Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57287.t1 | XP_013446817.1 | 96.5 | 486 | 14 | 1 | 1 | 486 | 2 | 484 | 1.30E-256 | 895.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57287.t1 | P94131 | 23.7 | 198 | 145 | 2 | 6 | 203 | 17 | 208 | 3.4e-06 | 54.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57287.t1 | A0A072TTK7 | 96.5 | 486 | 14 | 1 | 1 | 486 | 2 | 484 | 9.7e-257 | 895.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049993 | MS.gene57287 | 0.82602 | 3.41E-54 | -1.69E-46 |
| MS.gene050060 | MS.gene57287 | 0.805308 | 1.42E-49 | -1.69E-46 |
| MS.gene050640 | MS.gene57287 | 0.805477 | 1.31E-49 | -1.69E-46 |
| MS.gene051208 | MS.gene57287 | 0.810379 | 1.19E-50 | -1.69E-46 |
| MS.gene051525 | MS.gene57287 | 0.850496 | 1.64E-60 | -1.69E-46 |
| MS.gene052011 | MS.gene57287 | -0.85868 | 6.98E-63 | -1.69E-46 |
| MS.gene052134 | MS.gene57287 | 0.819026 | 1.44E-52 | -1.69E-46 |
| MS.gene052135 | MS.gene57287 | 0.815408 | 9.39E-52 | -1.69E-46 |
| MS.gene052589 | MS.gene57287 | 0.86971 | 2.53E-66 | -1.69E-46 |
| MS.gene052590 | MS.gene57287 | 0.863777 | 1.95E-64 | -1.69E-46 |
| MS.gene053330 | MS.gene57287 | 0.875786 | 2.34E-68 | -1.69E-46 |
| MS.gene053873 | MS.gene57287 | 0.803803 | 2.93E-49 | -1.69E-46 |
| MS.gene054102 | MS.gene57287 | 0.861183 | 1.23E-63 | -1.69E-46 |
| MS.gene054107 | MS.gene57287 | 0.800351 | 1.50E-48 | -1.69E-46 |
| MS.gene054110 | MS.gene57287 | 0.842048 | 3.28E-58 | -1.69E-46 |
| MS.gene054183 | MS.gene57287 | 0.815556 | 8.70E-52 | -1.69E-46 |
| MS.gene054349 | MS.gene57287 | 0.809324 | 2.00E-50 | -1.69E-46 |
| MS.gene054719 | MS.gene57287 | 0.826346 | 2.85E-54 | -1.69E-46 |
| MS.gene055049 | MS.gene57287 | 0.80038 | 1.48E-48 | -1.69E-46 |
| MS.gene055217 | MS.gene57287 | 0.845784 | 3.27E-59 | -1.69E-46 |
| MS.gene05553 | MS.gene57287 | 0.840781 | 7.07E-58 | -1.69E-46 |
| MS.gene056351 | MS.gene57287 | 0.818291 | 2.12E-52 | -1.69E-46 |
| MS.gene056514 | MS.gene57287 | 0.813206 | 2.88E-51 | -1.69E-46 |
| MS.gene056633 | MS.gene57287 | 0.833882 | 4.13E-56 | -1.69E-46 |
| MS.gene056981 | MS.gene57287 | 0.811186 | 7.94E-51 | -1.69E-46 |
| MS.gene057476 | MS.gene57287 | 0.813432 | 2.57E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene57287 | 0.801864 | 7.36E-49 | -1.69E-46 |
| MS.gene057825 | MS.gene57287 | 0.812068 | 5.11E-51 | -1.69E-46 |
| MS.gene057833 | MS.gene57287 | 0.811044 | 8.52E-51 | -1.69E-46 |
| MS.gene057843 | MS.gene57287 | 0.820311 | 7.34E-53 | -1.69E-46 |
| MS.gene057888 | MS.gene57287 | 0.820226 | 7.67E-53 | -1.69E-46 |
| MS.gene058444 | MS.gene57287 | 0.821166 | 4.67E-53 | -1.69E-46 |
| MS.gene058746 | MS.gene57287 | 0.805774 | 1.13E-49 | -1.69E-46 |
| MS.gene059011 | MS.gene57287 | 0.842507 | 2.48E-58 | -1.69E-46 |
| MS.gene059420 | MS.gene57287 | 0.801102 | 1.06E-48 | -1.69E-46 |
| MS.gene059512 | MS.gene57287 | 0.83569 | 1.45E-56 | -1.69E-46 |
| MS.gene060038 | MS.gene57287 | 0.801705 | 7.94E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57287.t1 | MTR_8g090270 | 96.502 | 486 | 14 | 1 | 1 | 486 | 2 | 484 | 0.0 | 949 |
| MS.gene57287.t1 | MTR_8g090275 | 80.206 | 485 | 90 | 3 | 1 | 483 | 1 | 481 | 0.0 | 784 |
| MS.gene57287.t1 | MTR_8g090285 | 73.786 | 515 | 104 | 3 | 1 | 486 | 2 | 514 | 0.0 | 761 |
| MS.gene57287.t1 | MTR_5g063390 | 69.053 | 475 | 142 | 3 | 1 | 471 | 1 | 474 | 0.0 | 677 |
| MS.gene57287.t1 | MTR_5g063390 | 64.451 | 346 | 118 | 3 | 130 | 471 | 1 | 345 | 4.43e-161 | 461 |
| MS.gene57287.t1 | MTR_5g019490 | 42.117 | 463 | 254 | 2 | 5 | 459 | 38 | 494 | 1.59e-110 | 336 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57287.t1 | AT5G10190 | 68.172 | 487 | 150 | 4 | 1 | 486 | 1 | 483 | 0.0 | 671 |
| MS.gene57287.t1 | AT1G78130 | 69.038 | 478 | 146 | 2 | 1 | 477 | 1 | 477 | 0.0 | 656 |
| MS.gene57287.t1 | AT5G10190 | 68.876 | 347 | 105 | 2 | 1 | 347 | 1 | 344 | 3.34e-167 | 476 |
| MS.gene57287.t1 | AT5G10190 | 63.408 | 358 | 126 | 4 | 130 | 486 | 1 | 354 | 2.71e-159 | 456 |
| MS.gene57287.t1 | AT4G36790 | 43.478 | 460 | 242 | 5 | 5 | 459 | 42 | 488 | 2.79e-124 | 371 |
| MS.gene57287.t1 | AT2G18590 | 37.581 | 463 | 265 | 5 | 12 | 459 | 19 | 472 | 1.99e-98 | 305 |
Find 103 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTATTTGGAGGATGGTTT+GGG | 0.176197 | 4.1:+10182072 | MS.gene57287:CDS |
| AATTCATTTGGTGGTCTATT+TGG | 0.184781 | 4.1:+10182059 | MS.gene57287:CDS |
| GGGACTATTTCTGCAAATAT+TGG | 0.217177 | 4.1:-10182287 | None:intergenic |
| ATCTTTCATTTCAGAATAAA+AGG | 0.221195 | 4.1:-10181862 | None:intergenic |
| GGTAAATTTAGCAGGTATTA+TGG | 0.231740 | 4.1:+10180301 | MS.gene57287:CDS |
| ATGGTACAACAGCAATTATT+TGG | 0.249179 | 4.1:+10182018 | MS.gene57287:CDS |
| ACATCAATCTTTGGTATATC+TGG | 0.252770 | 4.1:+10181708 | MS.gene57287:CDS |
| CCATCCACGCCCTTCGTTCA+TGG | 0.256004 | 4.1:+10182206 | MS.gene57287:CDS |
| TGTCTCCTCCACCTTCTTGC+AGG | 0.267945 | 4.1:+10180538 | MS.gene57287:CDS |
| ACAGAATTTGAAGATCCTTT+TGG | 0.270812 | 4.1:-10182428 | None:intergenic |
| CAATTGTGGAGTCAGCAATT+AGG | 0.274160 | 4.1:-10181593 | None:intergenic |
| GGTCTATTTGGAGGATGGTT+TGG | 0.276131 | 4.1:+10182071 | MS.gene57287:CDS |
| ATTGTAGCTCAAGGAGTATT+TGG | 0.288198 | 4.1:+10181933 | MS.gene57287:CDS |
| CACGCCCTTCGTTCATGGTT+TGG | 0.290160 | 4.1:+10182211 | MS.gene57287:CDS |
| AACATTATTCTTCCGGTGTT+TGG | 0.315148 | 4.1:-10182116 | None:intergenic |
| AGCAACCGTGGTGTAGCTTT+TGG | 0.330743 | 4.1:+10181618 | MS.gene57287:CDS |
| TAGTGTTATAGTTGGTATAT+TGG | 0.339062 | 4.1:+10181764 | MS.gene57287:CDS |
| TTGTGCCAACATTATTCTTC+CGG | 0.340790 | 4.1:-10182123 | None:intergenic |
| TCAGAATAAAAGGACTTGTT+TGG | 0.342500 | 4.1:-10181852 | None:intergenic |
| TTTATAATTTCTAATTCATT+TGG | 0.347136 | 4.1:+10182047 | MS.gene57287:CDS |
| ACTCTTTGGTTAGAACTAAC+AGG | 0.347707 | 4.1:+10181987 | MS.gene57287:CDS |
| TTTGGGTGGCTTCATCTAAC+AGG | 0.354682 | 4.1:+10181636 | MS.gene57287:CDS |
| GCAATTAGGGACTGGATTGC+TGG | 0.356921 | 4.1:-10181579 | None:intergenic |
| AATTGTGGAGTCAGCAATTA+GGG | 0.370621 | 4.1:-10181592 | None:intergenic |
| GGAAACCTTGGAAGCATCAT+TGG | 0.372474 | 4.1:+10181657 | MS.gene57287:CDS |
| AAGTTTACTAATGTACTATT+GGG | 0.380827 | 4.1:-10182696 | None:intergenic |
| TGCATTAGTTGAATCAGAAA+TGG | 0.385550 | 4.1:+10182598 | MS.gene57287:CDS |
| ATGAAGACACATACTGCAAT+TGG | 0.389599 | 4.1:-10182521 | None:intergenic |
| CTAGCCTCAACATCAATCTT+TGG | 0.405866 | 4.1:+10181699 | MS.gene57287:CDS |
| ATAGCCGTTCGCGATTTCTC+AGG | 0.408991 | 4.1:-10182308 | None:intergenic |
| TCAAGAGCTTTCAATGGGAT+TGG | 0.410764 | 4.1:+10181540 | MS.gene57287:CDS |
| CTTGCTCGCTCCTTGTCCCT+CGG | 0.415138 | 4.1:-10182569 | None:intergenic |
| ATAATTTCTAATTCATTTGG+TGG | 0.451585 | 4.1:+10182050 | MS.gene57287:CDS |
| AAGGGCGTGGATGGATCATT+AGG | 0.454956 | 4.1:-10182197 | None:intergenic |
| CAATTTCAAGAGCTTTCAAT+GGG | 0.458162 | 4.1:+10181535 | MS.gene57287:CDS |
| CCATGAACGAAGGGCGTGGA+TGG | 0.459288 | 4.1:-10182206 | None:intergenic |
| GCGAACGGCTATATATGCTT+TGG | 0.460484 | 4.1:+10182319 | MS.gene57287:CDS |
| TTGCTCGCTCCTTGTCCCTC+GGG | 0.461664 | 4.1:-10182568 | None:intergenic |
| TCATTTGGTGGTCTATTTGG+AGG | 0.472636 | 4.1:+10182062 | MS.gene57287:CDS |
| AACAACAAAATTGCTGCTAA+AGG | 0.476676 | 4.1:-10182167 | None:intergenic |
| GCTACAATTATCTGAAATGA+TGG | 0.478740 | 4.1:-10181918 | None:intergenic |
| TTGGTGGTCTATTTGGAGGA+TGG | 0.479982 | 4.1:+10182066 | MS.gene57287:CDS |
| GGACAAGGAGCGAGCAAGAA+TGG | 0.482854 | 4.1:+10182574 | MS.gene57287:CDS |
| GCAATTTCAAGAGCTTTCAA+TGG | 0.486903 | 4.1:+10181534 | MS.gene57287:CDS |
| GCATTGATTAGTGTTATAGT+TGG | 0.491293 | 4.1:+10181756 | MS.gene57287:CDS |
| AACGCTGACCCAACTGCGTT+AGG | 0.491732 | 4.1:+10180380 | MS.gene57287:CDS |
| ATCAGAAATGGAACAACTAA+AGG | 0.493730 | 4.1:+10182610 | MS.gene57287:CDS |
| GGTTATAAACCAATTCCAAA+AGG | 0.499646 | 4.1:+10182413 | MS.gene57287:CDS |
| TCTCACTCTCTACCGATCCC+TGG | 0.500868 | 4.1:+10180406 | MS.gene57287:CDS |
| TTGGTGCTGGTAAATTTAGC+AGG | 0.506244 | 4.1:+10180293 | MS.gene57287:CDS |
| CCAATCTCTTTGTATACTCC+TGG | 0.508882 | 4.1:-10180347 | None:intergenic |
| TGAGAGAACCTAACGCAGTT+GGG | 0.510746 | 4.1:-10180388 | None:intergenic |
| TCTATTTGGAGGATGGTTTG+GGG | 0.516912 | 4.1:+10182073 | MS.gene57287:CDS |
| CCAGGAGTATACAAAGAGAT+TGG | 0.519790 | 4.1:+10180347 | MS.gene57287:CDS |
| GGAGTATTTGGATCATTTCG+AGG | 0.525574 | 4.1:+10181945 | MS.gene57287:CDS |
| CGTGCACATGTCATTGCTCT+TGG | 0.526129 | 4.1:+10180479 | MS.gene57287:CDS |
| CAATCTTTGGTATATCTGGT+TGG | 0.529034 | 4.1:+10181712 | MS.gene57287:CDS |
| TGGAGTCAGCAATTAGGGAC+TGG | 0.533319 | 4.1:-10181587 | None:intergenic |
| GAGAACCAATGATGCTTCCA+AGG | 0.539889 | 4.1:-10181662 | None:intergenic |
| TGAGCTAAAACGCCAACAAT+CGG | 0.541127 | 4.1:-10182380 | None:intergenic |
| CAAAATTGCTGCTAAAGGAA+TGG | 0.545018 | 4.1:-10182162 | None:intergenic |
| GTGAGAGAACCTAACGCAGT+TGG | 0.547909 | 4.1:-10180389 | None:intergenic |
| AGAGACAGTAACATTGGTGC+TGG | 0.548018 | 4.1:+10180280 | MS.gene57287:CDS |
| GGTAACAGAATGCTTGAACC+AGG | 0.550482 | 4.1:-10180424 | None:intergenic |
| TATACCAAAGATTGATGTTG+AGG | 0.552826 | 4.1:-10181703 | None:intergenic |
| TTTCAGATAATTGTAGCTCA+AGG | 0.553580 | 4.1:+10181924 | MS.gene57287:CDS |
| TAGCCGTTCGCGATTTCTCA+GGG | 0.557145 | 4.1:-10182307 | None:intergenic |
| AATATTGGATCATTAGTTGC+TGG | 0.560697 | 4.1:-10182272 | None:intergenic |
| ACCACGGTTGCTATCAATTG+TGG | 0.566692 | 4.1:-10181607 | None:intergenic |
| CTTCATCTAACAGGAAACCT+TGG | 0.567615 | 4.1:+10181645 | MS.gene57287:CDS |
| TTATGAAACTCATGATAATG+AGG | 0.568900 | 4.1:+10182658 | MS.gene57287:CDS |
| GAAATCAGAGACAGTAACAT+TGG | 0.570485 | 4.1:+10180274 | MS.gene57287:CDS |
| CAAACCATGAACGAAGGGCG+TGG | 0.574661 | 4.1:-10182210 | None:intergenic |
| AAATGCGGCATCACTTGCTA+AGG | 0.575912 | 4.1:+10182475 | MS.gene57287:CDS |
| GAGTATTTGGATCATTTCGA+GGG | 0.578224 | 4.1:+10181946 | MS.gene57287:CDS |
| TGATATAACCTGCAAGAAGG+TGG | 0.588694 | 4.1:-10180546 | None:intergenic |
| GTAACAGAATGCTTGAACCA+GGG | 0.588995 | 4.1:-10180423 | None:intergenic |
| CACGATTGTGTCGTGTGGCA+AGG | 0.598295 | 4.1:-10180460 | None:intergenic |
| AGAAATGGAACAACTAAAGG+TGG | 0.599904 | 4.1:+10182613 | MS.gene57287:CDS |
| TATAACCTGCAAGAAGGTGG+AGG | 0.604688 | 4.1:-10180543 | None:intergenic |
| AGGTGATATAACCTGCAAGA+AGG | 0.605726 | 4.1:-10180549 | None:intergenic |
| ATGTTGGCACAAATAAGTGC+GGG | 0.610438 | 4.1:+10182134 | MS.gene57287:CDS |
| AGAATGCTTGAACCAGGGAT+CGG | 0.613048 | 4.1:-10180418 | None:intergenic |
| GAACTAACAGGCTTCTCACA+TGG | 0.615234 | 4.1:+10181999 | MS.gene57287:CDS |
| AAACACCGGAAGAATAATGT+TGG | 0.617470 | 4.1:+10182118 | MS.gene57287:CDS |
| TTTCACATACCCGAGGGACA+AGG | 0.623199 | 4.1:+10182559 | MS.gene57287:CDS |
| GCTGATGAGTCATTGTTACC+AGG | 0.624049 | 4.1:+10180329 | MS.gene57287:CDS |
| TTCTCTATTTCACATACCCG+AGG | 0.625461 | 4.1:+10182552 | MS.gene57287:CDS |
| TGAAACTGATAGAGAAAATG+CGG | 0.626937 | 4.1:+10182460 | MS.gene57287:CDS |
| GTGGCAAGGTAAGCAGCAAG+AGG | 0.631198 | 4.1:-10180446 | None:intergenic |
| AAAACCAAACCATGAACGAA+GGG | 0.647921 | 4.1:-10182215 | None:intergenic |
| TAAAACCAAACCATGAACGA+AGG | 0.648049 | 4.1:-10182216 | None:intergenic |
| AATGTTGGCACAAATAAGTG+CGG | 0.648186 | 4.1:+10182133 | MS.gene57287:CDS |
| TCTCTATTTCACATACCCGA+GGG | 0.649176 | 4.1:+10182553 | MS.gene57287:CDS |
| GCTAAAACGCCAACAATCGG+TGG | 0.651078 | 4.1:-10182377 | None:intergenic |
| TGGCAAGGTAAGCAGCAAGA+GGG | 0.653848 | 4.1:-10180445 | None:intergenic |
| TCTCAACGGTTACCAAACAC+CGG | 0.659434 | 4.1:+10182104 | MS.gene57287:CDS |
| CTGGATTGCTGGAATCACAA+TGG | 0.666656 | 4.1:-10181568 | None:intergenic |
| TCCACAATTGATAGCAACCG+TGG | 0.681448 | 4.1:+10181606 | MS.gene57287:CDS |
| AGTCCCTGAGAAATCGCGAA+CGG | 0.681481 | 4.1:+10182304 | MS.gene57287:CDS |
| ATGTGCACGATTGTGTCGTG+TGG | 0.695146 | 4.1:-10180465 | None:intergenic |
| GCCACCCAAAAGCTACACCA+CGG | 0.722794 | 4.1:-10181623 | None:intergenic |
| CTAAAGGTGGAACATGACAG+AGG | 0.739543 | 4.1:+10182626 | MS.gene57287:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATAAAATTAATTTA+TGG | - | chr4.1:10181011-10181030 | None:intergenic | 0.0% |
| !! | TTTATAATTTCTAATTCATT+TGG | + | chr4.1:10182047-10182066 | MS.gene57287:CDS | 10.0% |
| !!! | ACTTTAATCTTCTTATATTT+TGG | - | chr4.1:10181105-10181124 | None:intergenic | 15.0% |
| !! | AAATAAAATACGAGTTGTTA+AGG | - | chr4.1:10180836-10180855 | None:intergenic | 20.0% |
| !! | AATAAAATACGAGTTGTTAA+GGG | - | chr4.1:10180835-10180854 | None:intergenic | 20.0% |
| !! | ACATAAAAACGATGAATATA+TGG | + | chr4.1:10181062-10181081 | MS.gene57287:intron | 20.0% |
| !! | ATAATTTCTAATTCATTTGG+TGG | + | chr4.1:10182050-10182069 | MS.gene57287:CDS | 20.0% |
| !! | ATCTTTCATTTCAGAATAAA+AGG | - | chr4.1:10181865-10181884 | None:intergenic | 20.0% |
| !! | CTAACATGTTATTGTATAAT+AGG | + | chr4.1:10181509-10181528 | MS.gene57287:intron | 20.0% |
| !! | TATAAGAAGATTAAAGTTAC+TGG | + | chr4.1:10181108-10181127 | MS.gene57287:intron | 20.0% |
| !!! | CTTGTTTATTATGATTGTTT+TGG | + | chr4.1:10180593-10180612 | MS.gene57287:intron | 20.0% |
| !!! | TATTATGATTGTTTTGGTTA+TGG | + | chr4.1:10180599-10180618 | MS.gene57287:intron | 20.0% |
| !!! | TTTCTTTTATATTAACCCTT+CGG | - | chr4.1:10181279-10181298 | None:intergenic | 20.0% |
| ! | TAAGAAACATTTGATATGCA+AGG | - | chr4.1:10181455-10181474 | None:intergenic | 25.0% |
| ! | TAGAAATGATCTAACTGTTA+AGG | - | chr4.1:10180918-10180937 | None:intergenic | 25.0% |
| ! | TATAGTAAGTACAACTCATA+TGG | - | chr4.1:10181487-10181506 | None:intergenic | 25.0% |
| !! | ATGCATGTGAGAATAATTTT+TGG | + | chr4.1:10181194-10181213 | MS.gene57287:intron | 25.0% |
| !! | TAGTGTTATAGTTGGTATAT+TGG | + | chr4.1:10181764-10181783 | MS.gene57287:CDS | 25.0% |
| !! | TTATGAAACTCATGATAATG+AGG | + | chr4.1:10182658-10182677 | MS.gene57287:CDS | 25.0% |
| !!! | ATACATTTTGAAAAGTAGTC+TGG | + | chr4.1:10181343-10181362 | MS.gene57287:intron | 25.0% |
| !!! | ATATTTTGGCACTAAATCTA+CGG | - | chr4.1:10181091-10181110 | None:intergenic | 25.0% |
| !!! | ATCGTTTTTATGTAATCAAG+GGG | - | chr4.1:10181055-10181074 | None:intergenic | 25.0% |
| !!! | CATCGTTTTTATGTAATCAA+GGG | - | chr4.1:10181056-10181075 | None:intergenic | 25.0% |
| !!! | GTAGTTATTTTGTTGTCTTT+TGG | - | chr4.1:10181819-10181838 | None:intergenic | 25.0% |
| !!! | GTCAGATTTTACTTATTTCT+CGG | + | chr4.1:10181216-10181235 | MS.gene57287:intron | 25.0% |
| !!! | GTTTATCATTTTTCACTCTT+TGG | + | chr4.1:10181973-10181992 | MS.gene57287:CDS | 25.0% |
| !!! | TCATCGTTTTTATGTAATCA+AGG | - | chr4.1:10181057-10181076 | None:intergenic | 25.0% |
| AACAACAAAATTGCTGCTAA+AGG | - | chr4.1:10182170-10182189 | None:intergenic | 30.0% | |
| AATATTGGATCATTAGTTGC+TGG | - | chr4.1:10182275-10182294 | None:intergenic | 30.0% | |
| ACATCAATCTTTGGTATATC+TGG | + | chr4.1:10181708-10181727 | MS.gene57287:CDS | 30.0% | |
| AGTACAACTCATATGGTATA+AGG | - | chr4.1:10181480-10181499 | None:intergenic | 30.0% | |
| ATATTAACCCTTCGGTTATT+AGG | - | chr4.1:10181271-10181290 | None:intergenic | 30.0% | |
| ATCAGAAATGGAACAACTAA+AGG | + | chr4.1:10182610-10182629 | MS.gene57287:CDS | 30.0% | |
| ATGGTACAACAGCAATTATT+TGG | + | chr4.1:10182018-10182037 | MS.gene57287:CDS | 30.0% | |
| CAATTTCAAGAGCTTTCAAT+GGG | + | chr4.1:10181535-10181554 | MS.gene57287:CDS | 30.0% | |
| CTATGAAAAATTGAAAAGCG+AGG | - | chr4.1:10180572-10180591 | None:intergenic | 30.0% | |
| GGTAAATTTAGCAGGTATTA+TGG | + | chr4.1:10180301-10180320 | MS.gene57287:CDS | 30.0% | |
| GGTTATAAACCAATTCCAAA+AGG | + | chr4.1:10182413-10182432 | MS.gene57287:CDS | 30.0% | |
| TATACCAAAGATTGATGTTG+AGG | - | chr4.1:10181706-10181725 | None:intergenic | 30.0% | |
| TGAAACTGATAGAGAAAATG+CGG | + | chr4.1:10182460-10182479 | MS.gene57287:CDS | 30.0% | |
| TGCATTAGTTGAATCAGAAA+TGG | + | chr4.1:10182598-10182617 | MS.gene57287:CDS | 30.0% | |
| TTTCAGATAATTGTAGCTCA+AGG | + | chr4.1:10181924-10181943 | MS.gene57287:CDS | 30.0% | |
| ! | AATTCATTTGGTGGTCTATT+TGG | + | chr4.1:10182059-10182078 | MS.gene57287:CDS | 30.0% |
| ! | ACAGAATTTGAAGATCCTTT+TGG | - | chr4.1:10182431-10182450 | None:intergenic | 30.0% |
| ! | GCTACAATTATCTGAAATGA+TGG | - | chr4.1:10181921-10181940 | None:intergenic | 30.0% |
| ! | TCAGAATAAAAGGACTTGTT+TGG | - | chr4.1:10181855-10181874 | None:intergenic | 30.0% |
| !! | CTCGCTTTTCAATTTTTCAT+AGG | + | chr4.1:10180570-10180589 | MS.gene57287:intron | 30.0% |
| !! | GCATTGATTAGTGTTATAGT+TGG | + | chr4.1:10181756-10181775 | MS.gene57287:CDS | 30.0% |
| !! | GCTCAGAAATAAAGTATTGT+GGG | + | chr4.1:10181419-10181438 | MS.gene57287:intron | 30.0% |
| !! | TGCTCAGAAATAAAGTATTG+TGG | + | chr4.1:10181418-10181437 | MS.gene57287:intron | 30.0% |
| !!! | GGTTTGGTTTTAGTCATTTT+GGG | + | chr4.1:10182227-10182246 | MS.gene57287:CDS | 30.0% |
| !!! | GTTTTAGCTCAACATGTTTA+TGG | + | chr4.1:10182392-10182411 | MS.gene57287:CDS | 30.0% |
| !!! | GTTTTGGTTATGGACATAAT+GGG | + | chr4.1:10180609-10180628 | MS.gene57287:intron | 30.0% |
| !!! | TGGTTTGGTTTTAGTCATTT+TGG | + | chr4.1:10182226-10182245 | MS.gene57287:CDS | 30.0% |
| !!! | TGTTTTGGTTATGGACATAA+TGG | + | chr4.1:10180608-10180627 | MS.gene57287:intron | 30.0% |
| !!! | TTGGGGATTTTTTATCTCAA+CGG | + | chr4.1:10182090-10182109 | MS.gene57287:CDS | 30.0% |
| !!! | TTTGAAGATCCTTTTGGAAT+TGG | - | chr4.1:10182425-10182444 | None:intergenic | 30.0% |
| AAAACCAAACCATGAACGAA+GGG | - | chr4.1:10182218-10182237 | None:intergenic | 35.0% | |
| AAACACCGGAAGAATAATGT+TGG | + | chr4.1:10182118-10182137 | MS.gene57287:CDS | 35.0% | |
| AACATTATTCTTCCGGTGTT+TGG | - | chr4.1:10182119-10182138 | None:intergenic | 35.0% | |
| AATGTTGGCACAAATAAGTG+CGG | + | chr4.1:10182133-10182152 | MS.gene57287:CDS | 35.0% | |
| AATTGTGGAGTCAGCAATTA+GGG | - | chr4.1:10181595-10181614 | None:intergenic | 35.0% | |
| ACTCTTTGGTTAGAACTAAC+AGG | + | chr4.1:10181987-10182006 | MS.gene57287:CDS | 35.0% | |
| AGAAATGGAACAACTAAAGG+TGG | + | chr4.1:10182613-10182632 | MS.gene57287:CDS | 35.0% | |
| ATGAAGACACATACTGCAAT+TGG | - | chr4.1:10182524-10182543 | None:intergenic | 35.0% | |
| ATTCTCACATGCATTGAACT+TGG | - | chr4.1:10181188-10181207 | None:intergenic | 35.0% | |
| CAAAATTGCTGCTAAAGGAA+TGG | - | chr4.1:10182165-10182184 | None:intergenic | 35.0% | |
| CAATCTTTGGTATATCTGGT+TGG | + | chr4.1:10181712-10181731 | MS.gene57287:CDS | 35.0% | |
| GAAATCAGAGACAGTAACAT+TGG | + | chr4.1:10180274-10180293 | MS.gene57287:CDS | 35.0% | |
| GAGTATTTGGATCATTTCGA+GGG | + | chr4.1:10181946-10181965 | MS.gene57287:CDS | 35.0% | |
| GCAATTTCAAGAGCTTTCAA+TGG | + | chr4.1:10181534-10181553 | MS.gene57287:CDS | 35.0% | |
| TAAAACCAAACCATGAACGA+AGG | - | chr4.1:10182219-10182238 | None:intergenic | 35.0% | |
| TTCTCACATGCATTGAACTT+GGG | - | chr4.1:10181187-10181206 | None:intergenic | 35.0% | |
| TTGTGCCAACATTATTCTTC+CGG | - | chr4.1:10182126-10182145 | None:intergenic | 35.0% | |
| ! | CTTATTTCTCGGTCGAAATT+TGG | + | chr4.1:10181227-10181246 | MS.gene57287:intron | 35.0% |
| ! | TTAAAGTTACTGGTCTCAAG+TGG | + | chr4.1:10181118-10181137 | MS.gene57287:intron | 35.0% |
| ! | TTGGAGAATAGCTTTTCATC+TGG | + | chr4.1:10181731-10181750 | MS.gene57287:CDS | 35.0% |
| ! | TTTGATTCTAAAGACCCTAG+CGG | + | chr4.1:10181377-10181396 | MS.gene57287:intron | 35.0% |
| !! | ATTGTAGCTCAAGGAGTATT+TGG | + | chr4.1:10181933-10181952 | MS.gene57287:CDS | 35.0% |
| !! | GGGACTATTTCTGCAAATAT+TGG | - | chr4.1:10182290-10182309 | None:intergenic | 35.0% |
| !! | TCGATCTTTTGAGAGTATGT+TGG | + | chr4.1:10182343-10182362 | MS.gene57287:CDS | 35.0% |
| !! | TTGTTGTCTTTTGGAAAGTG+TGG | - | chr4.1:10181810-10181829 | None:intergenic | 35.0% |
| !!! | TTTTGGGACTAATCACTTTC+TGG | + | chr4.1:10182243-10182262 | MS.gene57287:CDS | 35.0% |
| AGGTGATATAACCTGCAAGA+AGG | - | chr4.1:10180552-10180571 | None:intergenic | 40.0% | |
| ATGCATTGAACTTGGGGTTT+GGG | - | chr4.1:10181180-10181199 | None:intergenic | 40.0% | |
| ATGTTGGCACAAATAAGTGC+GGG | + | chr4.1:10182134-10182153 | MS.gene57287:CDS | 40.0% | |
| CAATTGTGGAGTCAGCAATT+AGG | - | chr4.1:10181596-10181615 | None:intergenic | 40.0% | |
| CCAATCTCTTTGTATACTCC+TGG | - | chr4.1:10180350-10180369 | None:intergenic | 40.0% | |
| CGGTCGAAATTTGGATTACT+AGG | + | chr4.1:10181236-10181255 | MS.gene57287:intron | 40.0% | |
| CTAGCCTCAACATCAATCTT+TGG | + | chr4.1:10181699-10181718 | MS.gene57287:CDS | 40.0% | |
| CTTCATCTAACAGGAAACCT+TGG | + | chr4.1:10181645-10181664 | MS.gene57287:CDS | 40.0% | |
| GTAACAGAATGCTTGAACCA+GGG | - | chr4.1:10180426-10180445 | None:intergenic | 40.0% | |
| GTCTATTTGGAGGATGGTTT+GGG | + | chr4.1:10182072-10182091 | MS.gene57287:CDS | 40.0% | |
| TCAAGAGCTTTCAATGGGAT+TGG | + | chr4.1:10181540-10181559 | MS.gene57287:CDS | 40.0% | |
| TCTATTTGGAGGATGGTTTG+GGG | + | chr4.1:10182073-10182092 | MS.gene57287:CDS | 40.0% | |
| TCTCACATGCATTGAACTTG+GGG | - | chr4.1:10181186-10181205 | None:intergenic | 40.0% | |
| TCTCTATTTCACATACCCGA+GGG | + | chr4.1:10182553-10182572 | MS.gene57287:CDS | 40.0% | |
| TGAGCTAAAACGCCAACAAT+CGG | - | chr4.1:10182383-10182402 | None:intergenic | 40.0% | |
| TGATATAACCTGCAAGAAGG+TGG | - | chr4.1:10180549-10180568 | None:intergenic | 40.0% | |
| TTCTCTATTTCACATACCCG+AGG | + | chr4.1:10182552-10182571 | MS.gene57287:CDS | 40.0% | |
| ! | CCAGGAGTATACAAAGAGAT+TGG | + | chr4.1:10180347-10180366 | MS.gene57287:CDS | 40.0% |
| ! | GAGAATAGCTTTTCATCTGG+TGG | + | chr4.1:10181734-10181753 | MS.gene57287:CDS | 40.0% |
| ! | GGAGTATTTGGATCATTTCG+AGG | + | chr4.1:10181945-10181964 | MS.gene57287:CDS | 40.0% |
| ! | TCATTTGGTGGTCTATTTGG+AGG | + | chr4.1:10182062-10182081 | MS.gene57287:CDS | 40.0% |
| !! | TTGGTGCTGGTAAATTTAGC+AGG | + | chr4.1:10180293-10180312 | MS.gene57287:CDS | 40.0% |
| !!! | TGCTCTTGGTGCTTTTCTTT+GGG | + | chr4.1:10180493-10180512 | MS.gene57287:CDS | 40.0% |
| !!! | TTGCTCTTGGTGCTTTTCTT+TGG | + | chr4.1:10180492-10180511 | MS.gene57287:CDS | 40.0% |
| ACCACGGTTGCTATCAATTG+TGG | - | chr4.1:10181610-10181629 | None:intergenic | 45.0% | |
| ACCCTTCGGTTATTAGGTGA+AGG | - | chr4.1:10181265-10181284 | None:intergenic | 45.0% | |
| AGAATGCTTGAACCAGGGAT+CGG | - | chr4.1:10180421-10180440 | None:intergenic | 45.0% | |
| AGAGACAGTAACATTGGTGC+TGG | + | chr4.1:10180280-10180299 | MS.gene57287:CDS | 45.0% | |
| ATGTGTGTAGTTTCACCGCT+AGG | - | chr4.1:10181395-10181414 | None:intergenic | 45.0% | |
| CATGCATTGAACTTGGGGTT+TGG | - | chr4.1:10181181-10181200 | None:intergenic | 45.0% | |
| CCCTTCACCTAATAACCGAA+GGG | + | chr4.1:10181261-10181280 | MS.gene57287:intron | 45.0% | |
| CCCTTCGGTTATTAGGTGAA+GGG | - | chr4.1:10181264-10181283 | None:intergenic | 45.0% | |
| CCTTCGGTTATTAGGTGAAG+GGG | - | chr4.1:10181263-10181282 | None:intergenic | 45.0% | |
| CTAAAGGTGGAACATGACAG+AGG | + | chr4.1:10182626-10182645 | MS.gene57287:CDS | 45.0% | |
| CTGGATTGCTGGAATCACAA+TGG | - | chr4.1:10181571-10181590 | None:intergenic | 45.0% | |
| GAACTAACAGGCTTCTCACA+TGG | + | chr4.1:10181999-10182018 | MS.gene57287:CDS | 45.0% | |
| GAGAACCAATGATGCTTCCA+AGG | - | chr4.1:10181665-10181684 | None:intergenic | 45.0% | |
| GCGAACGGCTATATATGCTT+TGG | + | chr4.1:10182319-10182338 | MS.gene57287:CDS | 45.0% | |
| GCTGATGAGTCATTGTTACC+AGG | + | chr4.1:10180329-10180348 | MS.gene57287:CDS | 45.0% | |
| GGTAACAGAATGCTTGAACC+AGG | - | chr4.1:10180427-10180446 | None:intergenic | 45.0% | |
| GGTCTATTTGGAGGATGGTT+TGG | + | chr4.1:10182071-10182090 | MS.gene57287:CDS | 45.0% | |
| TATAACCTGCAAGAAGGTGG+AGG | - | chr4.1:10180546-10180565 | None:intergenic | 45.0% | |
| TCTCAACGGTTACCAAACAC+CGG | + | chr4.1:10182104-10182123 | MS.gene57287:CDS | 45.0% | |
| TGAGAGAACCTAACGCAGTT+GGG | - | chr4.1:10180391-10180410 | None:intergenic | 45.0% | |
| TGTGTGTAGTTTCACCGCTA+GGG | - | chr4.1:10181394-10181413 | None:intergenic | 45.0% | |
| TTTGGGTGGCTTCATCTAAC+AGG | + | chr4.1:10181636-10181655 | MS.gene57287:CDS | 45.0% | |
| ! | AAATGCGGCATCACTTGCTA+AGG | + | chr4.1:10182475-10182494 | MS.gene57287:CDS | 45.0% |
| ! | TCCACAATTGATAGCAACCG+TGG | + | chr4.1:10181606-10181625 | MS.gene57287:CDS | 45.0% |
| ! | TTGGTGGTCTATTTGGAGGA+TGG | + | chr4.1:10182066-10182085 | MS.gene57287:CDS | 45.0% |
| !! | GGAAACCTTGGAAGCATCAT+TGG | + | chr4.1:10181657-10181676 | MS.gene57287:CDS | 45.0% |
| !! | TCTTTTGCTCCACCGATTGT+TGG | + | chr4.1:10182368-10182387 | MS.gene57287:CDS | 45.0% |
| !!! | AATTGATTAATTTTATTTTT+AGG | - | chr4.1:10180864-10180883 | None:intergenic | 5.0% |
| AGTCCCTGAGAAATCGCGAA+CGG | + | chr4.1:10182304-10182323 | MS.gene57287:CDS | 50.0% | |
| ATAGCCGTTCGCGATTTCTC+AGG | - | chr4.1:10182311-10182330 | None:intergenic | 50.0% | |
| ATGTGCACGATTGTGTCGTG+TGG | - | chr4.1:10180468-10180487 | None:intergenic | 50.0% | |
| CCCCTTCACCTAATAACCGA+AGG | + | chr4.1:10181260-10181279 | MS.gene57287:intron | 50.0% | |
| CGTGCACATGTCATTGCTCT+TGG | + | chr4.1:10180479-10180498 | MS.gene57287:CDS | 50.0% | |
| GCAATTAGGGACTGGATTGC+TGG | - | chr4.1:10181582-10181601 | None:intergenic | 50.0% | |
| GCTAAAACGCCAACAATCGG+TGG | - | chr4.1:10182380-10182399 | None:intergenic | 50.0% | |
| GTGAGAGAACCTAACGCAGT+TGG | - | chr4.1:10180392-10180411 | None:intergenic | 50.0% | |
| TAGCCGTTCGCGATTTCTCA+GGG | - | chr4.1:10182310-10182329 | None:intergenic | 50.0% | |
| TGGAGTCAGCAATTAGGGAC+TGG | - | chr4.1:10181590-10181609 | None:intergenic | 50.0% | |
| TGGCAAGGTAAGCAGCAAGA+GGG | - | chr4.1:10180448-10180467 | None:intergenic | 50.0% | |
| TTTCACATACCCGAGGGACA+AGG | + | chr4.1:10182559-10182578 | MS.gene57287:CDS | 50.0% | |
| ! | AAGGGCGTGGATGGATCATT+AGG | - | chr4.1:10182200-10182219 | None:intergenic | 50.0% |
| ! | AGCAACCGTGGTGTAGCTTT+TGG | + | chr4.1:10181618-10181637 | MS.gene57287:CDS | 50.0% |
| ! | GCAACCGTGGTGTAGCTTTT+GGG | + | chr4.1:10181619-10181638 | MS.gene57287:CDS | 50.0% |
| AACGCTGACCCAACTGCGTT+AGG | + | chr4.1:10180380-10180399 | MS.gene57287:CDS | 55.0% | |
| CAAACCATGAACGAAGGGCG+TGG | - | chr4.1:10182213-10182232 | None:intergenic | 55.0% | |
| CACGATTGTGTCGTGTGGCA+AGG | - | chr4.1:10180463-10180482 | None:intergenic | 55.0% | |
| CACGCCCTTCGTTCATGGTT+TGG | + | chr4.1:10182211-10182230 | MS.gene57287:CDS | 55.0% | |
| GCCACCCAAAAGCTACACCA+CGG | - | chr4.1:10181626-10181645 | None:intergenic | 55.0% | |
| GGACAAGGAGCGAGCAAGAA+TGG | + | chr4.1:10182574-10182593 | MS.gene57287:CDS | 55.0% | |
| GTGGCAAGGTAAGCAGCAAG+AGG | - | chr4.1:10180449-10180468 | None:intergenic | 55.0% | |
| TCTCACTCTCTACCGATCCC+TGG | + | chr4.1:10180406-10180425 | MS.gene57287:CDS | 55.0% | |
| TGTCTCCTCCACCTTCTTGC+AGG | + | chr4.1:10180538-10180557 | MS.gene57287:CDS | 55.0% | |
| ! | ACCGTGGTGTAGCTTTTGGG+TGG | + | chr4.1:10181622-10181641 | MS.gene57287:CDS | 55.0% |
| CCATCCACGCCCTTCGTTCA+TGG | + | chr4.1:10182206-10182225 | MS.gene57287:CDS | 60.0% | |
| CTTGCTCGCTCCTTGTCCCT+CGG | - | chr4.1:10182572-10182591 | None:intergenic | 60.0% | |
| TTGCTCGCTCCTTGTCCCTC+GGG | - | chr4.1:10182571-10182590 | None:intergenic | 60.0% | |
| ! | CCATGAACGAAGGGCGTGGA+TGG | - | chr4.1:10182209-10182228 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 10180272 | 10182703 | 10180272 | ID=MS.gene57287 |
| chr4.1 | mRNA | 10180272 | 10182703 | 10180272 | ID=MS.gene57287.t1;Parent=MS.gene57287 |
| chr4.1 | exon | 10180272 | 10180559 | 10180272 | ID=MS.gene57287.t1.exon1;Parent=MS.gene57287.t1 |
| chr4.1 | CDS | 10180272 | 10180559 | 10180272 | ID=cds.MS.gene57287.t1;Parent=MS.gene57287.t1 |
| chr4.1 | exon | 10181531 | 10182703 | 10181531 | ID=MS.gene57287.t1.exon2;Parent=MS.gene57287.t1 |
| chr4.1 | CDS | 10181531 | 10182703 | 10181531 | ID=cds.MS.gene57287.t1;Parent=MS.gene57287.t1 |
| Gene Sequence |
| Protein sequence |
