Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60368.t1 | KEH31843.1 | 84.1 | 271 | 7 | 1 | 1 | 235 | 1 | 271 | 4.50E-120 | 440.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60368.t1 | Q9FJJ3 | 34.7 | 222 | 91 | 5 | 68 | 242 | 70 | 284 | 6.2e-25 | 115.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60368.t1 | A0A072UPT7 | 84.1 | 271 | 7 | 1 | 1 | 235 | 1 | 271 | 3.3e-120 | 440.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene60368 | 0.847359 | 1.22E-59 | -1.69E-46 |
| MS.gene049983 | MS.gene60368 | 0.817372 | 3.41E-52 | -1.69E-46 |
| MS.gene04998 | MS.gene60368 | 0.800019 | 1.75E-48 | -1.69E-46 |
| MS.gene050084 | MS.gene60368 | 0.839471 | 1.55E-57 | -1.69E-46 |
| MS.gene050085 | MS.gene60368 | 0.842417 | 2.62E-58 | -1.69E-46 |
| MS.gene050359 | MS.gene60368 | 0.859165 | 5.00E-63 | -1.69E-46 |
| MS.gene050379 | MS.gene60368 | 0.806937 | 6.45E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene60368 | 0.826729 | 2.31E-54 | -1.69E-46 |
| MS.gene050654 | MS.gene60368 | 0.836626 | 8.38E-57 | -1.69E-46 |
| MS.gene050931 | MS.gene60368 | 0.801443 | 8.98E-49 | -1.69E-46 |
| MS.gene051043 | MS.gene60368 | 0.810008 | 1.43E-50 | -1.69E-46 |
| MS.gene051184 | MS.gene60368 | 0.814986 | 1.17E-51 | -1.69E-46 |
| MS.gene051209 | MS.gene60368 | 0.822889 | 1.86E-53 | -1.69E-46 |
| MS.gene051541 | MS.gene60368 | 0.802604 | 5.18E-49 | -1.69E-46 |
| MS.gene052118 | MS.gene60368 | 0.816306 | 5.92E-52 | -1.69E-46 |
| MS.gene052609 | MS.gene60368 | 0.805928 | 1.05E-49 | -1.69E-46 |
| MS.gene053215 | MS.gene60368 | 0.811594 | 6.48E-51 | -1.69E-46 |
| MS.gene053726 | MS.gene60368 | 0.81109 | 8.33E-51 | -1.69E-46 |
| MS.gene053879 | MS.gene60368 | 0.806652 | 7.41E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene60368 | 0.850914 | 1.25E-60 | -1.69E-46 |
| MS.gene054893 | MS.gene60368 | 0.854011 | 1.63E-61 | -1.69E-46 |
| MS.gene054957 | MS.gene60368 | 0.80536 | 1.39E-49 | -1.69E-46 |
| MS.gene056097 | MS.gene60368 | 0.800613 | 1.33E-48 | -1.69E-46 |
| MS.gene05615 | MS.gene60368 | 0.811423 | 7.05E-51 | -1.69E-46 |
| MS.gene057174 | MS.gene60368 | 0.842371 | 2.69E-58 | -1.69E-46 |
| MS.gene057622 | MS.gene60368 | 0.842744 | 2.14E-58 | -1.69E-46 |
| MS.gene058095 | MS.gene60368 | 0.828022 | 1.13E-54 | -1.69E-46 |
| MS.gene058292 | MS.gene60368 | 0.826049 | 3.36E-54 | -1.69E-46 |
| MS.gene058429 | MS.gene60368 | 0.843242 | 1.58E-58 | -1.69E-46 |
| MS.gene059007 | MS.gene60368 | 0.845858 | 3.12E-59 | -1.69E-46 |
| MS.gene05952 | MS.gene60368 | 0.821524 | 3.86E-53 | -1.69E-46 |
| MS.gene060259 | MS.gene60368 | 0.816772 | 4.66E-52 | -1.69E-46 |
| MS.gene060522 | MS.gene60368 | 0.805551 | 1.26E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene60368 | 0.831884 | 1.30E-55 | -1.69E-46 |
| MS.gene060937 | MS.gene60368 | 0.802904 | 4.50E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60368.t1 | MTR_4g105740 | 84.133 | 271 | 7 | 1 | 1 | 235 | 1 | 271 | 5.48e-164 | 456 |
| MS.gene60368.t1 | MTR_4g105740 | 84.133 | 271 | 7 | 1 | 1 | 235 | 1 | 271 | 1.50e-163 | 455 |
| MS.gene60368.t1 | MTR_3g077870 | 40.000 | 280 | 114 | 7 | 13 | 242 | 15 | 290 | 6.58e-57 | 184 |
| MS.gene60368.t1 | MTR_8g088250 | 31.381 | 239 | 114 | 5 | 43 | 235 | 19 | 253 | 1.03e-30 | 115 |
| MS.gene60368.t1 | MTR_1g112330 | 29.008 | 262 | 110 | 7 | 46 | 235 | 273 | 530 | 2.15e-25 | 104 |
| MS.gene60368.t1 | MTR_1g112330 | 28.679 | 265 | 110 | 7 | 46 | 235 | 273 | 533 | 4.88e-25 | 103 |
| MS.gene60368.t1 | MTR_5g032190 | 37.013 | 154 | 65 | 2 | 114 | 235 | 373 | 526 | 2.30e-24 | 101 |
| MS.gene60368.t1 | MTR_1g112330 | 33.696 | 184 | 75 | 5 | 46 | 186 | 273 | 452 | 4.13e-24 | 100 |
| MS.gene60368.t1 | MTR_5g032190 | 55.556 | 72 | 32 | 0 | 114 | 185 | 373 | 444 | 1.66e-22 | 95.9 |
| MS.gene60368.t1 | MTR_5g032190 | 55.556 | 72 | 32 | 0 | 114 | 185 | 373 | 444 | 1.84e-22 | 95.9 |
| MS.gene60368.t1 | MTR_5g029580 | 32.237 | 152 | 79 | 2 | 106 | 233 | 163 | 314 | 5.31e-22 | 93.6 |
| MS.gene60368.t1 | MTR_7g011550 | 30.939 | 181 | 78 | 4 | 46 | 182 | 249 | 426 | 7.92e-20 | 88.2 |
| MS.gene60368.t1 | MTR_7g011880 | 33.333 | 111 | 66 | 2 | 114 | 220 | 60 | 166 | 3.16e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60368.t1 | AT5G62520 | 34.685 | 222 | 91 | 5 | 68 | 242 | 70 | 284 | 3.53e-32 | 119 |
| MS.gene60368.t1 | AT1G23550 | 30.213 | 235 | 113 | 3 | 48 | 235 | 56 | 286 | 3.46e-31 | 117 |
| MS.gene60368.t1 | AT3G47720 | 34.685 | 222 | 88 | 7 | 68 | 242 | 78 | 289 | 2.16e-28 | 110 |
| MS.gene60368.t1 | AT1G70440 | 39.669 | 121 | 65 | 2 | 115 | 235 | 162 | 274 | 3.38e-24 | 98.6 |
| MS.gene60368.t1 | AT1G70440 | 39.669 | 121 | 65 | 2 | 115 | 235 | 162 | 274 | 3.38e-24 | 98.6 |
| MS.gene60368.t1 | AT1G32230 | 33.136 | 169 | 78 | 2 | 102 | 235 | 369 | 537 | 5.52e-24 | 100 |
| MS.gene60368.t1 | AT1G32230 | 32.738 | 168 | 79 | 2 | 102 | 235 | 369 | 536 | 2.46e-23 | 98.6 |
| MS.gene60368.t1 | AT1G32230 | 32.738 | 168 | 79 | 2 | 102 | 235 | 369 | 536 | 2.93e-23 | 98.2 |
| MS.gene60368.t1 | AT1G32230 | 32.738 | 168 | 79 | 2 | 102 | 235 | 369 | 536 | 2.93e-23 | 98.2 |
| MS.gene60368.t1 | AT1G32230 | 32.738 | 168 | 79 | 2 | 102 | 235 | 369 | 536 | 2.93e-23 | 98.2 |
| MS.gene60368.t1 | AT1G32230 | 32.738 | 168 | 79 | 2 | 102 | 235 | 369 | 536 | 2.93e-23 | 98.2 |
| MS.gene60368.t1 | AT5G62520 | 33.962 | 159 | 61 | 3 | 68 | 182 | 70 | 228 | 4.64e-22 | 91.7 |
| MS.gene60368.t1 | AT2G35510 | 43.373 | 83 | 47 | 0 | 102 | 184 | 363 | 445 | 4.66e-20 | 89.0 |
| MS.gene60368.t1 | AT2G35510 | 43.373 | 83 | 47 | 0 | 102 | 184 | 363 | 445 | 5.64e-20 | 89.0 |
| MS.gene60368.t1 | AT2G35510 | 43.373 | 83 | 47 | 0 | 102 | 184 | 363 | 445 | 5.64e-20 | 89.0 |
Find 67 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAACTCATAACATATTC+AGG | 0.280626 | 8.2:+19354214 | None:intergenic |
| ACTCCAAACAATGAACTCTT+TGG | 0.300883 | 8.2:+19354261 | None:intergenic |
| AAACGAATCTGCTTCGGATT+AGG | 0.308031 | 8.2:+19354867 | None:intergenic |
| TCGTGTGATCATGGGAAAAT+TGG | 0.321394 | 8.2:-19354362 | MS.gene60368:CDS |
| CCAAGTTTCACAAGGAGTAT+AGG | 0.324583 | 8.2:-19353963 | MS.gene60368:CDS |
| CTCCCAAAGAGTTCATTGTT+TGG | 0.353473 | 8.2:-19354264 | MS.gene60368:CDS |
| AGAGTCGGGAATTGCATAAA+AGG | 0.360107 | 8.2:+19354036 | None:intergenic |
| CAAGTTTCACAAGGAGTATA+GGG | 0.369249 | 8.2:-19353962 | MS.gene60368:CDS |
| CCTATACTCCTTGTGAAACT+TGG | 0.373522 | 8.2:+19353963 | None:intergenic |
| AGTTCAGAAGAATATGATTC+TGG | 0.386842 | 8.2:-19354304 | MS.gene60368:CDS |
| CAAGTACACAATACCTTTGT+CGG | 0.414967 | 8.2:+19354183 | None:intergenic |
| CTCCAAACAATGAACTCTTT+GGG | 0.417033 | 8.2:+19354262 | None:intergenic |
| TAGGGTAAGTGTTTCGGACT+TGG | 0.417634 | 8.2:-19353944 | MS.gene60368:CDS |
| TCGTCTTCCGAACTATCCTT+CGG | 0.427547 | 8.2:+19354909 | None:intergenic |
| TGTTTCGGTAAATTGTAGAT+TGG | 0.431614 | 8.2:+19355001 | None:intergenic |
| TTTGTAGGACATGAGAAGGT+TGG | 0.436670 | 8.2:-19354090 | MS.gene60368:intron |
| AACCACAAACGAATCTGCTT+CGG | 0.446185 | 8.2:+19354861 | None:intergenic |
| TCGCCGGCGGAATCATGTTT+CGG | 0.448520 | 8.2:+19354986 | None:intergenic |
| CGTCTTCCGAACTATCCTTC+GGG | 0.448830 | 8.2:+19354910 | None:intergenic |
| CTGAAAATCGCTACTCCATA+GGG | 0.455210 | 8.2:+19354818 | None:intergenic |
| GTTGCTTTGTCGTGTGATCA+TGG | 0.459584 | 8.2:-19354371 | MS.gene60368:CDS |
| CCTGAAAATCGCTACTCCAT+AGG | 0.467324 | 8.2:+19354817 | None:intergenic |
| CATGAGAAGGTTGGAGTTGG+AGG | 0.468737 | 8.2:-19354081 | MS.gene60368:CDS |
| TTTCAGGAATCCTTGTAAAA+CGG | 0.475306 | 8.2:-19354801 | MS.gene60368:CDS |
| ATCCGAAGCAGATTCGTTTG+TGG | 0.477453 | 8.2:-19354863 | MS.gene60368:CDS |
| GGACATGAGAAGGTTGGAGT+TGG | 0.482722 | 8.2:-19354084 | MS.gene60368:CDS |
| AAATTGGAGGCTGTGCCTGC+AGG | 0.495226 | 8.2:-19354346 | MS.gene60368:CDS |
| ACGATTCCCGAAGGATAGTT+CGG | 0.498656 | 8.2:-19354916 | MS.gene60368:CDS |
| GGATGCGACACTCTCGCAAT+CGG | 0.504460 | 8.2:+19354946 | None:intergenic |
| GGAGTATAGGGTAAGTGTTT+CGG | 0.506827 | 8.2:-19353950 | MS.gene60368:CDS |
| TTCAAACTTGCTTCCGACAA+AGG | 0.516614 | 8.2:-19354196 | MS.gene60368:intron |
| GCGCAAGGGTTGAAACCCTA+TGG | 0.518787 | 8.2:-19354833 | MS.gene60368:CDS |
| GAATCCTTGTAAAACGGTAA+TGG | 0.521351 | 8.2:-19354795 | MS.gene60368:CDS |
| CCTTCGGGAATCGTGGCCGC+CGG | 0.528283 | 8.2:+19354925 | None:intergenic |
| CTCCTTGTGAAACTTGGCAA+TGG | 0.542921 | 8.2:+19353969 | None:intergenic |
| TTGCTTTGTCGTGTGATCAT+GGG | 0.546121 | 8.2:-19354370 | MS.gene60368:CDS |
| GATTGCGAGAGTGTCGCATC+CGG | 0.547181 | 8.2:-19354944 | MS.gene60368:CDS |
| AGAACTGTTGTTGACGAACA+AGG | 0.547451 | 8.2:-19354406 | MS.gene60368:CDS |
| AAAGCGCAGAAATCAGAGTC+GGG | 0.547882 | 8.2:+19354022 | None:intergenic |
| GTTTGTGGTTTAAGTGCGCA+AGG | 0.554303 | 8.2:-19354848 | MS.gene60368:CDS |
| AATCGCTGATTCATCTTCGC+CGG | 0.558062 | 8.2:+19354970 | None:intergenic |
| AATTGCATAAAAGGCGAAGA+CGG | 0.562424 | 8.2:+19354045 | None:intergenic |
| GCAATGGAAACAATATCAGA+TGG | 0.571537 | 8.2:+19353985 | None:intergenic |
| GAATCATATTCTTCTGAACT+CGG | 0.573273 | 8.2:+19354307 | None:intergenic |
| CTGCGTTGATCAGAACCTGC+AGG | 0.581877 | 8.2:+19354331 | None:intergenic |
| CGCTGATTCATCTTCGCCGG+CGG | 0.587670 | 8.2:+19354973 | None:intergenic |
| TGTGATCATGGGAAAATTGG+AGG | 0.591354 | 8.2:-19354359 | MS.gene60368:CDS |
| CGGTGGCTAAAATGCGCGGT+GGG | 0.591716 | 8.2:-19354733 | MS.gene60368:CDS |
| TGCGAGAGTGTCGCATCCGG+CGG | 0.593829 | 8.2:-19354941 | MS.gene60368:CDS |
| TTCCATTGCCAAGTTTCACA+AGG | 0.602302 | 8.2:-19353971 | MS.gene60368:CDS |
| TTTGTGGTTTAAGTGCGCAA+GGG | 0.604517 | 8.2:-19354847 | MS.gene60368:CDS |
| ATGAGAAGGTTGGAGTTGGA+GGG | 0.604737 | 8.2:-19354080 | MS.gene60368:CDS |
| TTACCGAAACATGATTCCGC+CGG | 0.606830 | 8.2:-19354989 | MS.gene60368:CDS |
| TGAGATCTTCGCACGTGCGG+TGG | 0.607606 | 8.2:-19354750 | MS.gene60368:CDS |
| CCGGCGGCCACGATTCCCGA+AGG | 0.617069 | 8.2:-19354925 | MS.gene60368:CDS |
| ATAGTTCGGAAGACGACGGA+GGG | 0.618356 | 8.2:-19354902 | MS.gene60368:CDS |
| CGTGCGGTGGCTAAAATGCG+CGG | 0.622389 | 8.2:-19354737 | MS.gene60368:CDS |
| GAAAGCGCAGAAATCAGAGT+CGG | 0.626070 | 8.2:+19354021 | None:intergenic |
| GAACTATCCTTCGGGAATCG+TGG | 0.630182 | 8.2:+19354918 | None:intergenic |
| GATAGTTCGGAAGACGACGG+AGG | 0.630672 | 8.2:-19354903 | MS.gene60368:CDS |
| GTTTGAGATCTTCGCACGTG+CGG | 0.658246 | 8.2:-19354753 | MS.gene60368:CDS |
| AAACGGTAATGGCACAAGCG+AGG | 0.659734 | 8.2:-19354784 | MS.gene60368:CDS |
| GCGGTGGCTAAAATGCGCGG+TGG | 0.662286 | 8.2:-19354734 | MS.gene60368:CDS |
| AGAAGAATATGATTCTGGAG+TGG | 0.669225 | 8.2:-19354299 | MS.gene60368:CDS |
| ATGGAAACAATATCAGATGG+AGG | 0.669944 | 8.2:+19353988 | None:intergenic |
| AAGGATAGTTCGGAAGACGA+CGG | 0.711418 | 8.2:-19354906 | MS.gene60368:CDS |
| ATGCTAATGTGAAACACGTG+TGG | 0.770185 | 8.2:-19354709 | MS.gene60368:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAATTAACTTTACTTAA+TGG | - | chr8.2:19354417-19354436 | MS.gene60368:intron | 15.0% |
| !!! | TTTCAGATTTATTTTTTGTT+TGG | - | chr8.2:19354835-19354854 | MS.gene60368:CDS | 15.0% |
| !! | ATTAACTTTACTTAATGGTT+AGG | - | chr8.2:19354422-19354441 | MS.gene60368:intron | 20.0% |
| !! | ATTGTTGATATTATTCAACA+CGG | - | chr8.2:19354287-19354306 | MS.gene60368:CDS | 20.0% |
| !! | TTAACTTTACTTAATGGTTA+GGG | - | chr8.2:19354423-19354442 | MS.gene60368:intron | 20.0% |
| !!! | TATTTTTTGTTTGGTTTTGT+AGG | - | chr8.2:19354844-19354863 | MS.gene60368:CDS | 20.0% |
| !!! | TTGTTGTGTTTTTGTTATTA+GGG | - | chr8.2:19354806-19354825 | MS.gene60368:CDS | 20.0% |
| !!! | TTTGTTGTGTTTTTGTTATT+AGG | - | chr8.2:19354805-19354824 | MS.gene60368:CDS | 20.0% |
| ! | TTGAAACTCATAACATATTC+AGG | + | chr8.2:19354738-19354757 | None:intergenic | 25.0% |
| AGTTCAGAAGAATATGATTC+TGG | - | chr8.2:19354645-19354664 | MS.gene60368:intron | 30.0% | |
| GAATCATATTCTTCTGAACT+CGG | + | chr8.2:19354645-19354664 | None:intergenic | 30.0% | |
| TGTTTCGGTAAATTGTAGAT+TGG | + | chr8.2:19353951-19353970 | None:intergenic | 30.0% | |
| TTTCAGGAATCCTTGTAAAA+CGG | - | chr8.2:19354148-19354167 | MS.gene60368:intron | 30.0% | |
| TTTGGTTATGTTCATAGCAA+TGG | - | chr8.2:19354311-19354330 | MS.gene60368:CDS | 30.0% | |
| ! | GATATTATTCAACACGGTTT+TGG | - | chr8.2:19354293-19354312 | MS.gene60368:CDS | 30.0% |
| AATTGCATAAAAGGCGAAGA+CGG | + | chr8.2:19354907-19354926 | None:intergenic | 35.0% | |
| ACTCCAAACAATGAACTCTT+TGG | + | chr8.2:19354691-19354710 | None:intergenic | 35.0% | |
| ATGGAAACAATATCAGATGG+AGG | + | chr8.2:19354964-19354983 | None:intergenic | 35.0% | |
| CAAGTACACAATACCTTTGT+CGG | + | chr8.2:19354769-19354788 | None:intergenic | 35.0% | |
| CTCCAAACAATGAACTCTTT+GGG | + | chr8.2:19354690-19354709 | None:intergenic | 35.0% | |
| GAATCCTTGTAAAACGGTAA+TGG | - | chr8.2:19354154-19354173 | MS.gene60368:intron | 35.0% | |
| GCAATGGAAACAATATCAGA+TGG | + | chr8.2:19354967-19354986 | None:intergenic | 35.0% | |
| ! | AGAAGAATATGATTCTGGAG+TGG | - | chr8.2:19354650-19354669 | MS.gene60368:intron | 35.0% |
| ! | CAAGTTTCACAAGGAGTATA+GGG | - | chr8.2:19354987-19355006 | MS.gene60368:CDS | 35.0% |
| ! | TTGTTGACGAACAAGGTTTT+AGG | - | chr8.2:19354550-19354569 | MS.gene60368:intron | 35.0% |
| AAACGAATCTGCTTCGGATT+AGG | + | chr8.2:19354085-19354104 | None:intergenic | 40.0% | |
| AACCACAAACGAATCTGCTT+CGG | + | chr8.2:19354091-19354110 | None:intergenic | 40.0% | |
| AATGTGAAACACGTGTGGTA+CGG | - | chr8.2:19354245-19354264 | MS.gene60368:CDS | 40.0% | |
| AGAACTGTTGTTGACGAACA+AGG | - | chr8.2:19354543-19354562 | MS.gene60368:intron | 40.0% | |
| AGAGTCGGGAATTGCATAAA+AGG | + | chr8.2:19354916-19354935 | None:intergenic | 40.0% | |
| ATGCTAATGTGAAACACGTG+TGG | - | chr8.2:19354240-19354259 | MS.gene60368:CDS | 40.0% | |
| ATTAACTCGTGCCTTTCAAG+TGG | + | chr8.2:19354362-19354381 | None:intergenic | 40.0% | |
| CAAACGATTCTCCACTTGAA+AGG | - | chr8.2:19354348-19354367 | MS.gene60368:CDS | 40.0% | |
| CCTATACTCCTTGTGAAACT+TGG | + | chr8.2:19354989-19355008 | None:intergenic | 40.0% | |
| CTCCCAAAGAGTTCATTGTT+TGG | - | chr8.2:19354685-19354704 | MS.gene60368:intron | 40.0% | |
| CTGAAAATCGCTACTCCATA+GGG | + | chr8.2:19354134-19354153 | None:intergenic | 40.0% | |
| GGAGTATAGGGTAAGTGTTT+CGG | - | chr8.2:19354999-19355018 | MS.gene60368:CDS | 40.0% | |
| TCGTGTGATCATGGGAAAAT+TGG | - | chr8.2:19354587-19354606 | MS.gene60368:intron | 40.0% | |
| TGTGATCATGGGAAAATTGG+AGG | - | chr8.2:19354590-19354609 | MS.gene60368:intron | 40.0% | |
| TTCCATTGCCAAGTTTCACA+AGG | - | chr8.2:19354978-19354997 | MS.gene60368:CDS | 40.0% | |
| TTGCTTTGTCGTGTGATCAT+GGG | - | chr8.2:19354579-19354598 | MS.gene60368:intron | 40.0% | |
| TTTGTAGGACATGAGAAGGT+TGG | - | chr8.2:19354859-19354878 | MS.gene60368:CDS | 40.0% | |
| TTTGTGGTTTAAGTGCGCAA+GGG | - | chr8.2:19354102-19354121 | MS.gene60368:intron | 40.0% | |
| ! | CCAAGTTTCACAAGGAGTAT+AGG | - | chr8.2:19354986-19355005 | MS.gene60368:CDS | 40.0% |
| ! | CTTTCAAGTGGAGAATCGTT+TGG | + | chr8.2:19354350-19354369 | None:intergenic | 40.0% |
| ! | TGTGTACTTGTGTGTTGTTG+TGG | - | chr8.2:19354779-19354798 | MS.gene60368:CDS | 40.0% |
| ! | TTCAAACTTGCTTCCGACAA+AGG | - | chr8.2:19354753-19354772 | MS.gene60368:CDS | 40.0% |
| !! | TGTGCCATTACCGTTTTACA+AGG | + | chr8.2:19354161-19354180 | None:intergenic | 40.0% |
| !!! | TGGTTTTGTAGGACATGAGA+AGG | - | chr8.2:19354855-19354874 | MS.gene60368:CDS | 40.0% |
| AAAGCGCAGAAATCAGAGTC+GGG | + | chr8.2:19354930-19354949 | None:intergenic | 45.0% | |
| AAGGATAGTTCGGAAGACGA+CGG | - | chr8.2:19354043-19354062 | MS.gene60368:CDS | 45.0% | |
| ACGATTCCCGAAGGATAGTT+CGG | - | chr8.2:19354033-19354052 | MS.gene60368:CDS | 45.0% | |
| ATCCGAAGCAGATTCGTTTG+TGG | - | chr8.2:19354086-19354105 | MS.gene60368:CDS | 45.0% | |
| ATGAGAAGGTTGGAGTTGGA+GGG | - | chr8.2:19354869-19354888 | MS.gene60368:CDS | 45.0% | |
| CCTGAAAATCGCTACTCCAT+AGG | + | chr8.2:19354135-19354154 | None:intergenic | 45.0% | |
| CTCCTTGTGAAACTTGGCAA+TGG | + | chr8.2:19354983-19355002 | None:intergenic | 45.0% | |
| GTTTGTGGTTTAAGTGCGCA+AGG | - | chr8.2:19354101-19354120 | MS.gene60368:intron | 45.0% | |
| TAGGGTAAGTGTTTCGGACT+TGG | - | chr8.2:19355005-19355024 | MS.gene60368:CDS | 45.0% | |
| TCGTCTTCCGAACTATCCTT+CGG | + | chr8.2:19354043-19354062 | None:intergenic | 45.0% | |
| TTACCGAAACATGATTCCGC+CGG | - | chr8.2:19353960-19353979 | MS.gene60368:CDS | 45.0% | |
| ! | CCTATGGAGTAGCGATTTTC+AGG | - | chr8.2:19354132-19354151 | MS.gene60368:intron | 45.0% |
| ! | GAAAGCGCAGAAATCAGAGT+CGG | + | chr8.2:19354931-19354950 | None:intergenic | 45.0% |
| ! | GTTGCTTTGTCGTGTGATCA+TGG | - | chr8.2:19354578-19354597 | MS.gene60368:intron | 45.0% |
| !! | AATCGCTGATTCATCTTCGC+CGG | + | chr8.2:19353982-19354001 | None:intergenic | 45.0% |
| ATAGTTCGGAAGACGACGGA+GGG | - | chr8.2:19354047-19354066 | MS.gene60368:CDS | 50.0% | |
| CATGAGAAGGTTGGAGTTGG+AGG | - | chr8.2:19354868-19354887 | MS.gene60368:CDS | 50.0% | |
| CGTCTTCCGAACTATCCTTC+GGG | + | chr8.2:19354042-19354061 | None:intergenic | 50.0% | |
| GAACTATCCTTCGGGAATCG+TGG | + | chr8.2:19354034-19354053 | None:intergenic | 50.0% | |
| GGACATGAGAAGGTTGGAGT+TGG | - | chr8.2:19354865-19354884 | MS.gene60368:CDS | 50.0% | |
| ! | AAACGGTAATGGCACAAGCG+AGG | - | chr8.2:19354165-19354184 | MS.gene60368:intron | 50.0% |
| ! | GTTTGAGATCTTCGCACGTG+CGG | - | chr8.2:19354196-19354215 | MS.gene60368:intron | 50.0% |
| AAATTGGAGGCTGTGCCTGC+AGG | - | chr8.2:19354603-19354622 | MS.gene60368:intron | 55.0% | |
| GATAGTTCGGAAGACGACGG+AGG | - | chr8.2:19354046-19354065 | MS.gene60368:CDS | 55.0% | |
| GCGCAAGGGTTGAAACCCTA+TGG | - | chr8.2:19354116-19354135 | MS.gene60368:intron | 55.0% | |
| GGATGCGACACTCTCGCAAT+CGG | + | chr8.2:19354006-19354025 | None:intergenic | 55.0% | |
| TCGCCGGCGGAATCATGTTT+CGG | + | chr8.2:19353966-19353985 | None:intergenic | 55.0% | |
| ! | CTGCGTTGATCAGAACCTGC+AGG | + | chr8.2:19354621-19354640 | None:intergenic | 55.0% |
| !! | GATTGCGAGAGTGTCGCATC+CGG | - | chr8.2:19354005-19354024 | MS.gene60368:CDS | 55.0% |
| CGGTGGCTAAAATGCGCGGT+GGG | - | chr8.2:19354216-19354235 | MS.gene60368:CDS | 60.0% | |
| CGTGCGGTGGCTAAAATGCG+CGG | - | chr8.2:19354212-19354231 | MS.gene60368:CDS | 60.0% | |
| TGAGATCTTCGCACGTGCGG+TGG | - | chr8.2:19354199-19354218 | MS.gene60368:CDS | 60.0% | |
| !! | CGCTGATTCATCTTCGCCGG+CGG | + | chr8.2:19353979-19353998 | None:intergenic | 60.0% |
| GCGGTGGCTAAAATGCGCGG+TGG | - | chr8.2:19354215-19354234 | MS.gene60368:CDS | 65.0% | |
| !! | TGCGAGAGTGTCGCATCCGG+CGG | - | chr8.2:19354008-19354027 | MS.gene60368:CDS | 65.0% |
| CCTTCGGGAATCGTGGCCGC+CGG | + | chr8.2:19354027-19354046 | None:intergenic | 70.0% | |
| CCGGCGGCCACGATTCCCGA+AGG | - | chr8.2:19354024-19354043 | MS.gene60368:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 19353939 | 19355032 | 19353939 | ID=MS.gene60368 |
| chr8.2 | mRNA | 19353939 | 19355032 | 19353939 | ID=MS.gene60368.t1;Parent=MS.gene60368 |
| chr8.2 | exon | 19354710 | 19355032 | 19354710 | ID=MS.gene60368.t1.exon1;Parent=MS.gene60368.t1 |
| chr8.2 | CDS | 19354710 | 19355032 | 19354710 | ID=cds.MS.gene60368.t1;Parent=MS.gene60368.t1 |
| chr8.2 | exon | 19354197 | 19354435 | 19354197 | ID=MS.gene60368.t1.exon2;Parent=MS.gene60368.t1 |
| chr8.2 | CDS | 19354197 | 19354435 | 19354197 | ID=cds.MS.gene60368.t1;Parent=MS.gene60368.t1 |
| chr8.2 | exon | 19353939 | 19354105 | 19353939 | ID=MS.gene60368.t1.exon3;Parent=MS.gene60368.t1 |
| chr8.2 | CDS | 19353939 | 19354105 | 19353939 | ID=cds.MS.gene60368.t1;Parent=MS.gene60368.t1 |
| Gene Sequence |
| Protein sequence |
