Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54787.t1 | XP_003591930.2 | 96.2 | 873 | 30 | 1 | 1 | 870 | 1 | 873 | 0.00E+00 | 1728.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54787.t1 | Q6TAS3 | 64.3 | 857 | 270 | 8 | 39 | 870 | 47 | 892 | 0.0e+00 | 1096.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54787.t1 | G7I3B8 | 96.2 | 873 | 30 | 1 | 1 | 870 | 1 | 873 | 0.0e+00 | 1728.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049378 | MS.gene54787 | 0.860766 | 1.64E-63 | -1.69E-46 |
MS.gene04991 | MS.gene54787 | -0.805277 | 1.44E-49 | -1.69E-46 |
MS.gene050227 | MS.gene54787 | 0.80606 | 9.88E-50 | -1.69E-46 |
MS.gene050623 | MS.gene54787 | -0.817189 | 3.75E-52 | -1.69E-46 |
MS.gene050762 | MS.gene54787 | 0.817621 | 3.00E-52 | -1.69E-46 |
MS.gene050763 | MS.gene54787 | 0.81857 | 1.83E-52 | -1.69E-46 |
MS.gene051983 | MS.gene54787 | 0.803115 | 4.07E-49 | -1.69E-46 |
MS.gene052077 | MS.gene54787 | 0.83245 | 9.39E-56 | -1.69E-46 |
MS.gene052376 | MS.gene54787 | 0.800573 | 1.35E-48 | -1.69E-46 |
MS.gene052389 | MS.gene54787 | 0.819247 | 1.28E-52 | -1.69E-46 |
MS.gene052420 | MS.gene54787 | 0.826516 | 2.60E-54 | -1.69E-46 |
MS.gene054379 | MS.gene54787 | 0.83654 | 8.81E-57 | -1.69E-46 |
MS.gene054930 | MS.gene54787 | 0.843589 | 1.28E-58 | -1.69E-46 |
MS.gene055163 | MS.gene54787 | 0.815594 | 8.53E-52 | -1.69E-46 |
MS.gene055701 | MS.gene54787 | 0.832249 | 1.05E-55 | -1.69E-46 |
MS.gene057126 | MS.gene54787 | 0.81201 | 5.26E-51 | -1.69E-46 |
MS.gene057929 | MS.gene54787 | 0.809506 | 1.83E-50 | -1.69E-46 |
MS.gene058435 | MS.gene54787 | 0.812779 | 3.57E-51 | -1.69E-46 |
MS.gene058503 | MS.gene54787 | 0.817292 | 3.56E-52 | -1.69E-46 |
MS.gene059285 | MS.gene54787 | 0.804291 | 2.32E-49 | -1.69E-46 |
MS.gene060084 | MS.gene54787 | 0.801515 | 8.68E-49 | -1.69E-46 |
MS.gene060869 | MS.gene54787 | 0.809174 | 2.16E-50 | -1.69E-46 |
MS.gene060940 | MS.gene54787 | 0.84913 | 3.94E-60 | -1.69E-46 |
MS.gene060942 | MS.gene54787 | 0.820591 | 6.32E-53 | -1.69E-46 |
MS.gene060998 | MS.gene54787 | 0.804794 | 1.82E-49 | -1.69E-46 |
MS.gene061002 | MS.gene54787 | 0.830454 | 2.91E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54787.t1 | MTR_1g095360 | 96.220 | 873 | 30 | 1 | 1 | 870 | 1 | 873 | 0.0 | 1756 |
MS.gene54787.t1 | MTR_1g095360 | 92.325 | 873 | 29 | 2 | 1 | 870 | 1 | 838 | 0.0 | 1668 |
MS.gene54787.t1 | MTR_0735s0010 | 76.471 | 102 | 21 | 1 | 1 | 99 | 1 | 102 | 2.10e-44 | 156 |
MS.gene54787.t1 | MTR_3g070290 | 30.266 | 413 | 214 | 11 | 492 | 854 | 192 | 580 | 1.17e-43 | 168 |
MS.gene54787.t1 | MTR_3g467000 | 30.266 | 413 | 214 | 12 | 492 | 854 | 191 | 579 | 2.33e-43 | 167 |
MS.gene54787.t1 | MTR_3g076770 | 30.966 | 352 | 205 | 8 | 532 | 854 | 240 | 582 | 5.70e-41 | 160 |
MS.gene54787.t1 | MTR_1g114520 | 29.551 | 423 | 219 | 11 | 490 | 866 | 156 | 545 | 1.96e-34 | 139 |
MS.gene54787.t1 | MTR_1g033480 | 31.250 | 256 | 106 | 10 | 80 | 328 | 71 | 263 | 2.47e-22 | 98.2 |
MS.gene54787.t1 | MTR_7g011400 | 27.869 | 183 | 128 | 3 | 688 | 869 | 60 | 239 | 1.65e-13 | 72.0 |
MS.gene54787.t1 | MTR_4g076520 | 27.083 | 192 | 135 | 5 | 669 | 859 | 360 | 547 | 8.41e-13 | 72.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54787.t1 | AT2G28880 | 60.964 | 871 | 299 | 6 | 38 | 869 | 44 | 912 | 0.0 | 1056 |
MS.gene54787.t1 | AT2G29690 | 30.976 | 410 | 239 | 10 | 492 | 866 | 198 | 598 | 3.07e-45 | 173 |
MS.gene54787.t1 | AT3G55870 | 30.446 | 404 | 230 | 11 | 490 | 854 | 74 | 465 | 1.21e-40 | 157 |
MS.gene54787.t1 | AT5G05730 | 29.833 | 419 | 232 | 12 | 480 | 854 | 173 | 573 | 4.32e-40 | 157 |
MS.gene54787.t1 | AT3G55870 | 30.446 | 404 | 230 | 11 | 490 | 854 | 173 | 564 | 5.38e-40 | 157 |
MS.gene54787.t1 | AT5G05730 | 29.148 | 446 | 229 | 14 | 480 | 854 | 173 | 602 | 7.63e-39 | 154 |
MS.gene54787.t1 | AT2G29690 | 29.747 | 316 | 196 | 10 | 492 | 790 | 198 | 504 | 2.38e-29 | 123 |
MS.gene54787.t1 | AT3G55870 | 29.245 | 318 | 193 | 10 | 490 | 787 | 173 | 478 | 1.84e-25 | 111 |
MS.gene54787.t1 | AT5G57890 | 31.225 | 253 | 110 | 9 | 80 | 328 | 73 | 265 | 1.02e-22 | 99.4 |
MS.gene54787.t1 | AT1G25220 | 31.225 | 253 | 110 | 9 | 80 | 328 | 76 | 268 | 1.09e-22 | 99.4 |
MS.gene54787.t1 | AT1G25155 | 30.830 | 253 | 111 | 9 | 80 | 328 | 22 | 214 | 5.98e-22 | 95.9 |
MS.gene54787.t1 | AT1G25083 | 30.830 | 253 | 111 | 9 | 80 | 328 | 22 | 214 | 5.98e-22 | 95.9 |
MS.gene54787.t1 | AT1G24909 | 30.830 | 253 | 111 | 9 | 80 | 328 | 22 | 214 | 5.98e-22 | 95.9 |
MS.gene54787.t1 | AT1G25220 | 30.189 | 265 | 110 | 10 | 80 | 328 | 76 | 281 | 1.85e-20 | 93.2 |
MS.gene54787.t1 | AT1G24807 | 29.811 | 265 | 111 | 10 | 80 | 328 | 22 | 227 | 8.31e-20 | 90.1 |
MS.gene54787.t1 | AT1G74710 | 28.796 | 191 | 131 | 4 | 669 | 858 | 363 | 549 | 2.99e-13 | 73.9 |
MS.gene54787.t1 | AT1G74710 | 28.571 | 203 | 139 | 5 | 669 | 870 | 363 | 560 | 4.09e-13 | 73.6 |
MS.gene54787.t1 | AT1G18870 | 29.143 | 175 | 120 | 4 | 685 | 858 | 373 | 544 | 5.19e-13 | 73.2 |
MS.gene54787.t1 | AT1G18870 | 29.651 | 172 | 117 | 4 | 688 | 858 | 326 | 494 | 6.37e-13 | 72.8 |
Find 191 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTCAATCGGTTTCCTTATC+TGG | 0.083920 | 1.2:+72984414 | None:intergenic |
AAATGATGATGTTTATTTAT+TGG | 0.138927 | 1.2:-72984675 | MS.gene54787:CDS |
AATAGGACACTTCCATTTAT+TGG | 0.140688 | 1.2:-72988241 | MS.gene54787:CDS |
ATCTCTTCGTATTCGTCTTC+TGG | 0.192553 | 1.2:+72983514 | None:intergenic |
GAGAGATTACAGATGATTAT+TGG | 0.221662 | 1.2:-72987884 | MS.gene54787:CDS |
ATGCAGGGATATTCCTATTC+TGG | 0.268177 | 1.2:-72990769 | MS.gene54787:CDS |
GCTAGAAGCTAAGCCCATTA+AGG | 0.273961 | 1.2:-72984249 | MS.gene54787:CDS |
TTCTGTCAAAACAATATTCT+TGG | 0.274266 | 1.2:-72986529 | MS.gene54787:CDS |
TAGAAATGCAGGGGTTCTTA+TGG | 0.283438 | 1.2:-72988098 | MS.gene54787:CDS |
ACGAGCTATAGTACCCTTAA+TGG | 0.290221 | 1.2:+72984235 | None:intergenic |
ATTTATTGGATCCGAGGTTT+TGG | 0.298084 | 1.2:-72988227 | MS.gene54787:CDS |
CTATTTGAAGTCCATGCTAT+TGG | 0.298195 | 1.2:+72988259 | None:intergenic |
GACACTTCTTAACATCTCTA+AGG | 0.313097 | 1.2:+72984483 | None:intergenic |
GAACTTCCGTTTCCTGCTTC+AGG | 0.314406 | 1.2:+72988145 | None:intergenic |
ATACCTTCTGGTAGAAATTC+TGG | 0.316634 | 1.2:-72989561 | MS.gene54787:CDS |
TGATTCTCACCTATATCTTC+TGG | 0.321594 | 1.2:+72991847 | None:intergenic |
AAAACCTCGGATCCAATAAA+TGG | 0.325149 | 1.2:+72988229 | None:intergenic |
CAGAATCTTCCAGTGATAAA+TGG | 0.331158 | 1.2:+72986556 | None:intergenic |
AGTATATTCTGTCAGTTGTT+TGG | 0.333061 | 1.2:-72987158 | MS.gene54787:CDS |
TCTCTTCGTATTCGTCTTCT+GGG | 0.362497 | 1.2:+72983515 | None:intergenic |
GAGAAGCTTCTGAGCTTAAC+TGG | 0.362909 | 1.2:-72984602 | MS.gene54787:CDS |
CAATAGCATGGACTTCAAAT+AGG | 0.365417 | 1.2:-72988258 | MS.gene54787:CDS |
AGTTCAAGCCTTGTTGACTA+TGG | 0.367257 | 1.2:-72988127 | MS.gene54787:CDS |
ACAAAACTTTGAAGTTGAAA+TGG | 0.368700 | 1.2:-72987223 | MS.gene54787:CDS |
AACCCTTGCCAAGGAGGGTC+TGG | 0.379775 | 1.2:+72992618 | None:intergenic |
TGGTAGAAATTCTGGTTTCA+AGG | 0.385639 | 1.2:-72989553 | MS.gene54787:intron |
AGGAAGCTGAAAACACCTTT+TGG | 0.386030 | 1.2:-72987133 | MS.gene54787:CDS |
ATTGAGGTATTAAATTCTCT+TGG | 0.386994 | 1.2:-72984398 | MS.gene54787:CDS |
CTCAATCGGTTTCCTTATCT+GGG | 0.387674 | 1.2:+72984415 | None:intergenic |
GCTATTGGAATGAGCACTTC+AGG | 0.390822 | 1.2:+72988274 | None:intergenic |
TTCAAGTATTTCACAATGGT+TGG | 0.390964 | 1.2:-72984636 | MS.gene54787:CDS |
CCCTGAGAGGTTCCTGCAGT+TGG | 0.400432 | 1.2:-72984285 | MS.gene54787:CDS |
TAATCTATCACAGTGTTTGC+TGG | 0.401931 | 1.2:+72983472 | None:intergenic |
TGTGTCAAAGCTGCATTTCC+TGG | 0.402597 | 1.2:-72983742 | MS.gene54787:CDS |
AGAGAATTTAATACCTCAAT+CGG | 0.403042 | 1.2:+72984401 | None:intergenic |
TGGCAGGTTGCAACACTCTC+TGG | 0.403170 | 1.2:+72987933 | None:intergenic |
ATGATTATTGGCTGAGATGT+AGG | 0.404436 | 1.2:-72987872 | MS.gene54787:CDS |
CTAAATGGTCATGCATCAAT+TGG | 0.405593 | 1.2:+72992533 | None:intergenic |
TTTGGAAGCAGTTAACGTTC+AGG | 0.409857 | 1.2:-72986800 | MS.gene54787:CDS |
TTCAAATATTGCGTGAATGC+AGG | 0.416800 | 1.2:-72990785 | MS.gene54787:CDS |
AGGAAATTTGATCACTTGGC+TGG | 0.419221 | 1.2:-72987200 | MS.gene54787:CDS |
TTTACCTACATTTAAGAGAA+AGG | 0.420459 | 1.2:-72984373 | MS.gene54787:CDS |
CCCGTGGTTTGATAGGCATT+GGG | 0.423040 | 1.2:-72989822 | MS.gene54787:intron |
CTAGAAGCTAAGCCCATTAA+GGG | 0.423824 | 1.2:-72984248 | MS.gene54787:CDS |
AATTGCCCCTCCAGCTCCTA+TGG | 0.425604 | 1.2:+72983552 | None:intergenic |
TTTCCTGGTGGTTCGATGAC+AGG | 0.425849 | 1.2:-72983727 | MS.gene54787:CDS |
AGTTCCATTGATCTCAACTT+TGG | 0.425932 | 1.2:+72983700 | None:intergenic |
TCCAACTGCAGGAACCTCTC+AGG | 0.428773 | 1.2:+72984284 | None:intergenic |
TGGTTCTGTGAGGATGGATT+TGG | 0.430243 | 1.2:-72984582 | MS.gene54787:CDS |
GACCAAGGTCATTTCTTAGA+AGG | 0.440815 | 1.2:+72983887 | None:intergenic |
CCTATTCTGGGTGTTTGCCT+CGG | 0.440882 | 1.2:-72990756 | MS.gene54787:CDS |
TGTCCAGACCCTCCTTGGCA+AGG | 0.442463 | 1.2:-72992621 | MS.gene54787:CDS |
CCGGCATGCCCAGAAGATAT+AGG | 0.443381 | 1.2:-72991856 | MS.gene54787:intron |
TGCAGGGATATTCCTATTCT+GGG | 0.444432 | 1.2:-72990768 | MS.gene54787:CDS |
TACCTCAGACGCCCGTGAAC+TGG | 0.444477 | 1.2:+72989762 | None:intergenic |
TTAGAAGGTCAACAATCATC+AGG | 0.447823 | 1.2:+72983902 | None:intergenic |
GATTCCTTTCTCTTAAATGT+AGG | 0.447911 | 1.2:+72984369 | None:intergenic |
CTTGGTCGTGTATGTGATCC+TGG | 0.449044 | 1.2:-72983871 | MS.gene54787:CDS |
TATAGTGATGGGAGTTCAAA+AGG | 0.451018 | 1.2:-72986585 | MS.gene54787:intron |
CGAGCTATAGTACCCTTAAT+GGG | 0.451531 | 1.2:+72984236 | None:intergenic |
GATTCTCACCTATATCTTCT+GGG | 0.451656 | 1.2:+72991848 | None:intergenic |
CAAATACACAGATCTTCCTT+TGG | 0.452881 | 1.2:+72984317 | None:intergenic |
GTCCAGACCCTCCTTGGCAA+GGG | 0.458237 | 1.2:-72992620 | MS.gene54787:CDS |
GGCATCTACTCAGGCTGCAT+TGG | 0.460246 | 1.2:-72983649 | MS.gene54787:CDS |
GAATATTTGACTTCCGTGGC+AGG | 0.463423 | 1.2:+72987917 | None:intergenic |
ATCACCTGGACCTGGTTCTC+CGG | 0.463700 | 1.2:-72991875 | MS.gene54787:CDS |
CAGGACCTATCTATTATTAA+CGG | 0.464286 | 1.2:-72992403 | MS.gene54787:CDS |
TGACACCACATTCAACTTTG+AGG | 0.465437 | 1.2:+72984774 | None:intergenic |
AGAAATGCAGGGGTTCTTAT+GGG | 0.469281 | 1.2:-72988097 | MS.gene54787:CDS |
TGTTGACGTGCCGCATCTCA+TGG | 0.470293 | 1.2:-72983845 | MS.gene54787:CDS |
TGCGGCACGTCAACAGATCC+AGG | 0.484263 | 1.2:+72983853 | None:intergenic |
ACAAGTGCCTCTACAAAAGC+AGG | 0.484896 | 1.2:-72992482 | MS.gene54787:CDS |
CTTAACTGGTTCTGTGAGGA+TGG | 0.485235 | 1.2:-72984588 | MS.gene54787:CDS |
AAATTCAGCCAAGCCGCATA+AGG | 0.485476 | 1.2:+72984341 | None:intergenic |
AGCCAAGCCGCATAAGGTGC+TGG | 0.493373 | 1.2:+72984347 | None:intergenic |
TCAAATTGAAATTACAGCTC+AGG | 0.495889 | 1.2:-72984184 | MS.gene54787:intron |
CCGAGGCAAACACCCAGAAT+AGG | 0.495918 | 1.2:+72990756 | None:intergenic |
TCTGGGCATGCCGGAGAACC+AGG | 0.496218 | 1.2:+72991865 | None:intergenic |
CACTTGGCTGGGCAAGTTGG+TGG | 0.497533 | 1.2:-72987188 | MS.gene54787:CDS |
CGCACCAAAGTTGAGATCAA+TGG | 0.499946 | 1.2:-72983704 | MS.gene54787:CDS |
CCTATATCTTCTGGGCATGC+CGG | 0.500977 | 1.2:+72991856 | None:intergenic |
TCAATCATATCGTTATGATA+AGG | 0.501529 | 1.2:-72985717 | MS.gene54787:CDS |
CATTCTACAAGGCCACACTA+TGG | 0.502130 | 1.2:-72988067 | MS.gene54787:CDS |
CATGCCGGAGAACCAGGTCC+AGG | 0.506647 | 1.2:+72991871 | None:intergenic |
GGGTGTTTGCCTCGGACACC+AGG | 0.507562 | 1.2:-72990748 | MS.gene54787:intron |
ATTCTGTCAGTTGTTTGGAC+AGG | 0.509319 | 1.2:-72987153 | MS.gene54787:CDS |
AGAGGTTCCTGCAGTTGGAT+AGG | 0.511649 | 1.2:-72984280 | MS.gene54787:CDS |
ATCCAGCACCTTATGCGGCT+TGG | 0.512005 | 1.2:-72984349 | MS.gene54787:CDS |
GGAAATTTGATCACTTGGCT+GGG | 0.513958 | 1.2:-72987199 | MS.gene54787:CDS |
ATGGAGGAAATTTGATCACT+TGG | 0.515760 | 1.2:-72987204 | MS.gene54787:CDS |
TATCCGCCGTGAAAATCAAA+TGG | 0.517625 | 1.2:+72985677 | None:intergenic |
TATGGACAAACTAGAAATGC+AGG | 0.525839 | 1.2:-72988109 | MS.gene54787:CDS |
TGGTGATTCAAAATGATGAT+TGG | 0.526558 | 1.2:-72991957 | MS.gene54787:CDS |
GGTGAAGCTTCCATAGGAGC+TGG | 0.526688 | 1.2:-72983562 | MS.gene54787:CDS |
GCGGATATGTTGGTTACATC+GGG | 0.526889 | 1.2:-72985661 | MS.gene54787:intron |
GTCAAAACAATATTCTTGGA+AGG | 0.539340 | 1.2:-72986525 | MS.gene54787:CDS |
GGATAGTTCTTCCACAGAGA+TGG | 0.539959 | 1.2:-72987108 | MS.gene54787:intron |
TCAAATATTGCGTGAATGCA+GGG | 0.540876 | 1.2:-72990784 | MS.gene54787:CDS |
CGTTAATAATAGATAGGTCC+TGG | 0.541535 | 1.2:+72992404 | None:intergenic |
GAGGAAAAGGTGGATCACTT+TGG | 0.543864 | 1.2:-72986818 | MS.gene54787:CDS |
GATCACTTGGCTGGGCAAGT+TGG | 0.544459 | 1.2:-72987191 | MS.gene54787:CDS |
CGTGAACTGGTTCAGATGCA+TGG | 0.546538 | 1.2:+72989775 | None:intergenic |
CATGCATCTGAACCAGTTCA+CGG | 0.547761 | 1.2:-72989774 | MS.gene54787:CDS |
TGATTATTGGCTGAGATGTA+GGG | 0.548614 | 1.2:-72987871 | MS.gene54787:CDS |
TGTCTAAACTATATTAGAGA+TGG | 0.549780 | 1.2:-72984464 | MS.gene54787:CDS |
TACCACCGTTAATAATAGAT+AGG | 0.551799 | 1.2:+72992398 | None:intergenic |
GGAAAACGTGCTAATTCTGA+TGG | 0.553406 | 1.2:-72987834 | MS.gene54787:intron |
GGAAGAACTATCCAACCAAA+AGG | 0.553464 | 1.2:+72987118 | None:intergenic |
ATGCATCTGAACCAGTTCAC+GGG | 0.555574 | 1.2:-72989773 | MS.gene54787:CDS |
GAGAGTGTTGCAACCTGCCA+CGG | 0.555850 | 1.2:-72987930 | MS.gene54787:CDS |
TGTGCCTCACAACCCAGATA+AGG | 0.555986 | 1.2:-72984427 | MS.gene54787:CDS |
CCAACTGCAGGAACCTCTCA+GGG | 0.556382 | 1.2:+72984285 | None:intergenic |
AAAACAATATTCTTGGAAGG+AGG | 0.557570 | 1.2:-72986522 | MS.gene54787:CDS |
GGCGGATATGTTGGTTACAT+CGG | 0.559365 | 1.2:-72985662 | MS.gene54787:CDS |
CGTTCAGGTTGTCTGATCAG+AGG | 0.561324 | 1.2:-72986785 | MS.gene54787:intron |
GACATATGAGACGCAAAGAC+AGG | 0.561457 | 1.2:+72992677 | None:intergenic |
AGGTGGTGGCCATTTATCAC+TGG | 0.563009 | 1.2:-72986565 | MS.gene54787:CDS |
CTGTGAGGATGGATTTGGAA+AGG | 0.565191 | 1.2:-72984577 | MS.gene54787:CDS |
TGTTCTCGAGGCATCTACTC+AGG | 0.566022 | 1.2:-72983658 | MS.gene54787:CDS |
GCAGTGAAGTTGAGCACAAT+GGG | 0.566135 | 1.2:-72989602 | MS.gene54787:intron |
TCGTTCATGGGAGGAAAAGG+TGG | 0.567570 | 1.2:-72986828 | MS.gene54787:CDS |
CCAGATAAGGAAACCGATTG+AGG | 0.569130 | 1.2:-72984414 | MS.gene54787:CDS |
AAACCAGAATTTCTACCAGA+AGG | 0.570639 | 1.2:+72989558 | None:intergenic |
AACCAGTTCACGGGCGTCTG+AGG | 0.571689 | 1.2:-72989764 | MS.gene54787:intron |
AAGTGCTCATTCCAATAGCA+TGG | 0.571695 | 1.2:-72988270 | MS.gene54787:CDS |
TCTCTTGAAAGTTGTTCTCG+AGG | 0.572344 | 1.2:-72983670 | MS.gene54787:CDS |
AAGGCCACACTATGGTGTGC+AGG | 0.572554 | 1.2:-72988059 | MS.gene54787:intron |
TATGATAAGGATGAATATGA+AGG | 0.576693 | 1.2:-72985704 | MS.gene54787:CDS |
AAACTTTGAAGTTGAAATGG+AGG | 0.579267 | 1.2:-72987220 | MS.gene54787:CDS |
GATGTATGTAATCGCCGCGA+TGG | 0.582991 | 1.2:-72992577 | MS.gene54787:CDS |
AGCTTCCATAGGAGCTGGAG+GGG | 0.583104 | 1.2:-72983557 | MS.gene54787:CDS |
GCGCCTGTCATCGAACCACC+AGG | 0.583166 | 1.2:+72983724 | None:intergenic |
TTTGCTGTTCTTCCCCTGAG+AGG | 0.583316 | 1.2:-72984298 | MS.gene54787:CDS |
TATCACTCCTATCCAACTGC+AGG | 0.588529 | 1.2:+72984273 | None:intergenic |
TCTTGAATATTTGACTTCCG+TGG | 0.593391 | 1.2:+72987913 | None:intergenic |
GGTGGTTCGATATCATTCGC+TGG | 0.593671 | 1.2:-72988317 | MS.gene54787:CDS |
ACTTCCATTTATTGGATCCG+AGG | 0.593929 | 1.2:-72988233 | MS.gene54787:CDS |
TTATCACTGGAAGATTCTGA+AGG | 0.594083 | 1.2:-72986552 | MS.gene54787:CDS |
AAGAACAGTTGTTATACATG+AGG | 0.596678 | 1.2:-72983584 | MS.gene54787:CDS |
GTTTCCTTATCTGGGTTGTG+AGG | 0.596872 | 1.2:+72984423 | None:intergenic |
ACTTTCTTTAGCACATGCGC+AGG | 0.598971 | 1.2:-72987303 | MS.gene54787:intron |
TTCAAAATGATGATTGGACG+TGG | 0.599788 | 1.2:-72991951 | MS.gene54787:CDS |
TAGTTTGTCCATAGTCAACA+AGG | 0.602079 | 1.2:+72988119 | None:intergenic |
TAGGCATTGGGTTATGTGCA+TGG | 0.603761 | 1.2:-72989810 | MS.gene54787:CDS |
AGCTCGTGGTGCTACTGAGG+AGG | 0.604636 | 1.2:-72984219 | MS.gene54787:CDS |
GATGGGAGTTCAAAAGGTGG+TGG | 0.606255 | 1.2:-72986579 | MS.gene54787:CDS |
GACCTTCTAAGAAATGACCT+TGG | 0.607144 | 1.2:-72983889 | MS.gene54787:CDS |
CATGAGGGTGAAGCTTCCAT+AGG | 0.610810 | 1.2:-72983568 | MS.gene54787:CDS |
AGTGATGGGAGTTCAAAAGG+TGG | 0.612943 | 1.2:-72986582 | MS.gene54787:CDS |
CAATGGTGAGTACAATTCGT+GGG | 0.615391 | 1.2:-72983795 | MS.gene54787:CDS |
CAAGAAACCCTTGCCAAGGA+GGG | 0.615672 | 1.2:+72992613 | None:intergenic |
ACAATGGTGAGTACAATTCG+TGG | 0.620395 | 1.2:-72983796 | MS.gene54787:CDS |
GATAACATCGTATTATCACC+TGG | 0.621106 | 1.2:-72991889 | MS.gene54787:CDS |
GCCGCGATGGAAGAAACACT+AGG | 0.622994 | 1.2:-72992564 | MS.gene54787:CDS |
AAAGTTCAAGTATTTCACAA+TGG | 0.623372 | 1.2:-72984640 | MS.gene54787:CDS |
TATAGCTCGTGGTGCTACTG+AGG | 0.623391 | 1.2:-72984222 | MS.gene54787:CDS |
ACAAGAAACCCTTGCCAAGG+AGG | 0.625497 | 1.2:+72992612 | None:intergenic |
GAAGCTTCCATAGGAGCTGG+AGG | 0.628682 | 1.2:-72983559 | MS.gene54787:CDS |
GTCAAAGCTGCATTTCCTGG+TGG | 0.629738 | 1.2:-72983739 | MS.gene54787:CDS |
GAAACAAGAAACCCTTGCCA+AGG | 0.630796 | 1.2:+72992609 | None:intergenic |
AGAACAGTTGTTATACATGA+GGG | 0.631663 | 1.2:-72983583 | MS.gene54787:CDS |
AAGGAATCCAGCACCTTATG+CGG | 0.632251 | 1.2:-72984354 | MS.gene54787:CDS |
AGGGAAATACCTGGTGTCCG+AGG | 0.634630 | 1.2:+72990739 | None:intergenic |
AAGCTTCCATAGGAGCTGGA+GGG | 0.638739 | 1.2:-72983558 | MS.gene54787:CDS |
TGGGAGTCAAGCATTCTACA+AGG | 0.640874 | 1.2:-72988078 | MS.gene54787:CDS |
AACACCTGCACACCATAGTG+TGG | 0.641639 | 1.2:+72988055 | None:intergenic |
ACAATGGTTGGATGATACTG+AGG | 0.643513 | 1.2:-72984624 | MS.gene54787:CDS |
CCGCGATGGAAGAAACACTA+GGG | 0.646235 | 1.2:-72992563 | MS.gene54787:CDS |
ATGGACAAACTAGAAATGCA+GGG | 0.648256 | 1.2:-72988108 | MS.gene54787:CDS |
TTTCAGTGAAAAGGATCAGG+CGG | 0.648387 | 1.2:-72983929 | MS.gene54787:intron |
ATCGTATTATCACCTGGACC+TGG | 0.649380 | 1.2:-72991883 | MS.gene54787:CDS |
ATTGTACTTGTCCAAAACCT+CGG | 0.653172 | 1.2:+72988216 | None:intergenic |
ATGTAGGGCATCATACAACA+AGG | 0.653248 | 1.2:-72987856 | MS.gene54787:CDS |
TGCAGTGAAGTTGAGCACAA+TGG | 0.654882 | 1.2:-72989603 | MS.gene54787:intron |
CCCTAGTGTTTCTTCCATCG+CGG | 0.655752 | 1.2:+72992563 | None:intergenic |
CAAGTGCCTCTACAAAAGCA+GGG | 0.657382 | 1.2:-72992481 | MS.gene54787:CDS |
TGAGCTTAACTGGTTCTGTG+AGG | 0.664892 | 1.2:-72984592 | MS.gene54787:CDS |
ATATGCAACTGTTCACACAA+TGG | 0.665606 | 1.2:-72983812 | MS.gene54787:CDS |
ATTAAGGGTACTATAGCTCG+TGG | 0.669637 | 1.2:-72984233 | MS.gene54787:CDS |
GATTGTACTTCCATGAGATG+CGG | 0.673089 | 1.2:+72983835 | None:intergenic |
TCATATAGATACCATCTCTG+TGG | 0.674627 | 1.2:+72987097 | None:intergenic |
TGCGAAACCAGCCTTATGTG+AGG | 0.675505 | 1.2:+72984529 | None:intergenic |
GACCTATCTATTATTAACGG+TGG | 0.686149 | 1.2:-72992400 | MS.gene54787:intron |
TTATACATACAATATATACC+AGG | 0.694546 | 1.2:-72992422 | MS.gene54787:CDS |
TGGACAAACTAGAAATGCAG+GGG | 0.701563 | 1.2:-72988107 | MS.gene54787:CDS |
TTTAGTACATAATAATACTG+AGG | 0.714422 | 1.2:-72987252 | MS.gene54787:CDS |
CAACTGCAGGAACCTCTCAG+GGG | 0.714797 | 1.2:+72984286 | None:intergenic |
CAGGATCACATACACGACCA+AGG | 0.715599 | 1.2:+72983872 | None:intergenic |
TATGACCTCAAAGTTGAATG+TGG | 0.722703 | 1.2:-72984779 | MS.gene54787:CDS |
TGTAGGGCATCATACAACAA+GGG | 0.725500 | 1.2:-72987855 | MS.gene54787:CDS |
TCAAAATGATGATTGGACGT+GGG | 0.727524 | 1.2:-72991950 | MS.gene54787:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 72983465 | 72992704 | 72983465 | ID=MS.gene54787 |
chr1.2 | mRNA | 72983465 | 72992704 | 72983465 | ID=MS.gene54787.t1;Parent=MS.gene54787 |
chr1.2 | exon | 72992401 | 72992704 | 72992401 | ID=MS.gene54787.t1.exon1;Parent=MS.gene54787.t1 |
chr1.2 | CDS | 72992401 | 72992704 | 72992401 | ID=cds.MS.gene54787.t1;Parent=MS.gene54787.t1 |
chr1.2 | exon | 72991857 | 72991988 | 72991857 | ID=MS.gene54787.t1.exon2;Parent=MS.gene54787.t1 |
chr1.2 | CDS | 72991857 | 72991988 | 72991857 | ID=cds.MS.gene54787.t1;Parent=MS.gene54787.t1 |
chr1.2 | exon | 72990749 | 72990816 | 72990749 | ID=MS.gene54787.t1.exon3;Parent=MS.gene54787.t1 |
chr1.2 | CDS | 72990749 | 72990816 | 72990749 | ID=cds.MS.gene54787.t1;Parent=MS.gene54787.t1 |
chr1.2 | exon | 72989765 | 72989829 | 72989765 | ID=MS.gene54787.t1.exon4;Parent=MS.gene54787.t1 |
chr1.2 | CDS | 72989765 | 72989829 | 72989765 | ID=cds.MS.gene54787.t1;Parent=MS.gene54787.t1 |
chr1.2 | exon | 72989554 | 72989620 | 72989554 | ID=MS.gene54787.t1.exon5;Parent=MS.gene54787.t1 |
chr1.2 | CDS | 72989554 | 72989620 | 72989554 | ID=cds.MS.gene54787.t1;Parent=MS.gene54787.t1 |
chr1.2 | exon | 72988060 | 72988338 | 72988060 | ID=MS.gene54787.t1.exon6;Parent=MS.gene54787.t1 |
chr1.2 | CDS | 72988060 | 72988338 | 72988060 | ID=cds.MS.gene54787.t1;Parent=MS.gene54787.t1 |
chr1.2 | exon | 72987835 | 72987961 | 72987835 | ID=MS.gene54787.t1.exon7;Parent=MS.gene54787.t1 |
chr1.2 | CDS | 72987835 | 72987961 | 72987835 | ID=cds.MS.gene54787.t1;Parent=MS.gene54787.t1 |
chr1.2 | exon | 72987109 | 72987314 | 72987109 | ID=MS.gene54787.t1.exon8;Parent=MS.gene54787.t1 |
chr1.2 | CDS | 72987109 | 72987314 | 72987109 | ID=cds.MS.gene54787.t1;Parent=MS.gene54787.t1 |
chr1.2 | exon | 72986786 | 72986865 | 72986786 | ID=MS.gene54787.t1.exon9;Parent=MS.gene54787.t1 |
chr1.2 | CDS | 72986786 | 72986865 | 72986786 | ID=cds.MS.gene54787.t1;Parent=MS.gene54787.t1 |
chr1.2 | exon | 72986500 | 72986602 | 72986500 | ID=MS.gene54787.t1.exon10;Parent=MS.gene54787.t1 |
chr1.2 | CDS | 72986500 | 72986602 | 72986500 | ID=cds.MS.gene54787.t1;Parent=MS.gene54787.t1 |
chr1.2 | exon | 72985662 | 72985744 | 72985662 | ID=MS.gene54787.t1.exon11;Parent=MS.gene54787.t1 |
chr1.2 | CDS | 72985662 | 72985744 | 72985662 | ID=cds.MS.gene54787.t1;Parent=MS.gene54787.t1 |
chr1.2 | exon | 72984185 | 72984802 | 72984185 | ID=MS.gene54787.t1.exon12;Parent=MS.gene54787.t1 |
chr1.2 | CDS | 72984185 | 72984802 | 72984185 | ID=cds.MS.gene54787.t1;Parent=MS.gene54787.t1 |
chr1.2 | exon | 72983465 | 72983945 | 72983465 | ID=MS.gene54787.t1.exon13;Parent=MS.gene54787.t1 |
chr1.2 | CDS | 72983465 | 72983945 | 72983465 | ID=cds.MS.gene54787.t1;Parent=MS.gene54787.t1 |
Gene Sequence |
Protein sequence |