Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55751.t1 | P48488.1 | 100 | 317 | 0 | 0 | 1 | 317 | 1 | 317 | 1.80E-188 | 668.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55751.t1 | P48488 | 100.0 | 317 | 0 | 0 | 1 | 317 | 1 | 317 | 4.2e-191 | 668.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55751.t1 | B7FHM9 | 99.7 | 317 | 1 | 0 | 1 | 317 | 1 | 317 | 8.2e-188 | 665.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene06018 | MS.gene55751 | 0.833283 | 5.83E-56 | -1.69E-46 |
MS.gene060933 | MS.gene55751 | 0.802515 | 5.41E-49 | -1.69E-46 |
MS.gene060937 | MS.gene55751 | 0.8104 | 1.17E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene55751 | MS.gene49664 | PPI |
MS.gene55751 | MS.gene032713 | PPI |
MS.gene55751 | MS.gene072506 | PPI |
MS.gene55751 | MS.gene007026 | PPI |
MS.gene55751 | MS.gene058508 | PPI |
MS.gene55751 | MS.gene32487 | PPI |
MS.gene55751 | MS.gene99972 | PPI |
MS.gene55751 | MS.gene000895 | PPI |
MS.gene55751 | MS.gene50106 | PPI |
MS.gene55751 | MS.gene63084 | PPI |
MS.gene55751 | MS.gene23035 | PPI |
MS.gene55751 | MS.gene23125 | PPI |
MS.gene55751 | MS.gene050914 | PPI |
MS.gene55751 | MS.gene25326 | PPI |
MS.gene55751 | MS.gene29552 | PPI |
MS.gene55751 | MS.gene58553 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55751.t1 | MTR_8g098980 | 99.685 | 317 | 1 | 0 | 1 | 317 | 1 | 317 | 0.0 | 654 |
MS.gene55751.t1 | MTR_1g079950 | 79.114 | 316 | 64 | 2 | 1 | 315 | 30 | 344 | 0.0 | 541 |
MS.gene55751.t1 | MTR_1g079950 | 79.114 | 316 | 64 | 2 | 1 | 315 | 1 | 315 | 0.0 | 541 |
MS.gene55751.t1 | MTR_1g079950 | 79.114 | 316 | 64 | 2 | 1 | 315 | 1 | 315 | 0.0 | 540 |
MS.gene55751.t1 | MTR_1g079950 | 79.114 | 316 | 64 | 2 | 1 | 315 | 1 | 315 | 0.0 | 540 |
MS.gene55751.t1 | MTR_7g116380 | 78.165 | 316 | 67 | 2 | 1 | 315 | 1 | 315 | 0.0 | 534 |
MS.gene55751.t1 | MTR_7g116380 | 78.165 | 316 | 67 | 2 | 1 | 315 | 1 | 315 | 0.0 | 533 |
MS.gene55751.t1 | MTR_5g081230 | 78.431 | 306 | 66 | 0 | 1 | 306 | 17 | 322 | 0.0 | 523 |
MS.gene55751.t1 | MTR_1g074880 | 74.603 | 315 | 78 | 2 | 1 | 314 | 1 | 314 | 0.0 | 510 |
MS.gene55751.t1 | MTR_1g074880 | 74.603 | 315 | 78 | 2 | 1 | 314 | 1 | 314 | 0.0 | 510 |
MS.gene55751.t1 | MTR_1g043240 | 75.161 | 310 | 75 | 2 | 1 | 309 | 1 | 309 | 4.52e-180 | 500 |
MS.gene55751.t1 | MTR_7g112870 | 73.871 | 310 | 74 | 2 | 1 | 310 | 5 | 307 | 1.16e-176 | 491 |
MS.gene55751.t1 | MTR_8g005010 | 77.163 | 289 | 65 | 1 | 6 | 294 | 4 | 291 | 4.11e-174 | 484 |
MS.gene55751.t1 | MTR_1g079950 | 82.422 | 256 | 44 | 1 | 61 | 315 | 34 | 289 | 1.19e-165 | 463 |
MS.gene55751.t1 | MTR_1g074880 | 78.516 | 256 | 54 | 1 | 60 | 314 | 4 | 259 | 1.08e-157 | 441 |
MS.gene55751.t1 | MTR_1g074880 | 78.516 | 256 | 54 | 1 | 60 | 314 | 4 | 259 | 1.09e-157 | 441 |
MS.gene55751.t1 | MTR_8g085610 | 46.128 | 297 | 150 | 3 | 6 | 301 | 9 | 296 | 2.31e-96 | 287 |
MS.gene55751.t1 | MTR_7g107310 | 47.826 | 276 | 142 | 2 | 27 | 301 | 27 | 301 | 1.26e-95 | 286 |
MS.gene55751.t1 | MTR_8g085610 | 47.970 | 271 | 139 | 2 | 32 | 301 | 3 | 272 | 2.78e-94 | 281 |
MS.gene55751.t1 | MTR_5g037200 | 48.679 | 265 | 134 | 2 | 27 | 290 | 20 | 283 | 1.35e-93 | 280 |
MS.gene55751.t1 | MTR_8g062430 | 48.302 | 265 | 135 | 2 | 27 | 290 | 20 | 283 | 1.66e-93 | 280 |
MS.gene55751.t1 | MTR_5g093990 | 44.948 | 287 | 154 | 2 | 27 | 312 | 17 | 300 | 6.60e-93 | 278 |
MS.gene55751.t1 | MTR_1g039380 | 41.158 | 311 | 168 | 6 | 6 | 314 | 3 | 300 | 4.22e-90 | 271 |
MS.gene55751.t1 | MTR_1g039380 | 41.935 | 279 | 155 | 4 | 38 | 314 | 3 | 276 | 1.67e-86 | 261 |
MS.gene55751.t1 | MTR_2g087530 | 45.806 | 310 | 146 | 6 | 23 | 318 | 660 | 961 | 7.34e-82 | 267 |
MS.gene55751.t1 | MTR_1g089370 | 46.875 | 288 | 135 | 7 | 9 | 279 | 528 | 814 | 8.64e-81 | 262 |
MS.gene55751.t1 | MTR_2g087530 | 43.675 | 332 | 163 | 7 | 3 | 318 | 525 | 848 | 1.28e-80 | 262 |
MS.gene55751.t1 | MTR_4g050540 | 45.603 | 307 | 151 | 6 | 3 | 293 | 643 | 949 | 3.44e-80 | 263 |
MS.gene55751.t1 | MTR_3g452710 | 42.160 | 287 | 155 | 5 | 3 | 283 | 168 | 449 | 3.00e-70 | 226 |
MS.gene55751.t1 | MTR_3g452710 | 42.160 | 287 | 155 | 5 | 3 | 283 | 235 | 516 | 1.20e-69 | 226 |
MS.gene55751.t1 | MTR_2g100130 | 41.404 | 285 | 155 | 6 | 3 | 280 | 86 | 365 | 3.78e-68 | 218 |
MS.gene55751.t1 | MTR_2g100130 | 41.404 | 285 | 155 | 6 | 3 | 280 | 185 | 464 | 4.64e-67 | 218 |
MS.gene55751.t1 | MTR_2g100130 | 40.972 | 288 | 158 | 6 | 3 | 283 | 156 | 438 | 6.89e-67 | 217 |
MS.gene55751.t1 | MTR_2g100130 | 41.404 | 285 | 155 | 6 | 3 | 280 | 195 | 474 | 7.43e-67 | 218 |
MS.gene55751.t1 | MTR_2g100130 | 41.404 | 285 | 155 | 6 | 3 | 280 | 195 | 474 | 1.02e-66 | 218 |
MS.gene55751.t1 | MTR_2g100130 | 41.404 | 285 | 154 | 7 | 3 | 280 | 195 | 473 | 1.64e-65 | 214 |
MS.gene55751.t1 | MTR_2g100130 | 40.972 | 288 | 157 | 7 | 3 | 283 | 156 | 437 | 1.98e-65 | 213 |
MS.gene55751.t1 | MTR_2g100130 | 41.818 | 275 | 148 | 6 | 3 | 270 | 195 | 464 | 3.69e-65 | 213 |
MS.gene55751.t1 | MTR_2g100160 | 38.438 | 320 | 180 | 9 | 2 | 310 | 104 | 417 | 6.05e-61 | 200 |
MS.gene55751.t1 | MTR_5g037200 | 50.898 | 167 | 81 | 1 | 27 | 192 | 20 | 186 | 8.33e-60 | 191 |
MS.gene55751.t1 | MTR_8g072600 | 31.111 | 315 | 152 | 10 | 34 | 283 | 100 | 414 | 6.85e-36 | 135 |
MS.gene55751.t1 | MTR_8g072600 | 30.677 | 251 | 130 | 7 | 34 | 240 | 100 | 350 | 7.93e-29 | 114 |
MS.gene55751.t1 | MTR_2g099710 | 28.931 | 318 | 171 | 14 | 32 | 305 | 211 | 517 | 9.13e-22 | 96.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55751.t1 | AT1G64040 | 85.174 | 317 | 47 | 0 | 1 | 317 | 1 | 317 | 0.0 | 585 |
MS.gene55751.t1 | AT4G11240 | 83.281 | 317 | 53 | 0 | 1 | 317 | 1 | 317 | 0.0 | 578 |
MS.gene55751.t1 | AT2G29400 | 81.728 | 301 | 52 | 2 | 1 | 299 | 15 | 314 | 0.0 | 526 |
MS.gene55751.t1 | AT2G39840 | 79.070 | 301 | 63 | 0 | 1 | 301 | 14 | 314 | 0.0 | 516 |
MS.gene55751.t1 | AT5G59160 | 78.146 | 302 | 65 | 1 | 1 | 301 | 9 | 310 | 0.0 | 509 |
MS.gene55751.t1 | AT5G59160 | 78.146 | 302 | 65 | 1 | 1 | 301 | 9 | 310 | 0.0 | 509 |
MS.gene55751.t1 | AT5G59160 | 78.146 | 302 | 65 | 1 | 1 | 301 | 9 | 310 | 0.0 | 509 |
MS.gene55751.t1 | AT3G46820 | 77.152 | 302 | 68 | 1 | 1 | 301 | 9 | 310 | 0.0 | 503 |
MS.gene55751.t1 | AT5G43380 | 71.519 | 316 | 89 | 1 | 1 | 316 | 1 | 315 | 7.41e-176 | 490 |
MS.gene55751.t1 | AT5G43380 | 71.519 | 316 | 89 | 1 | 1 | 316 | 1 | 315 | 2.44e-175 | 488 |
MS.gene55751.t1 | AT5G43380 | 71.519 | 316 | 89 | 1 | 1 | 316 | 1 | 315 | 4.08e-175 | 488 |
MS.gene55751.t1 | AT5G27840 | 75.338 | 296 | 70 | 1 | 1 | 296 | 9 | 301 | 4.61e-174 | 485 |
MS.gene55751.t1 | AT5G27840 | 73.786 | 309 | 73 | 2 | 1 | 304 | 9 | 314 | 4.64e-174 | 485 |
MS.gene55751.t1 | AT5G27840 | 75.338 | 296 | 70 | 1 | 1 | 296 | 9 | 301 | 8.22e-174 | 484 |
MS.gene55751.t1 | AT5G27840 | 75.338 | 296 | 70 | 1 | 1 | 296 | 9 | 301 | 8.22e-174 | 484 |
MS.gene55751.t1 | AT3G05580 | 76.014 | 296 | 68 | 1 | 1 | 296 | 9 | 301 | 2.23e-173 | 483 |
MS.gene55751.t1 | AT3G05580 | 75.304 | 247 | 58 | 1 | 1 | 247 | 9 | 252 | 6.19e-141 | 399 |
MS.gene55751.t1 | AT2G42500 | 47.138 | 297 | 147 | 3 | 6 | 301 | 14 | 301 | 5.02e-98 | 292 |
MS.gene55751.t1 | AT3G58500 | 46.465 | 297 | 149 | 3 | 6 | 301 | 14 | 301 | 7.64e-97 | 289 |
MS.gene55751.t1 | AT5G55260 | 46.739 | 276 | 146 | 1 | 27 | 301 | 17 | 292 | 6.56e-95 | 283 |
MS.gene55751.t1 | AT1G10430 | 46.503 | 286 | 143 | 3 | 6 | 290 | 7 | 283 | 1.67e-94 | 283 |
MS.gene55751.t1 | AT1G10430 | 46.503 | 286 | 143 | 3 | 6 | 290 | 7 | 283 | 1.67e-94 | 283 |
MS.gene55751.t1 | AT1G59830 | 46.853 | 286 | 142 | 3 | 6 | 290 | 7 | 283 | 3.25e-94 | 282 |
MS.gene55751.t1 | AT1G69960 | 47.547 | 265 | 137 | 2 | 27 | 290 | 21 | 284 | 3.63e-93 | 279 |
MS.gene55751.t1 | AT4G26720 | 43.310 | 284 | 160 | 1 | 19 | 301 | 9 | 292 | 1.84e-92 | 277 |
MS.gene55751.t1 | AT1G50370 | 41.158 | 311 | 168 | 6 | 6 | 314 | 3 | 300 | 3.09e-90 | 271 |
MS.gene55751.t1 | AT3G19980 | 40.453 | 309 | 172 | 5 | 8 | 314 | 2 | 300 | 4.10e-90 | 271 |
MS.gene55751.t1 | AT5G55260 | 40.694 | 317 | 146 | 2 | 27 | 301 | 17 | 333 | 2.35e-86 | 263 |
MS.gene55751.t1 | AT1G59830 | 48.400 | 250 | 119 | 3 | 6 | 254 | 7 | 247 | 1.44e-83 | 253 |
MS.gene55751.t1 | AT2G27210 | 50.000 | 272 | 122 | 5 | 23 | 280 | 666 | 937 | 1.58e-82 | 269 |
MS.gene55751.t1 | AT2G27210 | 50.000 | 272 | 122 | 5 | 23 | 280 | 671 | 942 | 1.68e-82 | 269 |
MS.gene55751.t1 | AT1G08420 | 45.484 | 310 | 147 | 6 | 23 | 318 | 677 | 978 | 1.06e-81 | 267 |
MS.gene55751.t1 | AT1G08420 | 45.484 | 310 | 147 | 6 | 23 | 318 | 682 | 983 | 1.12e-81 | 267 |
MS.gene55751.t1 | AT4G03080 | 45.364 | 302 | 147 | 7 | 9 | 293 | 530 | 830 | 1.15e-80 | 262 |
MS.gene55751.t1 | AT2G42500 | 49.327 | 223 | 111 | 2 | 80 | 301 | 33 | 254 | 1.43e-76 | 235 |
MS.gene55751.t1 | AT1G03445 | 42.857 | 301 | 149 | 8 | 3 | 282 | 446 | 744 | 6.99e-73 | 240 |
MS.gene55751.t1 | AT1G03445 | 42.857 | 301 | 149 | 8 | 3 | 282 | 446 | 744 | 7.51e-73 | 239 |
MS.gene55751.t1 | AT2G42810 | 40.702 | 285 | 157 | 5 | 2 | 280 | 170 | 448 | 6.01e-67 | 218 |
MS.gene55751.t1 | AT2G42810 | 40.702 | 285 | 157 | 5 | 2 | 280 | 170 | 448 | 6.01e-67 | 218 |
MS.gene55751.t1 | AT2G42810 | 40.702 | 285 | 157 | 5 | 2 | 280 | 170 | 448 | 6.01e-67 | 218 |
MS.gene55751.t1 | AT2G42810 | 40.702 | 285 | 157 | 5 | 2 | 280 | 223 | 501 | 1.66e-66 | 218 |
MS.gene55751.t1 | AT2G42810 | 40.702 | 285 | 157 | 5 | 2 | 280 | 224 | 502 | 1.76e-66 | 218 |
MS.gene55751.t1 | AT2G42500 | 45.238 | 168 | 80 | 3 | 6 | 169 | 14 | 173 | 1.83e-44 | 150 |
MS.gene55751.t1 | AT2G42500 | 44.571 | 175 | 83 | 4 | 6 | 176 | 14 | 178 | 2.77e-44 | 149 |
MS.gene55751.t1 | AT2G42500 | 46.250 | 160 | 74 | 3 | 6 | 161 | 14 | 165 | 1.02e-43 | 148 |
MS.gene55751.t1 | AT5G63870 | 30.303 | 264 | 134 | 7 | 56 | 269 | 79 | 342 | 3.61e-31 | 121 |
MS.gene55751.t1 | AT5G63870 | 30.303 | 264 | 134 | 7 | 56 | 269 | 79 | 342 | 3.61e-31 | 121 |
MS.gene55751.t1 | AT5G63870 | 30.000 | 220 | 119 | 5 | 56 | 240 | 79 | 298 | 2.12e-25 | 103 |
MS.gene55751.t1 | AT1G48120 | 28.477 | 302 | 144 | 8 | 34 | 269 | 630 | 925 | 4.95e-25 | 106 |
MS.gene55751.t1 | AT5G10900 | 29.885 | 261 | 143 | 10 | 56 | 278 | 225 | 483 | 9.45e-21 | 93.2 |
MS.gene55751.t1 | AT5G10900 | 29.885 | 261 | 143 | 10 | 56 | 278 | 225 | 483 | 1.01e-20 | 93.2 |
MS.gene55751.t1 | AT5G10900 | 29.885 | 261 | 143 | 10 | 56 | 278 | 225 | 483 | 1.12e-20 | 92.8 |
Find 71 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCTCCATCAATCGTATTTA+TGG | 0.118761 | 4.3:+5236910 | MS.gene55751:CDS |
GAAGCAAATTACTTATTTCT+TGG | 0.231778 | 4.3:+5236778 | MS.gene55751:CDS |
TCAAACTCACCACAGTAATT+TGG | 0.239332 | 4.3:-5237874 | None:intergenic |
ACCTTATGAGGTGGAGTTCC+AGG | 0.245870 | 4.3:-5238006 | None:intergenic |
CGAGGTGTTTCATTTACATT+TGG | 0.254753 | 4.3:+5237189 | MS.gene55751:CDS |
TATCGGAAGACTTCAGTATC+TGG | 0.265509 | 4.3:-5237945 | None:intergenic |
TCCAACTTTGCCCTTCTTAT+CGG | 0.312310 | 4.3:-5237962 | None:intergenic |
CCATGATCTGGCACATCAAT+AGG | 0.319380 | 4.3:-5237102 | None:intergenic |
AGAAATAAGTAATTTGCTTC+AGG | 0.320791 | 4.3:-5236775 | None:intergenic |
GAGGTGTTTCATTTACATTT+GGG | 0.340319 | 4.3:+5237190 | MS.gene55751:CDS |
TGATTGCTTTAATTGTTTAC+CGG | 0.357293 | 4.3:+5236987 | MS.gene55751:CDS |
GCTTCAAGTTCAAGAAGATT+AGG | 0.359782 | 4.3:-5235523 | None:intergenic |
AAGAAGGGCAAAGTTGGATT+TGG | 0.364950 | 4.3:+5237967 | MS.gene55751:CDS |
CGTATTCGAACAGCCTTAAA+AGG | 0.372745 | 4.3:-5236741 | None:intergenic |
AGGAGAACTTCTTTCTTCTC+AGG | 0.373373 | 4.3:+5236872 | MS.gene55751:CDS |
GCCTTCTCTGCGACCTTCTG+TGG | 0.394394 | 4.3:+5237124 | MS.gene55751:CDS |
GCCTTAAAAGGTCTGAAAAC+TGG | 0.396799 | 4.3:-5236729 | None:intergenic |
CATCCCTCAAGATCTTTATC+AGG | 0.398758 | 4.3:-5237153 | None:intergenic |
GATTGATGGAGGCGCATTCA+TGG | 0.439246 | 4.3:-5236900 | None:intergenic |
GAAACCATAAATACGATTGA+TGG | 0.442568 | 4.3:-5236914 | None:intergenic |
TACAGTCACCAGCTTACGTT+TGG | 0.445882 | 4.3:-5237842 | None:intergenic |
ACCTGGAACTCCACCTCATA+AGG | 0.452558 | 4.3:+5238005 | MS.gene55751:CDS |
CATGATCTGGCACATCAATA+GGG | 0.454758 | 4.3:-5237101 | None:intergenic |
GAAGCTCCTATCAAAATTTG+TGG | 0.455039 | 4.3:+5235541 | MS.gene55751:CDS |
CCTATTGATGTGCCAGATCA+TGG | 0.458791 | 4.3:+5237102 | MS.gene55751:CDS |
GGAGGTATAATGTTCGTCTC+TGG | 0.469205 | 4.3:+5236953 | MS.gene55751:CDS |
CCCACAGAAGGTCGCAGAGA+AGG | 0.474160 | 4.3:-5237125 | None:intergenic |
ACTGAAGTCTTCCGATAAGA+AGG | 0.476810 | 4.3:+5237951 | MS.gene55751:CDS |
AGAAGATCCTTTGCATGCAT+GGG | 0.477596 | 4.3:+5237028 | MS.gene55751:CDS |
TCGCAGAGAAGGCCATGATC+TGG | 0.483085 | 4.3:-5237114 | None:intergenic |
TCCGATAAGAAGGGCAAAGT+TGG | 0.484368 | 4.3:+5237961 | MS.gene55751:CDS |
GGAGAACTTCTTTCTTCTCA+GGG | 0.491751 | 4.3:+5236873 | MS.gene55751:CDS |
AATAAGTAATTTGCTTCAGG+TGG | 0.494184 | 4.3:-5236772 | None:intergenic |
TGATAAAGATCTTGAGGGAT+GGG | 0.495424 | 4.3:+5237155 | MS.gene55751:CDS |
GCGTCTCAGGTTGTAGAAGA+TGG | 0.496210 | 4.3:+5237805 | MS.gene55751:intron |
GAGAAGATCCTTTGCATGCA+TGG | 0.497979 | 4.3:+5237027 | MS.gene55751:CDS |
TCAGCTTTGTACTTCTGCTA+AGG | 0.513143 | 4.3:+5235483 | MS.gene55751:CDS |
TCTCTTGGAGATGGATGATA+CGG | 0.513600 | 4.3:+5235375 | None:intergenic |
CCTTCTCTGCGACCTTCTGT+GGG | 0.527902 | 4.3:+5237125 | MS.gene55751:CDS |
TTTAAGGCTGTTCGAATACG+GGG | 0.546220 | 4.3:+5236744 | MS.gene55751:CDS |
TGATCCTGATAAAGATCTTG+AGG | 0.546600 | 4.3:+5237149 | MS.gene55751:CDS |
ATTTACATTTGGGGCTGACA+AGG | 0.548915 | 4.3:+5237200 | MS.gene55751:CDS |
AAAGGTCTGAAAACTGGCCA+TGG | 0.549539 | 4.3:-5236723 | None:intergenic |
TCTGATATGTAGAGCTCACC+AGG | 0.551295 | 4.3:+5237254 | MS.gene55751:CDS |
CTGATAAAGATCTTGAGGGA+TGG | 0.553149 | 4.3:+5237154 | MS.gene55751:CDS |
AGGTGTTTCATTTACATTTG+GGG | 0.560742 | 4.3:+5237191 | MS.gene55751:CDS |
TTGTTTGCAGGAGATGTCCA+TGG | 0.568088 | 4.3:+5236706 | MS.gene55751:intron |
TCGTCTACTAGAGCAGCAAC+CGG | 0.568940 | 4.3:-5237006 | None:intergenic |
TGCATATAAAATCAAATACA+AGG | 0.570871 | 4.3:+5236852 | MS.gene55751:CDS |
TGTGGTGAGTTTGATAATGC+CGG | 0.578788 | 4.3:+5237883 | MS.gene55751:CDS |
GATCCTGATAAAGATCTTGA+GGG | 0.581991 | 4.3:+5237150 | MS.gene55751:CDS |
CTTGGAGATTATGTTGATCG+TGG | 0.584311 | 4.3:+5236796 | MS.gene55751:CDS |
ATCCACACTCATCATAGCAC+CGG | 0.591401 | 4.3:-5237902 | None:intergenic |
GGCAATAACTCATCAAGACC+TGG | 0.595098 | 4.3:+5237988 | MS.gene55751:CDS |
GAAGATCCTTTGCATGCATG+GGG | 0.598475 | 4.3:+5237029 | MS.gene55751:CDS |
TATCAGGATCAGCCCACAGA+AGG | 0.599205 | 4.3:-5237137 | None:intergenic |
CTGAAGTCTTCCGATAAGAA+GGG | 0.604771 | 4.3:+5237952 | MS.gene55751:CDS |
GATAAAGATCTTGAGGGATG+GGG | 0.613478 | 4.3:+5237156 | MS.gene55751:CDS |
ATAAGTAATTTGCTTCAGGT+GGG | 0.616465 | 4.3:-5236771 | None:intergenic |
GGATGGGGAGAAAATGATCG+AGG | 0.631648 | 4.3:+5237171 | MS.gene55751:CDS |
AAGCTTGTATCAGCGAAGAA+CGG | 0.636419 | 4.3:+5235418 | MS.gene55751:CDS |
GTTTCTACGATGAGTGCAAG+AGG | 0.643121 | 4.3:+5236932 | MS.gene55751:CDS |
AAGCTGACGAATATCAGCCT+CGG | 0.647938 | 4.3:-5235467 | None:intergenic |
ACCATAAATACGATTGATGG+AGG | 0.650130 | 4.3:-5236911 | None:intergenic |
GAGAACTTCTTTCTTCTCAG+GGG | 0.674269 | 4.3:+5236874 | MS.gene55751:CDS |
TGCCGGTGCTATGATGAGTG+TGG | 0.686901 | 4.3:+5237900 | MS.gene55751:CDS |
TTAAGGCTGTTCGAATACGG+GGG | 0.692495 | 4.3:+5236745 | MS.gene55751:CDS |
TCTACGATGAGTGCAAGAGG+AGG | 0.698302 | 4.3:+5236935 | MS.gene55751:CDS |
TTCTCTGCACCAAATTACTG+TGG | 0.705308 | 4.3:+5237865 | MS.gene55751:CDS |
AAGATCCTTTGCATGCATGG+GGG | 0.732102 | 4.3:+5237030 | MS.gene55751:CDS |
GAAGCAAGTTCATCTTACCG+AGG | 0.743441 | 4.3:+5235450 | MS.gene55751:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAATTTTAATTTTTAATT+GGG | + | chr4.3:5235705-5235724 | MS.gene55751:intron | 0.0% |
!!! | TTTTAATTTTAATTTTTAAT+TGG | + | chr4.3:5235704-5235723 | MS.gene55751:intron | 0.0% |
!! | TAGAATTTATGTAATTGAAT+TGG | + | chr4.3:5235659-5235678 | MS.gene55751:intron | 15.0% |
!! | TATTTATAATGATAATTGAG+CGG | + | chr4.3:5237445-5237464 | MS.gene55751:intron | 15.0% |
!!! | AACTCATAGATTTTAATTTT+AGG | + | chr4.3:5236311-5236330 | MS.gene55751:intron | 15.0% |
!!! | ACTCATAGATTTTAATTTTA+GGG | + | chr4.3:5236312-5236331 | MS.gene55751:intron | 15.0% |
!!! | ATGTTTCCTTTTAATATTTT+GGG | + | chr4.3:5237778-5237797 | MS.gene55751:intron | 15.0% |
!!! | CATTCATATTTTTAACAAAA+TGG | - | chr4.3:5236527-5236546 | None:intergenic | 15.0% |
!! | AAACTTATTGTATATACAGA+CGG | - | chr4.3:5237364-5237383 | None:intergenic | 20.0% |
!! | ATAAATCTATACACAAAATC+AGG | - | chr4.3:5238238-5238257 | None:intergenic | 20.0% |
!! | CTATTTATAAATTATAGCCA+AGG | - | chr4.3:5237339-5237358 | None:intergenic | 20.0% |
!! | TGCATATAAAATCAAATACA+AGG | + | chr4.3:5236852-5236871 | MS.gene55751:CDS | 20.0% |
!!! | CATTATATTTTTACCTTATG+AGG | - | chr4.3:5238021-5238040 | None:intergenic | 20.0% |
!!! | GATGTTTCCTTTTAATATTT+TGG | + | chr4.3:5237777-5237796 | MS.gene55751:intron | 20.0% |
!!! | TCATACACTTTTTTAATGAA+TGG | + | chr4.3:5235823-5235842 | MS.gene55751:intron | 20.0% |
!!! | TGTATTTGATTTTATATGCA+AGG | - | chr4.3:5236852-5236871 | None:intergenic | 20.0% |
!!! | TGTTTCCTTTTAATATTTTG+GGG | + | chr4.3:5237779-5237798 | MS.gene55751:intron | 20.0% |
!!! | TTTTAATTTTTAATTGGGGT+CGG | + | chr4.3:5235710-5235729 | MS.gene55751:intron | 20.0% |
! | AAAAAGAGGTAGTTAAACAA+AGG | - | chr4.3:5237634-5237653 | None:intergenic | 25.0% |
! | GATTCTATGTATATGTGTAT+GGG | + | chr4.3:5238077-5238096 | MS.gene55751:intron | 25.0% |
! | TAACAAAATGGAAAAGCTTT+AGG | - | chr4.3:5236515-5236534 | None:intergenic | 25.0% |
! | TGATTCTATGTATATGTGTA+TGG | + | chr4.3:5238076-5238095 | MS.gene55751:intron | 25.0% |
! | TGATTGCTTTAATTGTTTAC+CGG | + | chr4.3:5236987-5237006 | MS.gene55751:CDS | 25.0% |
! | TTAAAAACTTGGATCAGATA+CGG | + | chr4.3:5237067-5237086 | MS.gene55751:CDS | 25.0% |
! | TTATAAATTATAGCCAAGGA+TGG | - | chr4.3:5237335-5237354 | None:intergenic | 25.0% |
! | TTATGTAATTGAATTGGTAG+TGG | + | chr4.3:5235665-5235684 | MS.gene55751:intron | 25.0% |
!! | GAAGCAAATTACTTATTTCT+TGG | + | chr4.3:5236778-5236797 | MS.gene55751:CDS | 25.0% |
!! | TTGGGTTTATCTCAAATTTT+TGG | + | chr4.3:5236209-5236228 | MS.gene55751:intron | 25.0% |
!!! | AAGATACCACAAATTTTGAT+AGG | - | chr4.3:5235550-5235569 | None:intergenic | 25.0% |
!!! | AGAAATAAGTAATTTGCTTC+AGG | - | chr4.3:5236778-5236797 | None:intergenic | 25.0% |
!!! | GTTTCCTTTTAATATTTTGG+GGG | + | chr4.3:5237780-5237799 | MS.gene55751:intron | 25.0% |
!!! | TATATTTTTACCTTATGAGG+TGG | - | chr4.3:5238018-5238037 | None:intergenic | 25.0% |
!!! | TTGAGTTGAATTTGTTTTTG+TGG | + | chr4.3:5235887-5235906 | MS.gene55751:intron | 25.0% |
!!! | TTGTTTTTGTGGTTTTTGAT+AGG | + | chr4.3:5235898-5235917 | MS.gene55751:intron | 25.0% |
!!! | TTTAATTTTTAATTGGGGTC+GGG | + | chr4.3:5235711-5235730 | MS.gene55751:intron | 25.0% |
AAACATCAGATCAGATTTAC+TGG | - | chr4.3:5237764-5237783 | None:intergenic | 30.0% | |
AGGTGTTTCATTTACATTTG+GGG | + | chr4.3:5237191-5237210 | MS.gene55751:CDS | 30.0% | |
AGTAAAGGATATGACAAAGT+TGG | + | chr4.3:5237501-5237520 | MS.gene55751:intron | 30.0% | |
ATTGAAATTAACCAAGCTAC+AGG | - | chr4.3:5237288-5237307 | None:intergenic | 30.0% | |
CATGTTATCAACTTATCATC+AGG | + | chr4.3:5236481-5236500 | MS.gene55751:intron | 30.0% | |
GAAACCATAAATACGATTGA+TGG | - | chr4.3:5236917-5236936 | None:intergenic | 30.0% | |
GTAAAGGATATGACAAAGTT+GGG | + | chr4.3:5237502-5237521 | MS.gene55751:intron | 30.0% | |
TTATATATTTGTCTGTGTGC+TGG | + | chr4.3:5237690-5237709 | MS.gene55751:intron | 30.0% | |
TTATTTGTGTTTCCACATTG+CGG | + | chr4.3:5235992-5236011 | MS.gene55751:intron | 30.0% | |
TTCTCCTGAACTTAAAAACT+TGG | + | chr4.3:5237056-5237075 | MS.gene55751:CDS | 30.0% | |
TTGAAATTAACCAAGCTACA+GGG | - | chr4.3:5237287-5237306 | None:intergenic | 30.0% | |
! | AAGTTTCATGTCACTTAAGT+TGG | + | chr4.3:5238190-5238209 | MS.gene55751:intron | 30.0% |
! | GAGGTGTTTCATTTACATTT+GGG | + | chr4.3:5237190-5237209 | MS.gene55751:CDS | 30.0% |
! | GGTTTAAACAATTTGTTTGC+AGG | + | chr4.3:5236694-5236713 | MS.gene55751:intron | 30.0% |
! | GTTTTCTTCAGACAATTAAG+TGG | + | chr4.3:5235929-5235948 | MS.gene55751:intron | 30.0% |
! | TGGTTTTTGATAGGATTGTT+TGG | + | chr4.3:5235907-5235926 | MS.gene55751:intron | 30.0% |
! | TTTTGCACATACTATGGTTT+TGG | + | chr4.3:5236418-5236437 | MS.gene55751:intron | 30.0% |
!! | AATAAGTAATTTGCTTCAGG+TGG | - | chr4.3:5236775-5236794 | None:intergenic | 30.0% |
!! | ATAAGTAATTTGCTTCAGGT+GGG | - | chr4.3:5236774-5236793 | None:intergenic | 30.0% |
!!! | CACTTTTTTAATGAATGGCT+AGG | + | chr4.3:5235828-5235847 | MS.gene55751:intron | 30.0% |
!!! | TGATCCAAGTTTTTAAGTTC+AGG | - | chr4.3:5237063-5237082 | None:intergenic | 30.0% |
!!! | TTTAGCTTTTGCACATACTA+TGG | + | chr4.3:5236412-5236431 | MS.gene55751:intron | 30.0% |
!!! | TTTTAATTTTAGGGATGCAG+TGG | + | chr4.3:5236321-5236340 | MS.gene55751:intron | 30.0% |
AAAAGCAAAATAGGACCTGA+AGG | - | chr4.3:5236646-5236665 | None:intergenic | 35.0% | |
ACACACAACATAATGAGACA+AGG | - | chr4.3:5236616-5236635 | None:intergenic | 35.0% | |
ACAGTGGTCAAAAGCAAAAT+AGG | - | chr4.3:5236655-5236674 | None:intergenic | 35.0% | |
ACCATAAATACGATTGATGG+AGG | - | chr4.3:5236914-5236933 | None:intergenic | 35.0% | |
ACTAAACTGATTGACAACCA+AGG | - | chr4.3:5236092-5236111 | None:intergenic | 35.0% | |
CTAAACTGATTGACAACCAA+GGG | - | chr4.3:5236091-5236110 | None:intergenic | 35.0% | |
GAAGCTCCTATCAAAATTTG+TGG | + | chr4.3:5235541-5235560 | MS.gene55751:CDS | 35.0% | |
GAGAAAGACTACATGAGTAA+AGG | + | chr4.3:5237486-5237505 | MS.gene55751:intron | 35.0% | |
GATCCTGATAAAGATCTTGA+GGG | + | chr4.3:5237150-5237169 | MS.gene55751:CDS | 35.0% | |
GTCATCTGTAAGTGTTAAAC+TGG | + | chr4.3:5236673-5236692 | MS.gene55751:intron | 35.0% | |
TAAACTGATTGACAACCAAG+GGG | - | chr4.3:5236090-5236109 | None:intergenic | 35.0% | |
TCAAACTCACCACAGTAATT+TGG | - | chr4.3:5237877-5237896 | None:intergenic | 35.0% | |
TGATAAAGATCTTGAGGGAT+GGG | + | chr4.3:5237155-5237174 | MS.gene55751:CDS | 35.0% | |
TGATCCTGATAAAGATCTTG+AGG | + | chr4.3:5237149-5237168 | MS.gene55751:CDS | 35.0% | |
TTAACACTTACAGATGACAG+TGG | - | chr4.3:5236671-5236690 | None:intergenic | 35.0% | |
TTCTTTCTTCTGTGAATTCC+CGG | + | chr4.3:5236131-5236150 | MS.gene55751:intron | 35.0% | |
! | CGAGGTGTTTCATTTACATT+TGG | + | chr4.3:5237189-5237208 | MS.gene55751:CDS | 35.0% |
! | GCTTCAAGTTCAAGAAGATT+AGG | - | chr4.3:5235526-5235545 | None:intergenic | 35.0% |
! | TTTAATTAAAGCGGCACTGA+GGG | + | chr4.3:5235749-5235768 | MS.gene55751:intron | 35.0% |
!! | AGTAAGAGTGTGTTTGGTTT+TGG | - | chr4.3:5236455-5236474 | None:intergenic | 35.0% |
!! | CTCTAAAGTAAGAGTGTGTT+TGG | - | chr4.3:5236461-5236480 | None:intergenic | 35.0% |
!! | TGCATGTTTGATTTGACGTT+TGG | + | chr4.3:5236351-5236370 | MS.gene55751:intron | 35.0% |
!! | TTTTAATTAAAGCGGCACTG+AGG | + | chr4.3:5235748-5235767 | MS.gene55751:intron | 35.0% |
!!! | CTTTTAAGGCTGTTCGAATA+CGG | + | chr4.3:5236742-5236761 | MS.gene55751:CDS | 35.0% |
!!! | TTTTAAGGCTGTTCGAATAC+GGG | + | chr4.3:5236743-5236762 | MS.gene55751:CDS | 35.0% |
AAAAGCCCACTTATCTAACG+TGG | + | chr4.3:5236287-5236306 | MS.gene55751:intron | 40.0% | |
AAACCCAAAAACACACCACA+AGG | - | chr4.3:5236197-5236216 | None:intergenic | 40.0% | |
AAAGTCCCAGATCATGGTTT+GGG | + | chr4.3:5236374-5236393 | MS.gene55751:intron | 40.0% | |
AAGAAGGGCAAAGTTGGATT+TGG | + | chr4.3:5237967-5237986 | MS.gene55751:CDS | 40.0% | |
AAGCTTGTATCAGCGAAGAA+CGG | + | chr4.3:5235418-5235437 | MS.gene55751:CDS | 40.0% | |
ACTGAAGTCTTCCGATAAGA+AGG | + | chr4.3:5237951-5237970 | MS.gene55751:CDS | 40.0% | |
AGAAGATCCTTTGCATGCAT+GGG | + | chr4.3:5237028-5237047 | MS.gene55751:CDS | 40.0% | |
AGACAAGGCAATCAAACTAG+GGG | - | chr4.3:5236601-5236620 | None:intergenic | 40.0% | |
AGGAGAACTTCTTTCTTCTC+AGG | + | chr4.3:5236872-5236891 | MS.gene55751:CDS | 40.0% | |
AGTATCTCTTCCTGTTGAGA+TGG | + | chr4.3:5236060-5236079 | MS.gene55751:intron | 40.0% | |
AGTTGCCACGTTAGATAAGT+GGG | - | chr4.3:5236295-5236314 | None:intergenic | 40.0% | |
ATCTCAACAGGAAGAGATAC+TGG | - | chr4.3:5236061-5236080 | None:intergenic | 40.0% | |
ATGCACAACACGACTGAATA+TGG | + | chr4.3:5237581-5237600 | MS.gene55751:intron | 40.0% | |
ATTATAGCCAAGGATGGCAT+TGG | - | chr4.3:5237329-5237348 | None:intergenic | 40.0% | |
CATCCCTCAAGATCTTTATC+AGG | - | chr4.3:5237156-5237175 | None:intergenic | 40.0% | |
CATGATCTGGCACATCAATA+GGG | - | chr4.3:5237104-5237123 | None:intergenic | 40.0% | |
CGTATTCGAACAGCCTTAAA+AGG | - | chr4.3:5236744-5236763 | None:intergenic | 40.0% | |
CTGAAGTCTTCCGATAAGAA+GGG | + | chr4.3:5237952-5237971 | MS.gene55751:CDS | 40.0% | |
CTGATAAAGATCTTGAGGGA+TGG | + | chr4.3:5237154-5237173 | MS.gene55751:CDS | 40.0% | |
CTTGGAGATTATGTTGATCG+TGG | + | chr4.3:5236796-5236815 | MS.gene55751:CDS | 40.0% | |
GAGAACTTCTTTCTTCTCAG+GGG | + | chr4.3:5236874-5236893 | MS.gene55751:CDS | 40.0% | |
GAGACAAGGCAATCAAACTA+GGG | - | chr4.3:5236602-5236621 | None:intergenic | 40.0% | |
GATAAAGATCTTGAGGGATG+GGG | + | chr4.3:5237156-5237175 | MS.gene55751:CDS | 40.0% | |
GCAGCCCCCAAAATATTAAA+AGG | - | chr4.3:5237787-5237806 | None:intergenic | 40.0% | |
GCCTCCATCAATCGTATTTA+TGG | + | chr4.3:5236910-5236929 | MS.gene55751:CDS | 40.0% | |
GCCTTAAAAGGTCTGAAAAC+TGG | - | chr4.3:5236732-5236751 | None:intergenic | 40.0% | |
GGAGAACTTCTTTCTTCTCA+GGG | + | chr4.3:5236873-5236892 | MS.gene55751:CDS | 40.0% | |
GTATCTCTTCCTGTTGAGAT+GGG | + | chr4.3:5236061-5236080 | MS.gene55751:intron | 40.0% | |
TATCGGAAGACTTCAGTATC+TGG | - | chr4.3:5237948-5237967 | None:intergenic | 40.0% | |
TCCAACTTTGCCCTTCTTAT+CGG | - | chr4.3:5237965-5237984 | None:intergenic | 40.0% | |
TGAGACAAGGCAATCAAACT+AGG | - | chr4.3:5236603-5236622 | None:intergenic | 40.0% | |
TGCTTCTTTCGACACTTCTT+TGG | + | chr4.3:5235860-5235879 | MS.gene55751:intron | 40.0% | |
TTCCGTAAACCAGATACTCA+AGG | - | chr4.3:5236562-5236581 | None:intergenic | 40.0% | |
TTCTCTGCACCAAATTACTG+TGG | + | chr4.3:5237865-5237884 | MS.gene55751:CDS | 40.0% | |
TTGTGTGTGTATCTTCCTTC+AGG | + | chr4.3:5236628-5236647 | MS.gene55751:intron | 40.0% | |
! | ATTGGGATTTTGCTTCGCTT+AGG | + | chr4.3:5237716-5237735 | MS.gene55751:intron | 40.0% |
! | ATTTACATTTGGGGCTGACA+AGG | + | chr4.3:5237200-5237219 | MS.gene55751:CDS | 40.0% |
! | CACCTTGAGTATCTGGTTTA+CGG | + | chr4.3:5236557-5236576 | MS.gene55751:intron | 40.0% |
! | GCCAGTTTTCAGACCTTTTA+AGG | + | chr4.3:5236728-5236747 | MS.gene55751:CDS | 40.0% |
! | TCAGCTTTGTACTTCTGCTA+AGG | + | chr4.3:5235483-5235502 | MS.gene55751:CDS | 40.0% |
! | TTGGGATTTTGCTTCGCTTA+GGG | + | chr4.3:5237717-5237736 | MS.gene55751:intron | 40.0% |
! | TTTAAGGCTGTTCGAATACG+GGG | + | chr4.3:5236744-5236763 | MS.gene55751:CDS | 40.0% |
! | TTTTGCCCAAACCATGATCT+GGG | - | chr4.3:5236382-5236401 | None:intergenic | 40.0% |
!! | TCAGTTTAGTTTGAAACCCC+TGG | + | chr4.3:5236102-5236121 | MS.gene55751:intron | 40.0% |
!! | TGTGGTGAGTTTGATAATGC+CGG | + | chr4.3:5237883-5237902 | MS.gene55751:CDS | 40.0% |
!!! | GTGTGTTTGGTTTTGGCATT+CGG | - | chr4.3:5236448-5236467 | None:intergenic | 40.0% |
!!! | GTTTTTTGCCAAACGTAAGC+TGG | + | chr4.3:5237834-5237853 | MS.gene55751:CDS | 40.0% |
AAAGGTCTGAAAACTGGCCA+TGG | - | chr4.3:5236726-5236745 | None:intergenic | 45.0% | |
AAGATCCTTTGCATGCATGG+GGG | + | chr4.3:5237030-5237049 | MS.gene55751:CDS | 45.0% | |
AAGCTACAGGGTTCATTACC+TGG | - | chr4.3:5237275-5237294 | None:intergenic | 45.0% | |
AAGCTGACGAATATCAGCCT+CGG | - | chr4.3:5235470-5235489 | None:intergenic | 45.0% | |
AATTGAGCGGTGAGACTTGA+AGG | + | chr4.3:5237458-5237477 | MS.gene55751:intron | 45.0% | |
ACAAGGCAATCAAACTAGGG+GGG | - | chr4.3:5236599-5236618 | None:intergenic | 45.0% | |
AGAAGAAAGAAGCTCGACCA+GGG | - | chr4.3:5236122-5236141 | None:intergenic | 45.0% | |
AGGTAATGAACCCTGTAGCT+TGG | + | chr4.3:5237274-5237293 | MS.gene55751:intron | 45.0% | |
AGTGCTGCACAAATGTCAAC+AGG | - | chr4.3:5236235-5236254 | None:intergenic | 45.0% | |
ATCCACACTCATCATAGCAC+CGG | - | chr4.3:5237905-5237924 | None:intergenic | 45.0% | |
CAGTATGCTCCTGACATAAG+GGG | - | chr4.3:5236174-5236193 | None:intergenic | 45.0% | |
CCATGATCTGGCACATCAAT+AGG | - | chr4.3:5237105-5237124 | None:intergenic | 45.0% | |
CCTATTGATGTGCCAGATCA+TGG | + | chr4.3:5237102-5237121 | MS.gene55751:CDS | 45.0% | |
CTGAGGCTGTATGAGATAGA+AGG | + | chr4.3:5236033-5236052 | MS.gene55751:intron | 45.0% | |
CTTCTGTGAATTCCCGGTTT+AGG | + | chr4.3:5236137-5236156 | MS.gene55751:intron | 45.0% | |
GAAAGTCCCAGATCATGGTT+TGG | + | chr4.3:5236373-5236392 | MS.gene55751:intron | 45.0% | |
GAAGATCCTTTGCATGCATG+GGG | + | chr4.3:5237029-5237048 | MS.gene55751:CDS | 45.0% | |
GAAGCAAGTTCATCTTACCG+AGG | + | chr4.3:5235450-5235469 | MS.gene55751:CDS | 45.0% | |
GACAAGGCAATCAAACTAGG+GGG | - | chr4.3:5236600-5236619 | None:intergenic | 45.0% | |
GAGAAGATCCTTTGCATGCA+TGG | + | chr4.3:5237027-5237046 | MS.gene55751:CDS | 45.0% | |
GAGTTGCCACGTTAGATAAG+TGG | - | chr4.3:5236296-5236315 | None:intergenic | 45.0% | |
GCAGTATGCTCCTGACATAA+GGG | - | chr4.3:5236175-5236194 | None:intergenic | 45.0% | |
GGCAATAACTCATCAAGACC+TGG | + | chr4.3:5237988-5238007 | MS.gene55751:CDS | 45.0% | |
GTTGACATTTGTGCAGCACT+CGG | + | chr4.3:5236235-5236254 | MS.gene55751:intron | 45.0% | |
GTTTCTACGATGAGTGCAAG+AGG | + | chr4.3:5236932-5236951 | MS.gene55751:CDS | 45.0% | |
GTTTGGAAAGTCCCAGATCA+TGG | + | chr4.3:5236368-5236387 | MS.gene55751:intron | 45.0% | |
TACAGTCACCAGCTTACGTT+TGG | - | chr4.3:5237845-5237864 | None:intergenic | 45.0% | |
TCCGATAAGAAGGGCAAAGT+TGG | + | chr4.3:5237961-5237980 | MS.gene55751:CDS | 45.0% | |
TCTGATATGTAGAGCTCACC+AGG | + | chr4.3:5237254-5237273 | MS.gene55751:CDS | 45.0% | |
TGATTGACCAATGCCATCCT+TGG | + | chr4.3:5237319-5237338 | MS.gene55751:intron | 45.0% | |
TGTGCAGCACTCGGTTTAAA+TGG | + | chr4.3:5236244-5236263 | MS.gene55751:intron | 45.0% | |
TGTGTTTCCACATTGCGGAT+GGG | + | chr4.3:5235997-5236016 | MS.gene55751:intron | 45.0% | |
TTAAGGCTGTTCGAATACGG+GGG | + | chr4.3:5236745-5236764 | MS.gene55751:CDS | 45.0% | |
TTGTGTTTCCACATTGCGGA+TGG | + | chr4.3:5235996-5236015 | MS.gene55751:intron | 45.0% | |
TTGTTTGCAGGAGATGTCCA+TGG | + | chr4.3:5236706-5236725 | MS.gene55751:intron | 45.0% | |
! | ACCAGATACTCAAGGTGTCA+AGG | - | chr4.3:5236554-5236573 | None:intergenic | 45.0% |
! | ACTGCCTTGTGGTGTGTTTT+TGG | + | chr4.3:5236190-5236209 | MS.gene55751:intron | 45.0% |
! | CCAGATACTCAAGGTGTCAA+GGG | - | chr4.3:5236553-5236572 | None:intergenic | 45.0% |
! | CTGCCTTGTGGTGTGTTTTT+GGG | + | chr4.3:5236191-5236210 | MS.gene55751:intron | 45.0% |
! | CTTTTGCCCAAACCATGATC+TGG | - | chr4.3:5236383-5236402 | None:intergenic | 45.0% |
! | GGAGGTATAATGTTCGTCTC+TGG | + | chr4.3:5236953-5236972 | MS.gene55751:CDS | 45.0% |
! | TAAGCACATGCTTTGAGCAG+AGG | + | chr4.3:5237422-5237441 | MS.gene55751:intron | 45.0% |
! | TGGGATTTTGCTTCGCTTAG+GGG | + | chr4.3:5237718-5237737 | MS.gene55751:intron | 45.0% |
! | TGTCTGTGTGCTGGTGTATT+GGG | + | chr4.3:5237699-5237718 | MS.gene55751:intron | 45.0% |
! | TTGTCTGTGTGCTGGTGTAT+TGG | + | chr4.3:5237698-5237717 | MS.gene55751:intron | 45.0% |
!! | AATTAAAAAAAAAAAAAAAG+AGG | - | chr4.3:5237648-5237667 | None:intergenic | 5.0% |
!!! | TTAATTTTAATTTTTAATTG+GGG | + | chr4.3:5235706-5235725 | MS.gene55751:intron | 5.0% |
!!! | TTTTTTTTTTTTAATTAAAG+CGG | + | chr4.3:5235740-5235759 | MS.gene55751:intron | 5.0% |
!!! | TTTTTTTTTTTTTTTAATTG+CGG | + | chr4.3:5237649-5237668 | MS.gene55751:intron | 5.0% |
AAAGTCCCCCATGCATGCAA+AGG | - | chr4.3:5237038-5237057 | None:intergenic | 50.0% | |
AAGGGGTTTCCCATCTCAAC+AGG | - | chr4.3:5236073-5236092 | None:intergenic | 50.0% | |
ACCTGGAACTCCACCTCATA+AGG | + | chr4.3:5238005-5238024 | MS.gene55751:CDS | 50.0% | |
ACCTTATGAGGTGGAGTTCC+AGG | - | chr4.3:5238009-5238028 | None:intergenic | 50.0% | |
CAGAAGAAAGAAGCTCGACC+AGG | - | chr4.3:5236123-5236142 | None:intergenic | 50.0% | |
CCCTTGACACCTTGAGTATC+TGG | + | chr4.3:5236550-5236569 | MS.gene55751:intron | 50.0% | |
CTGTGAATTCCCGGTTTAGG+TGG | + | chr4.3:5236140-5236159 | MS.gene55751:intron | 50.0% | |
GAAGAAAGAAGCTCGACCAG+GGG | - | chr4.3:5236121-5236140 | None:intergenic | 50.0% | |
GCAATCAAACTAGGGGGGAA+GGG | - | chr4.3:5236594-5236613 | None:intergenic | 50.0% | |
GGATGGGGAGAAAATGATCG+AGG | + | chr4.3:5237171-5237190 | MS.gene55751:CDS | 50.0% | |
GGCAGTATGCTCCTGACATA+AGG | - | chr4.3:5236176-5236195 | None:intergenic | 50.0% | |
GTGTTTCCACATTGCGGATG+GGG | + | chr4.3:5235998-5236017 | MS.gene55751:intron | 50.0% | |
TATCAGGATCAGCCCACAGA+AGG | - | chr4.3:5237140-5237159 | None:intergenic | 50.0% | |
TCCCGGTTTAGGTGGTATCT+GGG | + | chr4.3:5236148-5236167 | MS.gene55751:intron | 50.0% | |
TCGTCTACTAGAGCAGCAAC+CGG | - | chr4.3:5237009-5237028 | None:intergenic | 50.0% | |
TCTACGATGAGTGCAAGAGG+AGG | + | chr4.3:5236935-5236954 | MS.gene55751:CDS | 50.0% | |
TGGGGGGTTATAATGCACTG+AGG | + | chr4.3:5236016-5236035 | MS.gene55751:intron | 50.0% | |
TGTTGAGATGGGAAACCCCT+TGG | + | chr4.3:5236072-5236091 | MS.gene55751:intron | 50.0% | |
TGTTTCCACATTGCGGATGG+GGG | + | chr4.3:5235999-5236018 | MS.gene55751:intron | 50.0% | |
TTCCCGGTTTAGGTGGTATC+TGG | + | chr4.3:5236147-5236166 | MS.gene55751:intron | 50.0% | |
! | GATTGATGGAGGCGCATTCA+TGG | - | chr4.3:5236903-5236922 | None:intergenic | 50.0% |
! | GCGTCTCAGGTTGTAGAAGA+TGG | + | chr4.3:5237805-5237824 | MS.gene55751:intron | 50.0% |
ATAACCCCCCATCCGCAATG+TGG | - | chr4.3:5236007-5236026 | None:intergenic | 55.0% | |
CCTTCTCTGCGACCTTCTGT+GGG | + | chr4.3:5237125-5237144 | MS.gene55751:CDS | 55.0% | |
GCCCAGATACCACCTAAACC+GGG | - | chr4.3:5236152-5236171 | None:intergenic | 55.0% | |
GGCAATCAAACTAGGGGGGA+AGG | - | chr4.3:5236595-5236614 | None:intergenic | 55.0% | |
GGCCCAGATACCACCTAAAC+CGG | - | chr4.3:5236153-5236172 | None:intergenic | 55.0% | |
GTATCTGGGCCCCTTATGTC+AGG | + | chr4.3:5236162-5236181 | MS.gene55751:intron | 55.0% | |
GTTTCCACATTGCGGATGGG+GGG | + | chr4.3:5236000-5236019 | MS.gene55751:intron | 55.0% | |
TCGCAGAGAAGGCCATGATC+TGG | - | chr4.3:5237117-5237136 | None:intergenic | 55.0% | |
! | GTCAGGAGCATACTGCCTTG+TGG | + | chr4.3:5236179-5236198 | MS.gene55751:intron | 55.0% |
!! | TATTTTGGGGGCTGCGTCTC+AGG | + | chr4.3:5237792-5237811 | MS.gene55751:intron | 55.0% |
!! | TGCCGGTGCTATGATGAGTG+TGG | + | chr4.3:5237900-5237919 | MS.gene55751:CDS | 55.0% |
CCCACAGAAGGTCGCAGAGA+AGG | - | chr4.3:5237128-5237147 | None:intergenic | 60.0% | |
GCCTTCTCTGCGACCTTCTG+TGG | + | chr4.3:5237124-5237143 | MS.gene55751:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 5235385 | 5238276 | 5235385 | ID=MS.gene55751 |
chr4.3 | mRNA | 5235385 | 5238276 | 5235385 | ID=MS.gene55751.t1;Parent=MS.gene55751 |
chr4.3 | exon | 5235385 | 5235562 | 5235385 | ID=MS.gene55751.t1.exon1;Parent=MS.gene55751.t1 |
chr4.3 | CDS | 5235385 | 5235562 | 5235385 | ID=cds.MS.gene55751.t1;Parent=MS.gene55751.t1 |
chr4.3 | exon | 5236716 | 5237275 | 5236716 | ID=MS.gene55751.t1.exon2;Parent=MS.gene55751.t1 |
chr4.3 | CDS | 5236716 | 5237275 | 5236716 | ID=cds.MS.gene55751.t1;Parent=MS.gene55751.t1 |
chr4.3 | exon | 5237814 | 5238026 | 5237814 | ID=MS.gene55751.t1.exon3;Parent=MS.gene55751.t1 |
chr4.3 | CDS | 5237814 | 5238026 | 5237814 | ID=cds.MS.gene55751.t1;Parent=MS.gene55751.t1 |
chr4.3 | exon | 5238271 | 5238276 | 5238271 | ID=MS.gene55751.t1.exon4;Parent=MS.gene55751.t1 |
chr4.3 | CDS | 5238271 | 5238276 | 5238271 | ID=cds.MS.gene55751.t1;Parent=MS.gene55751.t1 |
Gene Sequence |
Protein sequence |