AlfalfaGEDB | MS.gene060942

M. sativa cultivar XinJiangDaYe / MS.gene060942

KEGG: K20896
GO: -
PFAM: PF03070.19

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060942.t1	XP_003609761.1	95.4	109	3	1	4	112	125	231	5.40E-52	213.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060942.t1	Q9SWB6	82.6	109	17	1	4	112	123	229	7.7e-47	187.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060942.t1	G7JMU3	95.4	109	3	1	4	112	125	231	3.9e-52	213.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049378	MS.gene060942	0.829615	4.66E-55	-1.69E-46
MS.gene049758	MS.gene060942	0.80124	9.89E-49	-1.69E-46
MS.gene050227	MS.gene060942	0.801176	1.02E-48	-1.69E-46
MS.gene050623	MS.gene060942	-0.814448	1.53E-51	-1.69E-46
MS.gene050763	MS.gene060942	0.800202	1.61E-48	-1.69E-46
MS.gene051983	MS.gene060942	0.811234	7.75E-51	-1.69E-46
MS.gene052077	MS.gene060942	0.824344	8.49E-54	-1.69E-46
MS.gene052426	MS.gene060942	0.800792	1.22E-48	-1.69E-46
MS.gene053494	MS.gene060942	0.825437	4.69E-54	-1.69E-46
MS.gene054379	MS.gene060942	0.808947	2.41E-50	-1.69E-46
MS.gene054930	MS.gene060942	0.806942	6.44E-50	-1.69E-46
MS.gene05510	MS.gene060942	0.80837	3.20E-50	-1.69E-46
MS.gene055701	MS.gene060942	0.838422	2.90E-57	-1.69E-46
MS.gene060572	MS.gene060942	0.80197	7.00E-49	-1.69E-46
MS.gene060940	MS.gene060942	0.936674	1.19E-97	-1.69E-46
MS.gene060942	MS.gene060943	0.880584	4.86E-70	-1.69E-46
MS.gene060942	MS.gene060998	0.836516	8.94E-57	-1.69E-46
MS.gene060942	MS.gene061002	0.943001	2.64E-102	-1.69E-46
MS.gene060942	MS.gene062852	0.813828	2.10E-51	-1.69E-46
MS.gene060942	MS.gene063876	0.801559	8.50E-49	-1.69E-46
MS.gene060942	MS.gene065926	0.801545	8.56E-49	-1.69E-46
MS.gene060942	MS.gene070553	0.805194	1.50E-49	-1.69E-46
MS.gene060942	MS.gene07115	0.80579	1.13E-49	-1.69E-46
MS.gene060942	MS.gene071343	0.808694	2.73E-50	-1.69E-46
MS.gene060942	MS.gene071407	0.806919	6.51E-50	-1.69E-46
MS.gene060942	MS.gene071438	-0.83949	1.54E-57	-1.69E-46
MS.gene060942	MS.gene074393	-0.814598	1.42E-51	-1.69E-46
MS.gene060942	MS.gene08779	0.813837	2.09E-51	-1.69E-46
MS.gene060942	MS.gene08782	0.831455	1.65E-55	-1.69E-46
MS.gene060942	MS.gene08906	0.810423	1.16E-50	-1.69E-46
MS.gene060942	MS.gene09668	0.807491	4.93E-50	-1.69E-46
MS.gene060942	MS.gene20184	0.820122	8.10E-53	-1.69E-46
MS.gene060942	MS.gene22820	-0.816494	5.37E-52	-1.69E-46
MS.gene060942	MS.gene23318	0.802153	6.42E-49	-1.69E-46
MS.gene060942	MS.gene25913	-0.814558	1.45E-51	-1.69E-46
MS.gene060942	MS.gene26514	0.837769	4.28E-57	-1.69E-46
MS.gene060942	MS.gene26728	0.802172	6.36E-49	-1.69E-46
MS.gene060942	MS.gene27008	0.81947	1.14E-52	-1.69E-46
MS.gene060942	MS.gene27271	0.838119	3.48E-57	-1.69E-46
MS.gene060942	MS.gene28525	0.803879	2.82E-49	-1.69E-46
MS.gene060942	MS.gene28862	0.810151	1.33E-50	-1.69E-46
MS.gene060942	MS.gene29000	0.85329	2.64E-61	-1.69E-46
MS.gene060942	MS.gene29405	0.839498	1.53E-57	-1.69E-46
MS.gene060942	MS.gene29773	0.805251	1.46E-49	-1.69E-46
MS.gene060942	MS.gene29986	0.809178	2.15E-50	-1.69E-46
MS.gene060942	MS.gene31059	0.815997	6.94E-52	-1.69E-46
MS.gene060942	MS.gene31116	0.834638	2.67E-56	-1.69E-46
MS.gene060942	MS.gene33198	0.807626	4.61E-50	-1.69E-46
MS.gene060942	MS.gene34028	0.81444	1.54E-51	-1.69E-46
MS.gene060942	MS.gene35408	0.801626	8.24E-49	-1.69E-46
MS.gene060942	MS.gene35799	0.800542	1.37E-48	-1.69E-46
MS.gene060942	MS.gene35930	0.806177	9.34E-50	-1.69E-46
MS.gene060942	MS.gene39638	0.83796	3.82E-57	-1.69E-46
MS.gene060942	MS.gene40946	0.803531	3.34E-49	-1.69E-46
MS.gene060942	MS.gene41037	0.814898	1.22E-51	-1.69E-46
MS.gene060942	MS.gene45171	0.800845	1.19E-48	-1.69E-46
MS.gene060942	MS.gene45533	0.828017	1.14E-54	-1.69E-46
MS.gene060942	MS.gene49486	0.817964	2.51E-52	-1.69E-46
MS.gene060942	MS.gene49940	0.818428	1.97E-52	-1.69E-46
MS.gene060942	MS.gene51067	0.806355	8.56E-50	-1.69E-46
MS.gene060942	MS.gene51182	0.801854	7.40E-49	-1.69E-46
MS.gene060942	MS.gene51549	-0.807681	4.49E-50	-1.69E-46
MS.gene060942	MS.gene52448	0.855863	4.74E-62	-1.69E-46
MS.gene060942	MS.gene54787	0.820591	6.32E-53	-1.69E-46
MS.gene060942	MS.gene56290	0.833065	6.61E-56	-1.69E-46
MS.gene060942	MS.gene56431	0.81693	4.29E-52	-1.69E-46
MS.gene060942	MS.gene56488	0.818373	2.03E-52	-1.69E-46
MS.gene060942	MS.gene59149	0.811097	8.30E-51	-1.69E-46
MS.gene060942	MS.gene60286	0.807389	5.18E-50	-1.69E-46
MS.gene060942	MS.gene61435	0.804309	2.30E-49	-1.69E-46
MS.gene060942	MS.gene62587	0.819567	1.09E-52	-1.69E-46
MS.gene060942	MS.gene62623	0.839373	1.65E-57	-1.69E-46
MS.gene060942	MS.gene63058	0.820426	6.90E-53	-1.69E-46
MS.gene060942	MS.gene66049	0.802969	4.36E-49	-1.69E-46
MS.gene060942	MS.gene68923	0.802061	6.71E-49	-1.69E-46
MS.gene060942	MS.gene68987	0.816314	5.89E-52	-1.69E-46
MS.gene060942	MS.gene69268	0.802288	6.02E-49	-1.69E-46
MS.gene060942	MS.gene69794	0.823948	1.05E-53	-1.69E-46
MS.gene060942	MS.gene70586	-0.802659	5.05E-49	-1.69E-46
MS.gene060942	MS.gene70819	0.80639	8.42E-50	-1.69E-46
MS.gene060942	MS.gene75614	0.836925	7.03E-57	-1.69E-46
MS.gene060942	MS.gene78166	0.807048	6.11E-50	-1.69E-46
MS.gene060942	MS.gene78205	0.809006	2.34E-50	-1.69E-46
MS.gene060942	MS.gene78247	0.800686	1.28E-48	-1.69E-46
MS.gene060942	MS.gene79683	0.823764	1.16E-53	-1.69E-46
MS.gene060942	MS.gene79842	0.811926	5.48E-51	-1.69E-46
MS.gene060942	MS.gene79884	0.80296	4.38E-49	-1.69E-46
MS.gene060942	MS.gene80298	0.808044	3.76E-50	-1.69E-46
MS.gene060942	MS.gene80919	0.814861	1.24E-51	-1.69E-46
MS.gene060942	MS.gene81388	0.818822	1.60E-52	-1.69E-46
MS.gene060942	MS.gene81653	0.808645	2.80E-50	-1.69E-46
MS.gene060942	MS.gene82358	0.808177	3.52E-50	-1.69E-46
MS.gene060942	MS.gene82978	0.804582	2.02E-49	-1.69E-46
MS.gene060942	MS.gene84086	0.808386	3.18E-50	-1.69E-46
MS.gene060942	MS.gene84326	0.818831	1.60E-52	-1.69E-46
MS.gene060942	MS.gene84396	0.800359	1.50E-48	-1.69E-46
MS.gene060942	MS.gene84401	0.819483	1.13E-52	-1.69E-46
MS.gene060942	MS.gene84404	0.821008	5.07E-53	-1.69E-46
MS.gene060942	MS.gene87170	0.811703	6.13E-51	-1.69E-46
MS.gene060942	MS.gene92548	0.813948	1.98E-51	-1.69E-46
MS.gene060942	MS.gene93135	0.80085	1.19E-48	-1.69E-46
MS.gene060942	MS.gene93888	0.817858	2.65E-52	-1.69E-46
MS.gene060942	MS.gene93890	0.814979	1.17E-51	-1.69E-46
MS.gene060942	MS.gene97270	0.816086	6.63E-52	-1.69E-46
MS.gene060942	MS.gene98543	0.826521	2.59E-54	-1.69E-46
MS.gene060942	MS.gene99802	0.804174	2.45E-49	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060942.t1	MTR_4g121940	95.413	109	3	1	4	112	125	231	3.05e-73	217

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060942.t1	AT3G16990	57.692	104	44	0	8	111	117	220	4.61e-39	130

Find 0 sgRNAs with CRISPR-Local

Find 23 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	TTGAACATGAAGTTCATTTC+TGG	-	32441:8751-8770	MS.gene060942:CDS	30.0%
	AAAAACACCACCAGAATTGA+AGG	-	32441:8596-8615	MS.gene060942:CDS	35.0%
	AAGTTTGATGAGTCAAGATG+TGG	-	32441:8491-8510	MS.gene060942:CDS	35.0%
	TTTGCACACTGTATTGAAGA+AGG	-	32441:8570-8589	MS.gene060942:CDS	35.0%
!	TGACTATCTTTTGCAGAGAT+TGG	+	32441:8665-8684	None:intergenic	35.0%
!	TTCTGATGATGAGCTAAAGA+AGG	-	32441:8704-8723	MS.gene060942:CDS	35.0%
	AAGGAGACTTGTGAAAGATG+GGG	-	32441:8615-8634	MS.gene060942:CDS	40.0%
	GAAGGAGACTTGTGAAAGAT+GGG	-	32441:8614-8633	MS.gene060942:CDS	40.0%
	TCACAAGTCTCCTTCAATTC+TGG	+	32441:8609-8628	None:intergenic	40.0%
	TGAAGGAGACTTGTGAAAGA+TGG	-	32441:8613-8632	MS.gene060942:CDS	40.0%
	TGAGCATGTATTGTTGTGAC+AGG	-	32441:8460-8479	MS.gene060942:CDS	40.0%
!	TCAAGATGTGGATTATACCG+TGG	-	32441:8503-8522	MS.gene060942:CDS	40.0%
!	TGCATTTTGGGCAATTGAAG+TGG	-	32441:8533-8552	MS.gene060942:CDS	40.0%
	AGTCAATCAACGCTTGCAGA+AGG	-	32441:8680-8699	MS.gene060942:CDS	45.0%
	CAAGTCTCCTTCAATTCTGG+TGG	+	32441:8606-8625	None:intergenic	45.0%
	CCAAAATGCAGTAAGAGCCA+CGG	+	32441:8523-8542	None:intergenic	45.0%
	GTATTGTTGTGACAGGTTGC+TGG	-	32441:8467-8486	MS.gene060942:CDS	45.0%
	GTGAAAGATGGGGCAATGAA+GGG	-	32441:8625-8644	MS.gene060942:CDS	45.0%
	TGTGAAAGATGGGGCAATGA+AGG	-	32441:8624-8643	MS.gene060942:CDS	45.0%
!	CGTGGCTCTTACTGCATTTT+GGG	-	32441:8521-8540	MS.gene060942:CDS	45.0%
!!	CATTTCTGGAATATGAGCCG+TGG	-	32441:8765-8784	MS.gene060942:CDS	45.0%
	AGATGGGGCAATGAAGGGTT+TGG	-	32441:8630-8649	MS.gene060942:CDS	50.0%
!	CCGTGGCTCTTACTGCATTT+TGG	-	32441:8520-8539	MS.gene060942:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
32441	gene	8459	8797	8459	ID=MS.gene060942
32441	mRNA	8459	8797	8459	ID=MS.gene060942.t1;Parent=MS.gene060942
32441	exon	8459	8797	8459	ID=MS.gene060942.t1.exon1;Parent=MS.gene060942.t1
32441	CDS	8459	8797	8459	ID=cds.MS.gene060942.t1;Parent=MS.gene060942.t1

Gene Sequence	>MS.gene060942 ATGAGCATGTATTGTTGTGACAGGTTGCTGGAAAGTTTGATGAGTCAAGATGTGGATTATACCGTGGCTCTTACTGCATTTTGGGCAATTGAAGTGGTGTATCAAGAGAGTTTTGCACACTGTATTGAAGAAGGCTCAAAAACACCACCAGAATTGAAGGAGACTTGTGAAAGATGGGGCAATGAAGGGTTTGGTCAGTACTGCCAATCTCTGCAAAAGATAGTCAATCAACGCTTGCAGAAGGCTTCTGATGATGAGCTAAAGAAGGCTGAAGTCATGTTGCTGAGTATTATTGAACATGAAGTTCATTTCTGGAATATGAGCCGTGGAAATGTTTGA
Protein sequence	>MS.gene060942.t1 MSMYCCDRLLESLMSQDVDYTVALTAFWAIEVVYQESFAHCIEEGSKTPPELKETCERWGNEGFGQYCQSLQKIVNQRLQKASDDELKKAEVMLLSIIEHEVHFWNMSRGNV