1:-30080768 | None:intergenic |
| GCCAAGAGTGAACTCAGCTA+GGG | 0.562984 | 4.1:-30080470 | None:intergenic |
| TATTTAGCTGGATTGGCCAT+GGG | 0.568640 | 4.1:+30081737 | MS.gene52072:CDS |
| CAGGAGCAGGGACAGTGATA+GGG | 0.571920 | 4.1:+30081567 | MS.gene52072:CDS |
| AACATTTCCGAGTAAATCGA+CGG | 0.574542 | 4.1:-30080733 | None:intergenic |
| CGGAGACTGTGGCTCAAACA+TGG | 0.576529 | 4.1:+30080411 | MS.gene52072:CDS |
| CCAGAGCCTTCAACAATCAT+GGG | 0.576787 | 4.1:-30080544 | None:intergenic |
| TGTGCCTACACAGTATGGCC+AGG | 0.579329 | 4.1:+30080229 | MS.gene52072:CDS |
| CCAGGTATTCTAGCAAATGC+AGG | 0.579356 | 4.1:+30080247 | MS.gene52072:CDS |
| TGCAGATGAAGTTGTTGTAG+AGG | 0.581360 | 4.1:-30081765 | None:intergenic |
| TAGTGGCGCGTATGGTTCAC+CGG | 0.583066 | 4.1:+30080699 | MS.gene52072:CDS |
| ACATTTGTTTACAAATGTGA+AGG | 0.586021 | 4.1:-30080209 | None:intergenic |
| ATATTTAGCTGGATTGGCCA+TGG | 0.590981 | 4.1:+30081736 | MS.gene52072:CDS |
| GTTCAGATCGGAAGTACACC+CGG | 0.591972 | 4.1:-30080590 | None:intergenic |
| TCATGTCTCACCGGAGACTG+TGG | 0.594100 | 4.1:+30080400 | MS.gene52072:CDS |
| GCGGAGTTAAGAGCTTCAGA+TGG | 0.606315 | 4.1:+30080625 | MS.gene52072:CDS |
| TGGACATTGCTGGTTCAGAT+CGG | 0.606939 | 4.1:-30080602 | None:intergenic |
| GGTTCGAGCCCAGAACCGGC+CGG | 0.616663 | 4.1:-30080347 | None:intergenic |
| ATGACCTCAACACCAATACC+AGG | 0.616871 | 4.1:+30081548 | MS.gene52072:CDS |
| ATCGACGGTCTACAAGTAGC+CGG | 0.622951 | 4.1:-30080718 | None:intergenic |
| GGCTCCGGTTCATGTCTCAC+CGG | 0.626577 | 4.1:+30080391 | MS.gene52072:CDS |
| AATGCAGGTAGCCCAACACT+CGG | 0.635714 | 4.1:+30080262 | MS.gene52072:CDS |
| AGTCCCGAGTATTGTTGTAG+TGG | 0.636472 | 4.1:+30080682 | MS.gene52072:CDS |
| AATACCTGGCCATACTGTGT+AGG | 0.637300 | 4.1:-30080233 | None:intergenic |
| CGAACCGGTTGCAACTTCGA+CGG | 0.637688 | 4.1:+30080364 | MS.gene52072:CDS |
| TGGAGCTTGGAAAGTGCGAG+TGG | 0.641087 | 4.1:-30080314 | None:intergenic |
| TGTTGTAGAGGAGTCTCCCA+TGG | 0.642923 | 4.1:-30081753 | None:intergenic |
| GCGCCACTACAACAATACTC+GGG | 0.652627 | 4.1:-30080685 | None:intergenic |
| TCAAACATGGTAGAATGCAA+CGG | 0.654931 | 4.1:+30080424 | MS.gene52072:CDS |
| AGAAGATGGACAAAAGGTAA+CGG | 0.655103 | 4.1:-30080836 | None:intergenic |
| AACTCAGCTAGGGTTGCTGG+TGG | 0.659719 | 4.1:-30080460 | None:intergenic |
| CAACACCAATACCAGGAGCA+GGG | 0.663691 | 4.1:+30081555 | MS.gene52072:CDS |
| AGTACTCGAAGCATCATCGT+AGG | 0.663812 | 4.1:-30080788 | None:intergenic |
| TGATTGTTGAAGGCTCTGGT+GGG | 0.669561 | 4.1:+30080548 | MS.gene52072:CDS |
| TGAAAATGGAGTTCAATACA+CGG | 0.669710 | 4.1:+30081613 | MS.gene52072:CDS |
| AAAGTGCGAGTGGTTTCTTG+TGG | 0.674516 | 4.1:-30080304 | None:intergenic |
| GAAAATGGAGTTCAATACAC+GGG | 0.685341 | 4.1:+30081614 | MS.gene52072:CDS |
| TCTGAACCAGCAATGTCCAG+CGG | 0.703644 | 4.1:+30080606 | MS.gene52072:CDS |
| GACAGTGATAGGGACTCCTG+AGG | 0.705413 | 4.1:+30081577 | MS.gene52072:CDS |
| CAGATCGGAAGTACACCCGG+TGG | 0.809112 | 4.1:-30080587 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTAATTTTATTTACCT+TGG | - | chr4.1:30080862-30080881 | None:intergenic | 15.0% |
| !! | AATAATGAAAACATAGACAA+AGG | - | chr4.1:30080114-30080133 | None:intergenic | 20.0% |
| !!! | AATTTTGTGATTGTAGAAAT+TGG | + | chr4.1:30081461-30081480 | MS.gene52072:intron | 20.0% |
| !!! | ATGTTAAAAGTATGTAAACT+AGG | + | chr4.1:30080899-30080918 | MS.gene52072:intron | 20.0% |
| !!! | TGTTAAAAGTATGTAAACTA+GGG | + | chr4.1:30080900-30080919 | MS.gene52072:intron | 20.0% |
| !!! | TTTTTTACATGTTTTTGTTC+AGG | + | chr4.1:30080172-30080191 | MS.gene52072:intron | 20.0% |
| ! | ACATTTGTTTACAAATGTGA+AGG | - | chr4.1:30080212-30080231 | None:intergenic | 25.0% |
| ! | GTCAGAAATTATTCTTCAAA+AGG | - | chr4.1:30081021-30081040 | None:intergenic | 25.0% |
| ! | GTTAATAGTAGATTTATCGT+TGG | + | chr4.1:30081252-30081271 | MS.gene52072:intron | 25.0% |
| ! | TAACAACATTGTCGTATAAT+GGG | - | chr4.1:30080927-30080946 | None:intergenic | 25.0% |
| ! | TTAACAACATTGTCGTATAA+TGG | - | chr4.1:30080928-30080947 | None:intergenic | 25.0% |
| !! | CAAGAAAAAGTTAGTGTTTT+TGG | - | chr4.1:30080150-30080169 | None:intergenic | 25.0% |
| AAAGAGAGTGATATAAGTTG+AGG | - | chr4.1:30080054-30080073 | None:intergenic | 30.0% | |
| AAAGTCATGTAATGTCATCA+TGG | + | chr4.1:30081121-30081140 | MS.gene52072:intron | 30.0% | |
| AACTAGTCATCTTAAGCAAA+CGG | + | chr4.1:30081311-30081330 | MS.gene52072:intron | 30.0% | |
| ATCTTAAGCAAACGGTTAAA+TGG | + | chr4.1:30081319-30081338 | MS.gene52072:intron | 30.0% | |
| ATTTCCACTTTCAGATTTGT+AGG | + | chr4.1:30081172-30081191 | MS.gene52072:intron | 30.0% | |
| GATTGTAACAACTTGTGATA+TGG | + | chr4.1:30081486-30081505 | MS.gene52072:intron | 30.0% | |
| TCTGCATTTGTTTACTCTAT+TGG | + | chr4.1:30081782-30081801 | MS.gene52072:CDS | 30.0% | |
| TGAAAATGGAGTTCAATACA+CGG | + | chr4.1:30081613-30081632 | MS.gene52072:CDS | 30.0% | |
| TTTATTTACCTTGGAGAAGA+TGG | - | chr4.1:30080853-30080872 | None:intergenic | 30.0% | |
| TTTCCACTTTCAGATTTGTA+GGG | + | chr4.1:30081173-30081192 | MS.gene52072:intron | 30.0% | |
| !! | AAAGGTTGTGTTTTTACCTT+TGG | - | chr4.1:30080096-30080115 | None:intergenic | 30.0% |
| !! | AAGGTTGTGTTTTTACCTTT+GGG | - | chr4.1:30080095-30080114 | None:intergenic | 30.0% |
| !! | TCGTTGGCATTTAATTTGTT+AGG | + | chr4.1:30081268-30081287 | MS.gene52072:intron | 30.0% |
| !!! | GTTAGTGTTTTTGGTTTTGA+AGG | - | chr4.1:30080141-30080160 | None:intergenic | 30.0% |
| AAACCCTACAAATCTGAAAG+TGG | - | chr4.1:30081179-30081198 | None:intergenic | 35.0% | |
| AACATTTCCGAGTAAATCGA+CGG | - | chr4.1:30080736-30080755 | None:intergenic | 35.0% | |
| AATCTACCCATGATTGTTGA+AGG | + | chr4.1:30080538-30080557 | MS.gene52072:CDS | 35.0% | |
| AGAAGATGGACAAAAGGTAA+CGG | - | chr4.1:30080839-30080858 | None:intergenic | 35.0% | |
| ATAAAATCCCACTTGCTCAA+AGG | + | chr4.1:30081412-30081431 | MS.gene52072:intron | 35.0% | |
| ATTCAGTTCCCGTAAATTCA+GGG | + | chr4.1:30081657-30081676 | MS.gene52072:intron | 35.0% | |
| GAAAATGGAGTTCAATACAC+GGG | + | chr4.1:30081614-30081633 | MS.gene52072:CDS | 35.0% | |
| TAAAATCCCACTTGCTCAAA+GGG | + | chr4.1:30081413-30081432 | MS.gene52072:intron | 35.0% | |
| TATTCAGTTCCCGTAAATTC+AGG | + | chr4.1:30081656-30081675 | MS.gene52072:intron | 35.0% | |
| TCAAACATGGTAGAATGCAA+CGG | + | chr4.1:30080424-30080443 | MS.gene52072:CDS | 35.0% | |
| TGGATCATATTTAGCTGGAT+TGG | + | chr4.1:30081730-30081749 | MS.gene52072:CDS | 35.0% | |
| TGTTTCTTCCATGTAACCAT+AGG | + | chr4.1:30081198-30081217 | MS.gene52072:intron | 35.0% | |
| ! | TACTTTTACTTGTACTGCTG+CGG | + | chr4.1:30080807-30080826 | MS.gene52072:CDS | 35.0% |
| !! | AGGTTGTGTTTTTACCTTTG+GGG | - | chr4.1:30080094-30080113 | None:intergenic | 35.0% |
| !! | TGTTTTTGTTCAGGTATCAC+TGG | + | chr4.1:30080181-30080200 | MS.gene52072:intron | 35.0% |
| ACAAATGTGCCTACACAGTA+TGG | + | chr4.1:30080224-30080243 | MS.gene52072:CDS | 40.0% | |
| ATATGATCCATCTGCAAGCA+TGG | - | chr4.1:30081720-30081739 | None:intergenic | 40.0% | |
| ATGTAACCATAGGTAGCCAA+AGG | + | chr4.1:30081208-30081227 | MS.gene52072:intron | 40.0% | |
| GCAGATGGATCATATTTAGC+TGG | + | chr4.1:30081725-30081744 | MS.gene52072:intron | 40.0% | |
| GTTGGAACAGGATCTGAAAA+TGG | + | chr4.1:30081599-30081618 | MS.gene52072:CDS | 40.0% | |
| TCAGCATCTAATTCAGGATC+AGG | + | chr4.1:30081686-30081705 | MS.gene52072:intron | 40.0% | |
| TCCTGAATTAGATGCTGATC+CGG | - | chr4.1:30081684-30081703 | None:intergenic | 40.0% | |
| TGCAGATGAAGTTGTTGTAG+AGG | - | chr4.1:30081768-30081787 | None:intergenic | 40.0% | |
| TGTAACCATAGGTAGCCAAA+GGG | + | chr4.1:30081209-30081228 | MS.gene52072:intron | 40.0% | |
| TTTGGCTACCTATGGTTACA+TGG | - | chr4.1:30081209-30081228 | None:intergenic | 40.0% | |
| !! | ATATTTAGCTGGATTGGCCA+TGG | + | chr4.1:30081736-30081755 | MS.gene52072:CDS | 40.0% |
| !! | GGTTGTGTTTTTACCTTTGG+GGG | - | chr4.1:30080093-30080112 | None:intergenic | 40.0% |
| !! | TATTTAGCTGGATTGGCCAT+GGG | + | chr4.1:30081737-30081756 | MS.gene52072:CDS | 40.0% |
| !! | TTGTAGACCGTCGATTTACT+CGG | + | chr4.1:30080726-30080745 | MS.gene52072:CDS | 40.0% |
| AAAGTGCGAGTGGTTTCTTG+TGG | - | chr4.1:30080307-30080326 | None:intergenic | 45.0% | |
| AATACCTGGCCATACTGTGT+AGG | - | chr4.1:30080236-30080255 | None:intergenic | 45.0% | |
| ACACTACCCTTTGAGCAAGT+GGG | - | chr4.1:30081422-30081441 | None:intergenic | 45.0% | |
| ACCAGAGCCTTCAACAATCA+TGG | - | chr4.1:30080548-30080567 | None:intergenic | 45.0% | |
| ACGGGAACTGAATACCCAAT+GGG | - | chr4.1:30081650-30081669 | None:intergenic | 45.0% | |
| AGCCAAAGGGGAACATAGAA+TGG | + | chr4.1:30081222-30081241 | MS.gene52072:intron | 45.0% | |
| AGCCATTCTATGTTCCCCTT+TGG | - | chr4.1:30081227-30081246 | None:intergenic | 45.0% | |
| AGGCGTAGCTATACGATCTA+GGG | - | chr4.1:30080771-30080790 | None:intergenic | 45.0% | |
| ATGACCTCAACACCAATACC+AGG | + | chr4.1:30081548-30081567 | MS.gene52072:CDS | 45.0% | |
| CCAGAGCCTTCAACAATCAT+GGG | - | chr4.1:30080547-30080566 | None:intergenic | 45.0% | |
| CCAGGTATTCTAGCAAATGC+AGG | + | chr4.1:30080247-30080266 | MS.gene52072:CDS | 45.0% | |
| CCTTGGAGAAGATGGACAAA+AGG | - | chr4.1:30080845-30080864 | None:intergenic | 45.0% | |
| GAGTTCACTCTTGGCACTAT+AGG | + | chr4.1:30080478-30080497 | MS.gene52072:CDS | 45.0% | |
| GCATCTAATTCAGGATCAGG+AGG | + | chr4.1:30081689-30081708 | MS.gene52072:intron | 45.0% | |
| GTAACCATAGGTAGCCAAAG+GGG | + | chr4.1:30081210-30081229 | MS.gene52072:intron | 45.0% | |
| GTTGAGGTCATTGGAGTTGT+TGG | - | chr4.1:30081539-30081558 | None:intergenic | 45.0% | |
| TACACTACCCTTTGAGCAAG+TGG | - | chr4.1:30081423-30081442 | None:intergenic | 45.0% | |
| TACGGGAACTGAATACCCAA+TGG | - | chr4.1:30081651-30081670 | None:intergenic | 45.0% | |
| TAGGCGTAGCTATACGATCT+AGG | - | chr4.1:30080772-30080791 | None:intergenic | 45.0% | |
| TATTGTTGTAGTGGCGCGTA+TGG | + | chr4.1:30080691-30080710 | MS.gene52072:CDS | 45.0% | |
| TCCGGATCAGCATCTAATTC+AGG | + | chr4.1:30081680-30081699 | MS.gene52072:intron | 45.0% | |
| TGATCCGGACCCTGAATTTA+CGG | - | chr4.1:30081669-30081688 | None:intergenic | 45.0% | |
| TTCTTGTGGAAGCTCGAAAC+CGG | - | chr4.1:30080293-30080312 | None:intergenic | 45.0% | |
| ! | AGTACTCGAAGCATCATCGT+AGG | - | chr4.1:30080791-30080810 | None:intergenic | 45.0% |
| ! | AGTCCCGAGTATTGTTGTAG+TGG | + | chr4.1:30080682-30080701 | MS.gene52072:CDS | 45.0% |
| ! | ATGATTGTTGAAGGCTCTGG+TGG | + | chr4.1:30080547-30080566 | MS.gene52072:CDS | 45.0% |
| ! | CCTGCATTTGCTAGAATACC+TGG | - | chr4.1:30080250-30080269 | None:intergenic | 45.0% |
| ! | CCTTTTGTCCATCTTCTCCA+AGG | + | chr4.1:30080842-30080861 | MS.gene52072:CDS | 45.0% |
| ! | TGATTGTTGAAGGCTCTGGT+GGG | + | chr4.1:30080548-30080567 | MS.gene52072:CDS | 45.0% |
| !! | GGTATTGGTGTTGAGGTCAT+TGG | - | chr4.1:30081548-30081567 | None:intergenic | 45.0% |
| !! | TACGACGTGAGTCTTGTTGA+TGG | + | chr4.1:30080511-30080530 | MS.gene52072:CDS | 45.0% |
| !! | TGGACATTGCTGGTTCAGAT+CGG | - | chr4.1:30080605-30080624 | None:intergenic | 45.0% |
| !! | TGTTTTTACCTTTGGGGGTG+AGG | - | chr4.1:30080088-30080107 | None:intergenic | 45.0% |
| AATGCAGGTAGCCCAACACT+CGG | + | chr4.1:30080262-30080281 | MS.gene52072:CDS | 50.0% | |
| ACCCTAGCTGAGTTCACTCT+TGG | + | chr4.1:30080469-30080488 | MS.gene52072:CDS | 50.0% | |
| ATCGACGGTCTACAAGTAGC+CGG | - | chr4.1:30080721-30080740 | None:intergenic | 50.0% | |
| ATGGTAGAATGCAACGGTGC+CGG | + | chr4.1:30080430-30080449 | MS.gene52072:CDS | 50.0% | |
| CAACACCAATACCAGGAGCA+GGG | + | chr4.1:30081555-30081574 | MS.gene52072:CDS | 50.0% | |
| CATGTTTGAGCCACAGTCTC+CGG | - | chr4.1:30080413-30080432 | None:intergenic | 50.0% | |
| CCCATGATTGTTGAAGGCTC+TGG | + | chr4.1:30080544-30080563 | MS.gene52072:CDS | 50.0% | |
| CGCGCCACTACAACAATACT+CGG | - | chr4.1:30080689-30080708 | None:intergenic | 50.0% | |
| GATCCGGACCCTGAATTTAC+GGG | - | chr4.1:30081668-30081687 | None:intergenic | 50.0% | |
| GCCAAGAGTGAACTCAGCTA+GGG | - | chr4.1:30080473-30080492 | None:intergenic | 50.0% | |
| GCGCCACTACAACAATACTC+GGG | - | chr4.1:30080688-30080707 | None:intergenic | 50.0% | |
| GCGGAGTTAAGAGCTTCAGA+TGG | + | chr4.1:30080625-30080644 | MS.gene52072:CDS | 50.0% | |
| GGAGAAACCATGCTTGCAGA+TGG | + | chr4.1:30081710-30081729 | MS.gene52072:intron | 50.0% | |
| GTTCCCGTAAATTCAGGGTC+CGG | + | chr4.1:30081662-30081681 | MS.gene52072:intron | 50.0% | |
| TCAACACCAATACCAGGAGC+AGG | + | chr4.1:30081554-30081573 | MS.gene52072:CDS | 50.0% | |
| TCAGATCCTGTTCCAACCTC+AGG | - | chr4.1:30081596-30081615 | None:intergenic | 50.0% | |
| TCTGAACCAGCAATGTCCAG+CGG | + | chr4.1:30080606-30080625 | MS.gene52072:CDS | 50.0% | |
| TGCCAAGAGTGAACTCAGCT+AGG | - | chr4.1:30080474-30080493 | None:intergenic | 50.0% | |
| TGTTCCCCTTTGGCTACCTA+TGG | - | chr4.1:30081217-30081236 | None:intergenic | 50.0% | |
| TGTTGTAGAGGAGTCTCCCA+TGG | - | chr4.1:30081756-30081775 | None:intergenic | 50.0% | |
| TTAACTCCGCTGGACATTGC+TGG | - | chr4.1:30080615-30080634 | None:intergenic | 50.0% | |
| ! | CTTCTTTTCCTCACCCCCAA+AGG | + | chr4.1:30080077-30080096 | MS.gene52072:CDS | 50.0% |
| ! | GTTCAGATCGGAAGTACACC+CGG | - | chr4.1:30080593-30080612 | None:intergenic | 50.0% |
| ! | TCTGAAGCTCTTAACTCCGC+TGG | - | chr4.1:30080625-30080644 | None:intergenic | 50.0% |
| !! | TGCTCCTGGTATTGGTGTTG+AGG | - | chr4.1:30081555-30081574 | None:intergenic | 50.0% |
| AAACCGGTGCTTCCGAGTGT+TGG | - | chr4.1:30080277-30080296 | None:intergenic | 55.0% | |
| AACCGGTGCTTCCGAGTGTT+GGG | - | chr4.1:30080276-30080295 | None:intergenic | 55.0% | |
| AACTCAGCTAGGGTTGCTGG+TGG | - | chr4.1:30080463-30080482 | None:intergenic | 55.0% | |
| ACGGGTACAGACACACCCAT+TGG | + | chr4.1:30081632-30081651 | MS.gene52072:intron | 55.0% | |
| ACTGTCCCTGCTCCTGGTAT+TGG | - | chr4.1:30081563-30081582 | None:intergenic | 55.0% | |
| CAGGAGCAGGGACAGTGATA+GGG | + | chr4.1:30081567-30081586 | MS.gene52072:CDS | 55.0% | |
| CGAACCGGTTGCAACTTCGA+CGG | + | chr4.1:30080364-30080383 | MS.gene52072:CDS | 55.0% | |
| CGGAGACTGTGGCTCAAACA+TGG | + | chr4.1:30080411-30080430 | MS.gene52072:CDS | 55.0% | |
| CGGGTACAGACACACCCATT+GGG | + | chr4.1:30081633-30081652 | MS.gene52072:intron | 55.0% | |
| GACAGTGATAGGGACTCCTG+AGG | + | chr4.1:30081577-30081596 | MS.gene52072:CDS | 55.0% | |
| GGATCCGTCGAAGTTGCAAC+CGG | - | chr4.1:30080371-30080390 | None:intergenic | 55.0% | |
| GGTTGCAACTTCGACGGATC+CGG | + | chr4.1:30080370-30080389 | MS.gene52072:CDS | 55.0% | |
| GTCTCCGGTGAGACATGAAC+CGG | - | chr4.1:30080398-30080417 | None:intergenic | 55.0% | |
| GTGAACTCAGCTAGGGTTGC+TGG | - | chr4.1:30080466-30080485 | None:intergenic | 55.0% | |
| GTGATAGGGACTCCTGAGGT+TGG | + | chr4.1:30081581-30081600 | MS.gene52072:CDS | 55.0% | |
| TAGTGGCGCGTATGGTTCAC+CGG | + | chr4.1:30080699-30080718 | MS.gene52072:CDS | 55.0% | |
| TCATGTCTCACCGGAGACTG+TGG | + | chr4.1:30080400-30080419 | MS.gene52072:CDS | 55.0% | |
| TCGGGTATGTGTGAGTCCAC+CGG | + | chr4.1:30080571-30080590 | MS.gene52072:CDS | 55.0% | |
| TGTGCCTACACAGTATGGCC+AGG | + | chr4.1:30080229-30080248 | MS.gene52072:CDS | 55.0% | |
| ! | TGGAGCTTGGAAAGTGCGAG+TGG | - | chr4.1:30080317-30080336 | None:intergenic | 55.0% |
| ! | TGTTGAAGGCTCTGGTGGGT+CGG | + | chr4.1:30080552-30080571 | MS.gene52072:CDS | 55.0% |
| !! | AAGAGCGCGTGTGAGGCTTT+TGG | + | chr4.1:30080658-30080677 | MS.gene52072:CDS | 55.0% |
| AACTTCGACGGATCCGGCTC+CGG | + | chr4.1:30080376-30080395 | MS.gene52072:CDS | 60.0% | |
| CCAGGAGCAGGGACAGTGAT+AGG | + | chr4.1:30081566-30081585 | MS.gene52072:CDS | 60.0% | |
| CCTATCACTGTCCCTGCTCC+TGG | - | chr4.1:30081569-30081588 | None:intergenic | 60.0% | |
| CGCACTTTCCAAGCTCCAGC+CGG | + | chr4.1:30080319-30080338 | MS.gene52072:CDS | 60.0% | |
| CGGGTATGTGTGAGTCCACC+GGG | + | chr4.1:30080572-30080591 | MS.gene52072:CDS | 60.0% | |
| CTTTCCAAGCTCCAGCCGGT+TGG | + | chr4.1:30080323-30080342 | MS.gene52072:CDS | 60.0% | |
| GGCTCCGGTTCATGTCTCAC+CGG | + | chr4.1:30080391-30080410 | MS.gene52072:CDS | 60.0% | |
| GGGACTCCTGAGGTTGGAAC+AGG | + | chr4.1:30081587-30081606 | MS.gene52072:CDS | 60.0% | |
| GGTGAGACATGAACCGGAGC+CGG | - | chr4.1:30080392-30080411 | None:intergenic | 60.0% | |
| ! | AGCCCAACACTCGGAAGCAC+CGG | + | chr4.1:30080271-30080290 | MS.gene52072:CDS | 60.0% |
| ! | CAGATCGGAAGTACACCCGG+TGG | - | chr4.1:30080590-30080609 | None:intergenic | 60.0% |
| ! | GTTGAAGGCTCTGGTGGGTC+GGG | + | chr4.1:30080553-30080572 | MS.gene52072:CDS | 60.0% |
| !! | AACCGGTTCGAGCCCAGAAC+CGG | - | chr4.1:30080354-30080373 | None:intergenic | 60.0% |
| ! | CAAGCTCCAGCCGGTTGGTC+CGG | + | chr4.1:30080328-30080347 | MS.gene52072:CDS | 65.0% |
| ! | CGCGTGTAAGAGCGCGTGTG+AGG | + | chr4.1:30080651-30080670 | MS.gene52072:CDS | 65.0% |
| ! | GGTTGCTGGTGGTGCAGCTC+CGG | - | chr4.1:30080452-30080471 | None:intergenic | 65.0% |
| CCAGAACCGGCCGGACCAAC+CGG | - | chr4.1:30080341-30080360 | None:intergenic | 70.0% | |
| CGGACCAACCGGCTGGAGCT+TGG | - | chr4.1:30080330-30080349 | None:intergenic | 70.0% | |
| GGTTCGAGCCCAGAACCGGC+CGG | - | chr4.1:30080350-30080369 | None:intergenic | 70.0% | |
| ! | CGGTTGGTCCGGCCGGTTCT+GGG | + | chr4.1:30080339-30080358 | MS.gene52072:CDS | 70.0% |
| !! | GGCCGGTTCTGGGCTCGAAC+CGG | + | chr4.1:30080349-30080368 | MS.gene52072:CDS | 70.0% |
| AACCGGCCGGACCAACCGGC+TGG | - | chr4.1:30080337-30080356 | None:intergenic | 75.0% | |
| ! | CCGGTTGGTCCGGCCGGTTC+TGG | + | chr4.1:30080338-30080357 | MS.gene52072:CDS | 75.0% |
| ! | CTCCAGCCGGTTGGTCCGGC+CGG | + | chr4.1:30080332-30080351 | MS.gene52072:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 30080038 | 30081832 | 30080038 | ID=MS.gene52072 |
| chr4.1 | mRNA | 30080038 | 30081832 | 30080038 | ID=MS.gene52072.t1;Parent=MS.gene52072 |
| chr4.1 | exon | 30080038 | 30080098 | 30080038 | ID=MS.gene52072.t1.exon1;Parent=MS.gene52072.t1 |
| chr4.1 | CDS | 30080038 | 30080098 | 30080038 | ID=cds.MS.gene52072.t1;Parent=MS.gene52072.t1 |
| chr4.1 | exon | 30080194 | 30080863 | 30080194 | ID=MS.gene52072.t1.exon2;Parent=MS.gene52072.t1 |
| chr4.1 | CDS | 30080194 | 30080863 | 30080194 | ID=cds.MS.gene52072.t1;Parent=MS.gene52072.t1 |
| chr4.1 | exon | 30081517 | 30081635 | 30081517 | ID=MS.gene52072.t1.exon3;Parent=MS.gene52072.t1 |
| chr4.1 | CDS | 30081517 | 30081635 | 30081517 | ID=cds.MS.gene52072.t1;Parent=MS.gene52072.t1 |
| chr4.1 | exon | 30081729 | 30081832 | 30081729 | ID=MS.gene52072.t1.exon4;Parent=MS.gene52072.t1 |
| chr4.1 | CDS | 30081729 | 30081832 | 30081729 | ID=cds.MS.gene52072.t1;Parent=MS.gene52072.t1 |
| Gene Sequence |
| Protein sequence |
