Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60205.t1 | XP_003608530.1 | 90.6 | 468 | 23 | 4 | 40 | 489 | 1 | 465 | 1.40E-256 | 895.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60205.t1 | G7JE26 | 90.6 | 468 | 23 | 4 | 40 | 489 | 1 | 465 | 9.8e-257 | 895.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene60205 | -0.818728 | 1.68E-52 | -1.69E-46 |
| MS.gene050170 | MS.gene60205 | -0.832604 | 8.60E-56 | -1.69E-46 |
| MS.gene050323 | MS.gene60205 | -0.823487 | 1.35E-53 | -1.69E-46 |
| MS.gene050496 | MS.gene60205 | -0.827618 | 1.42E-54 | -1.69E-46 |
| MS.gene050612 | MS.gene60205 | -0.807956 | 3.92E-50 | -1.69E-46 |
| MS.gene050675 | MS.gene60205 | -0.80407 | 2.58E-49 | -1.69E-46 |
| MS.gene050697 | MS.gene60205 | -0.813454 | 2.54E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene60205 | -0.845375 | 4.22E-59 | -1.69E-46 |
| MS.gene050871 | MS.gene60205 | -0.847533 | 1.09E-59 | -1.69E-46 |
| MS.gene05104 | MS.gene60205 | 0.802126 | 6.50E-49 | -1.69E-46 |
| MS.gene051138 | MS.gene60205 | 0.807124 | 5.89E-50 | -1.69E-46 |
| MS.gene051268 | MS.gene60205 | -0.818776 | 1.64E-52 | -1.69E-46 |
| MS.gene051863 | MS.gene60205 | 0.819047 | 1.43E-52 | -1.69E-46 |
| MS.gene053203 | MS.gene60205 | -0.814376 | 1.59E-51 | -1.69E-46 |
| MS.gene053479 | MS.gene60205 | -0.807004 | 6.25E-50 | -1.69E-46 |
| MS.gene054706 | MS.gene60205 | 0.814568 | 1.44E-51 | -1.69E-46 |
| MS.gene05589 | MS.gene60205 | -0.827671 | 1.38E-54 | -1.69E-46 |
| MS.gene056387 | MS.gene60205 | -0.854091 | 1.55E-61 | -1.69E-46 |
| MS.gene056504 | MS.gene60205 | -0.83768 | 4.51E-57 | -1.69E-46 |
| MS.gene056688 | MS.gene60205 | 0.801368 | 9.31E-49 | -1.69E-46 |
| MS.gene057086 | MS.gene60205 | -0.825299 | 5.06E-54 | -1.69E-46 |
| MS.gene058099 | MS.gene60205 | 0.819064 | 1.41E-52 | -1.69E-46 |
| MS.gene058157 | MS.gene60205 | -0.808106 | 3.64E-50 | -1.69E-46 |
| MS.gene058171 | MS.gene60205 | 0.828229 | 1.01E-54 | -1.69E-46 |
| MS.gene058173 | MS.gene60205 | 0.829556 | 4.82E-55 | -1.69E-46 |
| MS.gene058175 | MS.gene60205 | 0.833304 | 5.76E-56 | -1.69E-46 |
| MS.gene059045 | MS.gene60205 | 0.814078 | 1.85E-51 | -1.69E-46 |
| MS.gene059223 | MS.gene60205 | 0.810238 | 1.27E-50 | -1.69E-46 |
| MS.gene059699 | MS.gene60205 | 0.816805 | 4.58E-52 | -1.69E-46 |
| MS.gene059703 | MS.gene60205 | 0.824323 | 8.59E-54 | -1.69E-46 |
| MS.gene059865 | MS.gene60205 | -0.830208 | 3.34E-55 | -1.69E-46 |
| MS.gene06000 | MS.gene60205 | -0.849691 | 2.75E-60 | -1.69E-46 |
| MS.gene060778 | MS.gene60205 | -0.834736 | 2.52E-56 | -1.69E-46 |
| MS.gene060982 | MS.gene60205 | -0.830755 | 2.46E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60205.t1 | MTR_4g097110 | 89.316 | 468 | 29 | 4 | 40 | 489 | 1 | 465 | 0.0 | 857 |
| MS.gene60205.t1 | MTR_5g015460 | 66.176 | 476 | 130 | 9 | 40 | 490 | 1 | 470 | 0.0 | 645 |
| MS.gene60205.t1 | MTR_5g015460 | 72.019 | 411 | 105 | 4 | 85 | 490 | 62 | 467 | 0.0 | 639 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60205.t1 | AT3G49880 | 65.217 | 460 | 137 | 7 | 42 | 483 | 4 | 458 | 0.0 | 612 |
| MS.gene60205.t1 | AT5G67540 | 63.169 | 467 | 131 | 9 | 51 | 483 | 34 | 493 | 0.0 | 595 |
| MS.gene60205.t1 | AT5G67540 | 63.169 | 467 | 131 | 9 | 51 | 483 | 12 | 471 | 0.0 | 595 |
| MS.gene60205.t1 | AT5G67540 | 66.901 | 426 | 128 | 6 | 64 | 483 | 48 | 466 | 0.0 | 595 |
Find 102 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCAGCTGAGACAATCTT+AGG | 0.186965 | 8.1:-25460626 | MS.gene60205:CDS |
| AAATTTCAAATACTTATTAT+TGG | 0.207042 | 8.1:-25462034 | MS.gene60205:CDS |
| TCCTGGTTTGTTTATCTTCA+TGG | 0.221019 | 8.1:-25460501 | MS.gene60205:CDS |
| ACTGCTACCCTGGGAGAATT+TGG | 0.230166 | 8.1:-25462112 | MS.gene60205:CDS |
| GCTATTCTTCTAAGGATCTA+TGG | 0.248673 | 8.1:-25461129 | MS.gene60205:CDS |
| TTGCAACGAAAATTCGTAAT+TGG | 0.249294 | 8.1:+25462479 | None:intergenic |
| ACCATTGGTTGATGAATTCT+TGG | 0.278506 | 8.1:-25462234 | MS.gene60205:CDS |
| TTTCAACTTGTTGGAGTTGA+TGG | 0.278724 | 8.1:+25462318 | None:intergenic |
| AGTCAACCATGGTTGCAATT+TGG | 0.279964 | 8.1:+25462703 | None:intergenic |
| GGCCAAGAGTTTCTATCTAT+TGG | 0.280101 | 8.1:-25460367 | MS.gene60205:CDS |
| TTCTCATTGTAAATAACTTT+TGG | 0.283365 | 8.1:+25461022 | None:intergenic |
| CTTCCTTTACCTAAGTTTCC+TGG | 0.285443 | 8.1:-25460518 | MS.gene60205:CDS |
| TTTGATATCCATGCGGTCTT+TGG | 0.289529 | 8.1:+25460888 | None:intergenic |
| AGTTGGTTGCTATTCTTCTA+AGG | 0.296029 | 8.1:-25461137 | MS.gene60205:CDS |
| ACACTCACCTGGAACTTTAT+AGG | 0.333849 | 8.1:+25462648 | None:intergenic |
| ATTGATCCAATGAAGACTAT+AGG | 0.340719 | 8.1:-25462161 | MS.gene60205:CDS |
| CCTTTCCCTATAGTCTTCAT+TGG | 0.349246 | 8.1:+25462155 | None:intergenic |
| GAAGATCAAGCACTTCAATA+TGG | 0.356355 | 8.1:-25460407 | MS.gene60205:CDS |
| CTCCATCAGGTGGACATTAT+AGG | 0.359766 | 8.1:-25461160 | MS.gene60205:intron |
| ATTCTCTCCTATAAAGTTCC+AGG | 0.361333 | 8.1:-25462655 | MS.gene60205:intron |
| TGGTTGCCTTTGATTGTTGA+TGG | 0.375658 | 8.1:-25460434 | MS.gene60205:CDS |
| TTATCTTCATGGCGGATAGA+TGG | 0.376808 | 8.1:-25460490 | MS.gene60205:CDS |
| TAAGAGATTCAAGATATGTT+TGG | 0.401561 | 8.1:-25460454 | MS.gene60205:CDS |
| TTGATCCAATGAAGACTATA+GGG | 0.410737 | 8.1:-25462160 | MS.gene60205:CDS |
| CTTGAATCTCTTAACTCACT+TGG | 0.414129 | 8.1:+25460464 | None:intergenic |
| CCTTTGTGTTTGAACATAGC+CGG | 0.433704 | 8.1:+25460707 | None:intergenic |
| TCAAATACTTATTATTGGTA+TGG | 0.434316 | 8.1:-25462029 | MS.gene60205:CDS |
| AGGAGGATGAATGATATTGA+AGG | 0.445423 | 8.1:+25462358 | None:intergenic |
| TTAGGGACATGGGAAACAAT+TGG | 0.448046 | 8.1:-25460608 | MS.gene60205:CDS |
| TTATTATGAGCAAGGTAAGT+AGG | 0.456459 | 8.1:+25461990 | None:intergenic |
| TGGCTACCAAGGTATTTGAA+TGG | 0.456566 | 8.1:+25460908 | None:intergenic |
| ATTGCGGATTGATCTGCCCT+CGG | 0.466490 | 8.1:+25462726 | None:intergenic |
| ATAAACAAACCAGGAAACTT+AGG | 0.469675 | 8.1:+25460509 | None:intergenic |
| CACCCTCCATGAGCTTGAAT+AGG | 0.470225 | 8.1:+25462071 | None:intergenic |
| AGTTATAATTACTGCTACCC+TGG | 0.470470 | 8.1:-25462122 | MS.gene60205:CDS |
| TCAACTCCAACAAGTTGAAA+AGG | 0.485321 | 8.1:-25462315 | MS.gene60205:CDS |
| TTGCGGATTGATCTGCCCTC+GGG | 0.491491 | 8.1:+25462727 | None:intergenic |
| ACATATTACATGGTTACATC+AGG | 0.501941 | 8.1:-25460683 | MS.gene60205:CDS |
| GTCCTTTGTTATTATGAGCA+AGG | 0.505074 | 8.1:+25461982 | None:intergenic |
| GGAAATCCTATTCAAGCTCA+TGG | 0.506131 | 8.1:-25462077 | MS.gene60205:CDS |
| CAGGTGGACATTATAGGAGT+TGG | 0.509259 | 8.1:-25461154 | MS.gene60205:CDS |
| CTACCCTGGGAGAATTTGGT+TGG | 0.510007 | 8.1:-25462108 | MS.gene60205:CDS |
| GAATGAACAAGTGCTTCATT+TGG | 0.511215 | 8.1:+25460644 | None:intergenic |
| ATGGTTACATCAGGTTGCAC+TGG | 0.512390 | 8.1:-25460674 | MS.gene60205:CDS |
| GACCGCATGGATATCAAAGC+CGG | 0.513956 | 8.1:-25460883 | MS.gene60205:CDS |
| AATGGAAACTGCCTTTGGGT+TGG | 0.518583 | 8.1:-25460337 | MS.gene60205:CDS |
| CATGGTTGCAATTTGGATTG+CGG | 0.521291 | 8.1:+25462710 | None:intergenic |
| CTGAGACAATCTTAGGGACA+TGG | 0.522359 | 8.1:-25460619 | MS.gene60205:CDS |
| TTACATCAGGTTGCACTGGA+TGG | 0.529710 | 8.1:-25460670 | MS.gene60205:CDS |
| TATTATGAGCAAGGTAAGTA+GGG | 0.532830 | 8.1:+25461991 | None:intergenic |
| AAACCAGGAAACTTAGGTAA+AGG | 0.536263 | 8.1:+25460515 | None:intergenic |
| TACATCAGGTTGCACTGGAT+GGG | 0.537898 | 8.1:-25460669 | MS.gene60205:CDS |
| CTTTGAAAAGTGTCATGTCC+CGG | 0.538558 | 8.1:+25460864 | None:intergenic |
| AGAATTTGGTTGGATACTGA+TGG | 0.538862 | 8.1:-25462098 | MS.gene60205:CDS |
| CGCAATCCAAATTGCAACCA+TGG | 0.539159 | 8.1:-25462709 | MS.gene60205:CDS |
| GGTGTTATTGACTTGCTTTG+AGG | 0.541852 | 8.1:+25462254 | None:intergenic |
| TGCCAATAGATAGAAACTCT+TGG | 0.542445 | 8.1:+25460365 | None:intergenic |
| TGGAAATGAGAAGGAAGAGA+AGG | 0.543749 | 8.1:+25462338 | None:intergenic |
| TGGTATGGTGAATATAAAGA+TGG | 0.548966 | 8.1:-25462014 | MS.gene60205:CDS |
| AAATGAGAAGGAAGAGAAGG+AGG | 0.550677 | 8.1:+25462341 | None:intergenic |
| TCATGTCCATCAACAATCAA+AGG | 0.551449 | 8.1:+25460428 | None:intergenic |
| ATTGGAAATCCATGTGTTGG+TGG | 0.555806 | 8.1:-25460590 | MS.gene60205:CDS |
| AAGCAAGTCAATAACACCAT+TGG | 0.559003 | 8.1:-25462249 | MS.gene60205:CDS |
| ATTCAGCTGAGACAATCTTA+GGG | 0.560376 | 8.1:-25460625 | MS.gene60205:CDS |
| TGAAAGTGACTTACACGAGC+AGG | 0.561123 | 8.1:+25461960 | None:intergenic |
| CTTCTAAGGATCTATGGACC+TGG | 0.567240 | 8.1:-25461123 | MS.gene60205:CDS |
| ATAGGAGAGAATGAATGAGT+TGG | 0.575613 | 8.1:+25462666 | None:intergenic |
| GTTATAATTACTGCTACCCT+GGG | 0.579486 | 8.1:-25462121 | MS.gene60205:CDS |
| GTATCCAACCAAATTCTCCC+AGG | 0.580663 | 8.1:+25462104 | None:intergenic |
| ACCGGTCCATTCAAATACCT+TGG | 0.583019 | 8.1:-25460914 | MS.gene60205:CDS |
| TTGAGATAATCTTCAGTCAA+GGG | 0.584839 | 8.1:+25460779 | None:intergenic |
| ACCAAGGTATTTGAATGGAC+CGG | 0.587941 | 8.1:+25460913 | None:intergenic |
| AGGATGAATGATATTGAAGG+AGG | 0.591474 | 8.1:+25462361 | None:intergenic |
| TTGAATGTGTTCCAACCCAA+AGG | 0.592407 | 8.1:+25460326 | None:intergenic |
| ATTGAGATAATCTTCAGTCA+AGG | 0.592919 | 8.1:+25460778 | None:intergenic |
| GAAAACAATGTAATGCACAT+TGG | 0.594015 | 8.1:-25460803 | MS.gene60205:CDS |
| ACCGCATGGATATCAAAGCC+GGG | 0.595132 | 8.1:-25460882 | MS.gene60205:CDS |
| CGGTCAGCGAAGAGAAGCGC+CGG | 0.596526 | 8.1:-25460726 | MS.gene60205:CDS |
| CATGCGGTCTTTGGCTACCA+AGG | 0.596927 | 8.1:+25460897 | None:intergenic |
| GCATTCAGTGATACTCCTAC+CGG | 0.598208 | 8.1:-25460932 | MS.gene60205:CDS |
| CCAATGAAGACTATAGGGAA+AGG | 0.603987 | 8.1:-25462155 | MS.gene60205:CDS |
| TACCTTGCTCATAATAACAA+AGG | 0.607221 | 8.1:-25461984 | MS.gene60205:CDS |
| ACACAAAGGAACATATTACA+TGG | 0.610656 | 8.1:-25460693 | MS.gene60205:CDS |
| ATCCTATTCAAGCTCATGGA+GGG | 0.611296 | 8.1:-25462073 | MS.gene60205:CDS |
| CTTGGTAGCCAAAGACCGCA+TGG | 0.613799 | 8.1:-25460896 | MS.gene60205:CDS |
| AAACAAGAAAGTATGTGATG+TGG | 0.618490 | 8.1:-25461000 | MS.gene60205:CDS |
| TGAGACAATCTTAGGGACAT+GGG | 0.620421 | 8.1:-25460618 | MS.gene60205:CDS |
| TCCAAGAATTCATCAACCAA+TGG | 0.620834 | 8.1:+25462233 | None:intergenic |
| ATCACTGAATGCTATGCCGA+CGG | 0.621301 | 8.1:+25460943 | None:intergenic |
| TGGAGTTGATGGAAATGAGA+AGG | 0.629494 | 8.1:+25462329 | None:intergenic |
| ACAATTGGAAATCCATGTGT+TGG | 0.635790 | 8.1:-25460593 | MS.gene60205:CDS |
| TGGTTTGTTTATCTTCATGG+CGG | 0.648154 | 8.1:-25460498 | MS.gene60205:CDS |
| TATTGTTGAGTAGTCAACCA+TGG | 0.662866 | 8.1:+25462692 | None:intergenic |
| AGTGAATGTCATCAAACCCG+AGG | 0.663758 | 8.1:-25462743 | None:intergenic |
| AGGTATTTGAATGGACCGGT+AGG | 0.664578 | 8.1:+25460917 | None:intergenic |
| GTGAATGTCATCAAACCCGA+GGG | 0.664885 | 8.1:-25462742 | None:intergenic |
| TATCCAACCAAATTCTCCCA+GGG | 0.669311 | 8.1:+25462105 | None:intergenic |
| CCGGCTATGTTCAAACACAA+AGG | 0.678714 | 8.1:-25460707 | MS.gene60205:CDS |
| AATTACGCAAAAGCTTCCGT+CGG | 0.686419 | 8.1:-25460959 | MS.gene60205:CDS |
| AATCCTATTCAAGCTCATGG+AGG | 0.687704 | 8.1:-25462074 | MS.gene60205:CDS |
| GCCATGAAGATAAACAAACC+AGG | 0.690008 | 8.1:+25460500 | None:intergenic |
| TCCCGGCTTTGATATCCATG+CGG | 0.711426 | 8.1:+25460881 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTCAAATACTTATTAT+TGG | - | chr8.1:25461026-25461045 | MS.gene60205:CDS | 10.0% |
| !! | GTAAAATGTAAGTTATAATA+AGG | + | chr8.1:25461320-25461339 | None:intergenic | 15.0% |
| !! | ATGAAAAGAACATTTGATAT+GGG | + | chr8.1:25461462-25461481 | None:intergenic | 20.0% |
| !! | TAACATACTTCTATAACAAA+AGG | + | chr8.1:25461342-25461361 | None:intergenic | 20.0% |
| !! | TATGTCACTAGTAATAATAT+GGG | - | chr8.1:25460625-25460644 | MS.gene60205:CDS | 20.0% |
| !! | TCAAATACTTATTATTGGTA+TGG | - | chr8.1:25461031-25461050 | MS.gene60205:CDS | 20.0% |
| !!! | ATTAAGTTGTTTATTCAATC+AGG | - | chr8.1:25461391-25461410 | MS.gene60205:intron | 20.0% |
| !!! | TTAAGTTGTTTATTCAATCA+GGG | - | chr8.1:25461392-25461411 | MS.gene60205:intron | 20.0% |
| !!! | TTCTCATTGTAAATAACTTT+TGG | + | chr8.1:25462041-25462060 | None:intergenic | 20.0% |
| ! | AACCATAAGAAACTTTGAAT+TGG | + | chr8.1:25461485-25461504 | None:intergenic | 25.0% |
| ! | ATATGGGGTTTATTAATCTT+AGG | - | chr8.1:25460641-25460660 | MS.gene60205:CDS | 25.0% |
| ! | ATCCAATTCAAAGTTTCTTA+TGG | - | chr8.1:25461480-25461499 | MS.gene60205:intron | 25.0% |
| ! | ATGTCACTAGTAATAATATG+GGG | - | chr8.1:25460626-25460645 | MS.gene60205:CDS | 25.0% |
| ! | CCAAAAACTTCAATTGATAA+TGG | + | chr8.1:25461705-25461724 | None:intergenic | 25.0% |
| ! | CTATCTATTGGCATAAAAAA+TGG | - | chr8.1:25462705-25462724 | MS.gene60205:CDS | 25.0% |
| ! | CTATGTCACTAGTAATAATA+TGG | - | chr8.1:25460624-25460643 | MS.gene60205:CDS | 25.0% |
| ! | GATGAAAAGAACATTTGATA+TGG | + | chr8.1:25461463-25461482 | None:intergenic | 25.0% |
| ! | GGAAATTGTATTTGTTTCAT+AGG | - | chr8.1:25461728-25461747 | MS.gene60205:intron | 25.0% |
| ! | TAAGAGATTCAAGATATGTT+TGG | - | chr8.1:25462606-25462625 | MS.gene60205:intron | 25.0% |
| !! | ATCAAATGCAAATACTGTTT+TGG | - | chr8.1:25461846-25461865 | MS.gene60205:intron | 25.0% |
| !! | CCATTATCAATTGAAGTTTT+TGG | - | chr8.1:25461702-25461721 | MS.gene60205:intron | 25.0% |
| !!! | AAAACTTCAATTGATAATGG+TGG | + | chr8.1:25461702-25461721 | None:intergenic | 25.0% |
| !!! | ATGGTTTTGATAACACATTT+TGG | - | chr8.1:25462672-25462691 | MS.gene60205:CDS | 25.0% |
| !!! | CTTATTTTTATAAGCTCTTC+AGG | - | chr8.1:25461278-25461297 | MS.gene60205:intron | 25.0% |
| AAAAAATGGAAACTGCCTTT+GGG | - | chr8.1:25462719-25462738 | MS.gene60205:CDS | 30.0% | |
| AAAGCATATACACATGTCAT+AGG | + | chr8.1:25461249-25461268 | None:intergenic | 30.0% | |
| ACACAAAGGAACATATTACA+TGG | - | chr8.1:25462367-25462386 | MS.gene60205:CDS | 30.0% | |
| ACATATTACATGGTTACATC+AGG | - | chr8.1:25462377-25462396 | MS.gene60205:CDS | 30.0% | |
| ATAAACAAACCAGGAAACTT+AGG | + | chr8.1:25462554-25462573 | None:intergenic | 30.0% | |
| ATTGAGATAATCTTCAGTCA+AGG | + | chr8.1:25462285-25462304 | None:intergenic | 30.0% | |
| ATTGATCCAATGAAGACTAT+AGG | - | chr8.1:25460899-25460918 | MS.gene60205:CDS | 30.0% | |
| CTTATCTACTGACATGAATA+CGG | - | chr8.1:25461191-25461210 | MS.gene60205:intron | 30.0% | |
| GAAAACAATGTAATGCACAT+TGG | - | chr8.1:25462257-25462276 | MS.gene60205:CDS | 30.0% | |
| TAAAAAATGGAAACTGCCTT+TGG | - | chr8.1:25462718-25462737 | MS.gene60205:CDS | 30.0% | |
| TACCTTGCTCATAATAACAA+AGG | - | chr8.1:25461076-25461095 | MS.gene60205:CDS | 30.0% | |
| TATTATGAGCAAGGTAAGTA+GGG | + | chr8.1:25461072-25461091 | None:intergenic | 30.0% | |
| TGGTATGGTGAATATAAAGA+TGG | - | chr8.1:25461046-25461065 | MS.gene60205:CDS | 30.0% | |
| TTATCTACTGACATGAATAC+GGG | - | chr8.1:25461192-25461211 | MS.gene60205:intron | 30.0% | |
| TTATTATGAGCAAGGTAAGT+AGG | + | chr8.1:25461073-25461092 | None:intergenic | 30.0% | |
| TTGAGATAATCTTCAGTCAA+GGG | + | chr8.1:25462284-25462303 | None:intergenic | 30.0% | |
| TTGATCCAATGAAGACTATA+GGG | - | chr8.1:25460900-25460919 | MS.gene60205:CDS | 30.0% | |
| TTGCAACGAAAATTCGTAAT+TGG | + | chr8.1:25460584-25460603 | None:intergenic | 30.0% | |
| TTTGTTTCATAGGACTAATG+TGG | - | chr8.1:25461738-25461757 | MS.gene60205:intron | 30.0% | |
| ! | AAACAAGAAAGTATGTGATG+TGG | - | chr8.1:25462060-25462079 | MS.gene60205:CDS | 30.0% |
| ! | GTCATGAAAAGAATTTTCGT+CGG | - | chr8.1:25462314-25462333 | MS.gene60205:CDS | 30.0% |
| ! | TGAGATATAGACTAGAGTTT+TGG | + | chr8.1:25461872-25461891 | None:intergenic | 30.0% |
| !!! | ATCAATTGAAGTTTTTGGCA+GGG | - | chr8.1:25461707-25461726 | MS.gene60205:intron | 30.0% |
| !!! | TACAATACCTTCTTTTTTCC+AGG | + | chr8.1:25461958-25461977 | None:intergenic | 30.0% |
| !!! | TATCAATTGAAGTTTTTGGC+AGG | - | chr8.1:25461706-25461725 | MS.gene60205:intron | 30.0% |
| !!! | TCAATAGCACTTGTTTTATG+AGG | + | chr8.1:25460884-25460903 | None:intergenic | 30.0% |
| AAACCAGGAAACTTAGGTAA+AGG | + | chr8.1:25462548-25462567 | None:intergenic | 35.0% | |
| AAGCAAGTCAATAACACCAT+TGG | - | chr8.1:25460811-25460830 | MS.gene60205:CDS | 35.0% | |
| ACAATTGGAAATCCATGTGT+TGG | - | chr8.1:25462467-25462486 | MS.gene60205:intron | 35.0% | |
| AGAATTTGGTTGGATACTGA+TGG | - | chr8.1:25460962-25460981 | MS.gene60205:CDS | 35.0% | |
| AGACATTGGAATTGCTCAAT+TGG | + | chr8.1:25461651-25461670 | None:intergenic | 35.0% | |
| AGGAGGATGAATGATATTGA+AGG | + | chr8.1:25460705-25460724 | None:intergenic | 35.0% | |
| AGGATGAATGATATTGAAGG+AGG | + | chr8.1:25460702-25460721 | None:intergenic | 35.0% | |
| AGTTATAATTACTGCTACCC+TGG | - | chr8.1:25460938-25460957 | MS.gene60205:CDS | 35.0% | |
| ATAGGAGAGAATGAATGAGT+TGG | + | chr8.1:25460397-25460416 | None:intergenic | 35.0% | |
| ATTCAGCTGAGACAATCTTA+GGG | - | chr8.1:25462435-25462454 | MS.gene60205:intron | 35.0% | |
| ATTCTCTCCTATAAAGTTCC+AGG | - | chr8.1:25460405-25460424 | MS.gene60205:CDS | 35.0% | |
| CTTGAATCTCTTAACTCACT+TGG | + | chr8.1:25462599-25462618 | None:intergenic | 35.0% | |
| GAAGATCAAGCACTTCAATA+TGG | - | chr8.1:25462653-25462672 | MS.gene60205:intron | 35.0% | |
| GAATGAACAAGTGCTTCATT+TGG | + | chr8.1:25462419-25462438 | None:intergenic | 35.0% | |
| GTTATAATTACTGCTACCCT+GGG | - | chr8.1:25460939-25460958 | MS.gene60205:CDS | 35.0% | |
| TAGTTCAGAACTCAAGACAT+TGG | + | chr8.1:25461665-25461684 | None:intergenic | 35.0% | |
| TATAAACTCCTACAACCAAC+TGG | + | chr8.1:25461430-25461449 | None:intergenic | 35.0% | |
| TATTGTTGAGTAGTCAACCA+TGG | + | chr8.1:25460371-25460390 | None:intergenic | 35.0% | |
| TCATGTCCATCAACAATCAA+AGG | + | chr8.1:25462635-25462654 | None:intergenic | 35.0% | |
| TCCAAGAATTCATCAACCAA+TGG | + | chr8.1:25460830-25460849 | None:intergenic | 35.0% | |
| TGCCAATAGATAGAAACTCT+TGG | + | chr8.1:25462698-25462717 | None:intergenic | 35.0% | |
| TGTAGAGCTTGAGAAAAATG+AGG | - | chr8.1:25460537-25460556 | MS.gene60205:CDS | 35.0% | |
| ! | AGTTCTCCTTTTCAACTTGT+TGG | + | chr8.1:25460754-25460773 | None:intergenic | 35.0% |
| ! | AGTTGGTTGCTATTCTTCTA+AGG | - | chr8.1:25461923-25461942 | MS.gene60205:intron | 35.0% |
| ! | GCTATTCTTCTAAGGATCTA+TGG | - | chr8.1:25461931-25461950 | MS.gene60205:intron | 35.0% |
| ! | TCAACTCCAACAAGTTGAAA+AGG | - | chr8.1:25460745-25460764 | MS.gene60205:CDS | 35.0% |
| !! | ACCATTGGTTGATGAATTCT+TGG | - | chr8.1:25460826-25460845 | MS.gene60205:CDS | 35.0% |
| !! | ATTTTGTTTCCACCAACACA+TGG | + | chr8.1:25462482-25462501 | None:intergenic | 35.0% |
| !! | GTCCTTTGTTATTATGAGCA+AGG | + | chr8.1:25461081-25461100 | None:intergenic | 35.0% |
| !! | TCAATTGATAATGGTGGTGA+TGG | + | chr8.1:25461696-25461715 | None:intergenic | 35.0% |
| !! | TCCTGGTTTGTTTATCTTCA+TGG | - | chr8.1:25462559-25462578 | MS.gene60205:intron | 35.0% |
| !! | TGGTTTGTTTATCTTCATGG+CGG | - | chr8.1:25462562-25462581 | MS.gene60205:intron | 35.0% |
| !! | TTTCAACTTGTTGGAGTTGA+TGG | + | chr8.1:25460745-25460764 | None:intergenic | 35.0% |
| AAATGAGAAGGAAGAGAAGG+AGG | + | chr8.1:25460722-25460741 | None:intergenic | 40.0% | |
| AATCCTATTCAAGCTCATGG+AGG | - | chr8.1:25460986-25461005 | MS.gene60205:CDS | 40.0% | |
| AATTACGCAAAAGCTTCCGT+CGG | - | chr8.1:25462101-25462120 | MS.gene60205:CDS | 40.0% | |
| ACACTCACCTGGAACTTTAT+AGG | + | chr8.1:25460415-25460434 | None:intergenic | 40.0% | |
| ACATGTCTAGATAGCTAGCT+TGG | + | chr8.1:25461607-25461626 | None:intergenic | 40.0% | |
| AGTCAACCATGGTTGCAATT+TGG | + | chr8.1:25460360-25460379 | None:intergenic | 40.0% | |
| ATCCTATTCAAGCTCATGGA+GGG | - | chr8.1:25460987-25461006 | MS.gene60205:CDS | 40.0% | |
| ATTGGAAATCCATGTGTTGG+TGG | - | chr8.1:25462470-25462489 | MS.gene60205:intron | 40.0% | |
| CATGGTTGCAATTTGGATTG+CGG | + | chr8.1:25460353-25460372 | None:intergenic | 40.0% | |
| CATTCAGCTGAGACAATCTT+AGG | - | chr8.1:25462434-25462453 | MS.gene60205:intron | 40.0% | |
| CCAATGAAGACTATAGGGAA+AGG | - | chr8.1:25460905-25460924 | MS.gene60205:CDS | 40.0% | |
| CCTTTCCCTATAGTCTTCAT+TGG | + | chr8.1:25460908-25460927 | None:intergenic | 40.0% | |
| CCTTTGTGTTTGAACATAGC+CGG | + | chr8.1:25462356-25462375 | None:intergenic | 40.0% | |
| CTATGGACCTGGAAAAAAGA+AGG | - | chr8.1:25461948-25461967 | MS.gene60205:intron | 40.0% | |
| CTTCCTTTACCTAAGTTTCC+TGG | - | chr8.1:25462542-25462561 | MS.gene60205:intron | 40.0% | |
| GCCATGAAGATAAACAAACC+AGG | + | chr8.1:25462563-25462582 | None:intergenic | 40.0% | |
| GGAAATCCTATTCAAGCTCA+TGG | - | chr8.1:25460983-25461002 | MS.gene60205:CDS | 40.0% | |
| GGCCAAGAGTTTCTATCTAT+TGG | - | chr8.1:25462693-25462712 | MS.gene60205:CDS | 40.0% | |
| TATCCAACCAAATTCTCCCA+GGG | + | chr8.1:25460958-25460977 | None:intergenic | 40.0% | |
| TGAGACAATCTTAGGGACAT+GGG | - | chr8.1:25462442-25462461 | MS.gene60205:intron | 40.0% | |
| TGGAAATGAGAAGGAAGAGA+AGG | + | chr8.1:25460725-25460744 | None:intergenic | 40.0% | |
| TGGTTGCCTTTGATTGTTGA+TGG | - | chr8.1:25462626-25462645 | MS.gene60205:intron | 40.0% | |
| TTAGGGACATGGGAAACAAT+TGG | - | chr8.1:25462452-25462471 | MS.gene60205:intron | 40.0% | |
| TTGAATGTGTTCCAACCCAA+AGG | + | chr8.1:25462737-25462756 | None:intergenic | 40.0% | |
| TTTGATATCCATGCGGTCTT+TGG | + | chr8.1:25462175-25462194 | None:intergenic | 40.0% | |
| ! | ACCAAGGTATTTGAATGGAC+CGG | + | chr8.1:25462150-25462169 | None:intergenic | 40.0% |
| ! | AGCTAGCTTGGGGAAAATAA+GGG | + | chr8.1:25461595-25461614 | None:intergenic | 40.0% |
| ! | ATGTCTAGATAGCTAGCTTG+GGG | + | chr8.1:25461605-25461624 | None:intergenic | 40.0% |
| ! | CATGTCTAGATAGCTAGCTT+GGG | + | chr8.1:25461606-25461625 | None:intergenic | 40.0% |
| ! | TAGCTAGCTTGGGGAAAATA+AGG | + | chr8.1:25461596-25461615 | None:intergenic | 40.0% |
| ! | TGAGGTGACCTCTTTTTGTT+TGG | + | chr8.1:25460791-25460810 | None:intergenic | 40.0% |
| ! | TGGCTACCAAGGTATTTGAA+TGG | + | chr8.1:25462155-25462174 | None:intergenic | 40.0% |
| ! | TTTTGGTCTCTCAAGCACAT+TGG | + | chr8.1:25462024-25462043 | None:intergenic | 40.0% |
| !! | CTTTGAAAAGTGTCATGTCC+CGG | + | chr8.1:25462199-25462218 | None:intergenic | 40.0% |
| !! | GGTGTTATTGACTTGCTTTG+AGG | + | chr8.1:25460809-25460828 | None:intergenic | 40.0% |
| !! | GTGACCTCTTTTTGTTTGGT+GGG | + | chr8.1:25460787-25460806 | None:intergenic | 40.0% |
| !! | TGACCTCTTTTTGTTTGGTG+GGG | + | chr8.1:25460786-25460805 | None:intergenic | 40.0% |
| !! | TGGAGTTGATGGAAATGAGA+AGG | + | chr8.1:25460734-25460753 | None:intergenic | 40.0% |
| !! | TTATCTTCATGGCGGATAGA+TGG | - | chr8.1:25462570-25462589 | MS.gene60205:intron | 40.0% |
| !!! | GTTTCGAGTTTCGACTTTTC+TGG | - | chr8.1:25462502-25462521 | MS.gene60205:CDS | 40.0% |
| AACTCCTACAACCAACTGGT+AGG | + | chr8.1:25461426-25461445 | None:intergenic | 45.0% | |
| AATGGAAACTGCCTTTGGGT+TGG | - | chr8.1:25462723-25462742 | MS.gene60205:CDS | 45.0% | |
| ACCGGTCCATTCAAATACCT+TGG | - | chr8.1:25462146-25462165 | MS.gene60205:CDS | 45.0% | |
| AGACTATCTGAGAGAGCTCA+TGG | - | chr8.1:25461217-25461236 | MS.gene60205:intron | 45.0% | |
| AGGTATTTGAATGGACCGGT+AGG | + | chr8.1:25462146-25462165 | None:intergenic | 45.0% | |
| ATCACTGAATGCTATGCCGA+CGG | + | chr8.1:25462120-25462139 | None:intergenic | 45.0% | |
| CAGGTGGACATTATAGGAGT+TGG | - | chr8.1:25461906-25461925 | MS.gene60205:intron | 45.0% | |
| CATTAGAAGACACACTCACC+TGG | + | chr8.1:25460426-25460445 | None:intergenic | 45.0% | |
| CCGGCTATGTTCAAACACAA+AGG | - | chr8.1:25462353-25462372 | MS.gene60205:CDS | 45.0% | |
| CGCAATCCAAATTGCAACCA+TGG | - | chr8.1:25460351-25460370 | MS.gene60205:CDS | 45.0% | |
| CTCCATCAGGTGGACATTAT+AGG | - | chr8.1:25461900-25461919 | MS.gene60205:intron | 45.0% | |
| CTCCTATAATGTCCACCTGA+TGG | + | chr8.1:25461905-25461924 | None:intergenic | 45.0% | |
| CTGAGACAATCTTAGGGACA+TGG | - | chr8.1:25462441-25462460 | MS.gene60205:intron | 45.0% | |
| GCATTCAGTGATACTCCTAC+CGG | - | chr8.1:25462128-25462147 | MS.gene60205:CDS | 45.0% | |
| GTATCCAACCAAATTCTCCC+AGG | + | chr8.1:25460959-25460978 | None:intergenic | 45.0% | |
| TCTCACAATGTCTCTCCATC+AGG | - | chr8.1:25461887-25461906 | MS.gene60205:intron | 45.0% | |
| TGAAAGTGACTTACACGAGC+AGG | + | chr8.1:25461103-25461122 | None:intergenic | 45.0% | |
| ! | AATTTTCGTTGCAACGCTGG+AGG | - | chr8.1:25460590-25460609 | MS.gene60205:CDS | 45.0% |
| ! | ACGAATTTTCGTTGCAACGC+TGG | - | chr8.1:25460587-25460606 | MS.gene60205:CDS | 45.0% |
| ! | ATGGTTACATCAGGTTGCAC+TGG | - | chr8.1:25462386-25462405 | MS.gene60205:CDS | 45.0% |
| ! | CTTCTAAGGATCTATGGACC+TGG | - | chr8.1:25461937-25461956 | MS.gene60205:intron | 45.0% |
| ! | GACGGAAGCTTTTGCGTAAT+TGG | + | chr8.1:25462102-25462121 | None:intergenic | 45.0% |
| ! | TACATCAGGTTGCACTGGAT+GGG | - | chr8.1:25462391-25462410 | MS.gene60205:CDS | 45.0% |
| ! | TTACATCAGGTTGCACTGGA+TGG | - | chr8.1:25462390-25462409 | MS.gene60205:CDS | 45.0% |
| !! | ACCTCTTTTTGTTTGGTGGG+GGG | + | chr8.1:25460784-25460803 | None:intergenic | 45.0% |
| !! | GACCTCTTTTTGTTTGGTGG+GGG | + | chr8.1:25460785-25460804 | None:intergenic | 45.0% |
| !! | GGTGACCTCTTTTTGTTTGG+TGG | + | chr8.1:25460788-25460807 | None:intergenic | 45.0% |
| !! | TTTTGTTTGGTGGGGGGATT+TGG | + | chr8.1:25460778-25460797 | None:intergenic | 45.0% |
| ACCGCATGGATATCAAAGCC+GGG | - | chr8.1:25462178-25462197 | MS.gene60205:CDS | 50.0% | |
| ACTGCTACCCTGGGAGAATT+TGG | - | chr8.1:25460948-25460967 | MS.gene60205:CDS | 50.0% | |
| CACAATGTCTCTCCATCAGG+TGG | - | chr8.1:25461890-25461909 | MS.gene60205:intron | 50.0% | |
| CACCCTCCATGAGCTTGAAT+AGG | + | chr8.1:25460992-25461011 | None:intergenic | 50.0% | |
| CTACCCTGGGAGAATTTGGT+TGG | - | chr8.1:25460952-25460971 | MS.gene60205:CDS | 50.0% | |
| GACCGCATGGATATCAAAGC+CGG | - | chr8.1:25462177-25462196 | MS.gene60205:CDS | 50.0% | |
| GCATCCTACCAGTTGGTTGT+AGG | - | chr8.1:25461419-25461438 | MS.gene60205:intron | 50.0% | |
| TCCCCCCACCAAACAAAAAG+AGG | - | chr8.1:25460780-25460799 | MS.gene60205:CDS | 50.0% | |
| ! | ATTGCGGATTGATCTGCCCT+CGG | + | chr8.1:25460337-25460356 | None:intergenic | 50.0% |
| ! | TCCCGGCTTTGATATCCATG+CGG | + | chr8.1:25462182-25462201 | None:intergenic | 50.0% |
| CATGCGGTCTTTGGCTACCA+AGG | + | chr8.1:25462166-25462185 | None:intergenic | 55.0% | |
| GGGCTAAGCATCCTACCAGT+TGG | - | chr8.1:25461412-25461431 | MS.gene60205:intron | 55.0% | |
| ! | CTTGGTAGCCAAAGACCGCA+TGG | - | chr8.1:25462164-25462183 | MS.gene60205:CDS | 55.0% |
| ! | TTGCGGATTGATCTGCCCTC+GGG | + | chr8.1:25460336-25460355 | None:intergenic | 55.0% |
| ! | CGGTCAGCGAAGAGAAGCGC+CGG | - | chr8.1:25462334-25462353 | MS.gene60205:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 25460322 | 25462760 | 25460322 | ID=MS.gene60205 |
| chr8.1 | mRNA | 25460322 | 25462760 | 25460322 | ID=MS.gene60205.t1;Parent=MS.gene60205 |
| chr8.1 | exon | 25462656 | 25462760 | 25462656 | ID=MS.gene60205.t1.exon1;Parent=MS.gene60205.t1 |
| chr8.1 | CDS | 25462656 | 25462760 | 25462656 | ID=cds.MS.gene60205.t1;Parent=MS.gene60205.t1 |
| chr8.1 | exon | 25462471 | 25462540 | 25462471 | ID=MS.gene60205.t1.exon2;Parent=MS.gene60205.t1 |
| chr8.1 | CDS | 25462471 | 25462540 | 25462471 | ID=cds.MS.gene60205.t1;Parent=MS.gene60205.t1 |
| chr8.1 | exon | 25461974 | 25462419 | 25461974 | ID=MS.gene60205.t1.exon3;Parent=MS.gene60205.t1 |
| chr8.1 | CDS | 25461974 | 25462419 | 25461974 | ID=cds.MS.gene60205.t1;Parent=MS.gene60205.t1 |
| chr8.1 | exon | 25460322 | 25461173 | 25460322 | ID=MS.gene60205.t1.exon4;Parent=MS.gene60205.t1 |
| chr8.1 | CDS | 25460322 | 25461173 | 25460322 | ID=cds.MS.gene60205.t1;Parent=MS.gene60205.t1 |
| Gene Sequence |
| Protein sequence |
