AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52946


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52946.t1 MTR_1g076170 99.320 147 1 0 1 147 1 147 1.46e-108 305
MS.gene52946.t1 MTR_7g096890 78.912 147 30 1 1 147 1 146 2.23e-86 249
MS.gene52946.t1 MTR_1g068950 62.319 138 52 0 10 147 2 139 1.82e-66 198
MS.gene52946.t1 MTR_4g073590 61.644 146 50 1 1 146 3 142 3.79e-66 197
MS.gene52946.t1 MTR_5g010430 61.314 137 51 1 10 146 4 138 1.23e-63 191
MS.gene52946.t1 MTR_8g098470 60.584 137 52 1 10 146 2 136 1.48e-61 186
MS.gene52946.t1 MTR_2g028670 55.797 138 61 0 10 147 2 139 1.14e-58 179
MS.gene52946.t1 MTR_8g088210 55.072 138 62 0 10 147 2 139 6.67e-56 172
MS.gene52946.t1 MTR_1g101190 58.394 137 55 1 10 146 463 597 5.48e-55 182
MS.gene52946.t1 MTR_8g088210 54.545 132 60 0 16 147 1 132 3.43e-52 162
MS.gene52946.t1 MTR_4g073590 58.416 101 36 1 1 101 3 97 3.17e-40 131
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52946.t1 AT2G31200 76.190 147 34 1 1 147 1 146 6.42e-82 238
MS.gene52946.t1 AT5G59890 61.594 138 53 0 10 147 2 139 2.89e-65 195
MS.gene52946.t1 AT3G46010 57.931 145 61 0 3 147 6 150 8.31e-65 194
MS.gene52946.t1 AT4G00680 58.042 143 60 0 5 147 7 149 1.27e-64 194
MS.gene52946.t1 AT3G46010 60.145 138 55 0 10 147 2 139 2.34e-64 193
MS.gene52946.t1 AT4G00680 58.696 138 57 0 10 147 2 139 4.93e-64 192
MS.gene52946.t1 AT1G01750 58.696 138 57 0 10 147 2 139 1.87e-63 191
MS.gene52946.t1 AT1G01750 58.696 138 57 0 10 147 7 144 2.09e-63 191
MS.gene52946.t1 AT2G16700 58.503 147 55 1 1 147 3 143 2.93e-63 190
MS.gene52946.t1 AT4G25590 62.774 137 49 1 10 146 2 136 3.51e-63 190
MS.gene52946.t1 AT3G46000 60.870 138 52 1 10 147 2 137 2.57e-62 188
MS.gene52946.t1 AT3G46000 60.870 138 52 1 10 147 21 156 3.61e-62 188
MS.gene52946.t1 AT5G59890 61.364 132 51 0 16 147 1 132 2.07e-61 185
MS.gene52946.t1 AT5G59890 61.364 132 51 0 16 147 1 132 2.07e-61 185
MS.gene52946.t1 AT2G16700 61.364 132 51 0 16 147 1 132 1.08e-60 183
MS.gene52946.t1 AT2G16700 61.364 132 51 0 16 147 1 132 1.08e-60 183
MS.gene52946.t1 AT4G34970 58.394 137 57 0 11 147 5 141 1.92e-60 183
MS.gene52946.t1 AT5G52360 61.314 137 51 1 10 146 2 136 4.43e-60 182
MS.gene52946.t1 AT4G25590 62.595 131 47 1 16 146 1 129 1.66e-59 181
MS.gene52946.t1 AT5G59880 55.797 138 61 0 10 147 2 139 2.69e-59 180
MS.gene52946.t1 AT3G46000 60.606 132 50 1 16 147 1 130 1.29e-58 178
MS.gene52946.t1 AT5G59880 48.551 138 56 1 10 147 2 124 3.37e-46 146
MS.gene52946.t1 AT2G16700 50.427 117 51 2 1 117 3 112 9.26e-37 122
MS.gene52946.t1 AT3G45990 42.754 138 68 3 16 147 1 133 2.32e-34 117

Find 30 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTAGGGAAATGCATCTTC+TGG 0.261866 1.1:+56944016 MS.gene52946:intron
GCAGAGCGTAAGCACATTTC+AGG 0.286465 1.1:+56944054 MS.gene52946:CDS
GGGAATCCACTATGAGATTC+AGG 0.356002 1.1:+56946048 MS.gene52946:CDS
CAGGTTCAGAAGGGAGCTGC+AGG 0.400251 1.1:+56946027 MS.gene52946:CDS
GCTTTCAGAGTGGGAGTTGG+AGG 0.419649 1.1:+56942669 MS.gene52946:CDS
GTGATTAGTTCGCACGCTCC+TGG 0.421098 1.1:-56946105 None:intergenic
GATGTAGCATAAAGCATCTT+CGG 0.454388 1.1:-56945998 None:intergenic
ACTTCGAGTTCCATCTCTGT+TGG 0.461999 1.1:-56946079 None:intergenic
CTTCGAGTTCCATCTCTGTT+GGG 0.469550 1.1:-56946078 None:intergenic
TGTAGGGAAATGCATCTTCT+GGG 0.504974 1.1:+56944017 MS.gene52946:intron
CTTTCAGAGTGGGAGTTGGA+GGG 0.516133 1.1:+56942670 MS.gene52946:CDS
ATGGCTTTCAGAGTGGGAGT+TGG 0.530306 1.1:+56942666 MS.gene52946:CDS
TTTCAGAGTGGGAGTTGGAG+GGG 0.532929 1.1:+56942671 MS.gene52946:CDS
ATAGCTATGGCTTTCAGAGT+GGG 0.535262 1.1:+56942660 None:intergenic
GGGAAATGCATCTTCTGGGA+TGG 0.538512 1.1:+56944021 MS.gene52946:intron
CATCAAAGGACAGGTTCAGA+AGG 0.548452 1.1:+56946017 MS.gene52946:CDS
GGAAATGCATCTTCTGGGAT+GGG 0.555903 1.1:+56944022 MS.gene52946:CDS
GGCAACAGACCCAACAGAGA+TGG 0.557284 1.1:+56946069 MS.gene52946:CDS
GATGGAACTCGAAGTCCTCC+AGG 0.560122 1.1:+56946087 MS.gene52946:CDS
AAATCATCATAGCTCTCAGA+AGG 0.561770 1.1:-56944163 None:intergenic
GGACGAATACGAGCTACAGA+AGG 0.568172 1.1:-56945977 None:intergenic
CATAGCTATGGCTTTCAGAG+TGG 0.573358 1.1:+56942659 None:intergenic
CTGTTGCCTGAATCTCATAG+TGG 0.585469 1.1:-56946054 None:intergenic
TTTATGCTACATCAAAGGAC+AGG 0.592719 1.1:+56946008 MS.gene52946:CDS
GATGCTTTATGCTACATCAA+AGG 0.601779 1.1:+56946003 MS.gene52946:CDS
ATCAAAGGACAGGTTCAGAA+GGG 0.621100 1.1:+56946018 MS.gene52946:CDS
GCACATTTCAGGAATTGCAG+AGG 0.661602 1.1:+56944065 MS.gene52946:CDS
ATTAGTTCGCACGCTCCTGG+AGG 0.663424 1.1:-56946102 None:intergenic
AGGTTCAGAAGGGAGCTGCA+GGG 0.689968 1.1:+56946028 MS.gene52946:CDS
AATCATCATAGCTCTCAGAA+GGG 0.724970 1.1:-56944162 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACATGATTGAAAAATATA+TGG - chr1.1:56942913-56942932 None:intergenic 15.0%
!! AACACAAAAATGAATAAAAA+AGG - chr1.1:56945543-56945562 None:intergenic 15.0%
!!! ATTTGAATAAAATTTTCTGA+GGG + chr1.1:56943099-56943118 MS.gene52946:intron 15.0%
!!! CTATTAAGTTTTATTAGATA+GGG + chr1.1:56944631-56944650 MS.gene52946:intron 15.0%
!!! TAAAAAATGCTTTTGATATT+TGG + chr1.1:56944852-56944871 MS.gene52946:intron 15.0%
!!! TCTATTAAGTTTTATTAGAT+AGG + chr1.1:56944630-56944649 MS.gene52946:intron 15.0%
!!! TTAATTAGTTTATATACTGT+AGG + chr1.1:56945581-56945600 MS.gene52946:intron 15.0%
!! AAAAAATGATAGAATGAAGA+TGG - chr1.1:56942704-56942723 None:intergenic 20.0%
!! AATAATTCATATGAATGGAA+AGG - chr1.1:56945084-56945103 None:intergenic 20.0%
!! ACACTTAATAATCATATCAA+AGG - chr1.1:56943442-56943461 None:intergenic 20.0%
!! ACATATGTATATATTGCATT+TGG + chr1.1:56944376-56944395 MS.gene52946:intron 20.0%
!! ACTTAATAATCATATCAAAG+GGG - chr1.1:56943440-56943459 None:intergenic 20.0%
!! AGACAAATATAATCAAGTAT+TGG - chr1.1:56945030-56945049 None:intergenic 20.0%
!! ATACTTGATTATATTTGTCT+CGG + chr1.1:56945030-56945049 MS.gene52946:intron 20.0%
!! ATCACAATAATTCATATGAA+TGG - chr1.1:56945089-56945108 None:intergenic 20.0%
!! ATTTATATACATCAGAATCA+TGG + chr1.1:56945637-56945656 MS.gene52946:intron 20.0%
!! CACTTAATAATCATATCAAA+GGG - chr1.1:56943441-56943460 None:intergenic 20.0%
!! GACAATCTTAAAAAAAACTT+TGG + chr1.1:56945670-56945689 MS.gene52946:intron 20.0%
!! TGATATGATTATTAAGTGTT+GGG + chr1.1:56943443-56943462 MS.gene52946:intron 20.0%
!! TTCATATGAATTATTGTGAT+AGG + chr1.1:56945089-56945108 MS.gene52946:intron 20.0%
!! TTGATATGATTATTAAGTGT+TGG + chr1.1:56943442-56943461 MS.gene52946:intron 20.0%
!!! AAATAAAAAACCCTTTTAGA+AGG - chr1.1:56944923-56944942 None:intergenic 20.0%
!!! CATTTGAATAAAATTTTCTG+AGG + chr1.1:56943098-56943117 MS.gene52946:intron 20.0%
!!! GATTATTTTGGTTTGAAAAA+AGG + chr1.1:56943960-56943979 MS.gene52946:intron 20.0%
!!! TAAAAAAGATTTTGCTCTTT+TGG - chr1.1:56944261-56944280 None:intergenic 20.0%
!!! TTTGTGTTGATTTTTCTTTT+GGG + chr1.1:56945555-56945574 MS.gene52946:intron 20.0%
!!! TTTTATTTTCTGCTTACATA+TGG + chr1.1:56945806-56945825 MS.gene52946:intron 20.0%
!!! TTTTGTGTTGATTTTTCTTT+TGG + chr1.1:56945554-56945573 MS.gene52946:intron 20.0%
! AAACAACAATCACATGAATT+TGG - chr1.1:56945059-56945078 None:intergenic 25.0%
! AACTAAATCACCAATCAAAA+AGG - chr1.1:56943787-56943806 None:intergenic 25.0%
! AAGAATAGTTTGATTATGCT+AGG - chr1.1:56944542-56944561 None:intergenic 25.0%
! AAGTTAAATGTAGATAGTGT+AGG + chr1.1:56943535-56943554 MS.gene52946:intron 25.0%
! AATTGATGAGAAAAAGAAAG+AGG + chr1.1:56944117-56944136 MS.gene52946:CDS 25.0%
! AATTTCGTGTAACTAATATG+TGG + chr1.1:56943988-56944007 MS.gene52946:intron 25.0%
! ACTAAATCACCAATCAAAAA+GGG - chr1.1:56943786-56943805 None:intergenic 25.0%
! AGCATATTGCTAATTTACTA+GGG + chr1.1:56944654-56944673 MS.gene52946:intron 25.0%
! AGTAAACTCAAGCAAAATAA+AGG - chr1.1:56945933-56945952 None:intergenic 25.0%
! AGTATAAAGTGAGAAAATCA+AGG - chr1.1:56943595-56943614 None:intergenic 25.0%
! ATACAGAATTAACAGTGATT+TGG - chr1.1:56945450-56945469 None:intergenic 25.0%
! ATTATAGTATTGTAGCGTAA+CGG - chr1.1:56945753-56945772 None:intergenic 25.0%
! CAATTGCAGAATATTATTGA+TGG - chr1.1:56945415-56945434 None:intergenic 25.0%
! CATAGAAAGAATGCAAAAAT+GGG - chr1.1:56943316-56943335 None:intergenic 25.0%
! GTATAAAGTGAGAAAATCAA+GGG - chr1.1:56943594-56943613 None:intergenic 25.0%
! TAATTCTGTATGTTTGGTAT+CGG + chr1.1:56945459-56945478 MS.gene52946:intron 25.0%
! TCCAATGATGTTAAGAAATT+AGG + chr1.1:56943203-56943222 MS.gene52946:intron 25.0%
! TGATAAACTAATTGCCTATT+TGG - chr1.1:56945135-56945154 None:intergenic 25.0%
!! AAACATATATCTTCGCATTT+TGG - chr1.1:56943174-56943193 None:intergenic 25.0%
!! ATTTTGCTTGAGTTTACTAA+TGG + chr1.1:56945935-56945954 MS.gene52946:intron 25.0%
!! TTACTCAATTTTTCTTGCAT+TGG + chr1.1:56944334-56944353 MS.gene52946:intron 25.0%
!!! ACTTTAGTATTCTTTTTTGG+GGG + chr1.1:56943933-56943952 MS.gene52946:intron 25.0%
!!! AGGACTTTAGTATTCTTTTT+TGG + chr1.1:56943930-56943949 MS.gene52946:intron 25.0%
!!! CTGGAATTTGAAATGATTTT+TGG - chr1.1:56944824-56944843 None:intergenic 25.0%
!!! GACTTTAGTATTCTTTTTTG+GGG + chr1.1:56943932-56943951 MS.gene52946:intron 25.0%
!!! GGACTTTAGTATTCTTTTTT+GGG + chr1.1:56943931-56943950 MS.gene52946:intron 25.0%
!!! TAATATGTGGATTTGTTGTA+GGG + chr1.1:56944001-56944020 MS.gene52946:intron 25.0%
!!! TCAGTTTTAATTTTGCTTTG+TGG + chr1.1:56942846-56942865 MS.gene52946:intron 25.0%
!!! TCTGATGTATTATTTCTGTT+TGG + chr1.1:56945306-56945325 MS.gene52946:intron 25.0%
!!! TTGTTTTTGTCGGATTTTAT+TGG + chr1.1:56942778-56942797 MS.gene52946:intron 25.0%
!!! TTTTGGTTTGAAAAAAGGAT+TGG + chr1.1:56943965-56943984 MS.gene52946:intron 25.0%
!!! TTTTTTTTGCAATCCACTAT+TGG - chr1.1:56945712-56945731 None:intergenic 25.0%
AAATCAAACCAAAATCAGCA+TGG - chr1.1:56942746-56942765 None:intergenic 30.0%
AACCAGATACTAAAAGAAAG+GGG - chr1.1:56944992-56945011 None:intergenic 30.0%
AAGAAAAACCGCATAATATG+AGG - chr1.1:56942878-56942897 None:intergenic 30.0%
ACAACCAGATACTAAAAGAA+AGG - chr1.1:56944994-56945013 None:intergenic 30.0%
AGAAGTTTATGACTACACTT+CGG - chr1.1:56943642-56943661 None:intergenic 30.0%
ATGAGATATATCTTACTCCA+GGG - chr1.1:56943740-56943759 None:intergenic 30.0%
ATGCCTATTCTTAATCTTCA+TGG + chr1.1:56944566-56944585 MS.gene52946:intron 30.0%
CAACCAGATACTAAAAGAAA+GGG - chr1.1:56944993-56945012 None:intergenic 30.0%
CACTGTTAATTCTGTATGTT+TGG + chr1.1:56945453-56945472 MS.gene52946:intron 30.0%
CCATAGAAAGAATGCAAAAA+TGG - chr1.1:56943317-56943336 None:intergenic 30.0%
CTAAATCACCAATCAAAAAG+GGG - chr1.1:56943785-56943804 None:intergenic 30.0%
GAGCATATTGCTAATTTACT+AGG + chr1.1:56944653-56944672 MS.gene52946:intron 30.0%
GCCTAATTTCTTAACATCAT+TGG - chr1.1:56943207-56943226 None:intergenic 30.0%
TATTCTTAATCTTCATGGGT+GGG + chr1.1:56944571-56944590 MS.gene52946:intron 30.0%
TGCCTATTCTTAATCTTCAT+GGG + chr1.1:56944567-56944586 MS.gene52946:intron 30.0%
TGTTAGAAGAATGTAGGAAA+CGG + chr1.1:56945184-56945203 MS.gene52946:intron 30.0%
TTGTCAAATGAAATCTTGTG+CGG + chr1.1:56943233-56943252 MS.gene52946:intron 30.0%
! CTAATGGATAATTGCTTTAC+AGG + chr1.1:56945951-56945970 MS.gene52946:intron 30.0%
! GCATATCTACAATCATTTTC+AGG - chr1.1:56944202-56944221 None:intergenic 30.0%
! GTGGATTGCAAAAAAAATAG+CGG + chr1.1:56945715-56945734 MS.gene52946:intron 30.0%
! TGCTTTTGATATTTGGCAAA+AGG + chr1.1:56944859-56944878 MS.gene52946:intron 30.0%
! TTCTTCCCACTACAAATTTT+GGG + chr1.1:56942821-56942840 MS.gene52946:intron 30.0%
! TTGAGTTACAAGTAGCTTTA+AGG + chr1.1:56943287-56943306 MS.gene52946:intron 30.0%
!! CCATTTTTGCATTCTTTCTA+TGG + chr1.1:56943314-56943333 MS.gene52946:intron 30.0%
!! CTAATATGTGGATTTGTTGT+AGG + chr1.1:56944000-56944019 MS.gene52946:intron 30.0%
!! CTGTATTTTTGAATGGAGTA+GGG + chr1.1:56944688-56944707 MS.gene52946:intron 30.0%
!! TGTATTTTTGAATGGAGTAG+GGG + chr1.1:56944689-56944708 MS.gene52946:intron 30.0%
!!! AGCATTTTTTATCAAGAGTC+TGG - chr1.1:56944843-56944862 None:intergenic 30.0%
!!! GCAAAATCTTTTTTATCGCA+TGG + chr1.1:56944266-56944285 MS.gene52946:CDS 30.0%
!!! TCGAATGTTGTTGTTTTTGT+CGG + chr1.1:56942768-56942787 MS.gene52946:intron 30.0%
!!! TTATACTCTAGTCACTTTTG+AGG + chr1.1:56943608-56943627 MS.gene52946:intron 30.0%
AAAATAATGTGACGTGGTAG+GGG + chr1.1:56945211-56945230 MS.gene52946:intron 35.0%
AAATCATCATAGCTCTCAGA+AGG - chr1.1:56944166-56944185 None:intergenic 35.0%
AACGAAAGTAGATTGCAGAA+AGG - chr1.1:56945391-56945410 None:intergenic 35.0%
AACGCAACATGGTAAATGAA+AGG - chr1.1:56945872-56945891 None:intergenic 35.0%
AATCATCATAGCTCTCAGAA+GGG - chr1.1:56944165-56944184 None:intergenic 35.0%
AATGAGGAAAACAGCATGTT+TGG - chr1.1:56943889-56943908 None:intergenic 35.0%
ACACACAATATCAGCATTGT+CGG - chr1.1:56942978-56942997 None:intergenic 35.0%
ACGAAAGTAGATTGCAGAAA+GGG - chr1.1:56945390-56945409 None:intergenic 35.0%
ACTATAGTACCTTGTTGAAC+TGG + chr1.1:56944769-56944788 MS.gene52946:intron 35.0%
ATACCATATATGTAGCCACT+GGG - chr1.1:56945503-56945522 None:intergenic 35.0%
CACCCATGAAGATTAAGAAT+AGG - chr1.1:56944572-56944591 None:intergenic 35.0%
CATACCAGTTGATTATAGCA+AGG - chr1.1:56944953-56944972 None:intergenic 35.0%
CATGAGATATATCTTACTCC+AGG - chr1.1:56943741-56943760 None:intergenic 35.0%
CTATAGTACCTTGTTGAACT+GGG + chr1.1:56944770-56944789 MS.gene52946:intron 35.0%
CTATTCTTAATCTTCATGGG+TGG + chr1.1:56944570-56944589 MS.gene52946:intron 35.0%
CTCCATTCAAAAATACAGCT+TGG - chr1.1:56944686-56944705 None:intergenic 35.0%
CTGGGATTCATTTCATTGAA+AGG + chr1.1:56943910-56943929 MS.gene52946:intron 35.0%
GAAAATAATGTGACGTGGTA+GGG + chr1.1:56945210-56945229 MS.gene52946:intron 35.0%
GATGAGAATGTGATCCAAAT+AGG + chr1.1:56945118-56945137 MS.gene52946:intron 35.0%
GATGCTTTATGCTACATCAA+AGG + chr1.1:56946003-56946022 MS.gene52946:CDS 35.0%
GCATGTCTTTAGTACTTTCT+TGG + chr1.1:56943121-56943140 MS.gene52946:intron 35.0%
GTGATTGAATGTACATGTGT+CGG + chr1.1:56943404-56943423 MS.gene52946:intron 35.0%
GTGTGATGTTAGAAGAATGT+AGG + chr1.1:56945178-56945197 MS.gene52946:intron 35.0%
GTTTATGCAAACGGTTCAAA+CGG - chr1.1:56944894-56944913 None:intergenic 35.0%
TAAACCCATAGCCTTCTAAA+AGG + chr1.1:56944909-56944928 MS.gene52946:intron 35.0%
TAAACTAGTGTTGCCAATAG+TGG + chr1.1:56945696-56945715 MS.gene52946:intron 35.0%
TATAGTACCTTGTTGAACTG+GGG + chr1.1:56944771-56944790 MS.gene52946:intron 35.0%
TCAGAGAAAATACACTTCTC+TGG - chr1.1:56945332-56945351 None:intergenic 35.0%
TCTTTAGTACTTTCTTGGAC+AGG + chr1.1:56943126-56943145 MS.gene52946:intron 35.0%
TGAATTATTGTGATAGGACC+CGG + chr1.1:56945095-56945114 MS.gene52946:intron 35.0%
TGAGAAAAAGAAAGAGGTTG+TGG + chr1.1:56944123-56944142 MS.gene52946:CDS 35.0%
TGAGACCCAAAATTTGTAGT+GGG - chr1.1:56942829-56942848 None:intergenic 35.0%
TGTCAAATTACAACTTCCTC+TGG - chr1.1:56945898-56945917 None:intergenic 35.0%
TTATGACTACACTTCGGATT+TGG - chr1.1:56943636-56943655 None:intergenic 35.0%
TTCTCTGCAAGCAGATAATA+GGG - chr1.1:56945778-56945797 None:intergenic 35.0%
TTTATATACTGTAGGCATCC+TGG + chr1.1:56945589-56945608 MS.gene52946:intron 35.0%
TTTATGCTACATCAAAGGAC+AGG + chr1.1:56946008-56946027 MS.gene52946:CDS 35.0%
TTTCTCTGCAAGCAGATAAT+AGG - chr1.1:56945779-56945798 None:intergenic 35.0%
! AAACCCATAGCCTTCTAAAA+GGG + chr1.1:56944910-56944929 MS.gene52946:intron 35.0%
! ACAACCTTGCTATAATCAAC+TGG + chr1.1:56944946-56944965 MS.gene52946:intron 35.0%
! GATGTAGCATAAAGCATCTT+CGG - chr1.1:56946001-56946020 None:intergenic 35.0%
! GGTTGATTCCTCATATTATG+CGG + chr1.1:56942867-56942886 MS.gene52946:intron 35.0%
! GTTCTTCCCACTACAAATTT+TGG + chr1.1:56942820-56942839 MS.gene52946:intron 35.0%
! TACAGTTTCCCCTTTTTGAT+TGG + chr1.1:56943774-56943793 MS.gene52946:intron 35.0%
! TGTGACCATCTTGTTATAAG+CGG + chr1.1:56945255-56945274 MS.gene52946:intron 35.0%
! TTTTCTGCTTACATATGGAG+AGG + chr1.1:56945811-56945830 MS.gene52946:intron 35.0%
!! AAAACCCTTTTAGAAGGCTA+TGG - chr1.1:56944917-56944936 None:intergenic 35.0%
!! AAACCCTTTTAGAAGGCTAT+GGG - chr1.1:56944916-56944935 None:intergenic 35.0%
!! AGAAGTGTATTTTCTCTGAG+AGG + chr1.1:56945333-56945352 MS.gene52946:intron 35.0%
!! GATTATTAAGTGTTGGGATC+CGG + chr1.1:56943449-56943468 MS.gene52946:intron 35.0%
!! GCTGTATTTTTGAATGGAGT+AGG + chr1.1:56944687-56944706 MS.gene52946:intron 35.0%
!! TCTACAATCATTTTCAGGCA+AGG - chr1.1:56944197-56944216 None:intergenic 35.0%
!! TGCCAAGCTGTATTTTTGAA+TGG + chr1.1:56944681-56944700 MS.gene52946:intron 35.0%
!! TTTGGGGGAGTTGATTATTT+TGG + chr1.1:56943948-56943967 MS.gene52946:intron 35.0%
AAGTGAATTGCCCACTTTAG+AGG - chr1.1:56943477-56943496 None:intergenic 40.0%
AGAAGAATGTAGGAAACGGA+GGG + chr1.1:56945188-56945207 MS.gene52946:intron 40.0%
AGGCTATGGGTTTATGCAAA+CGG - chr1.1:56944903-56944922 None:intergenic 40.0%
AGTTGTCCAAATCCATTGTG+TGG + chr1.1:56945154-56945173 MS.gene52946:intron 40.0%
ATCAAAGGACAGGTTCAGAA+GGG + chr1.1:56946018-56946037 MS.gene52946:CDS 40.0%
CTCGTTCAGATTTCTGTCTT+CGG - chr1.1:56944454-56944473 None:intergenic 40.0%
CTGAGACCCAAAATTTGTAG+TGG - chr1.1:56942830-56942849 None:intergenic 40.0%
GAAGACAGAAATCTGAACGA+GGG + chr1.1:56944453-56944472 MS.gene52946:intron 40.0%
GAATTATTGTGATAGGACCC+GGG + chr1.1:56945096-56945115 MS.gene52946:intron 40.0%
GATACCATATATGTAGCCAC+TGG - chr1.1:56945504-56945523 None:intergenic 40.0%
GCAAAGTGTGAAGATAGAGA+TGG - chr1.1:56945837-56945856 None:intergenic 40.0%
GGAAAATAATGTGACGTGGT+AGG + chr1.1:56945209-56945228 MS.gene52946:intron 40.0%
GGAAACTGTAAATATTCCCG+GGG - chr1.1:56943764-56943783 None:intergenic 40.0%
GGGAAACTGTAAATATTCCC+GGG - chr1.1:56943765-56943784 None:intergenic 40.0%
GGGGAAACTGTAAATATTCC+CGG - chr1.1:56943766-56943785 None:intergenic 40.0%
GTAAGATATATCTCATGCCC+CGG + chr1.1:56943744-56943763 MS.gene52946:intron 40.0%
GTTGTCCAAATCCATTGTGT+GGG + chr1.1:56945155-56945174 MS.gene52946:intron 40.0%
TAAGATATATCTCATGCCCC+GGG + chr1.1:56943745-56943764 MS.gene52946:intron 40.0%
TAGAAGAATGTAGGAAACGG+AGG + chr1.1:56945187-56945206 MS.gene52946:intron 40.0%
TATCCCAGTGGCTACATATA+TGG + chr1.1:56945497-56945516 MS.gene52946:intron 40.0%
TCAAAGCAACTTCATGCATG+AGG - chr1.1:56943271-56943290 None:intergenic 40.0%
TGAAATGAATCCCAGCAATG+AGG - chr1.1:56943905-56943924 None:intergenic 40.0%
TGTAGGGAAATGCATCTTCT+GGG + chr1.1:56944017-56944036 MS.gene52946:intron 40.0%
TTGTAGGGAAATGCATCTTC+TGG + chr1.1:56944016-56944035 MS.gene52946:intron 40.0%
TTGTCCAAATCCATTGTGTG+GGG + chr1.1:56945156-56945175 MS.gene52946:intron 40.0%
TTTGGATCACATTCTCATCC+CGG - chr1.1:56945117-56945136 None:intergenic 40.0%
! CCAAAATCAGCATGGTCTTA+AGG - chr1.1:56942738-56942757 None:intergenic 40.0%
! GACCCCTTTCTTTTAGTATC+TGG + chr1.1:56944987-56945006 MS.gene52946:intron 40.0%
! GTGACCATCTTGTTATAAGC+GGG + chr1.1:56945256-56945275 MS.gene52946:intron 40.0%
!! GTCGGATTTTATTGGTTGCA+TGG + chr1.1:56942786-56942805 MS.gene52946:intron 40.0%
!! TGTTTGGCAGAGCATTCTTT+TGG - chr1.1:56943873-56943892 None:intergenic 40.0%
!!! ATGCTGTTTTCCTCATTGCT+GGG + chr1.1:56943892-56943911 MS.gene52946:intron 40.0%
!!! CCTTAAGACCATGCTGATTT+TGG + chr1.1:56942735-56942754 MS.gene52946:intron 40.0%
AACCTGTGAAGCATAGACAC+TGG + chr1.1:56943344-56943363 MS.gene52946:intron 45.0%
ACCATGTTGCGTTAAACCAG+AGG + chr1.1:56945879-56945898 MS.gene52946:intron 45.0%
AGATTGTCGATCTTGAGACC+AGG - chr1.1:56945610-56945629 None:intergenic 45.0%
ATTGCTACTAGCGTCAGTGT+CGG - chr1.1:56943378-56943397 None:intergenic 45.0%
CATCAAAGGACAGGTTCAGA+AGG + chr1.1:56946017-56946036 MS.gene52946:CDS 45.0%
CCTACCCGCTTATAACAAGA+TGG - chr1.1:56945263-56945282 None:intergenic 45.0%
CGAAGACAGAAATCTGAACG+AGG + chr1.1:56944452-56944471 MS.gene52946:intron 45.0%
CTGTTGCCTGAATCTCATAG+TGG - chr1.1:56946057-56946076 None:intergenic 45.0%
GAGGTTGTGGTCGAAAAAAC+TGG + chr1.1:56944136-56944155 MS.gene52946:CDS 45.0%
GCACATTTCAGGAATTGCAG+AGG + chr1.1:56944065-56944084 MS.gene52946:CDS 45.0%
GGAGGGAAAATAATGTGACG+TGG + chr1.1:56945205-56945224 MS.gene52946:intron 45.0%
GGGAATCCACTATGAGATTC+AGG + chr1.1:56946048-56946067 MS.gene52946:CDS 45.0%
GTTGTGGTCGAAAAAACTGG+AGG + chr1.1:56944139-56944158 MS.gene52946:CDS 45.0%
TAACATCACACCCCACACAA+TGG - chr1.1:56945169-56945188 None:intergenic 45.0%
TTGGATCACATTCTCATCCC+GGG - chr1.1:56945116-56945135 None:intergenic 45.0%
! ACTTCGAGTTCCATCTCTGT+TGG - chr1.1:56946082-56946101 None:intergenic 45.0%
! ATTGCCCACTTTAGAGGATC+CGG - chr1.1:56943471-56943490 None:intergenic 45.0%
! CCATCTTGTTATAAGCGGGT+AGG + chr1.1:56945260-56945279 MS.gene52946:intron 45.0%
! CTTCGAGTTCCATCTCTGTT+GGG - chr1.1:56946081-56946100 None:intergenic 45.0%
! TCAGCATTGTCGGTTGAGAT+AGG - chr1.1:56942968-56942987 None:intergenic 45.0%
! TCCTCTGGTTTAACGCAACA+TGG - chr1.1:56945883-56945902 None:intergenic 45.0%
! TCTTGTTATAAGCGGGTAGG+AGG + chr1.1:56945263-56945282 MS.gene52946:intron 45.0%
!! GGAAATGCATCTTCTGGGAT+GGG + chr1.1:56944022-56944041 MS.gene52946:CDS 45.0%
!!! CATGCTGTTTTCCTCATTGC+TGG + chr1.1:56943891-56943910 MS.gene52946:intron 45.0%
AATGTGACGTGGTAGGGGAT+GGG + chr1.1:56945216-56945235 MS.gene52946:intron 50.0%
ACGATCGTTTCCGAGCGAAA+GGG - chr1.1:56943005-56943024 None:intergenic 50.0%
ATGCAGTCCCCAGTTCAACA+AGG - chr1.1:56944781-56944800 None:intergenic 50.0%
ATGGCTTTCAGAGTGGGAGT+TGG + chr1.1:56942666-56942685 MS.gene52946:CDS 50.0%
CGCATCATACTGTATCCCAG+TGG + chr1.1:56945485-56945504 MS.gene52946:intron 50.0%
CTTTCAGAGTGGGAGTTGGA+GGG + chr1.1:56942670-56942689 MS.gene52946:CDS 50.0%
GCAGAGCGTAAGCACATTTC+AGG + chr1.1:56944054-56944073 MS.gene52946:CDS 50.0%
GGACGAATACGAGCTACAGA+AGG - chr1.1:56945980-56945999 None:intergenic 50.0%
GTCCAGTGTCTATGCTTCAC+AGG - chr1.1:56943349-56943368 None:intergenic 50.0%
GTGTGTTAGACCCTTTCGCT+CGG + chr1.1:56942992-56943011 MS.gene52946:intron 50.0%
GTTATAAGCGGGTAGGAGGA+GGG + chr1.1:56945267-56945286 MS.gene52946:intron 50.0%
TAATGTGACGTGGTAGGGGA+TGG + chr1.1:56945215-56945234 MS.gene52946:intron 50.0%
TGAGAGGAGCCTAGCTATGT+GGG + chr1.1:56945349-56945368 MS.gene52946:intron 50.0%
TGTTATAAGCGGGTAGGAGG+AGG + chr1.1:56945266-56945285 MS.gene52946:intron 50.0%
TTTCAGAGTGGGAGTTGGAG+GGG + chr1.1:56942671-56942690 MS.gene52946:CDS 50.0%
! CACACCCCACACAATGGATT+TGG - chr1.1:56945163-56945182 None:intergenic 50.0%
! GGGAAATGCATCTTCTGGGA+TGG + chr1.1:56944021-56944040 MS.gene52946:intron 50.0%
! TGCATGCACATTTTGTGCCC+TGG + chr1.1:56943720-56943739 MS.gene52946:intron 50.0%
!! GGATCCGGATCCTCTAAAGT+GGG + chr1.1:56943464-56943483 MS.gene52946:intron 50.0%
AGGTTCAGAAGGGAGCTGCA+GGG + chr1.1:56946028-56946047 MS.gene52946:CDS 55.0%
ATGTGACGTGGTAGGGGATG+GGG + chr1.1:56945217-56945236 MS.gene52946:intron 55.0%
CACGATCGTTTCCGAGCGAA+AGG - chr1.1:56943006-56943025 None:intergenic 55.0%
CCTAGCTATGTGGGTAGAGG+AGG + chr1.1:56945358-56945377 MS.gene52946:intron 55.0%
CCTCCTCTACCCACATAGCT+AGG - chr1.1:56945361-56945380 None:intergenic 55.0%
CTGAGAGGAGCCTAGCTATG+TGG + chr1.1:56945348-56945367 MS.gene52946:intron 55.0%
GAGCCTAGCTATGTGGGTAG+AGG + chr1.1:56945355-56945374 MS.gene52946:intron 55.0%
GATGGAACTCGAAGTCCTCC+AGG + chr1.1:56946087-56946106 MS.gene52946:CDS 55.0%
GCTTTCAGAGTGGGAGTTGG+AGG + chr1.1:56942669-56942688 MS.gene52946:CDS 55.0%
GGCAACAGACCCAACAGAGA+TGG + chr1.1:56946069-56946088 MS.gene52946:CDS 55.0%
! GGGATCCGGATCCTCTAAAG+TGG + chr1.1:56943463-56943482 MS.gene52946:intron 55.0%
CAGGTTCAGAAGGGAGCTGC+AGG + chr1.1:56946027-56946046 MS.gene52946:CDS 60.0%
GGGTAGGAGGAGGGAGAGAA+AGG + chr1.1:56945276-56945295 MS.gene52946:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 56942666 56946123 56942666 ID=MS.gene52946
chr1.1 mRNA 56942666 56946123 56942666 ID=MS.gene52946.t1;Parent=MS.gene52946
chr1.1 exon 56942666 56942692 56942666 ID=MS.gene52946.t1.exon1;Parent=MS.gene52946.t1
chr1.1 CDS 56942666 56942692 56942666 ID=cds.MS.gene52946.t1;Parent=MS.gene52946.t1
chr1.1 exon 56944022 56944287 56944022 ID=MS.gene52946.t1.exon2;Parent=MS.gene52946.t1
chr1.1 CDS 56944022 56944287 56944022 ID=cds.MS.gene52946.t1;Parent=MS.gene52946.t1
chr1.1 exon 56945973 56946123 56945973 ID=MS.gene52946.t1.exon3;Parent=MS.gene52946.t1
chr1.1 CDS 56945973 56946123 56945973 ID=cds.MS.gene52946.t1;Parent=MS.gene52946.t1
Gene Sequence

>MS.gene52946

ATGGCTTTCAGAGTGGGAGTTGGAGGGGTAAGCTTCCATCTTCATTCTATCATTTTTTTTTTTAATTTTCCTTAAGACCATGCTGATTTTGGTTTGATTTCATCGAATGTTGTTGTTTTTGTCGGATTTTATTGGTTGCATGGCTGATTTTGATGTTCTTCCCACTACAAATTTTGGGTCTCAGTTTTAATTTTGCTTTGTGGTTGATTCCTCATATTATGCGGTTTTTCTTGTTTTGAATATACCATATATTTTTCAATCATGTTTTTCTTGATTCGATGCTAAAATGTTTAGTAAGACCTATCTCAACCGACAATGCTGATATTGTGTGTTAGACCCTTTCGCTCGGAAACGATCGTGAAGAAAGAAAAAAACAATTTTAAAGATATTGTAGATGTTTCTCACTTCTTTTTTTCAAAAGAAATTTGTCTACATTTGAATAAAATTTTCTGAGGGCATGTCTTTAGTACTTTCTTGGACAGGTGATTATTAAGCTTTGAAATGACCAAAATGCGAAGATATATGTTTTGTTTAAATTCCAATGATGTTAAGAAATTAGGCTTGAAATTGTCAAATGAAATCTTGTGCGGTACTTCATTTTTCCTCATGCATGAAGTTGCTTTGAGTTACAAGTAGCTTTAAGGATGCCCATTTTTGCATTCTTTCTATGGTGTCAGAAACCTGTGAAGCATAGACACTGGACATGACACCGACACTGACGCTAGTAGCAATATATAAGTGATTGAATGTACATGTGTCGGACACTAGACACCCCTTTGATATGATTATTAAGTGTTGGGATCCGGATCCTCTAAAGTGGGCAATTCACTTTTAGAGTGCAAGCTGAGTAATATCAATTATTAGATTATAAGTTAAATGTAGATAGTGTAGGTACATTATAACGAATCACAAGTTAAAATAACAACCCTTGATTTTCTCACTTTATACTCTAGTCACTTTTGAGGATCCAAATCCGAAGTGTAGTCATAAACTTCTCTTAAGCTAGAATAGTAGACACTTACTGTGAACTTTGACTTATTTTTTGCACACTTACTGCATGCACATTTTGTGCCCTGGAGTAAGATATATCTCATGCCCCGGGAATATTTACAGTTTCCCCTTTTTGATTGGTGATTTAGTTATATTTTCTTGACATAAAGAGCTTTTAAATTTAAAAAAAAAAAAAAAGAAGCAGTCATTTTCTCCAAAAGAATGCTCTGCCAAACATGCTGTTTTCCTCATTGCTGGGATTCATTTCATTGAAAGGACTTTAGTATTCTTTTTTGGGGGAGTTGATTATTTTGGTTTGAAAAAAGGATTGGAATTTCGTGTAACTAATATGTGGATTTGTTGTAGGGAAATGCATCTTCTGGGATGGGTGTTGCTGAGCAGAGCGTAAGCACATTTCAGGAATTGCAGAGGAAGAAAGTATATCGCTATGTGATTTTCAAAATTGATGAGAAAAAGAAAGAGGTTGTGGTCGAAAAAACTGGAGGCCCTTCTGAGAGCTATGATGATTTCACTGCATCCTTGCCTGAAAATGATTGTAGATATGCAGTCTTTGACTTTGATTTCGTGACTGCTGAGAACTGCCAAAAGAGCAAAATCTTTTTTATCGCATGGTCAGTTACTTAGTTTCTTGTACAGTCATAGACTCTGTATATTAACTTACTCAATTTTTCTTGCATTGGTTTTAGTATACAGTGTGTTACATATGTATATATTGCATTTGGATGTTGCATGCTTGCATTCAAGACTTAAAACACTGATTTATTATTTTATAAACCGAAGACAGAAATCTGAACGAGGGCACTGTAACGATACAATTCTCTAGTATATTCTCTTGATTTCATTCATCTATCTTATTGACTTTCCTAGCATAATCAAACTATTCTTCATAATGCCTATTCTTAATCTTCATGGGTGGGTGACTCAAGTGTTCAGAACATGACTTTTTCACATAATCTATTAAGTTTTATTAGATAGGGAGCATATTGCTAATTTACTAGGGTATATGCCAAGCTGTATTTTTGAATGGAGTAGGGGTAAGTTCTTGAACTGTTTGTATGTGATTAAGCAAAAATTAATGTCTATTAGTCTATTACTATAGTACCTTGTTGAACTGGGGACTGCATTTTAGACTTCAAGCACATTTCCAAAAATCATTTCAAATTCCAGACTCTTGATAAAAAATGCTTTTGATATTTGGCAAAAGGCAGTACTAACCGTTTGAACCGTTTGCATAAACCCATAGCCTTCTAAAAGGGTTTTTTATTTGACACAACCTTGCTATAATCAACTGGTATGCTACACTGTTTTTAGACCCCTTTCTTTTAGTATCTGGTTGTATTTTTCAGATTTCCAATACTTGATTATATTTGTCTCGGTCTCCAAATTCATGTGATTGTTGTTTTGCCTTTCCATTCATATGAATTATTGTGATAGGACCCGGGATGAGAATGTGATCCAAATAGGCAATTAGTTTATCAGTTGTCCAAATCCATTGTGTGGGGTGTGATGTTAGAAGAATGTAGGAAACGGAGGGAAAATAATGTGACGTGGTAGGGGATGGGGTGAGCAAGTGTGTTGTGTGACCATCTTGTTATAAGCGGGTAGGAGGAGGGAGAGAAAGGCATGCAGTCTGATGTATTATTTCTGTTTGGCCAGAGAAGTGTATTTTCTCTGAGAGGAGCCTAGCTATGTGGGTAGAGGAGGATTCATCCCTTTCTGCAATCTACTTTCGTTACCATCAATAATATTCTGCAATTGTTTTTCAGTCTTCCAAATCACTGTTAATTCTGTATGTTTGGTATCGGATTCGCATCATACTGTATCCCAGTGGCTACATATATGGTATCTTAAACTATCTCTCAACCTTTTTTATTCATTTTTGTGTTGATTTTTCTTTTGGGTGTTTAATTAGTTTATATACTGTAGGCATCCTGGTCTCAAGATCGACAATCTTAAATTAATTTATATACATCAGAATCATGGTCTCAAGATCGACAATCTTAAAAAAAACTTTGGTTTTAAACTAGTGTTGCCAATAGTGGATTGCAAAAAAAATAGCGGTTTGTTCAAATTCCGTTACGCTACAATACTATAATGTCCCTATTATCTGCTTGCAGAGAAAATTCACTTTTTATTTTCTGCTTACATATGGAGAGGCCATCTCTATCTTCACACTTTGCAGAGAAAACTCACCTTTCATTTACCATGTTGCGTTAAACCAGAGGAAGTTGTAATTTGACAAATTTTTTGTTGCCTTTATTTTGCTTGAGTTTACTAATGGATAATTGCTTTACAGGTCTCCTTCTGTAGCTCGTATTCGTCCGAAGATGCTTTATGCTACATCAAAGGACAGGTTCAGAAGGGAGCTGCAGGGAATCCACTATGAGATTCAGGCAACAGACCCAACAGAGATGGAACTCGAAGTCCTCCAGGAGCGTGCGAACTAA

Protein sequence

>MS.gene52946.t1

MAFRVGVGGGNASSGMGVAEQSVSTFQELQRKKVYRYVIFKIDEKKKEVVVEKTGGPSESYDDFTASLPENDCRYAVFDFDFVTAENCQKSKIFFIAWSPSVARIRPKMLYATSKDRFRRELQGIHYEIQATDPTEMELEVLQERAN