Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52808.t1 | XP_003603827.1 | 98.2 | 280 | 5 | 0 | 1 | 280 | 1 | 280 | 3.30E-146 | 527.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52808.t1 | Q9LN20 | 72.3 | 249 | 62 | 1 | 39 | 280 | 39 | 287 | 5.7e-107 | 388.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52808.t1 | G7J5W0 | 98.2 | 280 | 5 | 0 | 1 | 280 | 1 | 280 | 2.4e-146 | 527.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene52808 | 0.801507 | 8.72E-49 | -1.69E-46 |
| MS.gene049293 | MS.gene52808 | -0.804201 | 2.42E-49 | -1.69E-46 |
| MS.gene050253 | MS.gene52808 | 0.805854 | 1.09E-49 | -1.69E-46 |
| MS.gene051832 | MS.gene52808 | 0.819584 | 1.08E-52 | -1.69E-46 |
| MS.gene052584 | MS.gene52808 | 0.801587 | 8.39E-49 | -1.69E-46 |
| MS.gene053045 | MS.gene52808 | 0.807137 | 5.85E-50 | -1.69E-46 |
| MS.gene053340 | MS.gene52808 | 0.808677 | 2.75E-50 | -1.69E-46 |
| MS.gene053963 | MS.gene52808 | 0.811953 | 5.41E-51 | -1.69E-46 |
| MS.gene054222 | MS.gene52808 | 0.837263 | 5.76E-57 | -1.69E-46 |
| MS.gene054576 | MS.gene52808 | 0.833477 | 5.21E-56 | -1.69E-46 |
| MS.gene055808 | MS.gene52808 | 0.801592 | 8.37E-49 | -1.69E-46 |
| MS.gene056068 | MS.gene52808 | 0.809675 | 1.68E-50 | -1.69E-46 |
| MS.gene056091 | MS.gene52808 | 0.824441 | 8.06E-54 | -1.69E-46 |
| MS.gene056986 | MS.gene52808 | 0.802654 | 5.06E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene52808 | 0.813087 | 3.06E-51 | -1.69E-46 |
| MS.gene05953 | MS.gene52808 | 0.800399 | 1.47E-48 | -1.69E-46 |
| MS.gene05954 | MS.gene52808 | 0.800584 | 1.35E-48 | -1.69E-46 |
| MS.gene05985 | MS.gene52808 | -0.810729 | 9.97E-51 | -1.69E-46 |
| MS.gene060365 | MS.gene52808 | 0.820917 | 5.32E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52808.t1 | MTR_3g114670 | 98.571 | 280 | 4 | 0 | 1 | 280 | 1 | 280 | 0.0 | 572 |
| MS.gene52808.t1 | MTR_5g022960 | 65.979 | 291 | 86 | 3 | 1 | 280 | 1 | 289 | 3.13e-143 | 404 |
| MS.gene52808.t1 | MTR_8g074810 | 61.702 | 282 | 102 | 3 | 1 | 280 | 1 | 278 | 7.40e-125 | 357 |
| MS.gene52808.t1 | MTR_8g074880 | 61.594 | 276 | 103 | 2 | 7 | 280 | 52 | 326 | 9.70e-123 | 353 |
| MS.gene52808.t1 | MTR_8g074890 | 71.759 | 216 | 61 | 0 | 63 | 278 | 60 | 275 | 2.42e-122 | 350 |
| MS.gene52808.t1 | MTR_8g074830 | 59.286 | 280 | 111 | 2 | 1 | 278 | 1 | 279 | 5.63e-119 | 342 |
| MS.gene52808.t1 | MTR_3g114590 | 72.851 | 221 | 54 | 1 | 60 | 280 | 55 | 269 | 1.78e-112 | 337 |
| MS.gene52808.t1 | MTR_3g114590 | 63.590 | 195 | 50 | 2 | 86 | 280 | 293 | 466 | 1.12e-71 | 231 |
| MS.gene52808.t1 | MTR_3g114610 | 66.222 | 225 | 71 | 1 | 56 | 280 | 83 | 302 | 3.28e-107 | 313 |
| MS.gene52808.t1 | MTR_8g074870 | 63.964 | 222 | 66 | 2 | 59 | 280 | 18 | 225 | 1.38e-106 | 309 |
| MS.gene52808.t1 | MTR_6g009440 | 55.000 | 240 | 106 | 2 | 40 | 279 | 23 | 260 | 4.34e-89 | 267 |
| MS.gene52808.t1 | MTR_5g022960 | 60.488 | 205 | 68 | 3 | 1 | 194 | 1 | 203 | 2.50e-84 | 251 |
| MS.gene52808.t1 | MTR_2g020800 | 49.027 | 257 | 114 | 3 | 27 | 278 | 9 | 253 | 1.83e-81 | 248 |
| MS.gene52808.t1 | MTR_2g020800 | 49.027 | 257 | 112 | 4 | 27 | 278 | 9 | 251 | 2.30e-81 | 247 |
| MS.gene52808.t1 | MTR_4g118560 | 55.502 | 209 | 91 | 1 | 72 | 278 | 40 | 248 | 4.25e-80 | 244 |
| MS.gene52808.t1 | MTR_1g116810 | 53.589 | 209 | 83 | 3 | 70 | 273 | 76 | 275 | 3.49e-70 | 218 |
| MS.gene52808.t1 | MTR_4g095370 | 46.445 | 211 | 100 | 8 | 70 | 274 | 86 | 289 | 1.59e-55 | 181 |
| MS.gene52808.t1 | MTR_3g051200 | 65.185 | 135 | 45 | 2 | 84 | 217 | 25 | 158 | 5.40e-54 | 172 |
| MS.gene52808.t1 | MTR_5g016090 | 43.269 | 208 | 109 | 5 | 70 | 273 | 84 | 286 | 4.97e-50 | 167 |
| MS.gene52808.t1 | MTR_6g053720 | 34.866 | 261 | 148 | 8 | 16 | 276 | 3 | 241 | 1.04e-37 | 135 |
| MS.gene52808.t1 | MTR_4g095370 | 42.742 | 124 | 64 | 5 | 70 | 188 | 86 | 207 | 5.57e-23 | 94.0 |
| MS.gene52808.t1 | MTR_4g095370 | 39.716 | 141 | 70 | 6 | 70 | 205 | 86 | 216 | 7.94e-23 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52808.t1 | AT1G20270 | 69.204 | 289 | 78 | 3 | 1 | 280 | 1 | 287 | 1.08e-149 | 420 |
| MS.gene52808.t1 | AT5G66060 | 66.667 | 288 | 88 | 2 | 1 | 280 | 2 | 289 | 1.75e-143 | 405 |
| MS.gene52808.t1 | AT2G17720 | 68.421 | 247 | 70 | 2 | 42 | 280 | 45 | 291 | 9.46e-129 | 367 |
| MS.gene52808.t1 | AT4G35810 | 60.900 | 289 | 102 | 1 | 1 | 278 | 1 | 289 | 8.42e-126 | 360 |
| MS.gene52808.t1 | AT4G35810 | 60.900 | 289 | 102 | 1 | 1 | 278 | 1 | 289 | 8.42e-126 | 360 |
| MS.gene52808.t1 | AT5G66060 | 63.136 | 236 | 77 | 3 | 1 | 228 | 2 | 235 | 1.00e-105 | 307 |
| MS.gene52808.t1 | AT1G20270 | 63.547 | 203 | 63 | 3 | 1 | 194 | 1 | 201 | 7.67e-89 | 263 |
| MS.gene52808.t1 | AT1G20270 | 63.547 | 203 | 63 | 3 | 1 | 194 | 1 | 201 | 7.67e-89 | 263 |
| MS.gene52808.t1 | AT3G28480 | 47.893 | 261 | 134 | 2 | 19 | 279 | 7 | 265 | 4.81e-84 | 254 |
| MS.gene52808.t1 | AT5G18900 | 51.339 | 224 | 102 | 2 | 57 | 278 | 30 | 248 | 5.60e-79 | 241 |
| MS.gene52808.t1 | AT3G06300 | 54.545 | 209 | 93 | 1 | 72 | 278 | 41 | 249 | 6.37e-78 | 238 |
| MS.gene52808.t1 | AT3G28490 | 55.238 | 210 | 88 | 3 | 72 | 278 | 35 | 241 | 4.02e-77 | 236 |
| MS.gene52808.t1 | AT3G28480 | 44.238 | 269 | 140 | 4 | 19 | 279 | 7 | 273 | 3.83e-72 | 224 |
| MS.gene52808.t1 | AT2G43080 | 55.072 | 207 | 85 | 2 | 70 | 274 | 78 | 278 | 8.34e-71 | 220 |
| MS.gene52808.t1 | AT4G35820 | 55.000 | 200 | 60 | 3 | 66 | 257 | 85 | 262 | 1.31e-70 | 219 |
| MS.gene52808.t1 | AT4G33910 | 43.062 | 209 | 110 | 5 | 70 | 274 | 79 | 282 | 4.70e-51 | 169 |
| MS.gene52808.t1 | AT2G23096 | 39.130 | 207 | 122 | 2 | 72 | 278 | 71 | 273 | 4.66e-44 | 151 |
| MS.gene52808.t1 | AT4G25600 | 34.483 | 203 | 107 | 4 | 72 | 274 | 62 | 238 | 3.30e-28 | 110 |
| MS.gene52808.t1 | AT2G43080 | 57.609 | 92 | 37 | 1 | 70 | 159 | 78 | 169 | 7.79e-27 | 103 |
| MS.gene52808.t1 | AT4G25600 | 33.668 | 199 | 104 | 4 | 77 | 274 | 6 | 177 | 3.51e-25 | 100 |
| MS.gene52808.t1 | AT4G25600 | 33.668 | 199 | 104 | 4 | 77 | 274 | 3 | 174 | 4.09e-25 | 100 |
| MS.gene52808.t1 | AT4G25600 | 33.668 | 199 | 104 | 4 | 77 | 274 | 15 | 186 | 4.13e-25 | 100 |
Find 62 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTCTCCTTTCAATATTC+TGG | 0.147205 | 3.1:+90804216 | None:intergenic |
| CTTGAGGAGTACAAAGTTTA+AGG | 0.187091 | 3.1:-90802981 | None:intergenic |
| CAAATGCTCACATTCTTCTT+TGG | 0.212251 | 3.1:+90804502 | None:intergenic |
| AAAGAATCATCGGTTGTATT+AGG | 0.249163 | 3.1:+90806751 | None:intergenic |
| CATTTATTTCCTACAATTAC+TGG | 0.270348 | 3.1:+90803026 | None:intergenic |
| CAATCTGGCCAAGCCTTTCT+TGG | 0.284247 | 3.1:-90804477 | MS.gene52808:CDS |
| TGGGTGATGCTCTGCTGTTT+TGG | 0.327708 | 3.1:-90803361 | MS.gene52808:CDS |
| AGGTTCTTCACTATGGAGTT+GGG | 0.328228 | 3.1:-90803694 | MS.gene52808:CDS |
| CAGTAATTGTAGGAAATAAA+TGG | 0.333015 | 3.1:-90803025 | MS.gene52808:CDS |
| TGTAGGGTTCGAACTAGTTC+AGG | 0.378613 | 3.1:-90804272 | MS.gene52808:intron |
| TAGTCCCTAACCGTGTAAAC+TGG | 0.387706 | 3.1:+90803307 | None:intergenic |
| GGACTTCAGGTTCTTCACTA+TGG | 0.397926 | 3.1:-90803701 | MS.gene52808:CDS |
| CAGGTTCTTCACTATGGAGT+TGG | 0.417299 | 3.1:-90803695 | MS.gene52808:CDS |
| ATCATCCTTCTTCTTGCGCT+CGG | 0.436354 | 3.1:-90806787 | MS.gene52808:CDS |
| AGAGAATGGGGAGGGACTTC+AGG | 0.439161 | 3.1:-90803714 | MS.gene52808:CDS |
| AGTGGACTGAAATTCTTTCA+TGG | 0.440521 | 3.1:-90806589 | MS.gene52808:CDS |
| ATGTGAGCATTTGATCAATC+TGG | 0.447007 | 3.1:-90804492 | MS.gene52808:CDS |
| TTTATCTGAATGTGCTAGAA+AGG | 0.451929 | 3.1:-90803405 | MS.gene52808:CDS |
| GGCGGTTGCCCAGTAATTGT+AGG | 0.473809 | 3.1:-90803035 | MS.gene52808:CDS |
| CTAAAGTTGGCCTTAGCAGC+AGG | 0.483611 | 3.1:+90803449 | None:intergenic |
| GATGAGTTCAACACTAAGAA+TGG | 0.491873 | 3.1:-90803638 | MS.gene52808:CDS |
| GGCCTTAGCAGCAGGAAATA+CGG | 0.495247 | 3.1:+90803457 | None:intergenic |
| AGTGTCGTCGATAGCAAGAC+TGG | 0.497602 | 3.1:-90804446 | MS.gene52808:CDS |
| GTATTCCGAGCGCAAGAAGA+AGG | 0.498036 | 3.1:+90806782 | None:intergenic |
| TTTCAGTCCGGCGGAAAAGA+AGG | 0.501427 | 3.1:-90806615 | MS.gene52808:intron |
| CGTAGGTCTGACGTTGAAGA+AGG | 0.509166 | 3.1:-90803488 | MS.gene52808:intron |
| GACCGTATTTCCTGCTGCTA+AGG | 0.509841 | 3.1:-90803459 | MS.gene52808:CDS |
| ACTCATACCTACTGGTATGA+AGG | 0.511725 | 3.1:+90804184 | None:intergenic |
| CGTATGCTTTCCTTTCGCCA+TGG | 0.513545 | 3.1:+90806879 | None:intergenic |
| GATGCATCTAGTGTGGCATC+TGG | 0.515596 | 3.1:+90803329 | None:intergenic |
| ATTTATTTCCTACAATTACT+GGG | 0.516066 | 3.1:+90803027 | None:intergenic |
| TCTTAGTGTTGAACTCATCA+AGG | 0.522896 | 3.1:+90803642 | None:intergenic |
| CTGGAAAGAGTACAGAAAGC+AGG | 0.529807 | 3.1:-90804427 | MS.gene52808:intron |
| TTGTGATAGACGAAAGCTCT+AGG | 0.531458 | 3.1:+90806563 | None:intergenic |
| GTGGACTGAAATTCTTTCAT+GGG | 0.532971 | 3.1:-90806588 | MS.gene52808:CDS |
| AATTTCTTCACCGGTGAACG+TGG | 0.534743 | 3.1:+90806853 | None:intergenic |
| ATCTGTGATTAAAGAATCAT+CGG | 0.538500 | 3.1:+90806741 | None:intergenic |
| TTATCTGAATGTGCTAGAAA+GGG | 0.543737 | 3.1:-90803404 | MS.gene52808:CDS |
| AACGTCGATAATTTCTTCAC+CGG | 0.549802 | 3.1:+90806844 | None:intergenic |
| GGTTCTTCACTATGGAGTTG+GGG | 0.555410 | 3.1:-90803693 | MS.gene52808:CDS |
| CCATGGCACAGAACTAAAGT+TGG | 0.560278 | 3.1:+90803436 | None:intergenic |
| GCATACGCATCCACGTTCAC+CGG | 0.560833 | 3.1:-90806863 | MS.gene52808:CDS |
| CTAGATGCATCCAGTTTACA+CGG | 0.571154 | 3.1:-90803317 | MS.gene52808:intron |
| TCAGGAATGTTTCTGAAGAG+AGG | 0.571415 | 3.1:-90804254 | MS.gene52808:CDS |
| TCAAGGAAGTAATCATAATG+AGG | 0.573011 | 3.1:+90803659 | None:intergenic |
| AATTTCAAAACCATGGCGAA+AGG | 0.592392 | 3.1:-90806889 | None:intergenic |
| TAAGAACTGTTGCAACTCGT+TGG | 0.593280 | 3.1:+90803612 | None:intergenic |
| AAATATGCAGAGAATGGGGA+GGG | 0.595346 | 3.1:-90803722 | MS.gene52808:intron |
| CCAACTTTAGTTCTGTGCCA+TGG | 0.601374 | 3.1:-90803436 | MS.gene52808:CDS |
| TAAATATGCAGAGAATGGGG+AGG | 0.604063 | 3.1:-90803723 | MS.gene52808:intron |
| AACAAAGTGGATGCATCTTG+AGG | 0.607113 | 3.1:-90802997 | MS.gene52808:CDS |
| ATCGACGCAAAATCTATGAA+AGG | 0.610874 | 3.1:-90806720 | MS.gene52808:intron |
| AATGTTTCTGAAGAGAGGAA+AGG | 0.618883 | 3.1:-90804249 | MS.gene52808:CDS |
| TGGAATTGGTTTCAGTCCGG+CGG | 0.622476 | 3.1:-90806624 | MS.gene52808:intron |
| AAATTATCCAGAATATTGAA+AGG | 0.636890 | 3.1:-90804223 | MS.gene52808:CDS |
| ATAAATGGTCTGCAACAAAG+TGG | 0.639282 | 3.1:-90803010 | MS.gene52808:CDS |
| GAGTTCAACACTAAGAATGG+AGG | 0.669587 | 3.1:-90803635 | MS.gene52808:CDS |
| ACTTTAGTTCTGTGCCATGG+TGG | 0.671859 | 3.1:-90803433 | MS.gene52808:CDS |
| CGGCGGAAAAGAAGGAACAG+TGG | 0.698387 | 3.1:-90806607 | MS.gene52808:CDS |
| AGGTCTGACGTTGAAGAAGG+CGG | 0.698975 | 3.1:-90803485 | MS.gene52808:CDS |
| TAAACTGGATGCATCTAGTG+TGG | 0.703325 | 3.1:+90803322 | None:intergenic |
| TCAGATAAATCATTCCACCA+TGG | 0.719207 | 3.1:+90803419 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATACTAATAAAATTGA+AGG | - | chr3.1:90804510-90804529 | MS.gene52808:intron | 10.0% |
| !!! | AATTTGTTAATTTGTTAATT+GGG | + | chr3.1:90804609-90804628 | None:intergenic | 10.0% |
| !! | AAAAAATGATCTACAATTAT+TGG | + | chr3.1:90805493-90805512 | None:intergenic | 15.0% |
| !! | ATATTCTAAATTCACAATTT+AGG | + | chr3.1:90803556-90803575 | None:intergenic | 15.0% |
| !!! | GAATTTGTTAATTTGTTAAT+TGG | + | chr3.1:90804610-90804629 | None:intergenic | 15.0% |
| !! | AAATGCTTATATGAATGATT+AGG | - | chr3.1:90803586-90803605 | MS.gene52808:intron | 20.0% |
| !! | AAATTATCCAGAATATTGAA+AGG | - | chr3.1:90805637-90805656 | MS.gene52808:intron | 20.0% |
| !! | ATTAATTTATCTTTGCTTTC+AGG | - | chr3.1:90806804-90806823 | MS.gene52808:CDS | 20.0% |
| !! | ATTCATTAAATCAGAAAGAA+AGG | - | chr3.1:90804127-90804146 | MS.gene52808:intron | 20.0% |
| !! | ATTTATTTCCTACAATTACT+GGG | + | chr3.1:90806836-90806855 | None:intergenic | 20.0% |
| !! | CAAAACATTAACAATTAACA+AGG | - | chr3.1:90804576-90804595 | MS.gene52808:intron | 20.0% |
| !!! | AGTGACTTTTATTTCAAATT+AGG | + | chr3.1:90804459-90804478 | None:intergenic | 20.0% |
| !!! | TAGTTTTTGTTATCTTTTCA+TGG | - | chr3.1:90803329-90803348 | MS.gene52808:CDS | 20.0% |
| !!! | TGAATTTTGAGTAATGTTAA+AGG | + | chr3.1:90804427-90804446 | None:intergenic | 20.0% |
| !!! | TTTATTTTTGACAAACACAT+AGG | + | chr3.1:90806042-90806061 | None:intergenic | 20.0% |
| ! | AAGTTATGGAAAGAGAATAA+GGG | + | chr3.1:90806286-90806305 | None:intergenic | 25.0% |
| ! | ACAAAAAAAAACTCAAGCAA+AGG | + | chr3.1:90805463-90805482 | None:intergenic | 25.0% |
| ! | AGAAAACAGAAAACTAACTA+TGG | + | chr3.1:90803818-90803837 | None:intergenic | 25.0% |
| ! | AGTTTCATGAGTTTAGATTT+GGG | + | chr3.1:90805993-90806012 | None:intergenic | 25.0% |
| ! | ATAATATCAATCAATCGCAA+TGG | - | chr3.1:90803624-90803643 | MS.gene52808:CDS | 25.0% |
| ! | ATCTGTGATTAAAGAATCAT+CGG | + | chr3.1:90803122-90803141 | None:intergenic | 25.0% |
| ! | ATGACTCAAATTCAAACAAT+CGG | + | chr3.1:90803915-90803934 | None:intergenic | 25.0% |
| ! | CAGTAATTGTAGGAAATAAA+TGG | - | chr3.1:90806835-90806854 | MS.gene52808:CDS | 25.0% |
| ! | CATTTATTTCCTACAATTAC+TGG | + | chr3.1:90806837-90806856 | None:intergenic | 25.0% |
| ! | CTCATGAAACAGTAAATTTA+AGG | - | chr3.1:90805917-90805936 | MS.gene52808:intron | 25.0% |
| ! | GCTATAATATGTTCAACATA+AGG | + | chr3.1:90806721-90806740 | None:intergenic | 25.0% |
| ! | GGACTATTAAATACTTTAAC+TGG | - | chr3.1:90806570-90806589 | MS.gene52808:CDS | 25.0% |
| ! | TAAAAGAAAATCTAGGTACA+TGG | - | chr3.1:90805153-90805172 | MS.gene52808:intron | 25.0% |
| ! | TAAATTTACTGTTTCATGAG+AGG | + | chr3.1:90805917-90805936 | None:intergenic | 25.0% |
| ! | TAATATCAATCAATCGCAAT+GGG | - | chr3.1:90803625-90803644 | MS.gene52808:CDS | 25.0% |
| ! | TACATGGAATATTCAGATTA+TGG | - | chr3.1:90805169-90805188 | MS.gene52808:intron | 25.0% |
| ! | TATATGCAGCAACAAAAAAA+AGG | + | chr3.1:90805753-90805772 | None:intergenic | 25.0% |
| ! | TTCGTGATAAAAGAAAATCT+AGG | - | chr3.1:90805146-90805165 | MS.gene52808:intron | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | - | chr3.1:90803412-90803431 | MS.gene52808:CDS | 25.0% |
| !! | ACTTTTAAATATGCAGAGAA+TGG | - | chr3.1:90806132-90806151 | MS.gene52808:intron | 25.0% |
| !! | CTTTTAAATATGCAGAGAAT+GGG | - | chr3.1:90806133-90806152 | MS.gene52808:intron | 25.0% |
| !! | TGTAATTAAAACCGTTTTCA+GGG | + | chr3.1:90804797-90804816 | None:intergenic | 25.0% |
| !! | TTGTAATTAAAACCGTTTTC+AGG | + | chr3.1:90804798-90804817 | None:intergenic | 25.0% |
| !! | TTTTAAATATGCAGAGAATG+GGG | - | chr3.1:90806134-90806153 | MS.gene52808:intron | 25.0% |
| !!! | GCAATAATTAGTTTTCTGTT+TGG | + | chr3.1:90804241-90804260 | None:intergenic | 25.0% |
| !!! | GCTTGAGTTTTTTTTTGTAT+CGG | - | chr3.1:90805465-90805484 | MS.gene52808:intron | 25.0% |
| !!! | TTGTTAATTTGTTAATTGGG+AGG | + | chr3.1:90804606-90804625 | None:intergenic | 25.0% |
| !!! | TTTCGTCTATCACAATTTTT+TGG | - | chr3.1:90803305-90803324 | MS.gene52808:intron | 25.0% |
| !!! | TTTGTTACTTTAAGCTTTAG+AGG | + | chr3.1:90804552-90804571 | None:intergenic | 25.0% |
| AAAACAATGGAGAGAGAAAA+AGG | - | chr3.1:90803425-90803444 | MS.gene52808:CDS | 30.0% | |
| AAAGGAAGATACAACTTCTA+TGG | - | chr3.1:90804145-90804164 | MS.gene52808:intron | 30.0% | |
| AAGAACTTAGTCAGAAACAT+TGG | - | chr3.1:90805836-90805855 | MS.gene52808:intron | 30.0% | |
| AATAAGAAGTGAGAAAACCA+AGG | + | chr3.1:90803400-90803419 | None:intergenic | 30.0% | |
| AATGTAATGAGTTAGTGACA+TGG | + | chr3.1:90806743-90806762 | None:intergenic | 30.0% | |
| AATTTATCTTTGCTTTCAGG+CGG | - | chr3.1:90806807-90806826 | MS.gene52808:CDS | 30.0% | |
| ACTAAATTGTACGAAGATAG+AGG | - | chr3.1:90805110-90805129 | MS.gene52808:intron | 30.0% | |
| ATCGATTGTAACTACTAACT+AGG | - | chr3.1:90803786-90803805 | MS.gene52808:intron | 30.0% | |
| ATGATATTGCATATTCGTCA+AGG | - | chr3.1:90805032-90805051 | MS.gene52808:intron | 30.0% | |
| ATTCAAGGAGGTCAAAAAAT+AGG | + | chr3.1:90806655-90806674 | None:intergenic | 30.0% | |
| CAAACATATCTCATGATTCA+AGG | + | chr3.1:90806670-90806689 | None:intergenic | 30.0% | |
| CAAGTTATGGAAAGAGAATA+AGG | + | chr3.1:90806287-90806306 | None:intergenic | 30.0% | |
| CAATTCTCCTTTCAATATTC+TGG | + | chr3.1:90805647-90805666 | None:intergenic | 30.0% | |
| CAGTTTCATGAGTTTAGATT+TGG | + | chr3.1:90805994-90806013 | None:intergenic | 30.0% | |
| CTATCACTGAAACCAAAAAT+GGG | - | chr3.1:90806480-90806499 | MS.gene52808:intron | 30.0% | |
| CTTATTCTCTTTCCATAACT+TGG | - | chr3.1:90806285-90806304 | MS.gene52808:intron | 30.0% | |
| CTTCTAATTTCCAATGGAAT+TGG | + | chr3.1:90806766-90806785 | None:intergenic | 30.0% | |
| TACAAAAATGACCCTGAAAA+CGG | - | chr3.1:90804813-90804832 | MS.gene52808:intron | 30.0% | |
| TCAAAGCTTCTAATTTCCAA+TGG | + | chr3.1:90806772-90806791 | None:intergenic | 30.0% | |
| TCAAGAAAAGGTTTATGGAA+AGG | + | chr3.1:90805520-90805539 | None:intergenic | 30.0% | |
| TCAAGGAAGTAATCATAATG+AGG | + | chr3.1:90806204-90806223 | None:intergenic | 30.0% | |
| TCATTACATTCCAATTCCAT+TGG | - | chr3.1:90806753-90806772 | MS.gene52808:CDS | 30.0% | |
| TCGATTGTAACTACTAACTA+GGG | - | chr3.1:90803787-90803806 | MS.gene52808:intron | 30.0% | |
| TCTATCACTGAAACCAAAAA+TGG | - | chr3.1:90806479-90806498 | MS.gene52808:intron | 30.0% | |
| TGACTCAAATTCAAACAATC+GGG | + | chr3.1:90803914-90803933 | None:intergenic | 30.0% | |
| TTATCTGAATGTGCTAGAAA+GGG | - | chr3.1:90806456-90806475 | MS.gene52808:intron | 30.0% | |
| TTTATCTGAATGTGCTAGAA+AGG | - | chr3.1:90806455-90806474 | MS.gene52808:intron | 30.0% | |
| ! | AAAGAATCATCGGTTGTATT+AGG | + | chr3.1:90803112-90803131 | None:intergenic | 30.0% |
| ! | ACAATCGATTCTATTGTGTT+TGG | + | chr3.1:90803775-90803794 | None:intergenic | 30.0% |
| ! | ATTCTATTGTGTTTGGGATT+TGG | + | chr3.1:90803768-90803787 | None:intergenic | 30.0% |
| ! | CAATCGATTCTATTGTGTTT+GGG | + | chr3.1:90803774-90803793 | None:intergenic | 30.0% |
| ! | TATTTCATTGAAGTCTTGTG+TGG | - | chr3.1:90805273-90805292 | MS.gene52808:intron | 30.0% |
| ! | TGTTTGACGTTTGTACATTT+TGG | - | chr3.1:90806684-90806703 | MS.gene52808:intron | 30.0% |
| ! | TTTCTGTTTTCTCTTAGCAT+TGG | - | chr3.1:90803826-90803845 | MS.gene52808:intron | 30.0% |
| !! | TTGGTTTTCTCACTTCTTAT+TGG | - | chr3.1:90803399-90803418 | MS.gene52808:CDS | 30.0% |
| !!! | AACCACTTTTTGACAACTTT+TGG | + | chr3.1:90803492-90803511 | None:intergenic | 30.0% |
| !!! | ACATAGGTTTTAGAACTACT+TGG | + | chr3.1:90806026-90806045 | None:intergenic | 30.0% |
| !!! | GTTTGATTTTGATTCTGCTT+TGG | - | chr3.1:90803175-90803194 | MS.gene52808:intron | 30.0% |
| !!! | TAAACGGTTTTGGAATGAAT+AGG | - | chr3.1:90804095-90804114 | MS.gene52808:intron | 30.0% |
| !!! | TGTTTTGTTATTGTTGCTTC+TGG | - | chr3.1:90803216-90803235 | MS.gene52808:intron | 30.0% |
| AAAAAAAGGCTACGAGACAA+AGG | + | chr3.1:90805739-90805758 | None:intergenic | 35.0% | |
| AAAAAAGGCTACGAGACAAA+GGG | + | chr3.1:90805738-90805757 | None:intergenic | 35.0% | |
| AACGTCGATAATTTCTTCAC+CGG | + | chr3.1:90803019-90803038 | None:intergenic | 35.0% | |
| AAGATGAAAGCAAGATTCTC+AGG | - | chr3.1:90803989-90804008 | MS.gene52808:intron | 35.0% | |
| ACATATCTCATGATTCAAGG+AGG | + | chr3.1:90806667-90806686 | None:intergenic | 35.0% | |
| ACTCAAATTCAAACAATCGG+GGG | + | chr3.1:90803912-90803931 | None:intergenic | 35.0% | |
| AGATGAAAGCAAGATTCTCA+GGG | - | chr3.1:90803990-90804009 | MS.gene52808:intron | 35.0% | |
| AGCATAAAGTGGGAAAATGA+GGG | + | chr3.1:90803727-90803746 | None:intergenic | 35.0% | |
| AGTTTGAGAGTTAGATTAGC+TGG | + | chr3.1:90804186-90804205 | None:intergenic | 35.0% | |
| ATAAATGGTCTGCAACAAAG+TGG | - | chr3.1:90806850-90806869 | MS.gene52808:CDS | 35.0% | |
| ATCGACGCAAAATCTATGAA+AGG | - | chr3.1:90803140-90803159 | MS.gene52808:intron | 35.0% | |
| ATGTGAGCATTTGATCAATC+TGG | - | chr3.1:90805368-90805387 | MS.gene52808:intron | 35.0% | |
| CAAATGCTCACATTCTTCTT+TGG | + | chr3.1:90805361-90805380 | None:intergenic | 35.0% | |
| CTTGTAAAGTCTGTAAGCAT+AGG | - | chr3.1:90805072-90805091 | MS.gene52808:intron | 35.0% | |
| GACTCAAATTCAAACAATCG+GGG | + | chr3.1:90803913-90803932 | None:intergenic | 35.0% | |
| GATGAGTTCAACACTAAGAA+TGG | - | chr3.1:90806222-90806241 | MS.gene52808:intron | 35.0% | |
| GTCCAAAAGTTGTCAAAAAG+TGG | - | chr3.1:90803487-90803506 | MS.gene52808:intron | 35.0% | |
| GTCTCTCAAGAAAAGGTTTA+TGG | + | chr3.1:90805525-90805544 | None:intergenic | 35.0% | |
| GTTGTTCAAATTTCTCACCA+TGG | - | chr3.1:90803939-90803958 | MS.gene52808:intron | 35.0% | |
| TACAATCAAGAGATGAAGAG+AGG | - | chr3.1:90804667-90804686 | MS.gene52808:intron | 35.0% | |
| TCAGATAAATCATTCCACCA+TGG | + | chr3.1:90806444-90806463 | None:intergenic | 35.0% | |
| TCTCTTTCCATAACTTGGTT+TGG | - | chr3.1:90806290-90806309 | MS.gene52808:intron | 35.0% | |
| TTTCTGACTAAGTTCTTGAG+AGG | + | chr3.1:90805833-90805852 | None:intergenic | 35.0% | |
| TTTGGACTGTTCACAATGAT+AGG | + | chr3.1:90805343-90805362 | None:intergenic | 35.0% | |
| ! | AATGTTTCTGAAGAGAGGAA+AGG | - | chr3.1:90805611-90805630 | MS.gene52808:intron | 35.0% |
| ! | ACACTTGATTTTGCCAAGAA+AGG | + | chr3.1:90805399-90805418 | None:intergenic | 35.0% |
| ! | GATTTTACCTTCATACCAGT+AGG | - | chr3.1:90805669-90805688 | MS.gene52808:intron | 35.0% |
| ! | GTCACTTAAAACCGTTTTCA+GGG | + | chr3.1:90804775-90804794 | None:intergenic | 35.0% |
| ! | GTGGACTGAAATTCTTTCAT+GGG | - | chr3.1:90803272-90803291 | MS.gene52808:intron | 35.0% |
| ! | GTGTGAGAAATTTTCTCTGA+AGG | + | chr3.1:90804068-90804087 | None:intergenic | 35.0% |
| ! | GTTTGGTTGTTACTTCAGTA+AGG | + | chr3.1:90804224-90804243 | None:intergenic | 35.0% |
| ! | TATCTCAATGTGTCGGTAAT+TGG | - | chr3.1:90805890-90805909 | MS.gene52808:intron | 35.0% |
| ! | TCTTAGTGTTGAACTCATCA+AGG | + | chr3.1:90806221-90806240 | None:intergenic | 35.0% |
| ! | TTCCCTTAAAACCGTTTTCA+GGG | + | chr3.1:90804827-90804846 | None:intergenic | 35.0% |
| ! | TTTCCCTTAAAACCGTTTTC+AGG | + | chr3.1:90804828-90804847 | None:intergenic | 35.0% |
| !! | AGTGGACTGAAATTCTTTCA+TGG | - | chr3.1:90803271-90803290 | MS.gene52808:intron | 35.0% |
| !! | CATCAATTTGTTGACAACCT+TGG | - | chr3.1:90803380-90803399 | MS.gene52808:CDS | 35.0% |
| !! | GTTATTGTTGCTTCTGGAAT+TGG | - | chr3.1:90803222-90803241 | MS.gene52808:intron | 35.0% |
| !! | GTTTTAAGTGACCCTGAAAA+CGG | - | chr3.1:90804783-90804802 | MS.gene52808:intron | 35.0% |
| !!! | TTGTACATTTTGGTACTGAC+TGG | - | chr3.1:90806694-90806713 | MS.gene52808:intron | 35.0% |
| AAAGTCTGTAAGCATAGGCT+AGG | - | chr3.1:90805077-90805096 | MS.gene52808:intron | 40.0% | |
| AAATATGCAGAGAATGGGGA+GGG | - | chr3.1:90806138-90806157 | MS.gene52808:intron | 40.0% | |
| AACAAAGTGGATGCATCTTG+AGG | - | chr3.1:90806863-90806882 | MS.gene52808:CDS | 40.0% | |
| AAGATCTCCTACTCAAACTC+TGG | + | chr3.1:90805219-90805238 | None:intergenic | 40.0% | |
| AAGGTGAGTAGAGCATAAAG+TGG | + | chr3.1:90803738-90803757 | None:intergenic | 40.0% | |
| ACGAAGATAGAGGTTGTTCT+AGG | - | chr3.1:90805120-90805139 | MS.gene52808:intron | 40.0% | |
| ACTCATACCTACTGGTATGA+AGG | + | chr3.1:90805679-90805698 | None:intergenic | 40.0% | |
| AGAGATGATGAGATGAGAAG+AGG | - | chr3.1:90804748-90804767 | MS.gene52808:intron | 40.0% | |
| AGATATATCCCCTTCCTGTA+GGG | - | chr3.1:90805572-90805591 | MS.gene52808:intron | 40.0% | |
| AGGTGAGTAGAGCATAAAGT+GGG | + | chr3.1:90803737-90803756 | None:intergenic | 40.0% | |
| AGGTTCTTCACTATGGAGTT+GGG | - | chr3.1:90806166-90806185 | MS.gene52808:intron | 40.0% | |
| ATGGATGAGGAATGAAGAAC+TGG | + | chr3.1:90803876-90803895 | None:intergenic | 40.0% | |
| CAAACAACCAATCATGTAGC+TGG | + | chr3.1:90806088-90806107 | None:intergenic | 40.0% | |
| CAGAGAAAATTTCTCACACC+TGG | - | chr3.1:90804069-90804088 | MS.gene52808:intron | 40.0% | |
| CTACGTAAGGAGCAAAAAGA+GGG | + | chr3.1:90806357-90806376 | None:intergenic | 40.0% | |
| CTAGATGCATCCAGTTTACA+CGG | - | chr3.1:90806543-90806562 | MS.gene52808:intron | 40.0% | |
| CTCAAATTCAAACAATCGGG+GGG | + | chr3.1:90803911-90803930 | None:intergenic | 40.0% | |
| CTTGTGTGGTAGTAAACTGT+TGG | - | chr3.1:90805287-90805306 | MS.gene52808:intron | 40.0% | |
| GAAACTATCATGGATGGATG+AGG | + | chr3.1:90803889-90803908 | None:intergenic | 40.0% | |
| GAAGAGAGGAGAACAAAGAT+GGG | - | chr3.1:90804681-90804700 | MS.gene52808:intron | 40.0% | |
| GACAGTCTATCTCAATGTGT+CGG | - | chr3.1:90805883-90805902 | MS.gene52808:intron | 40.0% | |
| GAGCATAAAGTGGGAAAATG+AGG | + | chr3.1:90803728-90803747 | None:intergenic | 40.0% | |
| GAGTTCAACACTAAGAATGG+AGG | - | chr3.1:90806225-90806244 | MS.gene52808:intron | 40.0% | |
| GCACAAAAACTCATACCTAC+TGG | + | chr3.1:90805687-90805706 | None:intergenic | 40.0% | |
| TAAACTGGATGCATCTAGTG+TGG | + | chr3.1:90806541-90806560 | None:intergenic | 40.0% | |
| TAAATATGCAGAGAATGGGG+AGG | - | chr3.1:90806137-90806156 | MS.gene52808:intron | 40.0% | |
| TAAGAACTGTTGCAACTCGT+TGG | + | chr3.1:90806251-90806270 | None:intergenic | 40.0% | |
| TAAGACTCCAGAGTTTGAGT+AGG | - | chr3.1:90805209-90805228 | MS.gene52808:intron | 40.0% | |
| TAGATATATCCCCTTCCTGT+AGG | - | chr3.1:90805571-90805590 | MS.gene52808:intron | 40.0% | |
| TCTGTATCCAGCTACATGAT+TGG | - | chr3.1:90806078-90806097 | MS.gene52808:intron | 40.0% | |
| TGAAGAGAGGAGAACAAAGA+TGG | - | chr3.1:90804680-90804699 | MS.gene52808:intron | 40.0% | |
| TTGTGATAGACGAAAGCTCT+AGG | + | chr3.1:90803300-90803319 | None:intergenic | 40.0% | |
| TTTACTTTGATCGAGCTCCA+TGG | + | chr3.1:90803959-90803978 | None:intergenic | 40.0% | |
| ! | AAGATAGAGGTTGTTCTAGG+TGG | - | chr3.1:90805123-90805142 | MS.gene52808:intron | 40.0% |
| ! | AATCGCAATGGGTTCACTAA+TGG | - | chr3.1:90803636-90803655 | MS.gene52808:CDS | 40.0% |
| ! | AGTAGCTCTGTTGTCAATAG+AGG | + | chr3.1:90804962-90804981 | None:intergenic | 40.0% |
| ! | GACACTAGTCTCTCAAGAAA+AGG | + | chr3.1:90805532-90805551 | None:intergenic | 40.0% |
| ! | GGTCACTTAAAACCGTTTTC+AGG | + | chr3.1:90804776-90804795 | None:intergenic | 40.0% |
| ! | GGTTGTTACTTCAGTAAGGT+TGG | + | chr3.1:90804220-90804239 | None:intergenic | 40.0% |
| ! | TCAGGAATGTTTCTGAAGAG+AGG | - | chr3.1:90805606-90805625 | MS.gene52808:intron | 40.0% |
| ! | TGACCCTGAAAACGGTTTTA+AGG | - | chr3.1:90804791-90804810 | MS.gene52808:intron | 40.0% |
| ! | TGATTTTGCCAAGAAAGGCT+TGG | + | chr3.1:90805394-90805413 | None:intergenic | 40.0% |
| !! | GAAGAACTGGTTTGAGTTTG+TGG | + | chr3.1:90803863-90803882 | None:intergenic | 40.0% |
| !! | GACCCTGAAAACGGTTTTAA+GGG | - | chr3.1:90804770-90804789 | MS.gene52808:intron | 40.0% |
| !! | GCTTTAGAGGCTTAAAGTGT+TGG | + | chr3.1:90804539-90804558 | None:intergenic | 40.0% |
| !! | TTCTGGAATTGGTTTCAGTC+CGG | - | chr3.1:90803233-90803252 | MS.gene52808:intron | 40.0% |
| !! | TTTCTCTGAAGGTATCAGAG+CGG | + | chr3.1:90804057-90804076 | None:intergenic | 40.0% |
| AAAAGAGGGAGCTGTCAAGT+TGG | + | chr3.1:90806343-90806362 | None:intergenic | 45.0% | |
| AATTTCTTCACCGGTGAACG+TGG | + | chr3.1:90803010-90803029 | None:intergenic | 45.0% | |
| ATCATCCTTCTTCTTGCGCT+CGG | - | chr3.1:90803073-90803092 | MS.gene52808:intron | 45.0% | |
| CACACTGCCAAACCAAGTTA+TGG | + | chr3.1:90806300-90806319 | None:intergenic | 45.0% | |
| CAGGTTCTTCACTATGGAGT+TGG | - | chr3.1:90806165-90806184 | MS.gene52808:intron | 45.0% | |
| CATTTCCGCTTTGACAACAG+AGG | + | chr3.1:90804272-90804291 | None:intergenic | 45.0% | |
| CCATGGCACAGAACTAAAGT+TGG | + | chr3.1:90806427-90806446 | None:intergenic | 45.0% | |
| CCTACGTAAGGAGCAAAAAG+AGG | + | chr3.1:90806358-90806377 | None:intergenic | 45.0% | |
| CTGTTGTCAAAGCGGAAATG+CGG | - | chr3.1:90804272-90804291 | MS.gene52808:intron | 45.0% | |
| CTTGAGAGACTAGTGTCTAG+TGG | - | chr3.1:90805535-90805554 | MS.gene52808:intron | 45.0% | |
| GAGATGAGAAGAGGAGAGAT+GGG | - | chr3.1:90804714-90804733 | MS.gene52808:intron | 45.0% | |
| GCATCCAGTTTACACGGTTA+GGG | - | chr3.1:90806549-90806568 | MS.gene52808:intron | 45.0% | |
| GGTTCTTCACTATGGAGTTG+GGG | - | chr3.1:90806167-90806186 | MS.gene52808:intron | 45.0% | |
| GTAGCTGGATACAGAGTGAT+TGG | + | chr3.1:90806073-90806092 | None:intergenic | 45.0% | |
| GTTACTTCAGTAAGGTTGGC+TGG | + | chr3.1:90804216-90804235 | None:intergenic | 45.0% | |
| TAGTCCCTAACCGTGTAAAC+TGG | + | chr3.1:90806556-90806575 | None:intergenic | 45.0% | |
| TAGTTCGAACCCTACAGGAA+GGG | + | chr3.1:90805584-90805603 | None:intergenic | 45.0% | |
| TCACACCTCTGTTGTCAAAG+CGG | - | chr3.1:90804264-90804283 | MS.gene52808:CDS | 45.0% | |
| TCTGCAGATGAGATGAGAAG+AGG | - | chr3.1:90804705-90804724 | MS.gene52808:intron | 45.0% | |
| TGAACTAGTTCGAACCCTAC+AGG | + | chr3.1:90805589-90805608 | None:intergenic | 45.0% | |
| TGAGAAGAGGACCCTGAAAA+CGG | - | chr3.1:90804761-90804780 | MS.gene52808:intron | 45.0% | |
| TGAGATGAGAAGAGGAGAGA+TGG | - | chr3.1:90804713-90804732 | MS.gene52808:intron | 45.0% | |
| TGCATCCAGTTTACACGGTT+AGG | - | chr3.1:90806548-90806567 | MS.gene52808:intron | 45.0% | |
| TGTAGGGTTCGAACTAGTTC+AGG | - | chr3.1:90805588-90805607 | MS.gene52808:intron | 45.0% | |
| TGTGCTTCAGCAACACTGTT+AGG | + | chr3.1:90804023-90804042 | None:intergenic | 45.0% | |
| TTATGCTCTACTCACCTTCG+AGG | - | chr3.1:90803740-90803759 | MS.gene52808:intron | 45.0% | |
| TTCAACGTCAGACCTACGTA+AGG | + | chr3.1:90806370-90806389 | None:intergenic | 45.0% | |
| TTCCAAAACCGTTTAGCACC+AGG | + | chr3.1:90804090-90804109 | None:intergenic | 45.0% | |
| TTGTCAATAGAGGCCACTAC+TGG | + | chr3.1:90804952-90804971 | None:intergenic | 45.0% | |
| TTTGGCAGTGTGCTTTGTGA+TGG | - | chr3.1:90806308-90806327 | MS.gene52808:intron | 45.0% | |
| ! | CCTCTTTTTGCTCCTTACGT+AGG | - | chr3.1:90806355-90806374 | MS.gene52808:intron | 45.0% |
| ! | CTGGAAAGAGTACAGAAAGC+AGG | - | chr3.1:90805433-90805452 | MS.gene52808:intron | 45.0% |
| ! | GGACTTCAGGTTCTTCACTA+TGG | - | chr3.1:90806159-90806178 | MS.gene52808:intron | 45.0% |
| ! | TTCTCACACCTGGTGCTAAA+CGG | - | chr3.1:90804079-90804098 | MS.gene52808:intron | 45.0% |
| ! | TTTGGGATTTGGATCCTCGA+AGG | + | chr3.1:90803757-90803776 | None:intergenic | 45.0% |
| !! | ACTTTAGTTCTGTGCCATGG+TGG | - | chr3.1:90806427-90806446 | MS.gene52808:intron | 45.0% |
| !! | AGCAGAGCATCACCCATTTT+TGG | + | chr3.1:90806495-90806514 | None:intergenic | 45.0% |
| !! | CCAACTTTAGTTCTGTGCCA+TGG | - | chr3.1:90806424-90806443 | MS.gene52808:intron | 45.0% |
| !! | TTCTCTGAAGGTATCAGAGC+GGG | + | chr3.1:90804056-90804075 | None:intergenic | 45.0% |
| !!! | GCGTCGCGTTTTACTGATTT+TGG | - | chr3.1:90804916-90804935 | MS.gene52808:intron | 45.0% |
| ACAAAGGGAAAGAGGCAAGC+AGG | + | chr3.1:90805723-90805742 | None:intergenic | 50.0% | |
| AGGTCTGACGTTGAAGAAGG+CGG | - | chr3.1:90806375-90806394 | MS.gene52808:intron | 50.0% | |
| AGTGTCGTCGATAGCAAGAC+TGG | - | chr3.1:90805414-90805433 | MS.gene52808:intron | 50.0% | |
| AGTTCGAACCCTACAGGAAG+GGG | + | chr3.1:90805583-90805602 | None:intergenic | 50.0% | |
| CAATCGGGGGGAAACTATCA+TGG | + | chr3.1:90803899-90803918 | None:intergenic | 50.0% | |
| CAATCTGGCCAAGCCTTTCT+TGG | - | chr3.1:90805383-90805402 | MS.gene52808:intron | 50.0% | |
| CGTAGGTCTGACGTTGAAGA+AGG | - | chr3.1:90806372-90806391 | MS.gene52808:intron | 50.0% | |
| CTAGTTCGAACCCTACAGGA+AGG | + | chr3.1:90805585-90805604 | None:intergenic | 50.0% | |
| GACCGTATTTCCTGCTGCTA+AGG | - | chr3.1:90806401-90806420 | MS.gene52808:intron | 50.0% | |
| GATGCATCTAGTGTGGCATC+TGG | + | chr3.1:90806534-90806553 | None:intergenic | 50.0% | |
| GCTACGAGACAAAGGGAAAG+AGG | + | chr3.1:90805731-90805750 | None:intergenic | 50.0% | |
| GGCCTTAGCAGCAGGAAATA+CGG | + | chr3.1:90806406-90806425 | None:intergenic | 50.0% | |
| GTAAGCATAGGCTAGGCTCA+TGG | - | chr3.1:90805084-90805103 | MS.gene52808:intron | 50.0% | |
| GTATTCCGAGCGCAAGAAGA+AGG | + | chr3.1:90803081-90803100 | None:intergenic | 50.0% | |
| TTTCAGTCCGGCGGAAAAGA+AGG | - | chr3.1:90803245-90803264 | MS.gene52808:intron | 50.0% | |
| TTTCTCCAAATGCTCCGCCT+TGG | - | chr3.1:90804887-90804906 | MS.gene52808:intron | 50.0% | |
| TTTGGAGAAAGCGGCTGAAG+CGG | + | chr3.1:90804877-90804896 | None:intergenic | 50.0% | |
| ! | CACTGTTCCTTCTTTTCCGC+CGG | + | chr3.1:90803255-90803274 | None:intergenic | 50.0% |
| ! | CAGTGTTGCTGAAGCACAAC+AGG | - | chr3.1:90804025-90804044 | MS.gene52808:intron | 50.0% |
| ! | TGGAATTGGTTTCAGTCCGG+CGG | - | chr3.1:90803236-90803255 | MS.gene52808:intron | 50.0% |
| !! | CACCTGGTGCTAAACGGTTT+TGG | - | chr3.1:90804085-90804104 | MS.gene52808:intron | 50.0% |
| !! | CTAAAGTTGGCCTTAGCAGC+AGG | + | chr3.1:90806414-90806433 | None:intergenic | 50.0% |
| !! | TGGGTGATGCTCTGCTGTTT+TGG | - | chr3.1:90806499-90806518 | MS.gene52808:intron | 50.0% |
| !!! | CTCTGCTGTTTTGGAGCATG+AGG | - | chr3.1:90806508-90806527 | MS.gene52808:intron | 50.0% |
| ACGCGTAGCAGGCGCTATTT+CGG | - | chr3.1:90804338-90804357 | MS.gene52808:intron | 55.0% | |
| AGAGAATGGGGAGGGACTTC+AGG | - | chr3.1:90806146-90806165 | MS.gene52808:intron | 55.0% | |
| CCCAAAAATTGACGTGGCGC+GGG | - | chr3.1:90804309-90804328 | MS.gene52808:intron | 55.0% | |
| CCCCAAAAATTGACGTGGCG+CGG | - | chr3.1:90804308-90804327 | MS.gene52808:intron | 55.0% | |
| CGGCGGAAAAGAAGGAACAG+TGG | - | chr3.1:90803253-90803272 | MS.gene52808:intron | 55.0% | |
| CGGGGGGAAACTATCATGGA+TGG | + | chr3.1:90803895-90803914 | None:intergenic | 55.0% | |
| GCATACGCATCCACGTTCAC+CGG | - | chr3.1:90802997-90803016 | MS.gene52808:CDS | 55.0% | |
| GGCCACCCCAAAAATTGACG+TGG | - | chr3.1:90804303-90804322 | MS.gene52808:intron | 55.0% | |
| GGCGGTTGCCCAGTAATTGT+AGG | - | chr3.1:90806825-90806844 | MS.gene52808:CDS | 55.0% | |
| GTCAAAGCGGAAATGCGGTG+TGG | - | chr3.1:90804277-90804296 | MS.gene52808:intron | 55.0% | |
| TTGGAGAAAGCGGCTGAAGC+GGG | + | chr3.1:90804876-90804895 | None:intergenic | 55.0% | |
| ! | CCCGCGCCACGTCAATTTTT+GGG | + | chr3.1:90804312-90804331 | None:intergenic | 55.0% |
| ! | CCGCGCCACGTCAATTTTTG+GGG | + | chr3.1:90804311-90804330 | None:intergenic | 55.0% |
| ! | GGCGGAGCATTTGGAGAAAG+CGG | + | chr3.1:90804886-90804905 | None:intergenic | 55.0% |
| ! | TCCCGCGCCACGTCAATTTT+TGG | + | chr3.1:90804313-90804332 | None:intergenic | 55.0% |
| !! | CGCCACGTCAATTTTTGGGG+TGG | + | chr3.1:90804308-90804327 | None:intergenic | 55.0% |
| AATTGACGTGGCGCGGGATG+CGG | - | chr3.1:90804315-90804334 | MS.gene52808:intron | 60.0% | |
| AGCGGAAATGCGGTGTGGCA+CGG | - | chr3.1:90804282-90804301 | MS.gene52808:intron | 60.0% | |
| ! | CGTAGCAGGCGCTATTTCGG+TGG | - | chr3.1:90804341-90804360 | MS.gene52808:intron | 60.0% |
| AAACGCGACGCAGCGCTCCA+AGG | + | chr3.1:90804907-90804926 | None:intergenic | 65.0% | |
| AGGCCACTACTGGCGCAGAG+CGG | + | chr3.1:90804942-90804961 | None:intergenic | 65.0% | |
| ! | GCGCTCCAAGGCGGAGCATT+TGG | + | chr3.1:90804895-90804914 | None:intergenic | 65.0% |
| TGGCCGCTCTGCGCCAGTAG+TGG | - | chr3.1:90804936-90804955 | MS.gene52808:intron | 70.0% | |
| CGCGACGCAGCGCTCCAAGG+CGG | + | chr3.1:90804904-90804923 | None:intergenic | 75.0% | |
| GCGGGATGCGGACGCGTAGC+AGG | - | chr3.1:90804327-90804346 | MS.gene52808:intron | 75.0% | |
| GGCTGAAGCGGGCGCGATGC+AGG | + | chr3.1:90804865-90804884 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 90802983 | 90806899 | 90802983 | ID=MS.gene52808 |
| chr3.1 | mRNA | 90802983 | 90806899 | 90802983 | ID=MS.gene52808.t1;Parent=MS.gene52808 |
| chr3.1 | exon | 90806721 | 90806899 | 90806721 | ID=MS.gene52808.t1.exon1;Parent=MS.gene52808.t1 |
| chr3.1 | CDS | 90806721 | 90806899 | 90806721 | ID=cds.MS.gene52808.t1;Parent=MS.gene52808.t1 |
| chr3.1 | exon | 90806556 | 90806631 | 90806556 | ID=MS.gene52808.t1.exon2;Parent=MS.gene52808.t1 |
| chr3.1 | CDS | 90806556 | 90806631 | 90806556 | ID=cds.MS.gene52808.t1;Parent=MS.gene52808.t1 |
| chr3.1 | exon | 90804428 | 90804525 | 90804428 | ID=MS.gene52808.t1.exon3;Parent=MS.gene52808.t1 |
| chr3.1 | CDS | 90804428 | 90804525 | 90804428 | ID=cds.MS.gene52808.t1;Parent=MS.gene52808.t1 |
| chr3.1 | exon | 90804192 | 90804289 | 90804192 | ID=MS.gene52808.t1.exon4;Parent=MS.gene52808.t1 |
| chr3.1 | CDS | 90804192 | 90804289 | 90804192 | ID=cds.MS.gene52808.t1;Parent=MS.gene52808.t1 |
| chr3.1 | exon | 90803605 | 90803734 | 90803605 | ID=MS.gene52808.t1.exon5;Parent=MS.gene52808.t1 |
| chr3.1 | CDS | 90803605 | 90803734 | 90803605 | ID=cds.MS.gene52808.t1;Parent=MS.gene52808.t1 |
| chr3.1 | exon | 90803318 | 90803505 | 90803318 | ID=MS.gene52808.t1.exon6;Parent=MS.gene52808.t1 |
| chr3.1 | CDS | 90803318 | 90803505 | 90803318 | ID=cds.MS.gene52808.t1;Parent=MS.gene52808.t1 |
| chr3.1 | exon | 90802983 | 90803056 | 90802983 | ID=MS.gene52808.t1.exon7;Parent=MS.gene52808.t1 |
| chr3.1 | CDS | 90802983 | 90803056 | 90802983 | ID=cds.MS.gene52808.t1;Parent=MS.gene52808.t1 |
| Gene Sequence |
| Protein sequence |
