Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57701.t1 | XP_003609510.1 | 97.1 | 485 | 14 | 0 | 1 | 485 | 1 | 485 | 2.50E-255 | 891 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57701.t1 | G7JHS8 | 97.1 | 485 | 14 | 0 | 1 | 485 | 1 | 485 | 1.8e-255 | 891.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049328 | MS.gene57701 | 0.801004 | 1.10E-48 | -1.69E-46 |
| MS.gene049397 | MS.gene57701 | 0.813882 | 2.04E-51 | -1.69E-46 |
| MS.gene049418 | MS.gene57701 | 0.816173 | 6.34E-52 | -1.69E-46 |
| MS.gene049989 | MS.gene57701 | 0.874954 | 4.51E-68 | -1.69E-46 |
| MS.gene050297 | MS.gene57701 | 0.875412 | 3.14E-68 | -1.69E-46 |
| MS.gene050310 | MS.gene57701 | 0.844859 | 5.82E-59 | -1.69E-46 |
| MS.gene050648 | MS.gene57701 | 0.844411 | 7.69E-59 | -1.69E-46 |
| MS.gene051067 | MS.gene57701 | 0.813168 | 2.93E-51 | -1.69E-46 |
| MS.gene051087 | MS.gene57701 | 0.807406 | 5.14E-50 | -1.69E-46 |
| MS.gene051094 | MS.gene57701 | 0.825533 | 4.45E-54 | -1.69E-46 |
| MS.gene051263 | MS.gene57701 | 0.823829 | 1.12E-53 | -1.69E-46 |
| MS.gene051629 | MS.gene57701 | 0.817255 | 3.62E-52 | -1.69E-46 |
| MS.gene051698 | MS.gene57701 | 0.801291 | 9.65E-49 | -1.69E-46 |
| MS.gene052367 | MS.gene57701 | 0.851502 | 8.51E-61 | -1.69E-46 |
| MS.gene052732 | MS.gene57701 | 0.810636 | 1.04E-50 | -1.69E-46 |
| MS.gene053416 | MS.gene57701 | 0.835568 | 1.56E-56 | -1.69E-46 |
| MS.gene053417 | MS.gene57701 | 0.83984 | 1.25E-57 | -1.69E-46 |
| MS.gene055411 | MS.gene57701 | 0.804068 | 2.58E-49 | -1.69E-46 |
| MS.gene056041 | MS.gene57701 | 0.803274 | 3.77E-49 | -1.69E-46 |
| MS.gene056228 | MS.gene57701 | 0.808965 | 2.39E-50 | -1.69E-46 |
| MS.gene056520 | MS.gene57701 | 0.805974 | 1.03E-49 | -1.69E-46 |
| MS.gene056526 | MS.gene57701 | 0.801748 | 7.78E-49 | -1.69E-46 |
| MS.gene057004 | MS.gene57701 | 0.822062 | 2.90E-53 | -1.69E-46 |
| MS.gene057483 | MS.gene57701 | 0.822565 | 2.21E-53 | -1.69E-46 |
| MS.gene058196 | MS.gene57701 | 0.85167 | 7.63E-61 | -1.69E-46 |
| MS.gene058197 | MS.gene57701 | 0.878347 | 3.02E-69 | -1.69E-46 |
| MS.gene058198 | MS.gene57701 | 0.875382 | 3.22E-68 | -1.69E-46 |
| MS.gene059300 | MS.gene57701 | 0.876103 | 1.82E-68 | -1.69E-46 |
| MS.gene060473 | MS.gene57701 | 0.814516 | 1.48E-51 | -1.69E-46 |
| MS.gene060565 | MS.gene57701 | 0.822688 | 2.07E-53 | -1.69E-46 |
| MS.gene06057 | MS.gene57701 | 0.865708 | 4.86E-65 | -1.69E-46 |
| MS.gene061260 | MS.gene57701 | 0.819042 | 1.43E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57701.t1 | MTR_4g116470 | 97.320 | 485 | 13 | 0 | 1 | 485 | 1 | 485 | 0.0 | 977 |
| MS.gene57701.t1 | MTR_8g014610 | 80.303 | 66 | 13 | 0 | 137 | 202 | 75 | 140 | 2.23e-23 | 103 |
| MS.gene57701.t1 | MTR_4g116465 | 63.462 | 52 | 15 | 2 | 432 | 483 | 21 | 68 | 4.12e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 88 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGTCTTGTTGCCATTTA+AGG | 0.175834 | 8.3:-9433508 | None:intergenic |
| CCACCACCGCTTTCCTTTGC+TGG | 0.184984 | 8.3:-9434177 | None:intergenic |
| CCGCTTTCCTTTGCTGGTTT+CGG | 0.229591 | 8.3:-9434171 | None:intergenic |
| AAGATTACCATTCTTCTAAA+AGG | 0.245256 | 8.3:+9433824 | MS.gene57701:CDS |
| TTCTTGATCAACTTGGTATC+TGG | 0.246984 | 8.3:-9434450 | None:intergenic |
| ACTCACGAAAATTTAAGATT+TGG | 0.253055 | 8.3:-9434825 | None:intergenic |
| TTATGAAACAAAGTCCTAAA+TGG | 0.256561 | 8.3:-9434216 | None:intergenic |
| CAAGGAGAATTTGAACTCTA+AGG | 0.276155 | 8.3:+9433987 | MS.gene57701:CDS |
| GTTCTGGAGGAGAAGAAATA+AGG | 0.277590 | 8.3:-9433622 | None:intergenic |
| TCAGCATAACCATGCGAAAA+TGG | 0.289824 | 8.3:-9435294 | None:intergenic |
| TACAATCCGACAACCTTAAA+TGG | 0.291396 | 8.3:+9433495 | MS.gene57701:CDS |
| CTCACGAAAATTTAAGATTT+GGG | 0.302792 | 8.3:-9434824 | None:intergenic |
| CGTCGAAGAGGAAACCATTT+AGG | 0.312893 | 8.3:+9434202 | MS.gene57701:CDS |
| TCAGCTTTGAAACAGATTAA+AGG | 0.321217 | 8.3:+9434027 | MS.gene57701:CDS |
| ATGATGGGGTGTTCTTGTTC+TGG | 0.330881 | 8.3:-9433638 | None:intergenic |
| TGTCCAACGCTTTGAGTTGC+CGG | 0.351486 | 8.3:-9435193 | None:intergenic |
| TGAAGGGAAAACTATTCTTA+TGG | 0.353653 | 8.3:+9434134 | MS.gene57701:CDS |
| AGCAATTTCTACAAGAATTC+CGG | 0.363796 | 8.3:+9434942 | MS.gene57701:CDS |
| TGTGCTGGATGTGGTGAAAA+AGG | 0.365765 | 8.3:+9435107 | MS.gene57701:CDS |
| ATTTAGGACTTTGTTTCATA+AGG | 0.394361 | 8.3:+9434218 | MS.gene57701:CDS |
| GAAATGGAAGAGAAATGAAT+TGG | 0.404831 | 8.3:+9434329 | MS.gene57701:CDS |
| TTGCGCTGCTAAGTTCTGTC+TGG | 0.405509 | 8.3:-9434800 | None:intergenic |
| ATGAAGAGTTGAGTAGTAAG+TGG | 0.408973 | 8.3:-9433384 | None:intergenic |
| AAGCTTGTCTCTTATTATGA+TGG | 0.411561 | 8.3:-9433654 | None:intergenic |
| TTTGAAGTTGAAAGGAAGAA+TGG | 0.411584 | 8.3:-9433432 | None:intergenic |
| GGTTTGATGGATTGAAGAAA+TGG | 0.418072 | 8.3:+9434313 | MS.gene57701:CDS |
| TTTGCAAGAGCAGTTGGTGA+TGG | 0.440962 | 8.3:+9434426 | MS.gene57701:CDS |
| CAACTTCTTCTTGATCAACT+TGG | 0.448682 | 8.3:-9434457 | None:intergenic |
| ACAGATTAAAGGAGCAGCTT+CGG | 0.449986 | 8.3:+9434038 | MS.gene57701:CDS |
| TTGTTGCCATTTAAGGTTGT+CGG | 0.459702 | 8.3:-9433501 | None:intergenic |
| TTCTGGAGGAGAAGAAATAA+GGG | 0.465428 | 8.3:-9433621 | None:intergenic |
| AGCTTGTCTCTTATTATGAT+GGG | 0.465581 | 8.3:-9433653 | None:intergenic |
| ACTGCTAACCTTTGCACCAA+TGG | 0.474150 | 8.3:-9433847 | None:intergenic |
| CCATTCTTCTAAAAGGCCAT+TGG | 0.477565 | 8.3:+9433831 | MS.gene57701:CDS |
| GTAGTAAGTGGGTGTGTAGT+TGG | 0.482252 | 8.3:-9433372 | None:intergenic |
| CATAGAGAGGGAAATGGCGG+TGG | 0.484301 | 8.3:+9434243 | MS.gene57701:CDS |
| CTAAAAGGCCATTGGTGCAA+AGG | 0.490692 | 8.3:+9433839 | MS.gene57701:CDS |
| TTTGGGAAACAACATAAAGA+AGG | 0.496221 | 8.3:+9434764 | MS.gene57701:CDS |
| AGGTCATGGTGTGACAAGTA+TGG | 0.503532 | 8.3:+9435078 | MS.gene57701:intron |
| CTATCAGATCTTTGATTCAA+AGG | 0.504322 | 8.3:-9434375 | None:intergenic |
| GACCCATCAAGTTCAAAACT+TGG | 0.504455 | 8.3:-9433535 | None:intergenic |
| TCAAGAGAAAGACATTTGTC+CGG | 0.505669 | 8.3:+9435174 | MS.gene57701:CDS |
| TGGTGATGTTGTGCTGGATG+TGG | 0.505812 | 8.3:+9435098 | MS.gene57701:CDS |
| CAAGTATGGTGATGTTGTGC+TGG | 0.508284 | 8.3:+9435092 | MS.gene57701:CDS |
| TGTAAAAGAGAATTCTGAAG+AGG | 0.508351 | 8.3:+9433921 | MS.gene57701:CDS |
| GTGGTCTGTGATTGATTTGA+AGG | 0.508732 | 8.3:+9433945 | MS.gene57701:CDS |
| CTTTCCTTTGCTGGTTTCGG+AGG | 0.508857 | 8.3:-9434168 | None:intergenic |
| TTGCAAGAGCAGTTGGTGAT+GGG | 0.511642 | 8.3:+9434427 | MS.gene57701:CDS |
| TCACTTTGTTGTTTATGCAA+AGG | 0.511656 | 8.3:-9434114 | None:intergenic |
| GATCTTTGATTCAAAGGCAA+AGG | 0.513475 | 8.3:-9434369 | None:intergenic |
| CCAGCAAAGGAAAGCGGTGG+TGG | 0.520086 | 8.3:+9434177 | MS.gene57701:CDS |
| TTCAAATCAGACTTATCCAC+CGG | 0.525206 | 8.3:-9434961 | None:intergenic |
| AAGGAGCATAGAGAGGGAAA+TGG | 0.536239 | 8.3:+9434237 | MS.gene57701:CDS |
| AAGGAGAATTTGAACTCTAA+GGG | 0.536500 | 8.3:+9433988 | MS.gene57701:CDS |
| AAGAAGAAGTTGCATTCTGA+TGG | 0.539287 | 8.3:+9434468 | MS.gene57701:CDS |
| TGAAGAGTTGAGTAGTAAGT+GGG | 0.543506 | 8.3:-9433383 | None:intergenic |
| CTTTGTTGTTTATGCAAAGG+AGG | 0.546200 | 8.3:-9434111 | None:intergenic |
| TGATAAGAATTTGATGAACA+AGG | 0.549842 | 8.3:+9433969 | MS.gene57701:CDS |
| ATGGTTATGCTGAGAGTACA+TGG | 0.553105 | 8.3:+9435304 | MS.gene57701:CDS |
| TTGATGGGTCTTCACAAAGA+AGG | 0.556368 | 8.3:+9433548 | MS.gene57701:CDS |
| GTGCAAAGGTTAGCAGTACA+AGG | 0.558986 | 8.3:+9433853 | MS.gene57701:CDS |
| GATGCTAGAGATGTGATCGC+AGG | 0.559667 | 8.3:+9433886 | MS.gene57701:CDS |
| GGGAAATGGCGGTGGGTCTG+AGG | 0.563164 | 8.3:+9434251 | MS.gene57701:CDS |
| TGTCCGGCAACTCAAAGCGT+TGG | 0.564089 | 8.3:+9435190 | MS.gene57701:CDS |
| GACAATCTATGTTCAGCAGA+AGG | 0.564751 | 8.3:-9433467 | None:intergenic |
| TTGCATAAACAACAAAGTGA+AGG | 0.566433 | 8.3:+9434117 | MS.gene57701:CDS |
| TTTCATAAGGAGCATAGAGA+GGG | 0.572068 | 8.3:+9434231 | MS.gene57701:CDS |
| TGCATAAACAACAAAGTGAA+GGG | 0.586261 | 8.3:+9434118 | MS.gene57701:CDS |
| TCTAAGGGAAAATCAAGTCA+TGG | 0.589460 | 8.3:+9434003 | MS.gene57701:CDS |
| TGCAAACAGGAATGATCAGA+TGG | 0.595419 | 8.3:+9434918 | MS.gene57701:intron |
| ATGGGGTGTTCTTGTTCTGG+AGG | 0.602140 | 8.3:-9433635 | None:intergenic |
| CCATCAAGTTCAAAACTTGG+TGG | 0.605099 | 8.3:-9433532 | None:intergenic |
| GCTTGTCTCTTATTATGATG+GGG | 0.610177 | 8.3:-9433652 | None:intergenic |
| ATGCTAGAGATGTGATCGCA+GGG | 0.616522 | 8.3:+9433887 | MS.gene57701:CDS |
| GTTTCATAAGGAGCATAGAG+AGG | 0.616807 | 8.3:+9434230 | MS.gene57701:CDS |
| GCGGTGGTGGTTCGTCGAAG+AGG | 0.628194 | 8.3:+9434190 | MS.gene57701:CDS |
| AAGAGAATTCTGAAGAGGAG+TGG | 0.634631 | 8.3:+9433926 | MS.gene57701:CDS |
| AGGGAAAACTATTCTTATGG+AGG | 0.639054 | 8.3:+9434137 | MS.gene57701:CDS |
| CCGAAACCAGCAAAGGAAAG+CGG | 0.649904 | 8.3:+9434171 | MS.gene57701:CDS |
| ATAGAGAGGGAAATGGCGGT+GGG | 0.650035 | 8.3:+9434244 | MS.gene57701:CDS |
| TGAGCCTCCGAAACCAGCAA+AGG | 0.650047 | 8.3:+9434164 | MS.gene57701:CDS |
| CTGAGGTAGAACAAAGAGGA+GGG | 0.655821 | 8.3:+9434268 | MS.gene57701:CDS |
| TCTGAGGTAGAACAAAGAGG+AGG | 0.661547 | 8.3:+9434267 | MS.gene57701:CDS |
| GAATCAAAGATCTGATAGCG+AGG | 0.664604 | 8.3:+9434380 | MS.gene57701:CDS |
| AATTTCTACAAGAATTCCGG+TGG | 0.667726 | 8.3:+9434945 | MS.gene57701:CDS |
| GAGCATAGAGAGGGAAATGG+CGG | 0.674277 | 8.3:+9434240 | MS.gene57701:CDS |
| AAACCAGCAAAGGAAAGCGG+TGG | 0.686736 | 8.3:+9434174 | MS.gene57701:CDS |
| GGGTCTGAGGTAGAACAAAG+AGG | 0.686892 | 8.3:+9434264 | MS.gene57701:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAGCAAAAAGTTAAAAA+TGG | - | chr8.3:9433740-9433759 | None:intergenic | 15.0% |
| !! | TTTGTTTGTGATTTATTAAT+AGG | + | chr8.3:9434740-9434759 | MS.gene57701:intron | 15.0% |
| !!! | ATAAACTTTAAGAACTAAAT+CGG | + | chr8.3:9434643-9434662 | MS.gene57701:intron | 15.0% |
| !!! | CAAACTTTCATATAATTTTA+TGG | + | chr8.3:9434600-9434619 | MS.gene57701:intron | 15.0% |
| !!! | GTTTTTGGTTTTTTATTTTT+TGG | + | chr8.3:9433760-9433779 | MS.gene57701:intron | 15.0% |
| !! | TATCTATGAAAAAATCAGAT+GGG | - | chr8.3:9434497-9434516 | None:intergenic | 20.0% |
| !! | TTATCTATGAAAAAATCAGA+TGG | - | chr8.3:9434498-9434517 | None:intergenic | 20.0% |
| !!! | AACTTTTTGCTTATTGTTTT+TGG | + | chr8.3:9433745-9433764 | MS.gene57701:intron | 20.0% |
| !!! | ATCTGATTTTTTCATAGATA+AGG | + | chr8.3:9434497-9434516 | MS.gene57701:CDS | 20.0% |
| !!! | GTGATTTATTAATAGGTTTT+GGG | + | chr8.3:9434747-9434766 | MS.gene57701:intron | 20.0% |
| !!! | TGTGATTTATTAATAGGTTT+TGG | + | chr8.3:9434746-9434765 | MS.gene57701:intron | 20.0% |
| !!! | TTTATTTTTTGGACCTTATT+AGG | + | chr8.3:9433771-9433790 | MS.gene57701:intron | 20.0% |
| !!! | TTTTCTCATTAAAGTTCATT+TGG | + | chr8.3:9434849-9434868 | MS.gene57701:intron | 20.0% |
| ! | AAGATTACCATTCTTCTAAA+AGG | + | chr8.3:9433824-9433843 | MS.gene57701:CDS | 25.0% |
| ! | AGTTCAATGATGAATTCAAA+GGG | - | chr8.3:9433711-9433730 | None:intergenic | 25.0% |
| ! | ATCTATGAAAAAATCAGATG+GGG | - | chr8.3:9434496-9434515 | None:intergenic | 25.0% |
| ! | TAGTTCAATGATGAATTCAA+AGG | - | chr8.3:9433712-9433731 | None:intergenic | 25.0% |
| ! | TGATAAGAATTTGATGAACA+AGG | + | chr8.3:9433969-9433988 | MS.gene57701:CDS | 25.0% |
| ! | TTATGAAACAAAGTCCTAAA+TGG | - | chr8.3:9434219-9434238 | None:intergenic | 25.0% |
| !! | AACATTGTACTCAACTTTTA+CGG | + | chr8.3:9435021-9435040 | MS.gene57701:intron | 25.0% |
| !! | ACTCACGAAAATTTAAGATT+TGG | - | chr8.3:9434828-9434847 | None:intergenic | 25.0% |
| !! | ATTTAGGACTTTGTTTCATA+AGG | + | chr8.3:9434218-9434237 | MS.gene57701:CDS | 25.0% |
| !! | CTCACGAAAATTTAAGATTT+GGG | - | chr8.3:9434827-9434846 | None:intergenic | 25.0% |
| !! | TTTTGGTCATCAAGATAATT+CGG | + | chr8.3:9435251-9435270 | MS.gene57701:CDS | 25.0% |
| AAATCAGTGAAAAAGCAATG+GGG | + | chr8.3:9434291-9434310 | MS.gene57701:CDS | 30.0% | |
| AAGCTTGTCTCTTATTATGA+TGG | - | chr8.3:9433657-9433676 | None:intergenic | 30.0% | |
| AAGGAGAATTTGAACTCTAA+GGG | + | chr8.3:9433988-9434007 | MS.gene57701:CDS | 30.0% | |
| AGCAATTTCTACAAGAATTC+CGG | + | chr8.3:9434942-9434961 | MS.gene57701:CDS | 30.0% | |
| AGCTTGTCTCTTATTATGAT+GGG | - | chr8.3:9433656-9433675 | None:intergenic | 30.0% | |
| CATGCTAGATTGAAACATAA+TGG | - | chr8.3:9434539-9434558 | None:intergenic | 30.0% | |
| CTATCAGATCTTTGATTCAA+AGG | - | chr8.3:9434378-9434397 | None:intergenic | 30.0% | |
| GAAATCAGTGAAAAAGCAAT+GGG | + | chr8.3:9434290-9434309 | MS.gene57701:CDS | 30.0% | |
| GAAATGGAAGAGAAATGAAT+TGG | + | chr8.3:9434329-9434348 | MS.gene57701:CDS | 30.0% | |
| GAACTAAATCGGATAGTTTA+TGG | + | chr8.3:9434654-9434673 | MS.gene57701:intron | 30.0% | |
| GCATAAAGTAGTTCCTAATA+AGG | - | chr8.3:9433787-9433806 | None:intergenic | 30.0% | |
| TGAAGGGAAAACTATTCTTA+TGG | + | chr8.3:9434134-9434153 | MS.gene57701:CDS | 30.0% | |
| TGCATAAACAACAAAGTGAA+GGG | + | chr8.3:9434118-9434137 | MS.gene57701:CDS | 30.0% | |
| TTGCATAAACAACAAAGTGA+AGG | + | chr8.3:9434117-9434136 | MS.gene57701:CDS | 30.0% | |
| TTTGGGAAACAACATAAAGA+AGG | + | chr8.3:9434764-9434783 | MS.gene57701:CDS | 30.0% | |
| ! | AACGTTCATCCAAATCTTTT+TGG | + | chr8.3:9435234-9435253 | MS.gene57701:CDS | 30.0% |
| ! | AATCCAAAGTTGACTTACTT+AGG | - | chr8.3:9434997-9435016 | None:intergenic | 30.0% |
| ! | ATCCAAAGTTGACTTACTTA+GGG | - | chr8.3:9434996-9435015 | None:intergenic | 30.0% |
| ! | CTAGATTGAAACATAATGGA+AGG | - | chr8.3:9434535-9434554 | None:intergenic | 30.0% |
| ! | TCTTGATGACCAAAAAGATT+TGG | - | chr8.3:9435246-9435265 | None:intergenic | 30.0% |
| ! | TGTAAAAGAGAATTCTGAAG+AGG | + | chr8.3:9433921-9433940 | MS.gene57701:CDS | 30.0% |
| ! | TTTGAAGTTGAAAGGAAGAA+TGG | - | chr8.3:9433435-9433454 | None:intergenic | 30.0% |
| !! | TCACTTTGTTGTTTATGCAA+AGG | - | chr8.3:9434117-9434136 | None:intergenic | 30.0% |
| !! | TCAGCTTTGAAACAGATTAA+AGG | + | chr8.3:9434027-9434046 | MS.gene57701:CDS | 30.0% |
| !! | TTTTCGCTTTGAGCTAATTT+TGG | + | chr8.3:9434700-9434719 | MS.gene57701:intron | 30.0% |
| !!! | GAACGTTTTTTGAAGTTGAA+AGG | - | chr8.3:9433443-9433462 | None:intergenic | 30.0% |
| AAGAAGAAGTTGCATTCTGA+TGG | + | chr8.3:9434468-9434487 | MS.gene57701:CDS | 35.0% | |
| AATCAGTGAAAAAGCAATGG+GGG | + | chr8.3:9434292-9434311 | MS.gene57701:CDS | 35.0% | |
| AATTTCTACAAGAATTCCGG+TGG | + | chr8.3:9434945-9434964 | MS.gene57701:CDS | 35.0% | |
| AGGGAAAACTATTCTTATGG+AGG | + | chr8.3:9434137-9434156 | MS.gene57701:CDS | 35.0% | |
| ATGAAGAGTTGAGTAGTAAG+TGG | - | chr8.3:9433387-9433406 | None:intergenic | 35.0% | |
| CAAAAACCACGTTGAAGAAA+TGG | + | chr8.3:9435134-9435153 | MS.gene57701:CDS | 35.0% | |
| CAACTTCTTCTTGATCAACT+TGG | - | chr8.3:9434460-9434479 | None:intergenic | 35.0% | |
| CAAGGAGAATTTGAACTCTA+AGG | + | chr8.3:9433987-9434006 | MS.gene57701:CDS | 35.0% | |
| GATCTTTGATTCAAAGGCAA+AGG | - | chr8.3:9434372-9434391 | None:intergenic | 35.0% | |
| GCTTGTCTCTTATTATGATG+GGG | - | chr8.3:9433655-9433674 | None:intergenic | 35.0% | |
| GGAAATCAGTGAAAAAGCAA+TGG | + | chr8.3:9434289-9434308 | MS.gene57701:CDS | 35.0% | |
| TACAATCCGACAACCTTAAA+TGG | + | chr8.3:9433495-9433514 | MS.gene57701:CDS | 35.0% | |
| TCAAGAGAAAGACATTTGTC+CGG | + | chr8.3:9435174-9435193 | MS.gene57701:CDS | 35.0% | |
| TCTAAGGGAAAATCAAGTCA+TGG | + | chr8.3:9434003-9434022 | MS.gene57701:CDS | 35.0% | |
| TGAAGAGTTGAGTAGTAAGT+GGG | - | chr8.3:9433386-9433405 | None:intergenic | 35.0% | |
| TTCAAATCAGACTTATCCAC+CGG | - | chr8.3:9434964-9434983 | None:intergenic | 35.0% | |
| TTCCCTAAGTAAGTCAACTT+TGG | + | chr8.3:9434991-9435010 | MS.gene57701:intron | 35.0% | |
| TTCTTGATCAACTTGGTATC+TGG | - | chr8.3:9434453-9434472 | None:intergenic | 35.0% | |
| ! | AACATCAATCCATTTTCGCA+TGG | + | chr8.3:9435285-9435304 | MS.gene57701:CDS | 35.0% |
| ! | TGTTTTCCATTTCTTCAACG+TGG | - | chr8.3:9435143-9435162 | None:intergenic | 35.0% |
| ! | TTCTGGAGGAGAAGAAATAA+GGG | - | chr8.3:9433624-9433643 | None:intergenic | 35.0% |
| ! | TTGTTGCCATTTAAGGTTGT+CGG | - | chr8.3:9433504-9433523 | None:intergenic | 35.0% |
| ! | TTTCATAAGGAGCATAGAGA+GGG | + | chr8.3:9434231-9434250 | MS.gene57701:CDS | 35.0% |
| !! | AAGAATGGTTTTGCAGAAAG+AGG | - | chr8.3:9433420-9433439 | None:intergenic | 35.0% |
| !! | AAGAGTCTTGTTGCCATTTA+AGG | - | chr8.3:9433511-9433530 | None:intergenic | 35.0% |
| !! | CTTTGTTGTTTATGCAAAGG+AGG | - | chr8.3:9434114-9434133 | None:intergenic | 35.0% |
| !! | GGTTTGATGGATTGAAGAAA+TGG | + | chr8.3:9434313-9434332 | MS.gene57701:CDS | 35.0% |
| !!! | CACCAAGTTTTGAACTTGAT+GGG | + | chr8.3:9433533-9433552 | MS.gene57701:CDS | 35.0% |
| AAAAAGCAATGGGGGTTTGA+TGG | + | chr8.3:9434300-9434319 | MS.gene57701:CDS | 40.0% | |
| ACAGATTAAAGGAGCAGCTT+CGG | + | chr8.3:9434038-9434057 | MS.gene57701:CDS | 40.0% | |
| CCATCAAGTTCAAAACTTGG+TGG | - | chr8.3:9433535-9433554 | None:intergenic | 40.0% | |
| GACAATCTATGTTCAGCAGA+AGG | - | chr8.3:9433470-9433489 | None:intergenic | 40.0% | |
| GACCCATCAAGTTCAAAACT+TGG | - | chr8.3:9433538-9433557 | None:intergenic | 40.0% | |
| TCAGCATAACCATGCGAAAA+TGG | - | chr8.3:9435297-9435316 | None:intergenic | 40.0% | |
| TGATCATTCCTGTTTGCACA+CGG | - | chr8.3:9434916-9434935 | None:intergenic | 40.0% | |
| TGCAAACAGGAATGATCAGA+TGG | + | chr8.3:9434918-9434937 | MS.gene57701:intron | 40.0% | |
| TTGTGTGTCTGATGTGTTGA+AGG | + | chr8.3:9435058-9435077 | MS.gene57701:intron | 40.0% | |
| ! | AAGAGAATTCTGAAGAGGAG+TGG | + | chr8.3:9433926-9433945 | MS.gene57701:CDS | 40.0% |
| ! | ATGGTTATGCTGAGAGTACA+TGG | + | chr8.3:9435304-9435323 | MS.gene57701:CDS | 40.0% |
| ! | CCATTCTTCTAAAAGGCCAT+TGG | + | chr8.3:9433831-9433850 | MS.gene57701:CDS | 40.0% |
| ! | GAATCAAAGATCTGATAGCG+AGG | + | chr8.3:9434380-9434399 | MS.gene57701:CDS | 40.0% |
| ! | GTTTCATAAGGAGCATAGAG+AGG | + | chr8.3:9434230-9434249 | MS.gene57701:CDS | 40.0% |
| ! | TTGATGGGTCTTCACAAAGA+AGG | + | chr8.3:9433548-9433567 | MS.gene57701:CDS | 40.0% |
| !! | CCAATGGCCTTTTAGAAGAA+TGG | - | chr8.3:9433834-9433853 | None:intergenic | 40.0% |
| !! | GTGGTCTGTGATTGATTTGA+AGG | + | chr8.3:9433945-9433964 | MS.gene57701:CDS | 40.0% |
| !! | GTTCTGGAGGAGAAGAAATA+AGG | - | chr8.3:9433625-9433644 | None:intergenic | 40.0% |
| !!! | AGACAAGCTTCTGTTTTTGC+AGG | + | chr8.3:9433667-9433686 | MS.gene57701:CDS | 40.0% |
| !!! | CCACCAAGTTTTGAACTTGA+TGG | + | chr8.3:9433532-9433551 | MS.gene57701:CDS | 40.0% |
| AACATTTGCCGTGTGCAAAC+AGG | + | chr8.3:9434905-9434924 | MS.gene57701:intron | 45.0% | |
| ACTGCTAACCTTTGCACCAA+TGG | - | chr8.3:9433850-9433869 | None:intergenic | 45.0% | |
| AGGTCATGGTGTGACAAGTA+TGG | + | chr8.3:9435078-9435097 | MS.gene57701:intron | 45.0% | |
| ATGCTAGAGATGTGATCGCA+GGG | + | chr8.3:9433887-9433906 | MS.gene57701:CDS | 45.0% | |
| CGTCGAAGAGGAAACCATTT+AGG | + | chr8.3:9434202-9434221 | MS.gene57701:CDS | 45.0% | |
| CTAAAAGGCCATTGGTGCAA+AGG | + | chr8.3:9433839-9433858 | MS.gene57701:CDS | 45.0% | |
| CTGAGGTAGAACAAAGAGGA+GGG | + | chr8.3:9434268-9434287 | MS.gene57701:CDS | 45.0% | |
| GTAGTAAGTGGGTGTGTAGT+TGG | - | chr8.3:9433375-9433394 | None:intergenic | 45.0% | |
| GTCTGATGTGTTGAAGGTCA+TGG | + | chr8.3:9435064-9435083 | MS.gene57701:intron | 45.0% | |
| GTGCAAAGGTTAGCAGTACA+AGG | + | chr8.3:9433853-9433872 | MS.gene57701:CDS | 45.0% | |
| TGTGCTGGATGTGGTGAAAA+AGG | + | chr8.3:9435107-9435126 | MS.gene57701:CDS | 45.0% | |
| ! | AAAGGAGCAGCTTCGGTTTT+CGG | + | chr8.3:9434045-9434064 | MS.gene57701:CDS | 45.0% |
| ! | AAGGAGCATAGAGAGGGAAA+TGG | + | chr8.3:9434237-9434256 | MS.gene57701:CDS | 45.0% |
| ! | ATGATGGGGTGTTCTTGTTC+TGG | - | chr8.3:9433641-9433660 | None:intergenic | 45.0% |
| ! | CAAGTATGGTGATGTTGTGC+TGG | + | chr8.3:9435092-9435111 | MS.gene57701:CDS | 45.0% |
| ! | CAGTCTTTTGCAAGAGCAGT+TGG | + | chr8.3:9434420-9434439 | MS.gene57701:CDS | 45.0% |
| ! | TCTGAGGTAGAACAAAGAGG+AGG | + | chr8.3:9434267-9434286 | MS.gene57701:CDS | 45.0% |
| !! | TTGCAAGAGCAGTTGGTGAT+GGG | + | chr8.3:9434427-9434446 | MS.gene57701:CDS | 45.0% |
| !! | TTTGCAAGAGCAGTTGGTGA+TGG | + | chr8.3:9434426-9434445 | MS.gene57701:CDS | 45.0% |
| AAACCAGCAAAGGAAAGCGG+TGG | + | chr8.3:9434174-9434193 | MS.gene57701:CDS | 50.0% | |
| ATAGAGAGGGAAATGGCGGT+GGG | + | chr8.3:9434244-9434263 | MS.gene57701:CDS | 50.0% | |
| CCGAAACCAGCAAAGGAAAG+CGG | + | chr8.3:9434171-9434190 | MS.gene57701:CDS | 50.0% | |
| GAGCATAGAGAGGGAAATGG+CGG | + | chr8.3:9434240-9434259 | MS.gene57701:CDS | 50.0% | |
| GATGCTAGAGATGTGATCGC+AGG | + | chr8.3:9433886-9433905 | MS.gene57701:CDS | 50.0% | |
| TTGCGCTGCTAAGTTCTGTC+TGG | - | chr8.3:9434803-9434822 | None:intergenic | 50.0% | |
| ! | AAGGAGCAGCTTCGGTTTTC+GGG | + | chr8.3:9434046-9434065 | MS.gene57701:CDS | 50.0% |
| ! | ATGGGGTGTTCTTGTTCTGG+AGG | - | chr8.3:9433638-9433657 | None:intergenic | 50.0% |
| ! | GGGTCTGAGGTAGAACAAAG+AGG | + | chr8.3:9434264-9434283 | MS.gene57701:CDS | 50.0% |
| ! | TGGTGATGTTGTGCTGGATG+TGG | + | chr8.3:9435098-9435117 | MS.gene57701:CDS | 50.0% |
| !! | CCGCTTTCCTTTGCTGGTTT+CGG | - | chr8.3:9434174-9434193 | None:intergenic | 50.0% |
| !! | CTTTCCTTTGCTGGTTTCGG+AGG | - | chr8.3:9434171-9434190 | None:intergenic | 50.0% |
| !! | TGTCCAACGCTTTGAGTTGC+CGG | - | chr8.3:9435196-9435215 | None:intergenic | 50.0% |
| CATAGAGAGGGAAATGGCGG+TGG | + | chr8.3:9434243-9434262 | MS.gene57701:CDS | 55.0% | |
| TGAGCCTCCGAAACCAGCAA+AGG | + | chr8.3:9434164-9434183 | MS.gene57701:CDS | 55.0% | |
| TGTCCGGCAACTCAAAGCGT+TGG | + | chr8.3:9435190-9435209 | MS.gene57701:CDS | 55.0% | |
| CCACCACCGCTTTCCTTTGC+TGG | - | chr8.3:9434180-9434199 | None:intergenic | 60.0% | |
| CCAGCAAAGGAAAGCGGTGG+TGG | + | chr8.3:9434177-9434196 | MS.gene57701:CDS | 60.0% | |
| GGGAAATGGCGGTGGGTCTG+AGG | + | chr8.3:9434251-9434270 | MS.gene57701:CDS | 65.0% | |
| ! | GCGGTGGTGGTTCGTCGAAG+AGG | + | chr8.3:9434190-9434209 | MS.gene57701:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 9433362 | 9435332 | 9433362 | ID=MS.gene57701 |
| chr8.3 | mRNA | 9433362 | 9435332 | 9433362 | ID=MS.gene57701.t1;Parent=MS.gene57701 |
| chr8.3 | exon | 9433362 | 9433688 | 9433362 | ID=MS.gene57701.t1.exon1;Parent=MS.gene57701.t1 |
| chr8.3 | CDS | 9433362 | 9433688 | 9433362 | ID=cds.MS.gene57701.t1;Parent=MS.gene57701.t1 |
| chr8.3 | exon | 9433793 | 9434518 | 9433793 | ID=MS.gene57701.t1.exon2;Parent=MS.gene57701.t1 |
| chr8.3 | CDS | 9433793 | 9434518 | 9433793 | ID=cds.MS.gene57701.t1;Parent=MS.gene57701.t1 |
| chr8.3 | exon | 9434762 | 9434841 | 9434762 | ID=MS.gene57701.t1.exon3;Parent=MS.gene57701.t1 |
| chr8.3 | CDS | 9434762 | 9434841 | 9434762 | ID=cds.MS.gene57701.t1;Parent=MS.gene57701.t1 |
| chr8.3 | exon | 9434927 | 9434998 | 9434927 | ID=MS.gene57701.t1.exon4;Parent=MS.gene57701.t1 |
| chr8.3 | CDS | 9434927 | 9434998 | 9434927 | ID=cds.MS.gene57701.t1;Parent=MS.gene57701.t1 |
| chr8.3 | exon | 9435080 | 9435332 | 9435080 | ID=MS.gene57701.t1.exon5;Parent=MS.gene57701.t1 |
| chr8.3 | CDS | 9435080 | 9435332 | 9435080 | ID=cds.MS.gene57701.t1;Parent=MS.gene57701.t1 |
| Gene Sequence |
| Protein sequence |
