AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54859

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54859.t1 MTR_2g091175 96.739 368 9 1 1 365 1 368 0.0 746
MS.gene54859.t1 MTR_4g079700 74.722 360 86 1 4 363 9 363 0.0 581
MS.gene54859.t1 MTR_2g015720 60.274 365 136 5 1 363 1 358 6.53e-161 455
MS.gene54859.t1 MTR_4g087730 55.890 365 158 2 1 364 1 363 2.47e-152 434
MS.gene54859.t1 MTR_4g088030 55.464 366 146 3 1 364 1 351 3.52e-149 425
MS.gene54859.t1 MTR_3g049330 54.829 321 142 2 47 364 31 351 2.13e-133 385
MS.gene54859.t1 MTR_2g073510 55.799 319 137 3 46 360 32 350 2.38e-131 380
MS.gene54859.t1 MTR_3g021060 52.905 327 153 1 38 363 37 363 1.78e-130 378
MS.gene54859.t1 MTR_3g035830 50.746 335 164 1 30 363 14 348 8.86e-128 370
MS.gene54859.t1 MTR_3g021090 50.755 331 162 1 30 359 14 344 2.30e-124 364
MS.gene54859.t1 MTR_5g034810 51.497 334 156 4 35 364 22 353 2.62e-122 357
MS.gene54859.t1 MTR_3g464570 48.358 335 156 4 47 364 43 377 1.64e-115 340
MS.gene54859.t1 MTR_5g071350 46.647 343 158 4 47 364 58 400 9.31e-115 339
MS.gene54859.t1 MTR_2g073500 45.289 329 158 8 47 364 29 346 3.43e-101 303
MS.gene54859.t1 MTR_1g050448 42.609 345 174 8 34 363 40 375 4.60e-96 291
MS.gene54859.t1 MTR_1g111010 45.897 329 157 10 44 365 29 343 6.35e-93 282
MS.gene54859.t1 MTR_1g112210 38.329 347 193 6 31 363 43 382 6.93e-92 280
MS.gene54859.t1 MTR_1g112210 39.429 350 172 9 31 363 43 369 2.63e-91 278
MS.gene54859.t1 MTR_0136s0010 38.400 375 204 6 15 364 138 510 1.47e-89 279
MS.gene54859.t1 MTR_7g093450 38.859 368 194 7 27 364 222 588 2.59e-89 280
MS.gene54859.t1 MTR_5g033800 35.890 365 210 6 23 364 121 484 3.69e-84 264
MS.gene54859.t1 MTR_3g464570 47.407 270 125 4 112 364 4 273 4.53e-84 256
MS.gene54859.t1 MTR_4g126950 37.318 343 186 6 46 363 108 446 5.74e-84 262
MS.gene54859.t1 MTR_4g121560 38.710 372 202 10 18 364 84 454 4.97e-82 258
MS.gene54859.t1 MTR_3g070900 39.017 346 184 9 47 365 106 451 1.55e-81 256
MS.gene54859.t1 MTR_7g109550 39.759 332 176 8 47 359 137 463 4.05e-80 253
MS.gene54859.t1 MTR_8g069790 37.391 345 186 6 46 364 177 517 1.28e-79 253
MS.gene54859.t1 MTR_5g082880 38.109 349 186 10 47 365 165 513 1.21e-78 250
MS.gene54859.t1 MTR_5g059400 36.544 353 194 8 39 364 167 516 6.29e-78 249
MS.gene54859.t1 MTR_1g116130 36.544 353 194 8 39 364 167 516 6.29e-78 249
MS.gene54859.t1 MTR_3g071650 34.085 399 227 10 2 364 33 431 9.02e-77 243
MS.gene54859.t1 MTR_5g083260 37.318 343 190 7 47 364 83 425 5.09e-75 238
MS.gene54859.t1 MTR_4g016940 33.750 400 220 11 9 363 28 427 5.57e-74 236
MS.gene54859.t1 MTR_1g058380 37.026 343 189 8 47 364 55 395 7.72e-73 232
MS.gene54859.t1 MTR_8g463790 35.613 351 196 9 40 364 64 410 1.28e-70 227
MS.gene54859.t1 MTR_2g022560 37.059 340 188 7 47 361 97 435 1.07e-68 223
MS.gene54859.t1 MTR_7g094750 36.812 345 189 8 47 364 91 433 4.87e-68 221
MS.gene54859.t1 MTR_4g014430 35.345 348 199 9 36 359 97 442 5.91e-68 221
MS.gene54859.t1 MTR_7g070060 31.714 391 231 10 4 365 28 411 1.25e-66 216
MS.gene54859.t1 MTR_4g014440 32.665 349 206 8 45 364 60 408 1.74e-66 216
MS.gene54859.t1 MTR_7g068920 35.838 346 195 9 44 363 77 421 5.04e-66 215
MS.gene54859.t1 MTR_3g090120 36.202 337 191 7 47 364 129 460 6.44e-62 205
MS.gene54859.t1 MTR_5g033800 35.521 259 155 4 23 269 121 379 2.13e-55 186
MS.gene54859.t1 MTR_8g093530 29.825 342 220 6 38 364 81 417 1.21e-52 180
MS.gene54859.t1 MTR_5g069320 33.224 304 143 9 74 356 122 386 1.77e-45 160
MS.gene54859.t1 MTR_7g094750 35.294 238 140 3 47 270 91 328 5.43e-45 157
MS.gene54859.t1 MTR_7g070060 30.182 275 175 5 4 268 28 295 6.10e-45 157
MS.gene54859.t1 MTR_7g070060 30.195 308 186 9 87 365 2 309 8.60e-42 148
MS.gene54859.t1 MTR_6g016880 28.753 393 232 11 4 363 42 419 2.31e-39 145
MS.gene54859.t1 MTR_5g035080 30.435 391 219 16 9 359 39 416 6.34e-39 144
MS.gene54859.t1 MTR_5g035090 30.618 356 201 16 40 358 76 422 6.58e-38 141
MS.gene54859.t1 MTR_1g076690 28.792 389 230 13 12 359 184 566 1.50e-37 142
MS.gene54859.t1 MTR_6g061710 27.838 370 226 10 26 359 146 510 2.09e-35 135
MS.gene54859.t1 MTR_7g019120 28.161 348 207 9 46 359 78 416 1.76e-34 132
MS.gene54859.t1 MTR_6g016240 30.725 345 204 12 47 359 71 412 2.72e-34 131
MS.gene54859.t1 MTR_8g093870 31.389 360 206 17 35 363 123 472 4.26e-34 131
MS.gene54859.t1 MTR_5g035150 30.725 345 203 11 47 358 85 426 6.74e-34 130
MS.gene54859.t1 MTR_6g016875 29.132 357 209 12 39 359 56 404 1.91e-33 129
MS.gene54859.t1 MTR_8g027900 26.902 368 221 10 34 363 198 555 6.98e-32 126
MS.gene54859.t1 MTR_2g016060 28.940 349 203 13 48 359 56 396 7.22e-32 124
MS.gene54859.t1 MTR_5g035070 29.480 346 208 12 47 359 87 429 1.55e-31 124
MS.gene54859.t1 MTR_7g033230 28.255 361 206 15 40 359 257 605 3.12e-30 122
MS.gene54859.t1 MTR_7g033230 28.255 361 206 15 40 359 327 675 3.49e-30 122
MS.gene54859.t1 MTR_4g092830 27.666 347 211 13 47 359 48 388 9.41e-30 119
MS.gene54859.t1 MTR_8g104970 27.397 365 218 13 33 359 106 461 3.15e-29 118
MS.gene54859.t1 MTR_3g021150 44.737 114 62 1 231 343 1 114 4.78e-29 109
MS.gene54859.t1 MTR_4g125060 29.395 347 208 15 47 363 132 471 5.21e-29 117
MS.gene54859.t1 MTR_4g125060 29.395 347 208 15 47 363 171 510 6.60e-29 117
MS.gene54859.t1 MTR_4g125060 29.395 347 208 15 47 363 200 539 8.29e-29 117
MS.gene54859.t1 MTR_8g099300 27.066 351 215 13 44 359 71 415 1.29e-27 112
MS.gene54859.t1 MTR_6g007777 28.866 388 212 18 19 363 91 457 1.57e-27 113
MS.gene54859.t1 MTR_3g109840 26.835 395 241 14 3 359 27 411 1.81e-27 112
MS.gene54859.t1 MTR_7g019140 44.444 90 50 0 46 135 78 167 5.30e-22 92.0
MS.gene54859.t1 MTR_5g035120 39.604 101 61 0 37 137 65 165 4.27e-19 84.0
MS.gene54859.t1 MTR_2g022580 32.773 119 66 3 107 211 2 120 2.61e-12 63.9
MS.gene54859.t1 MTR_3g021080 31.683 101 49 2 265 364 99 180 5.24e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54859.t1 AT2G42570 65.698 344 111 3 28 364 22 365 2.81e-179 502
MS.gene54859.t1 AT2G31110 58.774 359 132 3 11 363 14 362 5.88e-167 471
MS.gene54859.t1 AT1G29050 59.882 339 134 2 27 363 40 378 1.47e-157 447
MS.gene54859.t1 AT2G34070 56.818 352 144 3 20 363 32 383 9.07e-151 430
MS.gene54859.t1 AT3G14850 55.452 321 139 2 44 360 31 351 3.19e-131 380
MS.gene54859.t1 AT1G78710 49.254 335 164 4 34 364 25 357 8.10e-122 356
MS.gene54859.t1 AT2G30900 46.049 367 182 6 4 364 10 366 3.90e-120 352
MS.gene54859.t1 AT2G34070 60.643 249 96 2 117 363 1 249 1.82e-111 325
MS.gene54859.t1 AT5G58600 47.619 336 158 5 47 364 66 401 1.19e-110 329
MS.gene54859.t1 AT2G31110 56.250 256 97 2 11 261 14 259 6.06e-109 320
MS.gene54859.t1 AT2G30010 45.322 342 163 5 47 364 99 440 2.85e-105 317
MS.gene54859.t1 AT2G30010 45.322 342 163 5 47 364 56 397 3.08e-105 315
MS.gene54859.t1 AT2G31110 63.768 207 74 1 158 363 8 214 4.34e-104 305
MS.gene54859.t1 AT3G14850 55.242 248 107 2 117 360 1 248 2.04e-95 285
MS.gene54859.t1 AT3G54260 42.515 334 167 6 47 364 51 375 9.37e-92 280
MS.gene54859.t1 AT5G06700 42.274 343 171 7 47 364 255 595 3.47e-91 285
MS.gene54859.t1 AT3G12060 41.520 342 175 6 47 364 196 536 4.12e-89 279
MS.gene54859.t1 AT1G78710 39.665 358 151 6 11 364 1 297 2.33e-88 268
MS.gene54859.t1 AT2G30900 45.161 279 135 5 4 280 10 272 2.86e-85 259
MS.gene54859.t1 AT3G62390 38.462 364 197 8 26 364 111 472 4.70e-82 258
MS.gene54859.t1 AT5G58600 51.786 224 106 2 47 268 66 289 5.44e-82 252
MS.gene54859.t1 AT5G20590 38.663 344 181 8 47 364 141 480 1.26e-81 257
MS.gene54859.t1 AT5G49340 37.960 353 190 8 39 364 92 442 1.19e-80 254
MS.gene54859.t1 AT1G60790 38.211 369 194 10 26 364 169 533 4.41e-80 255
MS.gene54859.t1 AT3G55990 37.464 347 190 9 46 365 139 485 4.23e-77 246
MS.gene54859.t1 AT2G40150 35.977 353 193 8 46 365 70 422 9.21e-76 240
MS.gene54859.t1 AT3G11030 37.931 348 182 9 47 364 106 449 8.90e-75 238
MS.gene54859.t1 AT2G40160 35.817 349 192 9 47 364 77 424 3.23e-74 237
MS.gene54859.t1 AT2G40160 35.569 343 191 8 47 359 77 419 4.86e-74 236
MS.gene54859.t1 AT5G19160 34.375 416 208 12 1 361 37 442 7.91e-73 234
MS.gene54859.t1 AT1G73140 36.158 354 196 8 37 364 57 406 1.41e-72 232
MS.gene54859.t1 AT5G01360 35.756 344 195 7 46 363 35 378 5.32e-72 229
MS.gene54859.t1 AT5G01360 35.756 344 195 7 46 363 91 434 2.83e-71 229
MS.gene54859.t1 AT5G01620 34.402 343 198 8 42 359 105 445 1.09e-70 228
MS.gene54859.t1 AT5G01620 34.402 343 198 8 42 359 105 445 1.09e-70 228
MS.gene54859.t1 AT5G01620 34.402 343 198 8 42 359 113 453 1.23e-70 228
MS.gene54859.t1 AT2G40320 35.632 348 199 8 42 364 76 423 1.21e-69 224
MS.gene54859.t1 AT3G06080 36.550 342 189 7 47 361 103 443 1.72e-69 225
MS.gene54859.t1 AT5G06230 35.294 357 202 7 36 364 10 365 2.18e-67 217
MS.gene54859.t1 AT5G06230 35.294 357 202 7 36 364 51 406 3.75e-67 218
MS.gene54859.t1 AT3G11570 37.538 325 180 7 63 365 98 421 5.94e-67 218
MS.gene54859.t1 AT2G38320 33.333 351 204 9 44 364 55 405 3.13e-64 210
MS.gene54859.t1 AT1G48880 33.699 365 195 8 21 364 102 440 4.12e-61 203
MS.gene54859.t1 AT3G62390 39.419 241 134 4 41 269 132 372 7.49e-57 191
MS.gene54859.t1 AT5G20590 39.583 240 125 6 47 269 141 377 1.88e-55 186
MS.gene54859.t1 AT5G19160 34.098 305 159 6 1 269 37 335 1.80e-53 180
MS.gene54859.t1 AT2G38320 31.056 322 194 7 71 364 1 322 3.52e-53 179
MS.gene54859.t1 AT2G40160 33.219 292 170 8 2 268 19 310 3.15e-50 171
MS.gene54859.t1 AT3G06080 37.131 237 135 3 47 269 103 339 4.15e-49 169
MS.gene54859.t1 AT5G06230 35.433 254 144 4 36 269 51 304 1.75e-45 158
MS.gene54859.t1 AT1G70230 29.513 349 198 11 47 363 79 411 6.98e-40 146
MS.gene54859.t1 AT5G51640 28.158 380 225 11 21 359 112 484 1.49e-39 147
MS.gene54859.t1 AT2G14530 28.792 389 241 12 7 363 22 406 1.80e-39 145
MS.gene54859.t1 AT4G25360 28.571 385 217 12 19 359 150 520 1.04e-37 142
MS.gene54859.t1 AT4G25360 28.571 385 217 12 19 359 150 520 1.04e-37 142
MS.gene54859.t1 AT5G64020 29.494 356 208 12 47 363 57 408 7.59e-35 132
MS.gene54859.t1 AT5G64470 26.744 344 223 10 47 364 55 395 1.95e-34 131
MS.gene54859.t1 AT1G01430 28.609 381 223 12 28 365 75 449 2.33e-33 129
MS.gene54859.t1 AT5G64470 26.857 350 221 11 47 364 55 401 3.52e-33 128
MS.gene54859.t1 AT5G15890 28.065 367 219 12 25 359 165 518 1.30e-32 128
MS.gene54859.t1 AT5G15900 26.934 349 217 11 47 363 67 409 4.43e-32 125
MS.gene54859.t1 AT2G37720 30.939 362 183 14 47 363 143 482 5.10e-32 125
MS.gene54859.t1 AT5G15900 26.934 349 217 11 47 363 86 428 6.44e-32 125
MS.gene54859.t1 AT5G20680 29.111 371 222 14 26 363 95 457 9.40e-32 124
MS.gene54859.t1 AT5G20680 29.111 371 222 14 26 363 171 533 2.23e-31 124
MS.gene54859.t1 AT5G20680 29.111 371 222 14 26 363 189 551 2.73e-31 124
MS.gene54859.t1 AT5G20680 29.111 371 222 14 26 363 189 551 2.73e-31 124
MS.gene54859.t1 AT5G20680 29.111 371 222 14 26 363 189 551 2.73e-31 124
MS.gene54859.t1 AT5G20680 29.111 371 222 14 26 363 189 551 2.73e-31 124
MS.gene54859.t1 AT3G28150 30.966 352 199 16 46 363 69 410 3.29e-31 122
MS.gene54859.t1 AT3G02440 26.513 347 212 12 47 359 127 464 6.44e-31 122
MS.gene54859.t1 AT3G02440 26.513 347 212 12 47 359 135 472 6.52e-31 122
MS.gene54859.t1 AT4G11090 26.478 389 227 16 25 365 51 428 2.63e-28 115
MS.gene54859.t1 AT4G01080 27.226 393 235 13 6 359 46 426 3.18e-28 114
MS.gene54859.t1 AT4G23790 25.683 366 213 14 46 365 78 430 6.32e-23 99.8
MS.gene54859.t1 AT5G64470 26.378 254 166 8 47 282 55 305 6.06e-21 92.4
MS.gene54859.t1 AT5G64470 26.378 254 166 8 47 282 55 305 8.32e-21 92.4

Find 74 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCATGCAGCTCTCTT+TGG 0.210145 2.1:+9769469 MS.gene54859:CDS
TCTATTCCGCACACCATATT+TGG 0.219542 2.1:+9768360 MS.gene54859:CDS
TATCTCCACAATAACATTTC+AGG 0.240854 2.1:+9766009 MS.gene54859:CDS
AGAGAAACACAACCATTCTT+TGG 0.302957 2.1:+9769244 MS.gene54859:CDS
CGGTCAAGGTCTACCAAATA+TGG 0.307611 2.1:-9768373 None:intergenic
GTTTGACAACTTGGGCTAGA+TGG 0.309964 2.1:+9768675 MS.gene54859:CDS
TAGCATGTATGATTCATTCT+TGG 0.316438 2.1:+9765948 MS.gene54859:CDS
TGTAGTCATTGGTGTCTTCC+AGG 0.323483 2.1:+9769424 MS.gene54859:CDS
GTGTGCGGAATAGAAATAAT+TGG 0.347634 2.1:-9768351 None:intergenic
CAAGCCATTGGTGTTCCTGC+TGG 0.351195 2.1:-9769277 None:intergenic
AGAAGAACATTCCAAGTATC+AGG 0.357411 2.1:-9769451 None:intergenic
TCTACAAAGGTTTGACAACT+TGG 0.371927 2.1:+9768666 MS.gene54859:CDS
TTCCAGGACTTCCTGATACT+TGG 0.372897 2.1:+9769440 MS.gene54859:CDS
CAATTCAATTGTCAAAAGTA+TGG 0.391925 2.1:+9765527 MS.gene54859:CDS
TATTTCTGATACTGAGTATC+AGG 0.397938 2.1:-9765554 None:intergenic
ACCTTGACCGTGAGAACATT+GGG 0.399023 2.1:+9768386 MS.gene54859:CDS
AATTCGCTGGAAGATGTAAC+TGG 0.401689 2.1:+9765432 MS.gene54859:CDS
AGCATGTATGATTCATTCTT+GGG 0.407416 2.1:+9765949 MS.gene54859:CDS
AAGAAGACCTTGGTTTGAGC+TGG 0.426020 2.1:-9768716 None:intergenic
GTAACTGGTTTCGTGGCAAA+TGG 0.428187 2.1:+9765447 MS.gene54859:CDS
CTCAGTATCAGAAATATAGA+TGG 0.444563 2.1:+9765561 MS.gene54859:CDS
TGCCAACAGATTGTAGTCAT+TGG 0.444942 2.1:+9769413 MS.gene54859:CDS
AGCAGGAACACCAATGGCTT+GGG 0.468530 2.1:+9769279 MS.gene54859:CDS
TACATGCTAGTGAATTGAAC+TGG 0.471439 2.1:-9765934 None:intergenic
TTCACTATTACCCAAGCCAT+TGG 0.475251 2.1:-9769289 None:intergenic
TTTGACAACTTGGGCTAGAT+GGG 0.479154 2.1:+9768676 MS.gene54859:CDS
ATAACACTACTATACCCTTC+TGG 0.481855 2.1:-9769391 None:intergenic
CATTGGGCGTGTTCTAAAGT+TGG 0.484902 2.1:+9768402 MS.gene54859:CDS
ATTGAATTGTGGATCTATGA+AGG 0.486450 2.1:-9765513 None:intergenic
TTCCAAGTATCAGGAAGTCC+TGG 0.489986 2.1:-9769442 None:intergenic
AAGCCATTGGTGTTCCTGCT+GGG 0.502968 2.1:-9769276 None:intergenic
CAGCAGGAACACCAATGGCT+TGG 0.504711 2.1:+9769278 MS.gene54859:CDS
CGGTTGTGCATTTCCAGTGT+GGG 0.509875 2.1:-9768494 None:intergenic
ATGGAGAGGAATGGATGTAT+TGG 0.512382 2.1:+9768447 MS.gene54859:CDS
CTTTGTAGAACGCAATGAAA+CGG 0.518428 2.1:-9768652 None:intergenic
TAACTGGTTTCGTGGCAAAT+GGG 0.526407 2.1:+9765448 MS.gene54859:CDS
CTCATTACTAGTACTGGAAA+CGG 0.528540 2.1:-9765405 None:intergenic
CGTTTCATTGCGTTCTACAA+AGG 0.529142 2.1:+9768653 MS.gene54859:CDS
GATAGCACTTTGCTTTGAGA+AGG 0.530854 2.1:-9765990 None:intergenic
CTACAAAGGTTTGACAACTT+GGG 0.543154 2.1:+9768667 MS.gene54859:CDS
TGGCATTGGTGGACCCACAC+TGG 0.546946 2.1:+9768481 MS.gene54859:CDS
GACCTTGACCGTGAGAACAT+TGG 0.550954 2.1:+9768385 MS.gene54859:CDS
TCTATGAAGGGACAAGAAGA+AGG 0.551169 2.1:-9765500 None:intergenic
GGTAGTTGTTGCTGTTGTGT+TGG 0.556553 2.1:-9765384 None:intergenic
GGAAGATGTAACTGGTTTCG+TGG 0.558355 2.1:+9765440 MS.gene54859:CDS
GAAAAGATGCACATCCAGAA+GGG 0.559145 2.1:+9769377 MS.gene54859:CDS
TTTGGTTTGAAGTACCCAGC+AGG 0.566621 2.1:+9769262 MS.gene54859:CDS
GGATCATAGAGAGGATACGA+AGG 0.570131 2.1:-9765479 None:intergenic
GGGTACTTCAAACCAAAGAA+TGG 0.571214 2.1:-9769256 None:intergenic
CTTTCACTTGTTCTATACCA+AGG 0.575010 2.1:+9765588 MS.gene54859:CDS
ACTAACCTGAAATGTTATTG+TGG 0.576103 2.1:-9766014 None:intergenic
CAATAAAGAGTGGTAATGCA+TGG 0.581612 2.1:+9768428 MS.gene54859:CDS
ACGGTTGTGCATTTCCAGTG+TGG 0.583332 2.1:-9768495 None:intergenic
AGTAATGAGAGAAAATTCGC+TGG 0.583342 2.1:+9765419 MS.gene54859:CDS
AGAAAAGATGCACATCCAGA+AGG 0.583703 2.1:+9769376 MS.gene54859:CDS
TGGTAATGCATGGAGAGGAA+TGG 0.587257 2.1:+9768438 MS.gene54859:CDS
CACCAATGACTACAATCTGT+TGG 0.588126 2.1:-9769415 None:intergenic
GCCCAATGTTCTCACGGTCA+AGG 0.590015 2.1:-9768387 None:intergenic
AAGAGTGGTAATGCATGGAG+AGG 0.592479 2.1:+9768433 MS.gene54859:CDS
CAGATGGGATTATATTCAAG+AGG 0.594517 2.1:+9768604 MS.gene54859:intron
ACAACTTACTCGTAATGCAC+AGG 0.597709 2.1:-9768752 None:intergenic
TTGAATTGTGGATCTATGAA+GGG 0.607685 2.1:-9765512 None:intergenic
TGTAAATCCAGCTCAAACCA+AGG 0.609530 2.1:+9768709 MS.gene54859:CDS
CTTGGTATAGAACAAGTGAA+AGG 0.623660 2.1:-9765587 None:intergenic
GAACACGCCCAATGTTCTCA+CGG 0.633134 2.1:-9768393 None:intergenic
TTATATTCAAGAGGGTGGCA+AGG 0.635985 2.1:+9768613 MS.gene54859:CDS
TGGGATTATATTCAAGAGGG+TGG 0.638991 2.1:+9768608 MS.gene54859:CDS
CAAGAAGAAGGATCATAGAG+AGG 0.640153 2.1:-9765488 None:intergenic
GTACCCAGCAGGAACACCAA+TGG 0.661011 2.1:+9769273 MS.gene54859:CDS
AGATGGGATTATATTCAAGA+GGG 0.662305 2.1:+9768605 MS.gene54859:intron
GGTCTACCAAATATGGTGTG+CGG 0.672109 2.1:-9768366 None:intergenic
GATCATAGAGAGGATACGAA+GGG 0.672935 2.1:-9765478 None:intergenic
GTCACATCTAGAAAATACAC+TGG 0.675733 2.1:-9769337 None:intergenic
AAGTTGGACTCAATAAAGAG+TGG 0.679146 2.1:+9768418 MS.gene54859:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTATATATTTATTCATTAT+AGG + chr2.1:9767709-9767728 MS.gene54859:intron 10.0%
!! TTATAATTAATAAGAATGTT+TGG - chr2.1:9767029-9767048 None:intergenic 10.0%
!! TTTAAAAAATACATTTATTG+GGG + chr2.1:9766553-9766572 MS.gene54859:intron 10.0%
!! TTTATCAACTATATTTATAA+TGG + chr2.1:9769162-9769181 MS.gene54859:intron 10.0%
!! AATATAAATTACTAGAAGAA+AGG - chr2.1:9767987-9768006 None:intergenic 15.0%
!! ACAAAAAATAAAATTTGAAG+TGG + chr2.1:9767648-9767667 MS.gene54859:intron 15.0%
!! AGAATAATACAATATTAGTA+TGG + chr2.1:9767107-9767126 MS.gene54859:intron 15.0%
!! GTAAATAAATTATATGTTAG+TGG + chr2.1:9767081-9767100 MS.gene54859:intron 15.0%
!! TTAAAAAATACATTTATTGG+GGG + chr2.1:9766554-9766573 MS.gene54859:intron 15.0%
!!! AACTTTTATAAATCATTTGA+CGG - chr2.1:9768194-9768213 None:intergenic 15.0%
!!! ATTGTTTTTTTACAGAATTA+CGG + chr2.1:9768823-9768842 MS.gene54859:intron 15.0%
!!! ATTTTTATTATTTTCCATGT+TGG + chr2.1:9766296-9766315 MS.gene54859:intron 15.0%
!!! CAAAAAATAAAATTTGAAGT+GGG + chr2.1:9767649-9767668 MS.gene54859:intron 15.0%
!!! GATCATGAATATAATTTTAT+TGG - chr2.1:9767289-9767308 None:intergenic 15.0%
!!! GTATTATTTGAATTATTTTC+AGG + chr2.1:9768318-9768337 MS.gene54859:intron 15.0%
!!! TTCAATACAAATTTCATTTT+TGG - chr2.1:9766960-9766979 None:intergenic 15.0%
!!! TTTGATACTTTTGAATTTAA+TGG + chr2.1:9766077-9766096 MS.gene54859:intron 15.0%
!! AAAGAAATCATTAGAATGTT+TGG + chr2.1:9768948-9768967 MS.gene54859:intron 20.0%
!! AATCAATTCTGTTATTAATG+AGG + chr2.1:9768545-9768564 MS.gene54859:intron 20.0%
!! ATAAAACTTAGTCTAGTAAT+TGG - chr2.1:9769147-9769166 None:intergenic 20.0%
!! ATGTACAATCATTATATGTA+AGG + chr2.1:9768141-9768160 MS.gene54859:intron 20.0%
!! ATTACTATCTATTATTACCA+TGG - chr2.1:9766479-9766498 None:intergenic 20.0%
!! ATTTGAAGAAAAACAAAACA+TGG - chr2.1:9766222-9766241 None:intergenic 20.0%
!! GCTATTCACATTAAAAAAAT+AGG + chr2.1:9767594-9767613 MS.gene54859:intron 20.0%
!! GTACTACAATTTAATTCATA+TGG - chr2.1:9767675-9767694 None:intergenic 20.0%
!! GTATGATATTTGGTAAATTA+GGG + chr2.1:9769186-9769205 MS.gene54859:intron 20.0%
!! TAAAAAAAGATACAAACTAG+TGG + chr2.1:9767130-9767149 MS.gene54859:intron 20.0%
!! TAAAAAATACATTTATTGGG+GGG + chr2.1:9766555-9766574 MS.gene54859:intron 20.0%
!! TATGATATTTGGTAAATTAG+GGG + chr2.1:9769187-9769206 MS.gene54859:intron 20.0%
!! TCCTAAAGTTTCTATATAAA+GGG - chr2.1:9767331-9767350 None:intergenic 20.0%
!! TGATCATTACAGTTTAAAAA+GGG - chr2.1:9767484-9767503 None:intergenic 20.0%
!! TGTATGATATTTGGTAAATT+AGG + chr2.1:9769185-9769204 MS.gene54859:intron 20.0%
!! TTAGAAAATGAAAATGTGTT+TGG + chr2.1:9765825-9765844 MS.gene54859:intron 20.0%
!! TTATAATGGTGTATGATATT+TGG + chr2.1:9769176-9769195 MS.gene54859:intron 20.0%
!! TTATGAAAAAACTATTACCA+TGG - chr2.1:9766450-9766469 None:intergenic 20.0%
!! TTCCTAAAGTTTCTATATAA+AGG - chr2.1:9767332-9767351 None:intergenic 20.0%
!! TTCTAGTAATTTATATTCCA+TGG + chr2.1:9767990-9768009 MS.gene54859:intron 20.0%
!! TTGATCATTACAGTTTAAAA+AGG - chr2.1:9767485-9767504 None:intergenic 20.0%
!! TTTAAATTTCAGTAGAATCA+GGG + chr2.1:9768860-9768879 MS.gene54859:intron 20.0%
!! TTTGAAGAAAAACAAAACAT+GGG - chr2.1:9766221-9766240 None:intergenic 20.0%
!!! AAATTATGTTGGTTATGTTT+TGG + chr2.1:9766105-9766124 MS.gene54859:intron 20.0%
!!! AATGTGTTTGGTATTTTTTT+AGG + chr2.1:9765837-9765856 MS.gene54859:intron 20.0%
!!! ATTAGCAATAATTAGTGTTT+TGG + chr2.1:9767363-9767382 MS.gene54859:intron 20.0%
!!! TTGAATTATTTTCAGGATTA+TGG + chr2.1:9768325-9768344 MS.gene54859:intron 20.0%
!!! TTTTAAATTTCAGTAGAATC+AGG + chr2.1:9768859-9768878 MS.gene54859:intron 20.0%
!!! TTTTTTCATAAAAAATGCCA+TGG + chr2.1:9766459-9766478 MS.gene54859:intron 20.0%
! AAAAGATAATCCCTTCAAAA+TGG + chr2.1:9767832-9767851 MS.gene54859:intron 25.0%
! AACAGAATTGATTATGATCA+TGG - chr2.1:9768538-9768557 None:intergenic 25.0%
! ACTCAATAAAGTTTCCAATT+AGG - chr2.1:9766182-9766201 None:intergenic 25.0%
! AGTTTCTATATAAAGGGAAA+AGG - chr2.1:9767325-9767344 None:intergenic 25.0%
! ATAGAACACCAAATATAAGA+CGG - chr2.1:9766915-9766934 None:intergenic 25.0%
! ATGATATTTGGTAAATTAGG+GGG + chr2.1:9769188-9769207 MS.gene54859:intron 25.0%
! CAATTCAATTGTCAAAAGTA+TGG + chr2.1:9765527-9765546 MS.gene54859:CDS 25.0%
! GATCATTACAGTTTAAAAAG+GGG - chr2.1:9767483-9767502 None:intergenic 25.0%
! GGAAAAAAGATTATGTTTGT+TGG + chr2.1:9765893-9765912 MS.gene54859:CDS 25.0%
! GTAAATGATAGTAATAACCA+TGG - chr2.1:9766422-9766441 None:intergenic 25.0%
! TAAGTAGCTAGTATAATGTT+TGG - chr2.1:9765749-9765768 None:intergenic 25.0%
! TAATAAATGTGAATCTTCCA+TGG + chr2.1:9766402-9766421 MS.gene54859:intron 25.0%
! TCCCTTTATATAGAAACTTT+AGG + chr2.1:9767327-9767346 MS.gene54859:intron 25.0%
! TTACTACTAATGATGATTGT+TGG - chr2.1:9767410-9767429 None:intergenic 25.0%
! TTGATTGATGCTTATATCAA+GGG - chr2.1:9767574-9767593 None:intergenic 25.0%
!! AACATATTTTCCTCTTACAA+AGG + chr2.1:9766513-9766532 MS.gene54859:intron 25.0%
!! CTCTAAATTTTACAAATTCG+TGG - chr2.1:9769009-9769028 None:intergenic 25.0%
!! GTTTTTAAATCCTTTGTAAG+AGG - chr2.1:9766526-9766545 None:intergenic 25.0%
!! TAAATTCATGAGCTTTTGTT+TGG - chr2.1:9765361-9765380 None:intergenic 25.0%
!! TAAATTTTACAAATTCGTGG+TGG - chr2.1:9769006-9769025 None:intergenic 25.0%
!! TAATGGTAGTGAAATTATGT+TGG + chr2.1:9766094-9766113 MS.gene54859:intron 25.0%
!! TACTTTTGACAATTGAATTG+TGG - chr2.1:9765527-9765546 None:intergenic 25.0%
!! TTAGTGAATGTTTTGTACTA+TGG - chr2.1:9769051-9769070 None:intergenic 25.0%
!! TTATTCTTTAAAAATGTCCC+CGG - chr2.1:9766385-9766404 None:intergenic 25.0%
!! TTCATTTTCATTGAAACTAG+AGG + chr2.1:9768018-9768037 MS.gene54859:intron 25.0%
!! TTTTTGTTCTATTGAGAACA+AGG - chr2.1:9767635-9767654 None:intergenic 25.0%
!!! ACAAAAGTGTCACAAAATAT+TGG + chr2.1:9767931-9767950 MS.gene54859:intron 25.0%
!!! AGAAAAAGGCACTATATATT+AGG - chr2.1:9767246-9767265 None:intergenic 25.0%
!!! CAAAAGTGTCACAAAATATT+GGG + chr2.1:9767932-9767951 MS.gene54859:intron 25.0%
!!! GTTTTTTTTTGTTGTGAAAC+CGG - chr2.1:9767216-9767235 None:intergenic 25.0%
!!! TTTGAAGGGATTATCTTTTT+TGG - chr2.1:9767831-9767850 None:intergenic 25.0%
!!! TTTTTTTAGGTTCAATGCAT+TGG + chr2.1:9765850-9765869 MS.gene54859:intron 25.0%
AAAAACTATTACCATGGCAA+TGG - chr2.1:9766444-9766463 None:intergenic 30.0%
AACAGAAGCTATGATAGAAA+TGG - chr2.1:9765629-9765648 None:intergenic 30.0%
AATTCCTAAAAAGAAGACCT+TGG - chr2.1:9768729-9768748 None:intergenic 30.0%
ACTAACCTGAAATGTTATTG+TGG - chr2.1:9766017-9766036 None:intergenic 30.0%
AGAAAATAGACATCACTGAA+AGG + chr2.1:9768042-9768061 MS.gene54859:intron 30.0%
AGATGGGATTATATTCAAGA+GGG + chr2.1:9768605-9768624 MS.gene54859:intron 30.0%
AGCATGTATGATTCATTCTT+GGG + chr2.1:9765949-9765968 MS.gene54859:CDS 30.0%
ATTGAATTGTGGATCTATGA+AGG - chr2.1:9765516-9765535 None:intergenic 30.0%
CTCAGTATCAGAAATATAGA+TGG + chr2.1:9765561-9765580 MS.gene54859:CDS 30.0%
CTTGATTGATGCTTATATCA+AGG - chr2.1:9767575-9767594 None:intergenic 30.0%
GAGTAAATCTATCAGAATCA+CGG - chr2.1:9765721-9765740 None:intergenic 30.0%
GGTGTTAAATATAGATCCTA+CGG - chr2.1:9768517-9768536 None:intergenic 30.0%
GTGAGCAATAAAGTATGAAA+CGG + chr2.1:9766335-9766354 MS.gene54859:intron 30.0%
TAGCATGTATGATTCATTCT+TGG + chr2.1:9765948-9765967 MS.gene54859:CDS 30.0%
TATCTCCACAATAACATTTC+AGG + chr2.1:9766009-9766028 MS.gene54859:CDS 30.0%
TCCTATGCAAAGAAAGAAAA+AGG - chr2.1:9767260-9767279 None:intergenic 30.0%
TGAGCAATAAAGTATGAAAC+GGG + chr2.1:9766336-9766355 MS.gene54859:intron 30.0%
TGTTAGATTTAGTGTAGGTT+TGG + chr2.1:9765645-9765664 MS.gene54859:intron 30.0%
TTGAATTGTGGATCTATGAA+GGG - chr2.1:9765515-9765534 None:intergenic 30.0%
TTTGACATTTGAATGCAGAT+GGG + chr2.1:9768589-9768608 MS.gene54859:intron 30.0%
! AATAAAGTATGAAACGGGTT+TGG + chr2.1:9766341-9766360 MS.gene54859:intron 30.0%
! ATCCATTTTGTAGTTACTAG+CGG + chr2.1:9766247-9766266 MS.gene54859:intron 30.0%
! GAAACACGTGTTTTCTTTTT+CGG - chr2.1:9766861-9766880 None:intergenic 30.0%
! TATTTCTGATACTGAGTATC+AGG - chr2.1:9765557-9765576 None:intergenic 30.0%
! TTTCTTTTCCTGATCAAAAC+TGG + chr2.1:9766643-9766662 MS.gene54859:intron 30.0%
! TTTTCTCTCATTACTAGTAC+TGG - chr2.1:9765414-9765433 None:intergenic 30.0%
! TTTTGACATTTGAATGCAGA+TGG + chr2.1:9768588-9768607 MS.gene54859:intron 30.0%
!! AATGAAAATGAAAAGTGCCA+TGG - chr2.1:9768010-9768029 None:intergenic 30.0%
!! GATTTTCTAGCAAAGTATAG+GGG + chr2.1:9765872-9765891 MS.gene54859:CDS 30.0%
!! GGATTTTCTAGCAAAGTATA+GGG + chr2.1:9765871-9765890 MS.gene54859:CDS 30.0%
!! GTAGTTTACTGACTTTATGT+AGG - chr2.1:9767913-9767932 None:intergenic 30.0%
!! TAAATATGCCAGTTTTGATC+AGG - chr2.1:9766654-9766673 None:intergenic 30.0%
!! TGGATTTTCTAGCAAAGTAT+AGG + chr2.1:9765870-9765889 MS.gene54859:CDS 30.0%
!!! ATGTATTGGTTTTCAACACA+TGG + chr2.1:9768461-9768480 MS.gene54859:CDS 30.0%
AACACCAAATATAAGACGGA+TGG - chr2.1:9766911-9766930 None:intergenic 35.0%
AAGTTGGACTCAATAAAGAG+TGG + chr2.1:9768418-9768437 MS.gene54859:CDS 35.0%
ACACGATTGATTGTGATTTG+TGG + chr2.1:9768247-9768266 MS.gene54859:intron 35.0%
ACTATCATTTACCATTGCCA+TGG + chr2.1:9766430-9766449 MS.gene54859:intron 35.0%
AGAAGAACATTCCAAGTATC+AGG - chr2.1:9769454-9769473 None:intergenic 35.0%
AGAGAAACACAACCATTCTT+TGG + chr2.1:9769244-9769263 MS.gene54859:CDS 35.0%
AGCTATGATAGAAATGGAGA+AGG - chr2.1:9765623-9765642 None:intergenic 35.0%
AGTAATGAGAGAAAATTCGC+TGG + chr2.1:9765419-9765438 MS.gene54859:CDS 35.0%
ATAACACTACTATACCCTTC+TGG - chr2.1:9769394-9769413 None:intergenic 35.0%
ATACACTACATTGTTGACAC+TGG - chr2.1:9768277-9768296 None:intergenic 35.0%
ATTGTACTTTCCCTCTTCTT+TGG + chr2.1:9766607-9766626 MS.gene54859:intron 35.0%
CAAATCACAATCAATCGTGT+TGG - chr2.1:9768247-9768266 None:intergenic 35.0%
CAATTAGGTGAAAGACAGAA+AGG - chr2.1:9766167-9766186 None:intergenic 35.0%
CAGATGGGATTATATTCAAG+AGG + chr2.1:9768604-9768623 MS.gene54859:intron 35.0%
CCACATTGTGTGATAAAAGA+AGG + chr2.1:9767955-9767974 MS.gene54859:intron 35.0%
CTACAAAGGTTTGACAACTT+GGG + chr2.1:9768667-9768686 MS.gene54859:CDS 35.0%
CTTGGTATAGAACAAGTGAA+AGG - chr2.1:9765590-9765609 None:intergenic 35.0%
CTTTCACTTGTTCTATACCA+AGG + chr2.1:9765588-9765607 MS.gene54859:CDS 35.0%
CTTTCTGTCTTTCACCTAAT+TGG + chr2.1:9766165-9766184 MS.gene54859:intron 35.0%
CTTTGTAGAACGCAATGAAA+CGG - chr2.1:9768655-9768674 None:intergenic 35.0%
GAATAGAGCTTAATCGCTTA+AGG - chr2.1:9767194-9767213 None:intergenic 35.0%
GCTTCTGTTAGATTTAGTGT+AGG + chr2.1:9765640-9765659 MS.gene54859:intron 35.0%
GTCACATCTAGAAAATACAC+TGG - chr2.1:9769340-9769359 None:intergenic 35.0%
GTGTGCGGAATAGAAATAAT+TGG - chr2.1:9768354-9768373 None:intergenic 35.0%
TAAGCGATTAAGCTCTATTC+CGG + chr2.1:9767194-9767213 MS.gene54859:intron 35.0%
TACATGCTAGTGAATTGAAC+TGG - chr2.1:9765937-9765956 None:intergenic 35.0%
TCTACAAAGGTTTGACAACT+TGG + chr2.1:9768666-9768685 MS.gene54859:CDS 35.0%
TCTCAAGTAGTGTAGTACTT+TGG + chr2.1:9768082-9768101 MS.gene54859:intron 35.0%
! CAAACCAAGGTCTTCTTTTT+AGG + chr2.1:9768722-9768741 MS.gene54859:CDS 35.0%
! CAATAAAGAGTGGTAATGCA+TGG + chr2.1:9768428-9768447 MS.gene54859:CDS 35.0%
! CCTTCTTTTATCACACAATG+TGG - chr2.1:9767958-9767977 None:intergenic 35.0%
! CTCATTACTAGTACTGGAAA+CGG - chr2.1:9765408-9765427 None:intergenic 35.0%
! GCCTTTTTCTTTCTTTGCAT+AGG + chr2.1:9767256-9767275 MS.gene54859:intron 35.0%
! GTGAATGTTTTGTACTATGG+TGG - chr2.1:9769048-9769067 None:intergenic 35.0%
!! GGGAAAAGGTATTGACAATT+TGG - chr2.1:9767311-9767330 None:intergenic 35.0%
!!! ACACATAGATTTTGGCTTAC+TGG - chr2.1:9768982-9769001 None:intergenic 35.0%
!!! GAGAAGGAATACCTTGTTTT+TGG - chr2.1:9765977-9765996 None:intergenic 35.0%
AACACGTGTTTCTCAGACTA+TGG + chr2.1:9766869-9766888 MS.gene54859:intron 40.0%
AAGGTGACTCAACTCAAAGT+AGG + chr2.1:9765692-9765711 MS.gene54859:intron 40.0%
AATTCGCTGGAAGATGTAAC+TGG + chr2.1:9765432-9765451 MS.gene54859:CDS 40.0%
ACAAAACATGGGTTCACACA+AGG - chr2.1:9766210-9766229 None:intergenic 40.0%
ACAACTTACTCGTAATGCAC+AGG - chr2.1:9768755-9768774 None:intergenic 40.0%
ACGTGCAAAGAAGAAAAGGT+TGG - chr2.1:9767460-9767479 None:intergenic 40.0%
AGAAAAGATGCACATCCAGA+AGG + chr2.1:9769376-9769395 MS.gene54859:CDS 40.0%
AGGAAAAGTCATGAAAGCAG+AGG - chr2.1:9767893-9767912 None:intergenic 40.0%
ATGGAGAGGAATGGATGTAT+TGG + chr2.1:9768447-9768466 MS.gene54859:CDS 40.0%
ATGTCTACGTTCCAAAGAAG+AGG - chr2.1:9766621-9766640 None:intergenic 40.0%
ATTCTTGGGTGCCAAAAACA+AGG + chr2.1:9765963-9765982 MS.gene54859:CDS 40.0%
CAAAGAACACATCACTTGCA+TGG - chr2.1:9766144-9766163 None:intergenic 40.0%
CAAGAAGAAGGATCATAGAG+AGG - chr2.1:9765491-9765510 None:intergenic 40.0%
CACCAATGACTACAATCTGT+TGG - chr2.1:9769418-9769437 None:intergenic 40.0%
CGTTTCATTGCGTTCTACAA+AGG + chr2.1:9768653-9768672 MS.gene54859:CDS 40.0%
GAAAAGATGCACATCCAGAA+GGG + chr2.1:9769377-9769396 MS.gene54859:CDS 40.0%
GAGTGAATTCGCCAGAATTA+AGG + chr2.1:9765673-9765692 MS.gene54859:intron 40.0%
GAGTTGAGTCACCTTAATTC+TGG - chr2.1:9765687-9765706 None:intergenic 40.0%
GATCATAGAGAGGATACGAA+GGG - chr2.1:9765481-9765500 None:intergenic 40.0%
GGAGAAGGAGATATATACCT+TGG - chr2.1:9765608-9765627 None:intergenic 40.0%
GGGTACTTCAAACCAAAGAA+TGG - chr2.1:9769259-9769278 None:intergenic 40.0%
TCCATGTTGGTGTGAAACAA+TGG + chr2.1:9766309-9766328 MS.gene54859:intron 40.0%
TCCATTGTTTCACACCAACA+TGG - chr2.1:9766313-9766332 None:intergenic 40.0%
TCTATGAAGGGACAAGAAGA+AGG - chr2.1:9765503-9765522 None:intergenic 40.0%
TCTATTCCGCACACCATATT+TGG + chr2.1:9768360-9768379 MS.gene54859:CDS 40.0%
TGCCAACAGATTGTAGTCAT+TGG + chr2.1:9769413-9769432 MS.gene54859:CDS 40.0%
TGGGATTATATTCAAGAGGG+TGG + chr2.1:9768608-9768627 MS.gene54859:CDS 40.0%
TGTAAATCCAGCTCAAACCA+AGG + chr2.1:9768709-9768728 MS.gene54859:CDS 40.0%
TGTCTACGTTCCAAAGAAGA+GGG - chr2.1:9766620-9766639 None:intergenic 40.0%
TTAAAAATGTCCCCGGCAAA+AGG - chr2.1:9766378-9766397 None:intergenic 40.0%
TTATATTCAAGAGGGTGGCA+AGG + chr2.1:9768613-9768632 MS.gene54859:CDS 40.0%
! AAAGTATGAAACGGGTTTGG+TGG + chr2.1:9766344-9766363 MS.gene54859:intron 40.0%
! GTCATGTGGTCCATTTTGAA+GGG - chr2.1:9767845-9767864 None:intergenic 40.0%
! TAACTGGTTTCGTGGCAAAT+GGG + chr2.1:9765448-9765467 MS.gene54859:CDS 40.0%
! TCTCTCATGCATGATTTTGC+TGG - chr2.1:9769229-9769248 None:intergenic 40.0%
! TGGTTTTCAACACATGGCAT+TGG + chr2.1:9768467-9768486 MS.gene54859:CDS 40.0%
! TGTCATGTGGTCCATTTTGA+AGG - chr2.1:9767846-9767865 None:intergenic 40.0%
! TTTGACAACTTGGGCTAGAT+GGG + chr2.1:9768676-9768695 MS.gene54859:CDS 40.0%
!! GATAGCACTTTGCTTTGAGA+AGG - chr2.1:9765993-9766012 None:intergenic 40.0%
!! TTTTCAACACATGGCATTGG+TGG + chr2.1:9768470-9768489 MS.gene54859:CDS 40.0%
!!! GTTTTCTTTTTCGGTCTAGC+TGG - chr2.1:9766852-9766871 None:intergenic 40.0%
ACCTTGACCGTGAGAACATT+GGG + chr2.1:9768386-9768405 MS.gene54859:CDS 45.0%
ACTTGCGCAAAGTATGTGTG+AGG + chr2.1:9768918-9768937 MS.gene54859:intron 45.0%
CAAAATGGACCACATGACAC+TGG + chr2.1:9767847-9767866 MS.gene54859:intron 45.0%
CGCCGCTAGTAACTACAAAA+TGG - chr2.1:9766252-9766271 None:intergenic 45.0%
CGCTCCATCCGTCTTATATT+TGG + chr2.1:9766904-9766923 MS.gene54859:intron 45.0%
CGGTCAAGGTCTACCAAATA+TGG - chr2.1:9768376-9768395 None:intergenic 45.0%
CTTCTTCATGCAGCTCTCTT+TGG + chr2.1:9769469-9769488 MS.gene54859:CDS 45.0%
GGATCATAGAGAGGATACGA+AGG - chr2.1:9765482-9765501 None:intergenic 45.0%
GGTAAATTAGGGGGAGAGAT+TGG + chr2.1:9769197-9769216 MS.gene54859:intron 45.0%
GGTCTACCAAATATGGTGTG+CGG - chr2.1:9768369-9768388 None:intergenic 45.0%
TCACTGAAAGGAGTTGAGTG+AGG + chr2.1:9768054-9768073 MS.gene54859:intron 45.0%
TTCCAAGTATCAGGAAGTCC+TGG - chr2.1:9769445-9769464 None:intergenic 45.0%
TTCCAGGACTTCCTGATACT+TGG + chr2.1:9769440-9769459 MS.gene54859:CDS 45.0%
! AAGAAGACCTTGGTTTGAGC+TGG - chr2.1:9768719-9768738 None:intergenic 45.0%
! AAGAGTGGTAATGCATGGAG+AGG + chr2.1:9768433-9768452 MS.gene54859:CDS 45.0%
! CAGAGGAGTGCATCTGAATT+AGG - chr2.1:9767876-9767895 None:intergenic 45.0%
! GGAAGATGTAACTGGTTTCG+TGG + chr2.1:9765440-9765459 MS.gene54859:CDS 45.0%
! GGTAGTTGTTGCTGTTGTGT+TGG - chr2.1:9765387-9765406 None:intergenic 45.0%
! GTAACTGGTTTCGTGGCAAA+TGG + chr2.1:9765447-9765466 MS.gene54859:CDS 45.0%
! GTGGTGGCACACATAGATTT+TGG - chr2.1:9768990-9769009 None:intergenic 45.0%
! GTTACTAGCGGCGAATTTTG+TGG + chr2.1:9766259-9766278 MS.gene54859:intron 45.0%
! GTTTGACAACTTGGGCTAGA+TGG + chr2.1:9768675-9768694 MS.gene54859:CDS 45.0%
! TGGTAATGCATGGAGAGGAA+TGG + chr2.1:9768438-9768457 MS.gene54859:CDS 45.0%
! TGTAGTCATTGGTGTCTTCC+AGG + chr2.1:9769424-9769443 MS.gene54859:CDS 45.0%
!! CATTGGGCGTGTTCTAAAGT+TGG + chr2.1:9768402-9768421 MS.gene54859:CDS 45.0%
!! TTTGGTTTGAAGTACCCAGC+AGG + chr2.1:9769262-9769281 MS.gene54859:CDS 45.0%
!! ATTTAAAAAATACATTTATT+GGG + chr2.1:9766552-9766571 MS.gene54859:intron 5.0%
!! TATTTAAAAAATACATTTAT+TGG + chr2.1:9766551-9766570 MS.gene54859:intron 5.0%
!!! ATATTTAATTTATCTTTTTT+TGG + chr2.1:9766667-9766686 MS.gene54859:intron 5.0%
!!! TATTAATATTATTTTCAAAA+AGG - chr2.1:9767747-9767766 None:intergenic 5.0%
AATGGACCACATGACACTGG+TGG + chr2.1:9767850-9767869 MS.gene54859:intron 50.0%
ACGGTTGTGCATTTCCAGTG+TGG - chr2.1:9768498-9768517 None:intergenic 50.0%
AGCAGGAACACCAATGGCTT+GGG + chr2.1:9769279-9769298 MS.gene54859:CDS 50.0%
ATTAGGCCACCAGTGTCATG+TGG - chr2.1:9767859-9767878 None:intergenic 50.0%
CACTGGAAATGCACAACCGT+AGG + chr2.1:9768498-9768517 MS.gene54859:intron 50.0%
CGGTTGTGCATTTCCAGTGT+GGG - chr2.1:9768497-9768516 None:intergenic 50.0%
GAACACGCCCAATGTTCTCA+CGG - chr2.1:9768396-9768415 None:intergenic 50.0%
GACCTTGACCGTGAGAACAT+TGG + chr2.1:9768385-9768404 MS.gene54859:CDS 50.0%
GGGGACGTGCAAAGAAGAAA+AGG - chr2.1:9767464-9767483 None:intergenic 50.0%
! AAGCCATTGGTGTTCCTGCT+GGG - chr2.1:9769279-9769298 None:intergenic 50.0%
! GTGGAGGCTTTTCCTTTTGC+CGG + chr2.1:9766363-9766382 MS.gene54859:intron 50.0%
! TGGAGGCTTTTCCTTTTGCC+GGG + chr2.1:9766364-9766383 MS.gene54859:intron 50.0%
!! GTATGAAACGGGTTTGGTGG+AGG + chr2.1:9766347-9766366 MS.gene54859:intron 50.0%
CAGCAGGAACACCAATGGCT+TGG + chr2.1:9769278-9769297 MS.gene54859:CDS 55.0%
GCCCAATGTTCTCACGGTCA+AGG - chr2.1:9768390-9768409 None:intergenic 55.0%
GTACCCAGCAGGAACACCAA+TGG + chr2.1:9769273-9769292 MS.gene54859:CDS 55.0%
! CAAGCCATTGGTGTTCCTGC+TGG - chr2.1:9769280-9769299 None:intergenic 55.0%
! GGAGGCTTTTCCTTTTGCCG+GGG + chr2.1:9766365-9766384 MS.gene54859:intron 55.0%
!! TGGCATTGGTGGACCCACAC+TGG + chr2.1:9768481-9768500 MS.gene54859:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 9765308 9769495 9765308 ID=MS.gene54859
chr2.1 mRNA 9765308 9769495 9765308 ID=MS.gene54859.t1;Parent=MS.gene54859
chr2.1 exon 9765308 9765609 9765308 ID=MS.gene54859.t1.exon1;Parent=MS.gene54859.t1
chr2.1 CDS 9765308 9765609 9765308 ID=cds.MS.gene54859.t1;Parent=MS.gene54859.t1
chr2.1 exon 9765859 9766030 9765859 ID=MS.gene54859.t1.exon2;Parent=MS.gene54859.t1
chr2.1 CDS 9765859 9766030 9765859 ID=cds.MS.gene54859.t1;Parent=MS.gene54859.t1
chr2.1 exon 9768340 9768515 9768340 ID=MS.gene54859.t1.exon3;Parent=MS.gene54859.t1
chr2.1 CDS 9768340 9768515 9768340 ID=cds.MS.gene54859.t1;Parent=MS.gene54859.t1
chr2.1 exon 9768607 9768765 9768607 ID=MS.gene54859.t1.exon4;Parent=MS.gene54859.t1
chr2.1 CDS 9768607 9768765 9768607 ID=cds.MS.gene54859.t1;Parent=MS.gene54859.t1
chr2.1 exon 9769207 9769495 9769207 ID=MS.gene54859.t1.exon5;Parent=MS.gene54859.t1
chr2.1 CDS 9769207 9769495 9769207 ID=cds.MS.gene54859.t1;Parent=MS.gene54859.t1
Gene Sequence

>MS.gene54859

ATGGGTTTTCTGTTACGGACTCTGTTTTTACTTCTTCTGTTTTCTTCACACCAAACAAAAGCTCATGAATTTAACTCCAACACAACAGCAACAACTACCGTTTCCAGTACTAGTAATGAGAGAAAATTCGCTGGAAGATGTAACTGGTTTCGTGGCAAATGGGTCTATGACCCTTCGTATCCTCTCTATGATCCTTCTTCTTGTCCCTTCATAGATCCACAATTCAATTGTCAAAAGTATGGCAGACCTGATACTCAGTATCAGAAATATAGATGGCAACCTTTCACTTGTTCTATACCAAGGTATATATCTCCTTCTCCATTTCTATCATAGCTTCTGTTAGATTTAGTGTAGGTTTGGTATCAGAGTGAATTCGCCAGAATTAAGGTGACTCAACTCAAAGTAGGTCACCGTGATTCTGATAGATTTACTCTGATACCAAACATTATACTAGCTACTTATATTGTATAACTAATTTTTATTTATTTCTAATAGTTTTAAGTGTGATAAATGTAAGTTAGAAAATGAAAATGTGTTTGGTATTTTTTTAGGTTCAATGCATTGGATTTTCTAGCAAAGTATAGGGGAAAAAAGATTATGTTTGTTGGTGATTCTTTGAGCTTAAACCAGTTCAATTCACTAGCATGTATGATTCATTCTTGGGTGCCAAAAACAAGGTATTCCTTCTCAAAGCAAAGTGCTATCTCCACAATAACATTTCAGGTTAGTTTTTGTATTTCTATGTTTTTTTTCTCTTTAATTTCGATTTTTTGATACTTTTGAATTTAATGGTAGTGAAATTATGTTGGTTATGTTTTGGTGTGTAATTGTGTCCATGCAAGTGATGTGTTCTTTGCCTTTCTGTCTTTCACCTAATTGGAAACTTTATTGAGTAATTGCCTTGTGTGAACCCATGTTTTGTTTTTCTTCAAATCTACGATCCATTTTGTAGTTACTAGCGGCGAATTTTGTGGTCAAATTATTATTTATTTTTATTATTTTCCATGTTGGTGTGAAACAATGGAGCGTGAGCAATAAAGTATGAAACGGGTTTGGTGGAGGCTTTTCCTTTTGCCGGGGACATTTTTAAAGAATAATAAATGTGAATCTTCCATGGTTATTACTATCATTTACCATTGCCATGGTAATAGTTTTTTCATAAAAAATGCCATGGTAATAATAGATAGTAATTCATGTTTTCTATTAACATATTTTCCTCTTACAAAGGATTTAAAAACAATAATATTTAAAAAATACATTTATTGGGGGGAAATATAAATATATTAACATTTTCATATGATTGTACTTTCCCTCTTCTTTGGAACGTAGACATTATTTCTTTTCCTGATCAAAACTGGCATATTTAATTTATCTTTTTTTGGTTGTTATGATTATTTAATAGATGCTTGTTAGTATTCTTCAAACTTTTATCAAAGTATATAAATTTTAAAATATTTTTTTTATACAAATATTCGATATATTTTAAAAGTTTAATTTCAATGTAATTTTTAATAAATATTTTAAAAGTTTAATTTCTTTAACCAGCTAGACCGAAAAAGAAAACACGTGTTTCTCAGACTATGGAATAGATGCATACGCTCCATCCGTCTTATATTTGGTGTTCTATTTAAGTTTGCATTAAGAATGTACCAAAAATGAAATTTGTATTGAAAGAATGATTAATAGTGTTGATTTAAATGATAAATATGTGTCATTTACCAAACATTCTTATTAATTATAATTAGTAAAATAATTATAGATAATTGAAATGCAGTAAATAAATTATATGTTAGTGGAAAAGAATAATACAATATTAGTATGGTAAAAAAAGATACAAACTAGTGGTTGAAGTCTTGAACGAGAGTTTCGTCATTTATATGTCACCTTAAGCGATTAAGCTCTATTCCGGTTTCACAACAAAAAAAAACTATTGATCCTAATATATAGTGCCTTTTTCTTTCTTTGCATAGGAAATGCTCCAATAAAATTATATTCATGATCCAAATTGTCAATACCTTTTCCCTTTATATAGAAACTTTAGGAACAAATTTCTTAATTAGCAATAATTAGTGTTTTGGCATCTAAGTTTTTCTAGCACTCCAACAATCATCATTAGTAGTAACTAAATTATGAACACAACGTTACTCAGCCAACCTTTTCTTCTTTGCACGTCCCCTTTTTAAACTGTAATGATCAATAATTTGATATCTAGTTTTTCTAACTTCAAGAAATATCTGATTGAATACATGCTTTATTATGTTTTCCCTTGATATAAGCATCAATCAAGCTATTCACATTAAAAAAATAGGAGTAAAAAATGTGTTCCTTGTTCTCAATAGAACAAAAAATAAAATTTGAAGTGGGCCATATGAATTAAATTGTAGTACTAACAGTAGTATATACTATATATTTATTCATTATAGGCTTGATGACATTCCTTTTTGAAAATAATATTAATACTGCATAAAATTAGTAATTTCTTCATTAATCTCTTGCATTTGCTGTCTTTCAATGTTTGTACCAAAAAAGATAATCCCTTCAAAATGGACCACATGACACTGGTGGCCTAATTCAGATGCACTCCTCTGCTTTCATGACTTTTCCTACATAAAGTCAGTAAACTACAAAAGTGTCACAAAATATTGGGCCACATTGTGTGATAAAAGAAGGAATTTTCCTTTCTTCTAGTAATTTATATTCCATGGCACTTTTCATTTTCATTGAAACTAGAGGCAGAAAATAGACATCACTGAAAGGAGTTGAGTGAGGAAATTTCTCAAGTAGTGTAGTACTTTGGTAGAAAGTTATTTAAATAGAAAATTAGATGAAAATTATGTACAATCATTATATGTAAGGAGTTTTTACACTAACAATCAATTTTAACCGTCAAATGATTTATAAAAGTTTGACTTTTATCATAATCACTTCTAAAACGACCAACACGATTGATTGTGATTTGTGGTGTGCCAGTGTCAACAATGTAGTGTATGAAAACTAAGCTTAATAATTAGTATTATTTGAATTATTTTCAGGATTATGGTCTCCAATTATTTCTATTCCGCACACCATATTTGGTAGACCTTGACCGTGAGAACATTGGGCGTGTTCTAAAGTTGGACTCAATAAAGAGTGGTAATGCATGGAGAGGAATGGATGTATTGGTTTTCAACACATGGCATTGGTGGACCCACACTGGAAATGCACAACCGTAGGATCTATATTTAACACCATGATCATAATCAATTCTGTTATTAATGAGGTGATTAATTAGTTGTTGTTTTTTTGACATTTGAATGCAGATGGGATTATATTCAAGAGGGTGGCAAGGTGTACAAAGACATGAACCGTTTCATTGCGTTCTACAAAGGTTTGACAACTTGGGCTAGATGGGTTAACATCAATGTAAATCCAGCTCAAACCAAGGTCTTCTTTTTAGGAATTTCTCCTGTGCATTACGAGTAAGTTGTTCTATCTACTTCAATTTAATCTATTATTTAGTGCGTGTTTGAATTCACATTGTTTTTTTACAGAATTACGGTGTACTATCGTGATTTTAAATTTCAGTAGAATCAGGGTCACTTTACTTTTGTTACACTTGTTATGACTTCAAACTTGCGCAAAGTATGTGTGAGGTTTTACAAAAGAAATCATTAGAATGTTTGGTATCGCAGCCAGTAAGCCAAAATCTATGTGTGCCACCACGAATTTGTAAAATTTAGAGTGTAGTTTTTGCAAAACCACCATAGTACAAAACATTCACTAAACTTGCTTATGTCAAAAGTAATTTTCGTAAAAGTGATAAAAAAAAGTTATTCTTTTTGTTACTAAATTGTGTGCCAATTACTAGACTAAGTTTTATCAACTATATTTATAATGGTGTATGATATTTGGTAAATTAGGGGGAGAGATTGGAATCAACCAGCAAAATCATGCATGAGAGAAACACAACCATTCTTTGGTTTGAAGTACCCAGCAGGAACACCAATGGCTTGGGTAATAGTGAATAAAGTATTGAGCAGATTAAAGAAGCCAGTGTATTTTCTAGATGTGACAACATTGTCACAGTACAGAAAAGATGCACATCCAGAAGGGTATAGTAGTGTTATGCCAACAGATTGTAGTCATTGGTGTCTTCCAGGACTTCCTGATACTTGGAATGTTCTTCTTCATGCAGCTCTCTTTGGTTGA
Protein sequence

>MS.gene54859.t1

MGFLLRTLFLLLLFSSHQTKAHEFNSNTTATTTVSSTSNERKFAGRCNWFRGKWVYDPSYPLYDPSSCPFIDPQFNCQKYGRPDTQYQKYRWQPFTCSIPRFNALDFLAKYRGKKIMFVGDSLSLNQFNSLACMIHSWVPKTRYSFSKQSAISTITFQDYGLQLFLFRTPYLVDLDRENIGRVLKLDSIKSGNAWRGMDVLVFNTWHWWTHTGNAQPWDYIQEGGKVYKDMNRFIAFYKGLTTWARWVNINVNPAQTKVFFLGISPVHYEGRDWNQPAKSCMRETQPFFGLKYPAGTPMAWVIVNKVLSRLKKPVYFLDVTTLSQYRKDAHPEGYSSVMPTDCSHWCLPGLPDTWNVLLHAALFG