Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56546.t1 | XP_024638446.1 | 96.1 | 305 | 12 | 0 | 1 | 305 | 1 | 305 | 4.20E-155 | 557.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56546.t1 | A0A072UP09 | 96.1 | 305 | 12 | 0 | 1 | 305 | 1 | 305 | 3.0e-155 | 557.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene56546 | 0.819213 | 1.31E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene56546 | 0.801159 | 1.03E-48 | -1.69E-46 |
| MS.gene049424 | MS.gene56546 | 0.836808 | 7.53E-57 | -1.69E-46 |
| MS.gene050642 | MS.gene56546 | 0.801569 | 8.47E-49 | -1.69E-46 |
| MS.gene050987 | MS.gene56546 | 0.852861 | 3.50E-61 | -1.69E-46 |
| MS.gene051983 | MS.gene56546 | 0.825658 | 4.16E-54 | -1.69E-46 |
| MS.gene052176 | MS.gene56546 | 0.833509 | 5.12E-56 | -1.69E-46 |
| MS.gene052309 | MS.gene56546 | -0.867577 | 1.24E-65 | -1.69E-46 |
| MS.gene052426 | MS.gene56546 | 0.810415 | 1.17E-50 | -1.69E-46 |
| MS.gene052965 | MS.gene56546 | -0.804192 | 2.43E-49 | -1.69E-46 |
| MS.gene053188 | MS.gene56546 | 0.819403 | 1.18E-52 | -1.69E-46 |
| MS.gene053216 | MS.gene56546 | 0.845454 | 4.02E-59 | -1.69E-46 |
| MS.gene054537 | MS.gene56546 | 0.832056 | 1.18E-55 | -1.69E-46 |
| MS.gene054930 | MS.gene56546 | 0.865625 | 5.16E-65 | -1.69E-46 |
| MS.gene05510 | MS.gene56546 | 0.809345 | 1.98E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene56546 | 0.813378 | 2.64E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene56546 | 0.818224 | 2.19E-52 | -1.69E-46 |
| MS.gene057079 | MS.gene56546 | 0.820046 | 8.44E-53 | -1.69E-46 |
| MS.gene05761 | MS.gene56546 | 0.812494 | 4.12E-51 | -1.69E-46 |
| MS.gene05795 | MS.gene56546 | 0.821121 | 4.78E-53 | -1.69E-46 |
| MS.gene058142 | MS.gene56546 | 0.810004 | 1.43E-50 | -1.69E-46 |
| MS.gene058200 | MS.gene56546 | 0.801518 | 8.67E-49 | -1.69E-46 |
| MS.gene059710 | MS.gene56546 | 0.817646 | 2.96E-52 | -1.69E-46 |
| MS.gene059899 | MS.gene56546 | 0.859771 | 3.28E-63 | -1.69E-46 |
| MS.gene060297 | MS.gene56546 | 0.804132 | 2.50E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56546.t1 | MTR_4g081550 | 96.066 | 305 | 12 | 0 | 1 | 305 | 1 | 305 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56546.t1 | AT5G54540 | 34.769 | 325 | 164 | 11 | 1 | 305 | 1 | 297 | 2.94e-34 | 127 |
Find 85 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCTTCACGTCCGCGGTTT+TGG | 0.226260 | 4.4:-30799415 | None:intergenic |
| GCGTCGCTAGGTCAGGCTTC+AGG | 0.268972 | 4.4:+30799310 | MS.gene56546:CDS |
| GCCTCTGCACACGTCGGTTT+CGG | 0.293742 | 4.4:+30799434 | MS.gene56546:CDS |
| ATGACAGCATTCCATATGTT+TGG | 0.317466 | 4.4:-30800479 | None:intergenic |
| GACGCCGATGCCGGCGAGCT+TGG | 0.375606 | 4.4:-30799292 | None:intergenic |
| CGTCGCTAGGTCAGGCTTCA+GGG | 0.385353 | 4.4:+30799311 | MS.gene56546:CDS |
| TGCTGATGGAGGCAGTTTCA+TGG | 0.399854 | 4.4:+30800877 | MS.gene56546:CDS |
| TTTCATGGGATTGGCAGTTA+TGG | 0.406291 | 4.4:+30800925 | MS.gene56546:CDS |
| TGACAGCATTCCATATGTTT+GGG | 0.407069 | 4.4:-30800478 | None:intergenic |
| ATTGGCAGTTATGGTGATAA+TGG | 0.408540 | 4.4:+30800934 | MS.gene56546:CDS |
| AGCCTCAACAAGACAATCCT+TGG | 0.412702 | 4.4:-30800204 | None:intergenic |
| TTCTTCGAATCACAGCTTGC+AGG | 0.414030 | 4.4:+30800524 | MS.gene56546:CDS |
| GCAGCCAAGCTCGCCGGCAT+CGG | 0.414205 | 4.4:+30799288 | MS.gene56546:CDS |
| ATTTGTCTTTCTCAACTGTT+GGG | 0.421154 | 4.4:-30800844 | None:intergenic |
| GATTTGTCTTTCTCAACTGT+TGG | 0.425812 | 4.4:-30800845 | None:intergenic |
| TGAGGCTATTTCAAATCCTT+CGG | 0.427999 | 4.4:+30800220 | MS.gene56546:CDS |
| GGCATCGGCGTCGCTAGGTC+AGG | 0.434066 | 4.4:+30799303 | MS.gene56546:CDS |
| GAAGCTGACAGTTACTGAAA+TGG | 0.440322 | 4.4:+30800787 | MS.gene56546:CDS |
| TTGCTTGTGACCCAAACATA+TGG | 0.441449 | 4.4:+30800468 | MS.gene56546:CDS |
| TTTCGGAGGATTTGAATGAC+TGG | 0.442439 | 4.4:+30799451 | MS.gene56546:CDS |
| GGGAGGAAGTTTCATGGGAT+TGG | 0.442750 | 4.4:+30800916 | MS.gene56546:CDS |
| GCAACTGCAGATTCAACAAA+TGG | 0.455044 | 4.4:+30800659 | MS.gene56546:intron |
| TAGCTCAAGTGTTGAGGCCC+AGG | 0.460395 | 4.4:+30800277 | MS.gene56546:CDS |
| TCGCCGGCATCGGCGTCGCT+AGG | 0.463408 | 4.4:+30799298 | MS.gene56546:CDS |
| ACATTTCCTGACTGAGACTC+AGG | 0.469584 | 4.4:-30800734 | None:intergenic |
| CCTACGCCGAGAATGGTGTT+TGG | 0.473022 | 4.4:+30799516 | MS.gene56546:CDS |
| CGAGACCACTGTTTCTCCGC+TGG | 0.479377 | 4.4:-30799351 | None:intergenic |
| ATCTCATGGTAGTGAAGTCT+TGG | 0.480550 | 4.4:+30800166 | MS.gene56546:CDS |
| TCCCAAGGATTGTCTTGTTG+AGG | 0.484050 | 4.4:+30800202 | MS.gene56546:CDS |
| TCCTCCGCTTCCTTCAACGT+CGG | 0.485697 | 4.4:-30799546 | None:intergenic |
| TATGTTTGGGTCACAAGCAA+TGG | 0.494032 | 4.4:-30800465 | None:intergenic |
| TTCTCAATTTGAGAATTAGC+AGG | 0.502174 | 4.4:-30800140 | None:intergenic |
| TGTCGTGGGAGGAAGTTTCA+TGG | 0.507727 | 4.4:+30800910 | MS.gene56546:CDS |
| TGGAGAGCCTACGCCGAGAA+TGG | 0.509702 | 4.4:+30799509 | MS.gene56546:CDS |
| GGTTCCGTCTCCTTCTCCCA+AGG | 0.509750 | 4.4:+30800187 | MS.gene56546:CDS |
| CAGCGGAGAAACAGTGGTCT+CGG | 0.510466 | 4.4:+30799352 | MS.gene56546:CDS |
| ACCTCTCCAAACACCATTCT+CGG | 0.512931 | 4.4:-30799522 | None:intergenic |
| TGACCTAGCGACGCCGATGC+CGG | 0.514560 | 4.4:-30799301 | None:intergenic |
| AAATCTTCAGCTGATGCTGA+TGG | 0.518948 | 4.4:+30800863 | MS.gene56546:CDS |
| AAGCAACTGAAAAGCGTGAA+TGG | 0.519901 | 4.4:-30800255 | None:intergenic |
| GAAAAGCCTGAGTCTCAGTC+AGG | 0.524090 | 4.4:+30800728 | MS.gene56546:CDS |
| CATAAACAAATCACTTTCAT+CGG | 0.525463 | 4.4:-30799481 | None:intergenic |
| TTCGGAGGATTTGAATGACT+GGG | 0.534180 | 4.4:+30799452 | MS.gene56546:CDS |
| GTTGCTTAGCTCAAGTGTTG+AGG | 0.535470 | 4.4:+30800271 | MS.gene56546:CDS |
| CCCTCGTCGGCGATGAGGCG+CGG | 0.537738 | 4.4:-30799377 | None:intergenic |
| AGGACGGCAGCCAAGCTCGC+CGG | 0.539761 | 4.4:+30799282 | MS.gene56546:CDS |
| GATTGGATAATGGGCGGTGG+CGG | 0.542192 | 4.4:+30799252 | None:intergenic |
| GCCTCAACAAGACAATCCTT+GGG | 0.548704 | 4.4:-30800203 | None:intergenic |
| AAAGCGTGAATGGCATGCTT+AGG | 0.550944 | 4.4:-30800245 | None:intergenic |
| AGTGATTTGTTTATGTCGAG+TGG | 0.551557 | 4.4:+30799489 | MS.gene56546:CDS |
| GGTTCCGACGTTGAAGGAAG+CGG | 0.551831 | 4.4:+30799542 | MS.gene56546:CDS |
| TTTGAGAATTAGCAGGTGAA+AGG | 0.552733 | 4.4:-30800133 | None:intergenic |
| GTCGTGGGAGGAAGTTTCAT+GGG | 0.556777 | 4.4:+30800911 | MS.gene56546:CDS |
| TCGAAGAAACTAGTCACTGC+AGG | 0.567121 | 4.4:-30800509 | None:intergenic |
| ATGGATTATAAGAATGTCGT+GGG | 0.569424 | 4.4:+30800896 | MS.gene56546:CDS |
| CATGGATTATAAGAATGTCG+TGG | 0.578660 | 4.4:+30800895 | MS.gene56546:CDS |
| CAAATTGAGAACTCATCTCA+TGG | 0.582375 | 4.4:+30800152 | MS.gene56546:CDS |
| TGGAGAGGTTCCGACGTTGA+AGG | 0.586309 | 4.4:+30799536 | MS.gene56546:CDS |
| CGGTGGCGGAACGATGAGGA+CGG | 0.587249 | 4.4:+30799266 | MS.gene56546:CDS |
| GAAGGAAGCGGAGGAAGCCA+CGG | 0.589709 | 4.4:+30799554 | MS.gene56546:CDS |
| ACAAGACAATCCTTGGGAGA+AGG | 0.590276 | 4.4:-30800197 | None:intergenic |
| ACCGCGCCTCATCGCCGACG+AGG | 0.591542 | 4.4:+30799376 | MS.gene56546:CDS |
| GTCGCTAGGTCAGGCTTCAG+GGG | 0.594901 | 4.4:+30799312 | MS.gene56546:CDS |
| TCTGCACACGTCGGTTTCGG+AGG | 0.596631 | 4.4:+30799437 | MS.gene56546:CDS |
| CGCGTGCTTCAATTCAGCCG+TGG | 0.599375 | 4.4:-30799571 | None:intergenic |
| CCAAACACCATTCTCGGCGT+AGG | 0.600029 | 4.4:-30799516 | None:intergenic |
| CCGCGCCTCATCGCCGACGA+GGG | 0.606141 | 4.4:+30799377 | MS.gene56546:CDS |
| GTGCAGAGGCTTCACGTCCG+CGG | 0.607881 | 4.4:-30799421 | None:intergenic |
| TCCGAAACCGACGTGTGCAG+AGG | 0.608510 | 4.4:-30799435 | None:intergenic |
| CGTATCCAGCGGAGAAACAG+TGG | 0.608528 | 4.4:+30799346 | MS.gene56546:CDS |
| CAATCCTTGGGAGAAGGAGA+CGG | 0.611104 | 4.4:-30800191 | None:intergenic |
| GCCGAGAATGGTGTTTGGAG+AGG | 0.611441 | 4.4:+30799521 | MS.gene56546:CDS |
| TCTTCAGCTGATGCTGATGG+AGG | 0.613380 | 4.4:+30800866 | MS.gene56546:CDS |
| GTCAGGCTTCAGGGGAACGA+CGG | 0.622061 | 4.4:+30799320 | MS.gene56546:CDS |
| ACTGATTGGATAATGGGCGG+TGG | 0.623434 | 4.4:+30799249 | None:intergenic |
| CCCTGAGATAAAACCCTCGT+CGG | 0.630010 | 4.4:-30799390 | None:intergenic |
| ATGGCATGCTTAGGCACCGA+AGG | 0.637271 | 4.4:-30800236 | None:intergenic |
| TGGGCGGTGGCGGAACGATG+AGG | 0.643041 | 4.4:+30799262 | MS.gene56546:CDS |
| TCCGACGTTGAAGGAAGCGG+AGG | 0.652735 | 4.4:+30799545 | MS.gene56546:CDS |
| TAAAACCCTCGTCGGCGATG+AGG | 0.653238 | 4.4:-30799382 | None:intergenic |
| GATTATAAGAATGTCGTGGG+AGG | 0.659415 | 4.4:+30800899 | MS.gene56546:CDS |
| ATCTCAGGGGACCAAAACCG+CGG | 0.669256 | 4.4:+30799404 | MS.gene56546:CDS |
| GCAACTGATTGGATAATGGG+CGG | 0.691401 | 4.4:+30799246 | None:intergenic |
| CGTGAAGCCTCTGCACACGT+CGG | 0.703926 | 4.4:+30799428 | MS.gene56546:CDS |
| AACGACGGTTACGTATCCAG+CGG | 0.727599 | 4.4:+30799335 | MS.gene56546:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTTATTAGTTTCTTT+TGG | + | chr4.4:30799730-30799749 | MS.gene56546:intron | 10.0% |
| !! | ATCATAAAATATAACTTATC+AGG | - | chr4.4:30800008-30800027 | None:intergenic | 15.0% |
| !! | ATTAAACATCAAAATTGAAA+TGG | - | chr4.4:30799646-30799665 | None:intergenic | 15.0% |
| !!! | TTGATGTTTAATTTTGATTT+AGG | + | chr4.4:30799654-30799673 | MS.gene56546:intron | 15.0% |
| !! | AGATAAAAACACAAAAAAAG+TGG | - | chr4.4:30800594-30800613 | None:intergenic | 20.0% |
| !!! | AGGAAATGTTTTTGATTTTA+TGG | + | chr4.4:30800748-30800767 | MS.gene56546:CDS | 20.0% |
| !!! | GAAAAATCTTATTTTCATGT+CGG | + | chr4.4:30799783-30799802 | MS.gene56546:intron | 20.0% |
| !!! | GAATATGTTTTGAAAGAAAT+TGG | - | chr4.4:30800825-30800844 | None:intergenic | 20.0% |
| !!! | GGAAATGTTTTTGATTTTAT+GGG | + | chr4.4:30800749-30800768 | MS.gene56546:CDS | 20.0% |
| !!! | TTTGGTTGATAATAGTTTTA+GGG | + | chr4.4:30799748-30799767 | MS.gene56546:intron | 20.0% |
| !!! | TTTTGGTTGATAATAGTTTT+AGG | + | chr4.4:30799747-30799766 | MS.gene56546:intron | 20.0% |
| ! | AACAAATCAAAATACTCAGA+TGG | - | chr4.4:30799969-30799988 | None:intergenic | 25.0% |
| ! | ATATATATGCTATTCTTGAC+TGG | + | chr4.4:30799862-30799881 | MS.gene56546:intron | 25.0% |
| ! | ATCTGAATATGTTTATGCTT+GGG | + | chr4.4:30800382-30800401 | MS.gene56546:intron | 25.0% |
| ! | ATTGAATTGTCGATATTATG+TGG | + | chr4.4:30799818-30799837 | MS.gene56546:intron | 25.0% |
| ! | CATAAACAAATCACTTTCAT+CGG | - | chr4.4:30799484-30799503 | None:intergenic | 25.0% |
| ! | GGTTAATTTCTCAGTAAATT+TGG | + | chr4.4:30799920-30799939 | MS.gene56546:intron | 25.0% |
| ! | TACTTATTATGTGTTTATCC+TGG | + | chr4.4:30800039-30800058 | MS.gene56546:intron | 25.0% |
| ! | TATCTGAATATGTTTATGCT+TGG | + | chr4.4:30800381-30800400 | MS.gene56546:intron | 25.0% |
| ! | TCTAATCTAGATACGAAATA+AGG | - | chr4.4:30800310-30800329 | None:intergenic | 25.0% |
| ! | TTGAATTGTCGATATTATGT+GGG | + | chr4.4:30799819-30799838 | MS.gene56546:intron | 25.0% |
| ACGAAATAAGGTATATTACC+TGG | - | chr4.4:30800298-30800317 | None:intergenic | 30.0% | |
| ATATCGACAATTCAATCTGA+AGG | - | chr4.4:30799814-30799833 | None:intergenic | 30.0% | |
| ATTTGTCTTTCTCAACTGTT+GGG | - | chr4.4:30800847-30800866 | None:intergenic | 30.0% | |
| CACAAAAAAAGTGGATACAA+AGG | - | chr4.4:30800585-30800604 | None:intergenic | 30.0% | |
| CGAAATAAGGTATATTACCT+GGG | - | chr4.4:30800297-30800316 | None:intergenic | 30.0% | |
| TTATTATGTGTTTATCCTGG+TGG | + | chr4.4:30800042-30800061 | MS.gene56546:intron | 30.0% | |
| TTCTCAATTTGAGAATTAGC+AGG | - | chr4.4:30800143-30800162 | None:intergenic | 30.0% | |
| ! | ATGGATTATAAGAATGTCGT+GGG | + | chr4.4:30800896-30800915 | MS.gene56546:CDS | 30.0% |
| !! | TGTGTTTTTATCTTTTGTGC+TGG | + | chr4.4:30800601-30800620 | MS.gene56546:intron | 30.0% |
| !!! | TATTCTTGACTGGTTTTGTA+AGG | + | chr4.4:30799872-30799891 | MS.gene56546:intron | 30.0% |
| AAAAGTGGATACAAAGGACA+TGG | - | chr4.4:30800579-30800598 | None:intergenic | 35.0% | |
| ATGACAGCATTCCATATGTT+TGG | - | chr4.4:30800482-30800501 | None:intergenic | 35.0% | |
| ATTGGCAGTTATGGTGATAA+TGG | + | chr4.4:30800934-30800953 | MS.gene56546:CDS | 35.0% | |
| CAAATTGAGAACTCATCTCA+TGG | + | chr4.4:30800152-30800171 | MS.gene56546:CDS | 35.0% | |
| CTGAGAAATTAACCATCCAA+TGG | - | chr4.4:30799914-30799933 | None:intergenic | 35.0% | |
| GATTTGTCTTTCTCAACTGT+TGG | - | chr4.4:30800848-30800867 | None:intergenic | 35.0% | |
| TGACAGCATTCCATATGTTT+GGG | - | chr4.4:30800481-30800500 | None:intergenic | 35.0% | |
| TGTAGAAACTCCTGAAAAAG+AGG | + | chr4.4:30800706-30800725 | MS.gene56546:CDS | 35.0% | |
| TTGAGTTTGTCTTAGTCCAT+TGG | + | chr4.4:30799895-30799914 | MS.gene56546:intron | 35.0% | |
| TTTGAGAATTAGCAGGTGAA+AGG | - | chr4.4:30800136-30800155 | None:intergenic | 35.0% | |
| ! | ATAAGAGACTGGTTGGATAA+TGG | - | chr4.4:30800553-30800572 | None:intergenic | 35.0% |
| ! | CATGGATTATAAGAATGTCG+TGG | + | chr4.4:30800895-30800914 | MS.gene56546:CDS | 35.0% |
| ! | GCTGGATTTTCATGCAAATT+GGG | + | chr4.4:30800619-30800638 | MS.gene56546:intron | 35.0% |
| ! | TGAGGCTATTTCAAATCCTT+CGG | + | chr4.4:30800220-30800239 | MS.gene56546:CDS | 35.0% |
| ! | TGCTGGATTTTCATGCAAAT+TGG | + | chr4.4:30800618-30800637 | MS.gene56546:intron | 35.0% |
| !! | AGTGATTTGTTTATGTCGAG+TGG | + | chr4.4:30799489-30799508 | MS.gene56546:CDS | 35.0% |
| !! | TTTATCCTGGTGGATTATCT+TGG | + | chr4.4:30800052-30800071 | MS.gene56546:intron | 35.0% |
| AAATCTTCAGCTGATGCTGA+TGG | + | chr4.4:30800863-30800882 | MS.gene56546:CDS | 40.0% | |
| ATGGAAGATAAGAGACTGGT+TGG | - | chr4.4:30800560-30800579 | None:intergenic | 40.0% | |
| GAAGCTGACAGTTACTGAAA+TGG | + | chr4.4:30800787-30800806 | MS.gene56546:CDS | 40.0% | |
| GATTATAAGAATGTCGTGGG+AGG | + | chr4.4:30800899-30800918 | MS.gene56546:CDS | 40.0% | |
| GCAACTGCAGATTCAACAAA+TGG | + | chr4.4:30800659-30800678 | MS.gene56546:intron | 40.0% | |
| GTTTGTCTTAGTCCATTGGA+TGG | + | chr4.4:30799899-30799918 | MS.gene56546:intron | 40.0% | |
| TATGTTTGGGTCACAAGCAA+TGG | - | chr4.4:30800468-30800487 | None:intergenic | 40.0% | |
| TTCGGAGGATTTGAATGACT+GGG | + | chr4.4:30799452-30799471 | MS.gene56546:CDS | 40.0% | |
| TTGCTTGTGACCCAAACATA+TGG | + | chr4.4:30800468-30800487 | MS.gene56546:CDS | 40.0% | |
| TTTCGGAGGATTTGAATGAC+TGG | + | chr4.4:30799451-30799470 | MS.gene56546:CDS | 40.0% | |
| ! | AAGCAACTGAAAAGCGTGAA+TGG | - | chr4.4:30800258-30800277 | None:intergenic | 40.0% |
| ! | ATCTCATGGTAGTGAAGTCT+TGG | + | chr4.4:30800166-30800185 | MS.gene56546:CDS | 40.0% |
| ! | TCAGGCTTTTCCTCTTTTTC+AGG | - | chr4.4:30800719-30800738 | None:intergenic | 40.0% |
| ! | TCATGCAAATTGGGTTGCAA+TGG | + | chr4.4:30800628-30800647 | MS.gene56546:intron | 40.0% |
| ! | TTTCATGGGATTGGCAGTTA+TGG | + | chr4.4:30800925-30800944 | MS.gene56546:CDS | 40.0% |
| AAAGCGTGAATGGCATGCTT+AGG | - | chr4.4:30800248-30800267 | None:intergenic | 45.0% | |
| ACAAGACAATCCTTGGGAGA+AGG | - | chr4.4:30800200-30800219 | None:intergenic | 45.0% | |
| ACATTTCCTGACTGAGACTC+AGG | - | chr4.4:30800737-30800756 | None:intergenic | 45.0% | |
| ACCTCTCCAAACACCATTCT+CGG | - | chr4.4:30799525-30799544 | None:intergenic | 45.0% | |
| AGCCTCAACAAGACAATCCT+TGG | - | chr4.4:30800207-30800226 | None:intergenic | 45.0% | |
| CAGATCCAAGATAATCCACC+AGG | - | chr4.4:30800060-30800079 | None:intergenic | 45.0% | |
| GCCTCAACAAGACAATCCTT+GGG | - | chr4.4:30800206-30800225 | None:intergenic | 45.0% | |
| GGACATGGAAGATAAGAGAC+TGG | - | chr4.4:30800564-30800583 | None:intergenic | 45.0% | |
| TATGTGGGTTCAGAGTCTGT+TGG | + | chr4.4:30799834-30799853 | MS.gene56546:intron | 45.0% | |
| TCGAAGAAACTAGTCACTGC+AGG | - | chr4.4:30800512-30800531 | None:intergenic | 45.0% | |
| TTCTTCGAATCACAGCTTGC+AGG | + | chr4.4:30800524-30800543 | MS.gene56546:CDS | 45.0% | |
| ! | GTTGCTTAGCTCAAGTGTTG+AGG | + | chr4.4:30800271-30800290 | MS.gene56546:CDS | 45.0% |
| ! | TCCCAAGGATTGTCTTGTTG+AGG | + | chr4.4:30800202-30800221 | MS.gene56546:CDS | 45.0% |
| !! | CAATGGATTGCACAACAGTC+TGG | - | chr4.4:30800451-30800470 | None:intergenic | 45.0% |
| !!! | ACAAATGGTGCTGCTTTTGC+TGG | + | chr4.4:30800674-30800693 | MS.gene56546:CDS | 45.0% |
| AACGACGGTTACGTATCCAG+CGG | + | chr4.4:30799335-30799354 | MS.gene56546:CDS | 50.0% | |
| CAATCCTTGGGAGAAGGAGA+CGG | - | chr4.4:30800194-30800213 | None:intergenic | 50.0% | |
| CCCTGAGATAAAACCCTCGT+CGG | - | chr4.4:30799393-30799412 | None:intergenic | 50.0% | |
| GAAAAGCCTGAGTCTCAGTC+AGG | + | chr4.4:30800728-30800747 | MS.gene56546:CDS | 50.0% | |
| GGGAGGAAGTTTCATGGGAT+TGG | + | chr4.4:30800916-30800935 | MS.gene56546:CDS | 50.0% | |
| GTCGTGGGAGGAAGTTTCAT+GGG | + | chr4.4:30800911-30800930 | MS.gene56546:CDS | 50.0% | |
| TCTTCAGCTGATGCTGATGG+AGG | + | chr4.4:30800866-30800885 | MS.gene56546:CDS | 50.0% | |
| TGCTGATGGAGGCAGTTTCA+TGG | + | chr4.4:30800877-30800896 | MS.gene56546:CDS | 50.0% | |
| TGGGTTCAGAGTCTGTTGGA+CGG | + | chr4.4:30799838-30799857 | MS.gene56546:intron | 50.0% | |
| TGTCGTGGGAGGAAGTTTCA+TGG | + | chr4.4:30800910-30800929 | MS.gene56546:CDS | 50.0% | |
| !! | CCGACGAGGGTTTTATCTCA+GGG | + | chr4.4:30799390-30799409 | MS.gene56546:CDS | 50.0% |
| !! | CGACGAGGGTTTTATCTCAG+GGG | + | chr4.4:30799391-30799410 | MS.gene56546:CDS | 50.0% |
| ATCTCAGGGGACCAAAACCG+CGG | + | chr4.4:30799404-30799423 | MS.gene56546:CDS | 55.0% | |
| CAGCGGAGAAACAGTGGTCT+CGG | + | chr4.4:30799352-30799371 | MS.gene56546:CDS | 55.0% | |
| CCAAACACCATTCTCGGCGT+AGG | - | chr4.4:30799519-30799538 | None:intergenic | 55.0% | |
| CCTACGCCGAGAATGGTGTT+TGG | + | chr4.4:30799516-30799535 | MS.gene56546:CDS | 55.0% | |
| CGTATCCAGCGGAGAAACAG+TGG | + | chr4.4:30799346-30799365 | MS.gene56546:CDS | 55.0% | |
| GCCGAGAATGGTGTTTGGAG+AGG | + | chr4.4:30799521-30799540 | MS.gene56546:CDS | 55.0% | |
| GGGTTCAGAGTCTGTTGGAC+GGG | + | chr4.4:30799839-30799858 | MS.gene56546:intron | 55.0% | |
| GGTTCCGACGTTGAAGGAAG+CGG | + | chr4.4:30799542-30799561 | MS.gene56546:CDS | 55.0% | |
| TAAAACCCTCGTCGGCGATG+AGG | - | chr4.4:30799385-30799404 | None:intergenic | 55.0% | |
| TCCTCCGCTTCCTTCAACGT+CGG | - | chr4.4:30799549-30799568 | None:intergenic | 55.0% | |
| TGGAGAGGTTCCGACGTTGA+AGG | + | chr4.4:30799536-30799555 | MS.gene56546:CDS | 55.0% | |
| !! | ATGGCATGCTTAGGCACCGA+AGG | - | chr4.4:30800239-30800258 | None:intergenic | 55.0% |
| !! | GCCGACGAGGGTTTTATCTC+AGG | + | chr4.4:30799389-30799408 | MS.gene56546:CDS | 55.0% |
| !! | TAGCTCAAGTGTTGAGGCCC+AGG | + | chr4.4:30800277-30800296 | MS.gene56546:CDS | 55.0% |
| !!! | GGTGCTGCTTTTGCTGGTTC+TGG | + | chr4.4:30800680-30800699 | MS.gene56546:CDS | 55.0% |
| CGCGTGCTTCAATTCAGCCG+TGG | - | chr4.4:30799574-30799593 | None:intergenic | 60.0% | |
| CGTCGCTAGGTCAGGCTTCA+GGG | + | chr4.4:30799311-30799330 | MS.gene56546:CDS | 60.0% | |
| CGTGAAGCCTCTGCACACGT+CGG | + | chr4.4:30799428-30799447 | MS.gene56546:CDS | 60.0% | |
| GAAGGAAGCGGAGGAAGCCA+CGG | + | chr4.4:30799554-30799573 | MS.gene56546:CDS | 60.0% | |
| GGTTCCGTCTCCTTCTCCCA+AGG | + | chr4.4:30800187-30800206 | MS.gene56546:CDS | 60.0% | |
| GTCAGGCTTCAGGGGAACGA+CGG | + | chr4.4:30799320-30799339 | MS.gene56546:CDS | 60.0% | |
| GTCGCTAGGTCAGGCTTCAG+GGG | + | chr4.4:30799312-30799331 | MS.gene56546:CDS | 60.0% | |
| TCCGAAACCGACGTGTGCAG+AGG | - | chr4.4:30799438-30799457 | None:intergenic | 60.0% | |
| TCCGACGTTGAAGGAAGCGG+AGG | + | chr4.4:30799545-30799564 | MS.gene56546:CDS | 60.0% | |
| TGGAGAGCCTACGCCGAGAA+TGG | + | chr4.4:30799509-30799528 | MS.gene56546:CDS | 60.0% | |
| ! | AGGCTTCACGTCCGCGGTTT+TGG | - | chr4.4:30799418-30799437 | None:intergenic | 60.0% |
| ! | CGAGACCACTGTTTCTCCGC+TGG | - | chr4.4:30799354-30799373 | None:intergenic | 60.0% |
| !! | GCCTCTGCACACGTCGGTTT+CGG | + | chr4.4:30799434-30799453 | MS.gene56546:CDS | 60.0% |
| !! | TCTGCACACGTCGGTTTCGG+AGG | + | chr4.4:30799437-30799456 | MS.gene56546:CDS | 60.0% |
| GCGTCGCTAGGTCAGGCTTC+AGG | + | chr4.4:30799310-30799329 | MS.gene56546:CDS | 65.0% | |
| GTGCAGAGGCTTCACGTCCG+CGG | - | chr4.4:30799424-30799443 | None:intergenic | 65.0% | |
| TGACCTAGCGACGCCGATGC+CGG | - | chr4.4:30799304-30799323 | None:intergenic | 65.0% | |
| !! | CGGTGGCGGAACGATGAGGA+CGG | + | chr4.4:30799266-30799285 | MS.gene56546:CDS | 65.0% |
| AGGACGGCAGCCAAGCTCGC+CGG | + | chr4.4:30799282-30799301 | MS.gene56546:CDS | 70.0% | |
| GCAGCCAAGCTCGCCGGCAT+CGG | + | chr4.4:30799288-30799307 | MS.gene56546:CDS | 70.0% | |
| !! | GGCATCGGCGTCGCTAGGTC+AGG | + | chr4.4:30799303-30799322 | MS.gene56546:CDS | 70.0% |
| !! | TGGGCGGTGGCGGAACGATG+AGG | + | chr4.4:30799262-30799281 | MS.gene56546:CDS | 70.0% |
| ACCGCGCCTCATCGCCGACG+AGG | + | chr4.4:30799376-30799395 | MS.gene56546:CDS | 75.0% | |
| CCCTCGTCGGCGATGAGGCG+CGG | - | chr4.4:30799380-30799399 | None:intergenic | 75.0% | |
| CCGCGCCTCATCGCCGACGA+GGG | + | chr4.4:30799377-30799396 | MS.gene56546:CDS | 75.0% | |
| GACGCCGATGCCGGCGAGCT+TGG | - | chr4.4:30799295-30799314 | None:intergenic | 75.0% | |
| !! | TCGCCGGCATCGGCGTCGCT+AGG | + | chr4.4:30799298-30799317 | MS.gene56546:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 30799261 | 30800979 | 30799261 | ID=MS.gene56546 |
| chr4.4 | mRNA | 30799261 | 30800979 | 30799261 | ID=MS.gene56546.t1;Parent=MS.gene56546 |
| chr4.4 | exon | 30799261 | 30799601 | 30799261 | ID=MS.gene56546.t1.exon1;Parent=MS.gene56546.t1 |
| chr4.4 | CDS | 30799261 | 30799601 | 30799261 | ID=cds.MS.gene56546.t1;Parent=MS.gene56546.t1 |
| chr4.4 | exon | 30800127 | 30800298 | 30800127 | ID=MS.gene56546.t1.exon2;Parent=MS.gene56546.t1 |
| chr4.4 | CDS | 30800127 | 30800298 | 30800127 | ID=cds.MS.gene56546.t1;Parent=MS.gene56546.t1 |
| chr4.4 | exon | 30800452 | 30800545 | 30800452 | ID=MS.gene56546.t1.exon3;Parent=MS.gene56546.t1 |
| chr4.4 | CDS | 30800452 | 30800545 | 30800452 | ID=cds.MS.gene56546.t1;Parent=MS.gene56546.t1 |
| chr4.4 | exon | 30800669 | 30800979 | 30800669 | ID=MS.gene56546.t1.exon4;Parent=MS.gene56546.t1 |
| chr4.4 | CDS | 30800669 | 30800979 | 30800669 | ID=cds.MS.gene56546.t1;Parent=MS.gene56546.t1 |
| Gene Sequence |
| Protein sequence |
