Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52946.t1 | XP_013468732.1 | 99.3 | 147 | 1 | 0 | 1 | 147 | 1 | 147 | 1.00E-74 | 289.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52946.t1 | Q8SAG3 | 79.6 | 147 | 26 | 1 | 1 | 147 | 1 | 143 | 9.4e-61 | 234.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52946.t1 | A0A072VL70 | 99.3 | 147 | 1 | 0 | 1 | 147 | 1 | 147 | 7.4e-75 | 289.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049340 | MS.gene52946 | 0.804108 | 2.53E-49 | -1.69E-46 |
MS.gene049341 | MS.gene52946 | 0.834187 | 3.46E-56 | -1.69E-46 |
MS.gene049808 | MS.gene52946 | 0.837001 | 6.72E-57 | -1.69E-46 |
MS.gene049825 | MS.gene52946 | 0.805062 | 1.60E-49 | -1.69E-46 |
MS.gene050807 | MS.gene52946 | 0.801124 | 1.04E-48 | -1.69E-46 |
MS.gene051719 | MS.gene52946 | 0.813381 | 2.63E-51 | -1.69E-46 |
MS.gene051746 | MS.gene52946 | 0.809342 | 1.98E-50 | -1.69E-46 |
MS.gene052133 | MS.gene52946 | 0.82641 | 2.76E-54 | -1.69E-46 |
MS.gene052879 | MS.gene52946 | 0.818582 | 1.82E-52 | -1.69E-46 |
MS.gene052947 | MS.gene52946 | 0.823614 | 1.26E-53 | -1.69E-46 |
MS.gene053597 | MS.gene52946 | 0.824547 | 7.61E-54 | -1.69E-46 |
MS.gene053599 | MS.gene52946 | 0.825388 | 4.82E-54 | -1.69E-46 |
MS.gene053678 | MS.gene52946 | 0.818555 | 1.84E-52 | -1.69E-46 |
MS.gene054250 | MS.gene52946 | 0.806234 | 9.08E-50 | -1.69E-46 |
MS.gene055468 | MS.gene52946 | 0.800427 | 1.45E-48 | -1.69E-46 |
MS.gene055555 | MS.gene52946 | 0.822133 | 2.79E-53 | -1.69E-46 |
MS.gene055580 | MS.gene52946 | -0.812764 | 3.60E-51 | -1.69E-46 |
MS.gene055891 | MS.gene52946 | 0.83178 | 1.37E-55 | -1.69E-46 |
MS.gene056043 | MS.gene52946 | -0.808948 | 2.41E-50 | -1.69E-46 |
MS.gene056075 | MS.gene52946 | 0.823965 | 1.04E-53 | -1.69E-46 |
MS.gene057287 | MS.gene52946 | 0.801071 | 1.07E-48 | -1.69E-46 |
MS.gene057705 | MS.gene52946 | 0.818528 | 1.87E-52 | -1.69E-46 |
MS.gene058852 | MS.gene52946 | 0.818163 | 2.26E-52 | -1.69E-46 |
MS.gene058906 | MS.gene52946 | 0.800106 | 1.68E-48 | -1.69E-46 |
MS.gene059015 | MS.gene52946 | 0.803163 | 3.97E-49 | -1.69E-46 |
MS.gene05954 | MS.gene52946 | 0.802972 | 4.35E-49 | -1.69E-46 |
MS.gene06001 | MS.gene52946 | 0.820936 | 5.27E-53 | -1.69E-46 |
MS.gene060587 | MS.gene52946 | 0.809861 | 1.54E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52946.t1 | MTR_1g076170 | 99.320 | 147 | 1 | 0 | 1 | 147 | 1 | 147 | 1.46e-108 | 305 |
MS.gene52946.t1 | MTR_7g096890 | 78.912 | 147 | 30 | 1 | 1 | 147 | 1 | 146 | 2.23e-86 | 249 |
MS.gene52946.t1 | MTR_1g068950 | 62.319 | 138 | 52 | 0 | 10 | 147 | 2 | 139 | 1.82e-66 | 198 |
MS.gene52946.t1 | MTR_4g073590 | 61.644 | 146 | 50 | 1 | 1 | 146 | 3 | 142 | 3.79e-66 | 197 |
MS.gene52946.t1 | MTR_5g010430 | 61.314 | 137 | 51 | 1 | 10 | 146 | 4 | 138 | 1.23e-63 | 191 |
MS.gene52946.t1 | MTR_8g098470 | 60.584 | 137 | 52 | 1 | 10 | 146 | 2 | 136 | 1.48e-61 | 186 |
MS.gene52946.t1 | MTR_2g028670 | 55.797 | 138 | 61 | 0 | 10 | 147 | 2 | 139 | 1.14e-58 | 179 |
MS.gene52946.t1 | MTR_8g088210 | 55.072 | 138 | 62 | 0 | 10 | 147 | 2 | 139 | 6.67e-56 | 172 |
MS.gene52946.t1 | MTR_1g101190 | 58.394 | 137 | 55 | 1 | 10 | 146 | 463 | 597 | 5.48e-55 | 182 |
MS.gene52946.t1 | MTR_8g088210 | 54.545 | 132 | 60 | 0 | 16 | 147 | 1 | 132 | 3.43e-52 | 162 |
MS.gene52946.t1 | MTR_4g073590 | 58.416 | 101 | 36 | 1 | 1 | 101 | 3 | 97 | 3.17e-40 | 131 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52946.t1 | AT2G31200 | 76.190 | 147 | 34 | 1 | 1 | 147 | 1 | 146 | 6.42e-82 | 238 |
MS.gene52946.t1 | AT5G59890 | 61.594 | 138 | 53 | 0 | 10 | 147 | 2 | 139 | 2.89e-65 | 195 |
MS.gene52946.t1 | AT3G46010 | 57.931 | 145 | 61 | 0 | 3 | 147 | 6 | 150 | 8.31e-65 | 194 |
MS.gene52946.t1 | AT4G00680 | 58.042 | 143 | 60 | 0 | 5 | 147 | 7 | 149 | 1.27e-64 | 194 |
MS.gene52946.t1 | AT3G46010 | 60.145 | 138 | 55 | 0 | 10 | 147 | 2 | 139 | 2.34e-64 | 193 |
MS.gene52946.t1 | AT4G00680 | 58.696 | 138 | 57 | 0 | 10 | 147 | 2 | 139 | 4.93e-64 | 192 |
MS.gene52946.t1 | AT1G01750 | 58.696 | 138 | 57 | 0 | 10 | 147 | 2 | 139 | 1.87e-63 | 191 |
MS.gene52946.t1 | AT1G01750 | 58.696 | 138 | 57 | 0 | 10 | 147 | 7 | 144 | 2.09e-63 | 191 |
MS.gene52946.t1 | AT2G16700 | 58.503 | 147 | 55 | 1 | 1 | 147 | 3 | 143 | 2.93e-63 | 190 |
MS.gene52946.t1 | AT4G25590 | 62.774 | 137 | 49 | 1 | 10 | 146 | 2 | 136 | 3.51e-63 | 190 |
MS.gene52946.t1 | AT3G46000 | 60.870 | 138 | 52 | 1 | 10 | 147 | 2 | 137 | 2.57e-62 | 188 |
MS.gene52946.t1 | AT3G46000 | 60.870 | 138 | 52 | 1 | 10 | 147 | 21 | 156 | 3.61e-62 | 188 |
MS.gene52946.t1 | AT5G59890 | 61.364 | 132 | 51 | 0 | 16 | 147 | 1 | 132 | 2.07e-61 | 185 |
MS.gene52946.t1 | AT5G59890 | 61.364 | 132 | 51 | 0 | 16 | 147 | 1 | 132 | 2.07e-61 | 185 |
MS.gene52946.t1 | AT2G16700 | 61.364 | 132 | 51 | 0 | 16 | 147 | 1 | 132 | 1.08e-60 | 183 |
MS.gene52946.t1 | AT2G16700 | 61.364 | 132 | 51 | 0 | 16 | 147 | 1 | 132 | 1.08e-60 | 183 |
MS.gene52946.t1 | AT4G34970 | 58.394 | 137 | 57 | 0 | 11 | 147 | 5 | 141 | 1.92e-60 | 183 |
MS.gene52946.t1 | AT5G52360 | 61.314 | 137 | 51 | 1 | 10 | 146 | 2 | 136 | 4.43e-60 | 182 |
MS.gene52946.t1 | AT4G25590 | 62.595 | 131 | 47 | 1 | 16 | 146 | 1 | 129 | 1.66e-59 | 181 |
MS.gene52946.t1 | AT5G59880 | 55.797 | 138 | 61 | 0 | 10 | 147 | 2 | 139 | 2.69e-59 | 180 |
MS.gene52946.t1 | AT3G46000 | 60.606 | 132 | 50 | 1 | 16 | 147 | 1 | 130 | 1.29e-58 | 178 |
MS.gene52946.t1 | AT5G59880 | 48.551 | 138 | 56 | 1 | 10 | 147 | 2 | 124 | 3.37e-46 | 146 |
MS.gene52946.t1 | AT2G16700 | 50.427 | 117 | 51 | 2 | 1 | 117 | 3 | 112 | 9.26e-37 | 122 |
MS.gene52946.t1 | AT3G45990 | 42.754 | 138 | 68 | 3 | 16 | 147 | 1 | 133 | 2.32e-34 | 117 |
Find 30 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGTAGGGAAATGCATCTTC+TGG | 0.261866 | 1.1:+56944016 | MS.gene52946:intron |
GCAGAGCGTAAGCACATTTC+AGG | 0.286465 | 1.1:+56944054 | MS.gene52946:CDS |
GGGAATCCACTATGAGATTC+AGG | 0.356002 | 1.1:+56946048 | MS.gene52946:CDS |
CAGGTTCAGAAGGGAGCTGC+AGG | 0.400251 | 1.1:+56946027 | MS.gene52946:CDS |
GCTTTCAGAGTGGGAGTTGG+AGG | 0.419649 | 1.1:+56942669 | MS.gene52946:CDS |
GTGATTAGTTCGCACGCTCC+TGG | 0.421098 | 1.1:-56946105 | None:intergenic |
GATGTAGCATAAAGCATCTT+CGG | 0.454388 | 1.1:-56945998 | None:intergenic |
ACTTCGAGTTCCATCTCTGT+TGG | 0.461999 | 1.1:-56946079 | None:intergenic |
CTTCGAGTTCCATCTCTGTT+GGG | 0.469550 | 1.1:-56946078 | None:intergenic |
TGTAGGGAAATGCATCTTCT+GGG | 0.504974 | 1.1:+56944017 | MS.gene52946:intron |
CTTTCAGAGTGGGAGTTGGA+GGG | 0.516133 | 1.1:+56942670 | MS.gene52946:CDS |
ATGGCTTTCAGAGTGGGAGT+TGG | 0.530306 | 1.1:+56942666 | MS.gene52946:CDS |
TTTCAGAGTGGGAGTTGGAG+GGG | 0.532929 | 1.1:+56942671 | MS.gene52946:CDS |
ATAGCTATGGCTTTCAGAGT+GGG | 0.535262 | 1.1:+56942660 | None:intergenic |
GGGAAATGCATCTTCTGGGA+TGG | 0.538512 | 1.1:+56944021 | MS.gene52946:intron |
CATCAAAGGACAGGTTCAGA+AGG | 0.548452 | 1.1:+56946017 | MS.gene52946:CDS |
GGAAATGCATCTTCTGGGAT+GGG | 0.555903 | 1.1:+56944022 | MS.gene52946:CDS |
GGCAACAGACCCAACAGAGA+TGG | 0.557284 | 1.1:+56946069 | MS.gene52946:CDS |
GATGGAACTCGAAGTCCTCC+AGG | 0.560122 | 1.1:+56946087 | MS.gene52946:CDS |
AAATCATCATAGCTCTCAGA+AGG | 0.561770 | 1.1:-56944163 | None:intergenic |
GGACGAATACGAGCTACAGA+AGG | 0.568172 | 1.1:-56945977 | None:intergenic |
CATAGCTATGGCTTTCAGAG+TGG | 0.573358 | 1.1:+56942659 | None:intergenic |
CTGTTGCCTGAATCTCATAG+TGG | 0.585469 | 1.1:-56946054 | None:intergenic |
TTTATGCTACATCAAAGGAC+AGG | 0.592719 | 1.1:+56946008 | MS.gene52946:CDS |
GATGCTTTATGCTACATCAA+AGG | 0.601779 | 1.1:+56946003 | MS.gene52946:CDS |
ATCAAAGGACAGGTTCAGAA+GGG | 0.621100 | 1.1:+56946018 | MS.gene52946:CDS |
GCACATTTCAGGAATTGCAG+AGG | 0.661602 | 1.1:+56944065 | MS.gene52946:CDS |
ATTAGTTCGCACGCTCCTGG+AGG | 0.663424 | 1.1:-56946102 | None:intergenic |
AGGTTCAGAAGGGAGCTGCA+GGG | 0.689968 | 1.1:+56946028 | MS.gene52946:CDS |
AATCATCATAGCTCTCAGAA+GGG | 0.724970 | 1.1:-56944162 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAACATGATTGAAAAATATA+TGG | - | chr1.1:56942913-56942932 | None:intergenic | 15.0% |
!! | AACACAAAAATGAATAAAAA+AGG | - | chr1.1:56945543-56945562 | None:intergenic | 15.0% |
!!! | ATTTGAATAAAATTTTCTGA+GGG | + | chr1.1:56943099-56943118 | MS.gene52946:intron | 15.0% |
!!! | CTATTAAGTTTTATTAGATA+GGG | + | chr1.1:56944631-56944650 | MS.gene52946:intron | 15.0% |
!!! | TAAAAAATGCTTTTGATATT+TGG | + | chr1.1:56944852-56944871 | MS.gene52946:intron | 15.0% |
!!! | TCTATTAAGTTTTATTAGAT+AGG | + | chr1.1:56944630-56944649 | MS.gene52946:intron | 15.0% |
!!! | TTAATTAGTTTATATACTGT+AGG | + | chr1.1:56945581-56945600 | MS.gene52946:intron | 15.0% |
!! | AAAAAATGATAGAATGAAGA+TGG | - | chr1.1:56942704-56942723 | None:intergenic | 20.0% |
!! | AATAATTCATATGAATGGAA+AGG | - | chr1.1:56945084-56945103 | None:intergenic | 20.0% |
!! | ACACTTAATAATCATATCAA+AGG | - | chr1.1:56943442-56943461 | None:intergenic | 20.0% |
!! | ACATATGTATATATTGCATT+TGG | + | chr1.1:56944376-56944395 | MS.gene52946:intron | 20.0% |
!! | ACTTAATAATCATATCAAAG+GGG | - | chr1.1:56943440-56943459 | None:intergenic | 20.0% |
!! | AGACAAATATAATCAAGTAT+TGG | - | chr1.1:56945030-56945049 | None:intergenic | 20.0% |
!! | ATACTTGATTATATTTGTCT+CGG | + | chr1.1:56945030-56945049 | MS.gene52946:intron | 20.0% |
!! | ATCACAATAATTCATATGAA+TGG | - | chr1.1:56945089-56945108 | None:intergenic | 20.0% |
!! | ATTTATATACATCAGAATCA+TGG | + | chr1.1:56945637-56945656 | MS.gene52946:intron | 20.0% |
!! | CACTTAATAATCATATCAAA+GGG | - | chr1.1:56943441-56943460 | None:intergenic | 20.0% |
!! | GACAATCTTAAAAAAAACTT+TGG | + | chr1.1:56945670-56945689 | MS.gene52946:intron | 20.0% |
!! | TGATATGATTATTAAGTGTT+GGG | + | chr1.1:56943443-56943462 | MS.gene52946:intron | 20.0% |
!! | TTCATATGAATTATTGTGAT+AGG | + | chr1.1:56945089-56945108 | MS.gene52946:intron | 20.0% |
!! | TTGATATGATTATTAAGTGT+TGG | + | chr1.1:56943442-56943461 | MS.gene52946:intron | 20.0% |
!!! | AAATAAAAAACCCTTTTAGA+AGG | - | chr1.1:56944923-56944942 | None:intergenic | 20.0% |
!!! | CATTTGAATAAAATTTTCTG+AGG | + | chr1.1:56943098-56943117 | MS.gene52946:intron | 20.0% |
!!! | GATTATTTTGGTTTGAAAAA+AGG | + | chr1.1:56943960-56943979 | MS.gene52946:intron | 20.0% |
!!! | TAAAAAAGATTTTGCTCTTT+TGG | - | chr1.1:56944261-56944280 | None:intergenic | 20.0% |
!!! | TTTGTGTTGATTTTTCTTTT+GGG | + | chr1.1:56945555-56945574 | MS.gene52946:intron | 20.0% |
!!! | TTTTATTTTCTGCTTACATA+TGG | + | chr1.1:56945806-56945825 | MS.gene52946:intron | 20.0% |
!!! | TTTTGTGTTGATTTTTCTTT+TGG | + | chr1.1:56945554-56945573 | MS.gene52946:intron | 20.0% |
! | AAACAACAATCACATGAATT+TGG | - | chr1.1:56945059-56945078 | None:intergenic | 25.0% |
! | AACTAAATCACCAATCAAAA+AGG | - | chr1.1:56943787-56943806 | None:intergenic | 25.0% |
! | AAGAATAGTTTGATTATGCT+AGG | - | chr1.1:56944542-56944561 | None:intergenic | 25.0% |
! | AAGTTAAATGTAGATAGTGT+AGG | + | chr1.1:56943535-56943554 | MS.gene52946:intron | 25.0% |
! | AATTGATGAGAAAAAGAAAG+AGG | + | chr1.1:56944117-56944136 | MS.gene52946:CDS | 25.0% |
! | AATTTCGTGTAACTAATATG+TGG | + | chr1.1:56943988-56944007 | MS.gene52946:intron | 25.0% |
! | ACTAAATCACCAATCAAAAA+GGG | - | chr1.1:56943786-56943805 | None:intergenic | 25.0% |
! | AGCATATTGCTAATTTACTA+GGG | + | chr1.1:56944654-56944673 | MS.gene52946:intron | 25.0% |
! | AGTAAACTCAAGCAAAATAA+AGG | - | chr1.1:56945933-56945952 | None:intergenic | 25.0% |
! | AGTATAAAGTGAGAAAATCA+AGG | - | chr1.1:56943595-56943614 | None:intergenic | 25.0% |
! | ATACAGAATTAACAGTGATT+TGG | - | chr1.1:56945450-56945469 | None:intergenic | 25.0% |
! | ATTATAGTATTGTAGCGTAA+CGG | - | chr1.1:56945753-56945772 | None:intergenic | 25.0% |
! | CAATTGCAGAATATTATTGA+TGG | - | chr1.1:56945415-56945434 | None:intergenic | 25.0% |
! | CATAGAAAGAATGCAAAAAT+GGG | - | chr1.1:56943316-56943335 | None:intergenic | 25.0% |
! | GTATAAAGTGAGAAAATCAA+GGG | - | chr1.1:56943594-56943613 | None:intergenic | 25.0% |
! | TAATTCTGTATGTTTGGTAT+CGG | + | chr1.1:56945459-56945478 | MS.gene52946:intron | 25.0% |
! | TCCAATGATGTTAAGAAATT+AGG | + | chr1.1:56943203-56943222 | MS.gene52946:intron | 25.0% |
! | TGATAAACTAATTGCCTATT+TGG | - | chr1.1:56945135-56945154 | None:intergenic | 25.0% |
!! | AAACATATATCTTCGCATTT+TGG | - | chr1.1:56943174-56943193 | None:intergenic | 25.0% |
!! | ATTTTGCTTGAGTTTACTAA+TGG | + | chr1.1:56945935-56945954 | MS.gene52946:intron | 25.0% |
!! | TTACTCAATTTTTCTTGCAT+TGG | + | chr1.1:56944334-56944353 | MS.gene52946:intron | 25.0% |
!!! | ACTTTAGTATTCTTTTTTGG+GGG | + | chr1.1:56943933-56943952 | MS.gene52946:intron | 25.0% |
!!! | AGGACTTTAGTATTCTTTTT+TGG | + | chr1.1:56943930-56943949 | MS.gene52946:intron | 25.0% |
!!! | CTGGAATTTGAAATGATTTT+TGG | - | chr1.1:56944824-56944843 | None:intergenic | 25.0% |
!!! | GACTTTAGTATTCTTTTTTG+GGG | + | chr1.1:56943932-56943951 | MS.gene52946:intron | 25.0% |
!!! | GGACTTTAGTATTCTTTTTT+GGG | + | chr1.1:56943931-56943950 | MS.gene52946:intron | 25.0% |
!!! | TAATATGTGGATTTGTTGTA+GGG | + | chr1.1:56944001-56944020 | MS.gene52946:intron | 25.0% |
!!! | TCAGTTTTAATTTTGCTTTG+TGG | + | chr1.1:56942846-56942865 | MS.gene52946:intron | 25.0% |
!!! | TCTGATGTATTATTTCTGTT+TGG | + | chr1.1:56945306-56945325 | MS.gene52946:intron | 25.0% |
!!! | TTGTTTTTGTCGGATTTTAT+TGG | + | chr1.1:56942778-56942797 | MS.gene52946:intron | 25.0% |
!!! | TTTTGGTTTGAAAAAAGGAT+TGG | + | chr1.1:56943965-56943984 | MS.gene52946:intron | 25.0% |
!!! | TTTTTTTTGCAATCCACTAT+TGG | - | chr1.1:56945712-56945731 | None:intergenic | 25.0% |
AAATCAAACCAAAATCAGCA+TGG | - | chr1.1:56942746-56942765 | None:intergenic | 30.0% | |
AACCAGATACTAAAAGAAAG+GGG | - | chr1.1:56944992-56945011 | None:intergenic | 30.0% | |
AAGAAAAACCGCATAATATG+AGG | - | chr1.1:56942878-56942897 | None:intergenic | 30.0% | |
ACAACCAGATACTAAAAGAA+AGG | - | chr1.1:56944994-56945013 | None:intergenic | 30.0% | |
AGAAGTTTATGACTACACTT+CGG | - | chr1.1:56943642-56943661 | None:intergenic | 30.0% | |
ATGAGATATATCTTACTCCA+GGG | - | chr1.1:56943740-56943759 | None:intergenic | 30.0% | |
ATGCCTATTCTTAATCTTCA+TGG | + | chr1.1:56944566-56944585 | MS.gene52946:intron | 30.0% | |
CAACCAGATACTAAAAGAAA+GGG | - | chr1.1:56944993-56945012 | None:intergenic | 30.0% | |
CACTGTTAATTCTGTATGTT+TGG | + | chr1.1:56945453-56945472 | MS.gene52946:intron | 30.0% | |
CCATAGAAAGAATGCAAAAA+TGG | - | chr1.1:56943317-56943336 | None:intergenic | 30.0% | |
CTAAATCACCAATCAAAAAG+GGG | - | chr1.1:56943785-56943804 | None:intergenic | 30.0% | |
GAGCATATTGCTAATTTACT+AGG | + | chr1.1:56944653-56944672 | MS.gene52946:intron | 30.0% | |
GCCTAATTTCTTAACATCAT+TGG | - | chr1.1:56943207-56943226 | None:intergenic | 30.0% | |
TATTCTTAATCTTCATGGGT+GGG | + | chr1.1:56944571-56944590 | MS.gene52946:intron | 30.0% | |
TGCCTATTCTTAATCTTCAT+GGG | + | chr1.1:56944567-56944586 | MS.gene52946:intron | 30.0% | |
TGTTAGAAGAATGTAGGAAA+CGG | + | chr1.1:56945184-56945203 | MS.gene52946:intron | 30.0% | |
TTGTCAAATGAAATCTTGTG+CGG | + | chr1.1:56943233-56943252 | MS.gene52946:intron | 30.0% | |
! | CTAATGGATAATTGCTTTAC+AGG | + | chr1.1:56945951-56945970 | MS.gene52946:intron | 30.0% |
! | GCATATCTACAATCATTTTC+AGG | - | chr1.1:56944202-56944221 | None:intergenic | 30.0% |
! | GTGGATTGCAAAAAAAATAG+CGG | + | chr1.1:56945715-56945734 | MS.gene52946:intron | 30.0% |
! | TGCTTTTGATATTTGGCAAA+AGG | + | chr1.1:56944859-56944878 | MS.gene52946:intron | 30.0% |
! | TTCTTCCCACTACAAATTTT+GGG | + | chr1.1:56942821-56942840 | MS.gene52946:intron | 30.0% |
! | TTGAGTTACAAGTAGCTTTA+AGG | + | chr1.1:56943287-56943306 | MS.gene52946:intron | 30.0% |
!! | CCATTTTTGCATTCTTTCTA+TGG | + | chr1.1:56943314-56943333 | MS.gene52946:intron | 30.0% |
!! | CTAATATGTGGATTTGTTGT+AGG | + | chr1.1:56944000-56944019 | MS.gene52946:intron | 30.0% |
!! | CTGTATTTTTGAATGGAGTA+GGG | + | chr1.1:56944688-56944707 | MS.gene52946:intron | 30.0% |
!! | TGTATTTTTGAATGGAGTAG+GGG | + | chr1.1:56944689-56944708 | MS.gene52946:intron | 30.0% |
!!! | AGCATTTTTTATCAAGAGTC+TGG | - | chr1.1:56944843-56944862 | None:intergenic | 30.0% |
!!! | GCAAAATCTTTTTTATCGCA+TGG | + | chr1.1:56944266-56944285 | MS.gene52946:CDS | 30.0% |
!!! | TCGAATGTTGTTGTTTTTGT+CGG | + | chr1.1:56942768-56942787 | MS.gene52946:intron | 30.0% |
!!! | TTATACTCTAGTCACTTTTG+AGG | + | chr1.1:56943608-56943627 | MS.gene52946:intron | 30.0% |
AAAATAATGTGACGTGGTAG+GGG | + | chr1.1:56945211-56945230 | MS.gene52946:intron | 35.0% | |
AAATCATCATAGCTCTCAGA+AGG | - | chr1.1:56944166-56944185 | None:intergenic | 35.0% | |
AACGAAAGTAGATTGCAGAA+AGG | - | chr1.1:56945391-56945410 | None:intergenic | 35.0% | |
AACGCAACATGGTAAATGAA+AGG | - | chr1.1:56945872-56945891 | None:intergenic | 35.0% | |
AATCATCATAGCTCTCAGAA+GGG | - | chr1.1:56944165-56944184 | None:intergenic | 35.0% | |
AATGAGGAAAACAGCATGTT+TGG | - | chr1.1:56943889-56943908 | None:intergenic | 35.0% | |
ACACACAATATCAGCATTGT+CGG | - | chr1.1:56942978-56942997 | None:intergenic | 35.0% | |
ACGAAAGTAGATTGCAGAAA+GGG | - | chr1.1:56945390-56945409 | None:intergenic | 35.0% | |
ACTATAGTACCTTGTTGAAC+TGG | + | chr1.1:56944769-56944788 | MS.gene52946:intron | 35.0% | |
ATACCATATATGTAGCCACT+GGG | - | chr1.1:56945503-56945522 | None:intergenic | 35.0% | |
CACCCATGAAGATTAAGAAT+AGG | - | chr1.1:56944572-56944591 | None:intergenic | 35.0% | |
CATACCAGTTGATTATAGCA+AGG | - | chr1.1:56944953-56944972 | None:intergenic | 35.0% | |
CATGAGATATATCTTACTCC+AGG | - | chr1.1:56943741-56943760 | None:intergenic | 35.0% | |
CTATAGTACCTTGTTGAACT+GGG | + | chr1.1:56944770-56944789 | MS.gene52946:intron | 35.0% | |
CTATTCTTAATCTTCATGGG+TGG | + | chr1.1:56944570-56944589 | MS.gene52946:intron | 35.0% | |
CTCCATTCAAAAATACAGCT+TGG | - | chr1.1:56944686-56944705 | None:intergenic | 35.0% | |
CTGGGATTCATTTCATTGAA+AGG | + | chr1.1:56943910-56943929 | MS.gene52946:intron | 35.0% | |
GAAAATAATGTGACGTGGTA+GGG | + | chr1.1:56945210-56945229 | MS.gene52946:intron | 35.0% | |
GATGAGAATGTGATCCAAAT+AGG | + | chr1.1:56945118-56945137 | MS.gene52946:intron | 35.0% | |
GATGCTTTATGCTACATCAA+AGG | + | chr1.1:56946003-56946022 | MS.gene52946:CDS | 35.0% | |
GCATGTCTTTAGTACTTTCT+TGG | + | chr1.1:56943121-56943140 | MS.gene52946:intron | 35.0% | |
GTGATTGAATGTACATGTGT+CGG | + | chr1.1:56943404-56943423 | MS.gene52946:intron | 35.0% | |
GTGTGATGTTAGAAGAATGT+AGG | + | chr1.1:56945178-56945197 | MS.gene52946:intron | 35.0% | |
GTTTATGCAAACGGTTCAAA+CGG | - | chr1.1:56944894-56944913 | None:intergenic | 35.0% | |
TAAACCCATAGCCTTCTAAA+AGG | + | chr1.1:56944909-56944928 | MS.gene52946:intron | 35.0% | |
TAAACTAGTGTTGCCAATAG+TGG | + | chr1.1:56945696-56945715 | MS.gene52946:intron | 35.0% | |
TATAGTACCTTGTTGAACTG+GGG | + | chr1.1:56944771-56944790 | MS.gene52946:intron | 35.0% | |
TCAGAGAAAATACACTTCTC+TGG | - | chr1.1:56945332-56945351 | None:intergenic | 35.0% | |
TCTTTAGTACTTTCTTGGAC+AGG | + | chr1.1:56943126-56943145 | MS.gene52946:intron | 35.0% | |
TGAATTATTGTGATAGGACC+CGG | + | chr1.1:56945095-56945114 | MS.gene52946:intron | 35.0% | |
TGAGAAAAAGAAAGAGGTTG+TGG | + | chr1.1:56944123-56944142 | MS.gene52946:CDS | 35.0% | |
TGAGACCCAAAATTTGTAGT+GGG | - | chr1.1:56942829-56942848 | None:intergenic | 35.0% | |
TGTCAAATTACAACTTCCTC+TGG | - | chr1.1:56945898-56945917 | None:intergenic | 35.0% | |
TTATGACTACACTTCGGATT+TGG | - | chr1.1:56943636-56943655 | None:intergenic | 35.0% | |
TTCTCTGCAAGCAGATAATA+GGG | - | chr1.1:56945778-56945797 | None:intergenic | 35.0% | |
TTTATATACTGTAGGCATCC+TGG | + | chr1.1:56945589-56945608 | MS.gene52946:intron | 35.0% | |
TTTATGCTACATCAAAGGAC+AGG | + | chr1.1:56946008-56946027 | MS.gene52946:CDS | 35.0% | |
TTTCTCTGCAAGCAGATAAT+AGG | - | chr1.1:56945779-56945798 | None:intergenic | 35.0% | |
! | AAACCCATAGCCTTCTAAAA+GGG | + | chr1.1:56944910-56944929 | MS.gene52946:intron | 35.0% |
! | ACAACCTTGCTATAATCAAC+TGG | + | chr1.1:56944946-56944965 | MS.gene52946:intron | 35.0% |
! | GATGTAGCATAAAGCATCTT+CGG | - | chr1.1:56946001-56946020 | None:intergenic | 35.0% |
! | GGTTGATTCCTCATATTATG+CGG | + | chr1.1:56942867-56942886 | MS.gene52946:intron | 35.0% |
! | GTTCTTCCCACTACAAATTT+TGG | + | chr1.1:56942820-56942839 | MS.gene52946:intron | 35.0% |
! | TACAGTTTCCCCTTTTTGAT+TGG | + | chr1.1:56943774-56943793 | MS.gene52946:intron | 35.0% |
! | TGTGACCATCTTGTTATAAG+CGG | + | chr1.1:56945255-56945274 | MS.gene52946:intron | 35.0% |
! | TTTTCTGCTTACATATGGAG+AGG | + | chr1.1:56945811-56945830 | MS.gene52946:intron | 35.0% |
!! | AAAACCCTTTTAGAAGGCTA+TGG | - | chr1.1:56944917-56944936 | None:intergenic | 35.0% |
!! | AAACCCTTTTAGAAGGCTAT+GGG | - | chr1.1:56944916-56944935 | None:intergenic | 35.0% |
!! | AGAAGTGTATTTTCTCTGAG+AGG | + | chr1.1:56945333-56945352 | MS.gene52946:intron | 35.0% |
!! | GATTATTAAGTGTTGGGATC+CGG | + | chr1.1:56943449-56943468 | MS.gene52946:intron | 35.0% |
!! | GCTGTATTTTTGAATGGAGT+AGG | + | chr1.1:56944687-56944706 | MS.gene52946:intron | 35.0% |
!! | TCTACAATCATTTTCAGGCA+AGG | - | chr1.1:56944197-56944216 | None:intergenic | 35.0% |
!! | TGCCAAGCTGTATTTTTGAA+TGG | + | chr1.1:56944681-56944700 | MS.gene52946:intron | 35.0% |
!! | TTTGGGGGAGTTGATTATTT+TGG | + | chr1.1:56943948-56943967 | MS.gene52946:intron | 35.0% |
AAGTGAATTGCCCACTTTAG+AGG | - | chr1.1:56943477-56943496 | None:intergenic | 40.0% | |
AGAAGAATGTAGGAAACGGA+GGG | + | chr1.1:56945188-56945207 | MS.gene52946:intron | 40.0% | |
AGGCTATGGGTTTATGCAAA+CGG | - | chr1.1:56944903-56944922 | None:intergenic | 40.0% | |
AGTTGTCCAAATCCATTGTG+TGG | + | chr1.1:56945154-56945173 | MS.gene52946:intron | 40.0% | |
ATCAAAGGACAGGTTCAGAA+GGG | + | chr1.1:56946018-56946037 | MS.gene52946:CDS | 40.0% | |
CTCGTTCAGATTTCTGTCTT+CGG | - | chr1.1:56944454-56944473 | None:intergenic | 40.0% | |
CTGAGACCCAAAATTTGTAG+TGG | - | chr1.1:56942830-56942849 | None:intergenic | 40.0% | |
GAAGACAGAAATCTGAACGA+GGG | + | chr1.1:56944453-56944472 | MS.gene52946:intron | 40.0% | |
GAATTATTGTGATAGGACCC+GGG | + | chr1.1:56945096-56945115 | MS.gene52946:intron | 40.0% | |
GATACCATATATGTAGCCAC+TGG | - | chr1.1:56945504-56945523 | None:intergenic | 40.0% | |
GCAAAGTGTGAAGATAGAGA+TGG | - | chr1.1:56945837-56945856 | None:intergenic | 40.0% | |
GGAAAATAATGTGACGTGGT+AGG | + | chr1.1:56945209-56945228 | MS.gene52946:intron | 40.0% | |
GGAAACTGTAAATATTCCCG+GGG | - | chr1.1:56943764-56943783 | None:intergenic | 40.0% | |
GGGAAACTGTAAATATTCCC+GGG | - | chr1.1:56943765-56943784 | None:intergenic | 40.0% | |
GGGGAAACTGTAAATATTCC+CGG | - | chr1.1:56943766-56943785 | None:intergenic | 40.0% | |
GTAAGATATATCTCATGCCC+CGG | + | chr1.1:56943744-56943763 | MS.gene52946:intron | 40.0% | |
GTTGTCCAAATCCATTGTGT+GGG | + | chr1.1:56945155-56945174 | MS.gene52946:intron | 40.0% | |
TAAGATATATCTCATGCCCC+GGG | + | chr1.1:56943745-56943764 | MS.gene52946:intron | 40.0% | |
TAGAAGAATGTAGGAAACGG+AGG | + | chr1.1:56945187-56945206 | MS.gene52946:intron | 40.0% | |
TATCCCAGTGGCTACATATA+TGG | + | chr1.1:56945497-56945516 | MS.gene52946:intron | 40.0% | |
TCAAAGCAACTTCATGCATG+AGG | - | chr1.1:56943271-56943290 | None:intergenic | 40.0% | |
TGAAATGAATCCCAGCAATG+AGG | - | chr1.1:56943905-56943924 | None:intergenic | 40.0% | |
TGTAGGGAAATGCATCTTCT+GGG | + | chr1.1:56944017-56944036 | MS.gene52946:intron | 40.0% | |
TTGTAGGGAAATGCATCTTC+TGG | + | chr1.1:56944016-56944035 | MS.gene52946:intron | 40.0% | |
TTGTCCAAATCCATTGTGTG+GGG | + | chr1.1:56945156-56945175 | MS.gene52946:intron | 40.0% | |
TTTGGATCACATTCTCATCC+CGG | - | chr1.1:56945117-56945136 | None:intergenic | 40.0% | |
! | CCAAAATCAGCATGGTCTTA+AGG | - | chr1.1:56942738-56942757 | None:intergenic | 40.0% |
! | GACCCCTTTCTTTTAGTATC+TGG | + | chr1.1:56944987-56945006 | MS.gene52946:intron | 40.0% |
! | GTGACCATCTTGTTATAAGC+GGG | + | chr1.1:56945256-56945275 | MS.gene52946:intron | 40.0% |
!! | GTCGGATTTTATTGGTTGCA+TGG | + | chr1.1:56942786-56942805 | MS.gene52946:intron | 40.0% |
!! | TGTTTGGCAGAGCATTCTTT+TGG | - | chr1.1:56943873-56943892 | None:intergenic | 40.0% |
!!! | ATGCTGTTTTCCTCATTGCT+GGG | + | chr1.1:56943892-56943911 | MS.gene52946:intron | 40.0% |
!!! | CCTTAAGACCATGCTGATTT+TGG | + | chr1.1:56942735-56942754 | MS.gene52946:intron | 40.0% |
AACCTGTGAAGCATAGACAC+TGG | + | chr1.1:56943344-56943363 | MS.gene52946:intron | 45.0% | |
ACCATGTTGCGTTAAACCAG+AGG | + | chr1.1:56945879-56945898 | MS.gene52946:intron | 45.0% | |
AGATTGTCGATCTTGAGACC+AGG | - | chr1.1:56945610-56945629 | None:intergenic | 45.0% | |
ATTGCTACTAGCGTCAGTGT+CGG | - | chr1.1:56943378-56943397 | None:intergenic | 45.0% | |
CATCAAAGGACAGGTTCAGA+AGG | + | chr1.1:56946017-56946036 | MS.gene52946:CDS | 45.0% | |
CCTACCCGCTTATAACAAGA+TGG | - | chr1.1:56945263-56945282 | None:intergenic | 45.0% | |
CGAAGACAGAAATCTGAACG+AGG | + | chr1.1:56944452-56944471 | MS.gene52946:intron | 45.0% | |
CTGTTGCCTGAATCTCATAG+TGG | - | chr1.1:56946057-56946076 | None:intergenic | 45.0% | |
GAGGTTGTGGTCGAAAAAAC+TGG | + | chr1.1:56944136-56944155 | MS.gene52946:CDS | 45.0% | |
GCACATTTCAGGAATTGCAG+AGG | + | chr1.1:56944065-56944084 | MS.gene52946:CDS | 45.0% | |
GGAGGGAAAATAATGTGACG+TGG | + | chr1.1:56945205-56945224 | MS.gene52946:intron | 45.0% | |
GGGAATCCACTATGAGATTC+AGG | + | chr1.1:56946048-56946067 | MS.gene52946:CDS | 45.0% | |
GTTGTGGTCGAAAAAACTGG+AGG | + | chr1.1:56944139-56944158 | MS.gene52946:CDS | 45.0% | |
TAACATCACACCCCACACAA+TGG | - | chr1.1:56945169-56945188 | None:intergenic | 45.0% | |
TTGGATCACATTCTCATCCC+GGG | - | chr1.1:56945116-56945135 | None:intergenic | 45.0% | |
! | ACTTCGAGTTCCATCTCTGT+TGG | - | chr1.1:56946082-56946101 | None:intergenic | 45.0% |
! | ATTGCCCACTTTAGAGGATC+CGG | - | chr1.1:56943471-56943490 | None:intergenic | 45.0% |
! | CCATCTTGTTATAAGCGGGT+AGG | + | chr1.1:56945260-56945279 | MS.gene52946:intron | 45.0% |
! | CTTCGAGTTCCATCTCTGTT+GGG | - | chr1.1:56946081-56946100 | None:intergenic | 45.0% |
! | TCAGCATTGTCGGTTGAGAT+AGG | - | chr1.1:56942968-56942987 | None:intergenic | 45.0% |
! | TCCTCTGGTTTAACGCAACA+TGG | - | chr1.1:56945883-56945902 | None:intergenic | 45.0% |
! | TCTTGTTATAAGCGGGTAGG+AGG | + | chr1.1:56945263-56945282 | MS.gene52946:intron | 45.0% |
!! | GGAAATGCATCTTCTGGGAT+GGG | + | chr1.1:56944022-56944041 | MS.gene52946:CDS | 45.0% |
!!! | CATGCTGTTTTCCTCATTGC+TGG | + | chr1.1:56943891-56943910 | MS.gene52946:intron | 45.0% |
AATGTGACGTGGTAGGGGAT+GGG | + | chr1.1:56945216-56945235 | MS.gene52946:intron | 50.0% | |
ACGATCGTTTCCGAGCGAAA+GGG | - | chr1.1:56943005-56943024 | None:intergenic | 50.0% | |
ATGCAGTCCCCAGTTCAACA+AGG | - | chr1.1:56944781-56944800 | None:intergenic | 50.0% | |
ATGGCTTTCAGAGTGGGAGT+TGG | + | chr1.1:56942666-56942685 | MS.gene52946:CDS | 50.0% | |
CGCATCATACTGTATCCCAG+TGG | + | chr1.1:56945485-56945504 | MS.gene52946:intron | 50.0% | |
CTTTCAGAGTGGGAGTTGGA+GGG | + | chr1.1:56942670-56942689 | MS.gene52946:CDS | 50.0% | |
GCAGAGCGTAAGCACATTTC+AGG | + | chr1.1:56944054-56944073 | MS.gene52946:CDS | 50.0% | |
GGACGAATACGAGCTACAGA+AGG | - | chr1.1:56945980-56945999 | None:intergenic | 50.0% | |
GTCCAGTGTCTATGCTTCAC+AGG | - | chr1.1:56943349-56943368 | None:intergenic | 50.0% | |
GTGTGTTAGACCCTTTCGCT+CGG | + | chr1.1:56942992-56943011 | MS.gene52946:intron | 50.0% | |
GTTATAAGCGGGTAGGAGGA+GGG | + | chr1.1:56945267-56945286 | MS.gene52946:intron | 50.0% | |
TAATGTGACGTGGTAGGGGA+TGG | + | chr1.1:56945215-56945234 | MS.gene52946:intron | 50.0% | |
TGAGAGGAGCCTAGCTATGT+GGG | + | chr1.1:56945349-56945368 | MS.gene52946:intron | 50.0% | |
TGTTATAAGCGGGTAGGAGG+AGG | + | chr1.1:56945266-56945285 | MS.gene52946:intron | 50.0% | |
TTTCAGAGTGGGAGTTGGAG+GGG | + | chr1.1:56942671-56942690 | MS.gene52946:CDS | 50.0% | |
! | CACACCCCACACAATGGATT+TGG | - | chr1.1:56945163-56945182 | None:intergenic | 50.0% |
! | GGGAAATGCATCTTCTGGGA+TGG | + | chr1.1:56944021-56944040 | MS.gene52946:intron | 50.0% |
! | TGCATGCACATTTTGTGCCC+TGG | + | chr1.1:56943720-56943739 | MS.gene52946:intron | 50.0% |
!! | GGATCCGGATCCTCTAAAGT+GGG | + | chr1.1:56943464-56943483 | MS.gene52946:intron | 50.0% |
AGGTTCAGAAGGGAGCTGCA+GGG | + | chr1.1:56946028-56946047 | MS.gene52946:CDS | 55.0% | |
ATGTGACGTGGTAGGGGATG+GGG | + | chr1.1:56945217-56945236 | MS.gene52946:intron | 55.0% | |
CACGATCGTTTCCGAGCGAA+AGG | - | chr1.1:56943006-56943025 | None:intergenic | 55.0% | |
CCTAGCTATGTGGGTAGAGG+AGG | + | chr1.1:56945358-56945377 | MS.gene52946:intron | 55.0% | |
CCTCCTCTACCCACATAGCT+AGG | - | chr1.1:56945361-56945380 | None:intergenic | 55.0% | |
CTGAGAGGAGCCTAGCTATG+TGG | + | chr1.1:56945348-56945367 | MS.gene52946:intron | 55.0% | |
GAGCCTAGCTATGTGGGTAG+AGG | + | chr1.1:56945355-56945374 | MS.gene52946:intron | 55.0% | |
GATGGAACTCGAAGTCCTCC+AGG | + | chr1.1:56946087-56946106 | MS.gene52946:CDS | 55.0% | |
GCTTTCAGAGTGGGAGTTGG+AGG | + | chr1.1:56942669-56942688 | MS.gene52946:CDS | 55.0% | |
GGCAACAGACCCAACAGAGA+TGG | + | chr1.1:56946069-56946088 | MS.gene52946:CDS | 55.0% | |
! | GGGATCCGGATCCTCTAAAG+TGG | + | chr1.1:56943463-56943482 | MS.gene52946:intron | 55.0% |
CAGGTTCAGAAGGGAGCTGC+AGG | + | chr1.1:56946027-56946046 | MS.gene52946:CDS | 60.0% | |
GGGTAGGAGGAGGGAGAGAA+AGG | + | chr1.1:56945276-56945295 | MS.gene52946:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 56942666 | 56946123 | 56942666 | ID=MS.gene52946 |
chr1.1 | mRNA | 56942666 | 56946123 | 56942666 | ID=MS.gene52946.t1;Parent=MS.gene52946 |
chr1.1 | exon | 56942666 | 56942692 | 56942666 | ID=MS.gene52946.t1.exon1;Parent=MS.gene52946.t1 |
chr1.1 | CDS | 56942666 | 56942692 | 56942666 | ID=cds.MS.gene52946.t1;Parent=MS.gene52946.t1 |
chr1.1 | exon | 56944022 | 56944287 | 56944022 | ID=MS.gene52946.t1.exon2;Parent=MS.gene52946.t1 |
chr1.1 | CDS | 56944022 | 56944287 | 56944022 | ID=cds.MS.gene52946.t1;Parent=MS.gene52946.t1 |
chr1.1 | exon | 56945973 | 56946123 | 56945973 | ID=MS.gene52946.t1.exon3;Parent=MS.gene52946.t1 |
chr1.1 | CDS | 56945973 | 56946123 | 56945973 | ID=cds.MS.gene52946.t1;Parent=MS.gene52946.t1 |
Gene Sequence |
Protein sequence |