Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60581.t1 | XP_003591771.1 | 95.9 | 442 | 18 | 0 | 1 | 442 | 1 | 442 | 3.80E-234 | 820.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60581.t1 | Q5SR56 | 23.5 | 395 | 269 | 10 | 2 | 388 | 35 | 404 | 1.5e-16 | 89.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60581.t1 | G7I364 | 95.9 | 442 | 18 | 0 | 1 | 442 | 1 | 442 | 2.8e-234 | 820.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene60581 | 0.857283 | 1.81E-62 | -1.69E-46 |
| MS.gene051131 | MS.gene60581 | 0.803272 | 3.77E-49 | -1.69E-46 |
| MS.gene052211 | MS.gene60581 | 0.820791 | 5.69E-53 | -1.69E-46 |
| MS.gene05240 | MS.gene60581 | 0.810655 | 1.03E-50 | -1.69E-46 |
| MS.gene054120 | MS.gene60581 | 0.818524 | 1.87E-52 | -1.69E-46 |
| MS.gene054138 | MS.gene60581 | 0.805744 | 1.15E-49 | -1.69E-46 |
| MS.gene054277 | MS.gene60581 | 0.805951 | 1.04E-49 | -1.69E-46 |
| MS.gene054742 | MS.gene60581 | 0.854785 | 9.77E-62 | -1.69E-46 |
| MS.gene056330 | MS.gene60581 | 0.836132 | 1.12E-56 | -1.69E-46 |
| MS.gene056715 | MS.gene60581 | 0.804128 | 2.51E-49 | -1.69E-46 |
| MS.gene056748 | MS.gene60581 | 0.804175 | 2.45E-49 | -1.69E-46 |
| MS.gene056920 | MS.gene60581 | 0.830547 | 2.76E-55 | -1.69E-46 |
| MS.gene056922 | MS.gene60581 | 0.807701 | 4.44E-50 | -1.69E-46 |
| MS.gene056923 | MS.gene60581 | 0.820903 | 5.36E-53 | -1.69E-46 |
| MS.gene056924 | MS.gene60581 | 0.812713 | 3.69E-51 | -1.69E-46 |
| MS.gene056925 | MS.gene60581 | 0.802482 | 5.49E-49 | -1.69E-46 |
| MS.gene057544 | MS.gene60581 | 0.80847 | 3.05E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene60581 | 0.830623 | 2.65E-55 | -1.69E-46 |
| MS.gene060087 | MS.gene60581 | 0.829818 | 4.16E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60581.t1 | MTR_1g092870 | 95.928 | 442 | 18 | 0 | 1 | 442 | 1 | 442 | 0.0 | 862 |
| MS.gene60581.t1 | MTR_1g092880 | 87.104 | 442 | 56 | 1 | 1 | 442 | 1 | 441 | 0.0 | 782 |
| MS.gene60581.t1 | MTR_1g092880 | 88.049 | 410 | 49 | 0 | 1 | 410 | 1 | 410 | 0.0 | 738 |
| MS.gene60581.t1 | MTR_1g092880 | 88.052 | 385 | 46 | 0 | 1 | 385 | 1 | 385 | 0.0 | 690 |
| MS.gene60581.t1 | MTR_3g114810 | 36.038 | 419 | 257 | 2 | 13 | 420 | 9 | 427 | 2.92e-91 | 283 |
| MS.gene60581.t1 | MTR_1g112980 | 34.642 | 433 | 273 | 3 | 10 | 434 | 4 | 434 | 2.23e-87 | 273 |
| MS.gene60581.t1 | MTR_1g112980 | 35.196 | 358 | 222 | 3 | 10 | 359 | 4 | 359 | 5.55e-70 | 226 |
| MS.gene60581.t1 | MTR_1g112980 | 35.465 | 344 | 212 | 3 | 10 | 345 | 4 | 345 | 1.92e-67 | 220 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60581.t1 | AT5G42210 | 37.176 | 425 | 249 | 4 | 13 | 423 | 10 | 430 | 4.81e-92 | 285 |
| MS.gene60581.t1 | AT5G42210 | 36.434 | 387 | 228 | 4 | 13 | 385 | 10 | 392 | 2.20e-81 | 257 |
| MS.gene60581.t1 | AT2G16980 | 33.696 | 460 | 265 | 6 | 8 | 440 | 4 | 450 | 6.16e-78 | 249 |
| MS.gene60581.t1 | AT2G16980 | 33.696 | 460 | 265 | 6 | 8 | 440 | 19 | 465 | 1.66e-77 | 249 |
| MS.gene60581.t1 | AT2G16980 | 34.884 | 430 | 251 | 5 | 8 | 410 | 19 | 446 | 5.29e-77 | 248 |
| MS.gene60581.t1 | AT2G16970 | 32.373 | 451 | 280 | 3 | 8 | 433 | 4 | 454 | 1.12e-74 | 241 |
| MS.gene60581.t1 | AT2G16990 | 33.017 | 421 | 252 | 6 | 13 | 407 | 8 | 424 | 1.54e-70 | 230 |
| MS.gene60581.t1 | AT2G16980 | 33.580 | 405 | 240 | 5 | 8 | 385 | 19 | 421 | 1.95e-67 | 221 |
| MS.gene60581.t1 | AT2G16990 | 32.609 | 414 | 249 | 6 | 13 | 400 | 8 | 417 | 2.80e-67 | 222 |
| MS.gene60581.t1 | AT2G16990 | 32.609 | 414 | 249 | 6 | 13 | 400 | 8 | 417 | 2.80e-67 | 222 |
| MS.gene60581.t1 | AT2G16970 | 31.905 | 420 | 261 | 3 | 8 | 402 | 4 | 423 | 3.59e-66 | 218 |
| MS.gene60581.t1 | AT2G16970 | 32.506 | 403 | 247 | 3 | 8 | 385 | 4 | 406 | 1.86e-65 | 216 |
| MS.gene60581.t1 | AT2G16970 | 32.506 | 403 | 247 | 3 | 8 | 385 | 4 | 406 | 1.86e-65 | 216 |
| MS.gene60581.t1 | AT2G16980 | 31.409 | 433 | 240 | 6 | 8 | 385 | 19 | 449 | 3.49e-62 | 208 |
| MS.gene60581.t1 | AT2G16990 | 31.671 | 401 | 244 | 6 | 13 | 387 | 8 | 404 | 6.29e-62 | 206 |
| MS.gene60581.t1 | AT2G16990 | 31.671 | 401 | 244 | 6 | 13 | 387 | 8 | 404 | 6.29e-62 | 206 |
| MS.gene60581.t1 | AT2G16990 | 31.643 | 414 | 226 | 7 | 13 | 400 | 8 | 390 | 7.05e-57 | 194 |
| MS.gene60581.t1 | AT2G16970 | 32.759 | 348 | 209 | 3 | 8 | 330 | 4 | 351 | 8.90e-56 | 189 |
| MS.gene60581.t1 | AT2G16970 | 32.759 | 348 | 209 | 3 | 8 | 330 | 4 | 351 | 9.73e-56 | 189 |
| MS.gene60581.t1 | AT2G16970 | 31.300 | 377 | 234 | 3 | 8 | 359 | 4 | 380 | 1.00e-55 | 189 |
| MS.gene60581.t1 | AT2G16990 | 31.232 | 349 | 212 | 5 | 13 | 335 | 8 | 354 | 8.59e-50 | 174 |
| MS.gene60581.t1 | AT2G16990 | 31.232 | 349 | 212 | 5 | 13 | 335 | 8 | 354 | 8.59e-50 | 174 |
| MS.gene60581.t1 | AT2G16980 | 33.651 | 315 | 181 | 4 | 122 | 410 | 1 | 313 | 3.17e-46 | 163 |
| MS.gene60581.t1 | AT2G16970 | 33.503 | 197 | 131 | 0 | 237 | 433 | 151 | 347 | 3.09e-29 | 117 |
| MS.gene60581.t1 | AT2G16970 | 35.882 | 170 | 108 | 1 | 8 | 176 | 4 | 173 | 2.08e-28 | 115 |
Find 81 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGTGTAGGCTTGGCTTTC+TGG | 0.046732 | 1.2:-69185239 | MS.gene60581:intron |
| TTTCTTTCCTTCTAGATTAC+TGG | 0.206606 | 1.2:-69186819 | MS.gene60581:intron |
| TCTTCTGCTGCACATGTTAT+TGG | 0.211223 | 1.2:-69186244 | MS.gene60581:CDS |
| GATGGTGGTACTTCCACTTT+TGG | 0.225106 | 1.2:-69186787 | MS.gene60581:CDS |
| GCTGGGGCAAATTCAATATC+TGG | 0.260798 | 1.2:-69184693 | MS.gene60581:CDS |
| ACTTGCTTGGAATCAATCTA+AGG | 0.285147 | 1.2:-69186497 | MS.gene60581:CDS |
| CTTCTGCTGCACATGTTATT+GGG | 0.316928 | 1.2:-69186243 | MS.gene60581:CDS |
| AGGTATTATACTGGTGGATA+TGG | 0.324040 | 1.2:+69186719 | None:intergenic |
| GCTTCCAATACTTAATCCTT+TGG | 0.325570 | 1.2:-69185386 | MS.gene60581:CDS |
| GCCATTGATGTAAATAGCTT+TGG | 0.356157 | 1.2:+69186947 | None:intergenic |
| CCTAGTTGAAACTGTGAAAC+TGG | 0.363738 | 1.2:-69186022 | MS.gene60581:CDS |
| TCCACCAGTATAATACCTTT+TGG | 0.371542 | 1.2:-69186714 | MS.gene60581:intron |
| TACTTCCACTAAGCATTCAT+TGG | 0.375771 | 1.2:-69187046 | MS.gene60581:CDS |
| TTGTTGTAGCTTTACTTGCT+TGG | 0.379609 | 1.2:-69186510 | MS.gene60581:intron |
| CCATACCTAGGTGGCTCATT+TGG | 0.381628 | 1.2:-69185038 | MS.gene60581:CDS |
| CCGCGGAAATAGTAATCTTC+AGG | 0.389670 | 1.2:-69185918 | MS.gene60581:intron |
| CTTCTGATGATGGTCGGAAT+TGG | 0.392333 | 1.2:-69185569 | MS.gene60581:CDS |
| TCATCACTTGAACCAGTATC+AGG | 0.398176 | 1.2:+69184321 | None:intergenic |
| AAAGAGCAGCAGTATTTAGT+TGG | 0.403122 | 1.2:-69186279 | MS.gene60581:CDS |
| TGGATTAGCATGGGCACCTT+GGG | 0.405021 | 1.2:-69185219 | MS.gene60581:intron |
| GGAAGTAACAAGTGAAATAA+AGG | 0.430380 | 1.2:+69187062 | None:intergenic |
| CTGGATTAGCATGGGCACCT+TGG | 0.432018 | 1.2:-69185220 | MS.gene60581:CDS |
| GCTAAAACCTTTGCATTCAA+AGG | 0.432063 | 1.2:+69184517 | None:intergenic |
| AATTCAGAAGCGGGTCTTGT+TGG | 0.432583 | 1.2:+69184283 | None:intergenic |
| TAGATAGCTCACCATGCATA+TGG | 0.436075 | 1.2:+69184481 | None:intergenic |
| GTCAAAGGACTCATTACAAT+TGG | 0.436941 | 1.2:+69184660 | None:intergenic |
| TCCAAAGCTATTTACATCAA+TGG | 0.440133 | 1.2:-69186948 | MS.gene60581:CDS |
| TGCATGCTAAATCCTGATAC+TGG | 0.440797 | 1.2:-69184333 | MS.gene60581:CDS |
| AGCATCAAGCTCAACCAATC+AGG | 0.446005 | 1.2:-69184854 | MS.gene60581:intron |
| ATTACCAAAAGGTATTATAC+TGG | 0.447589 | 1.2:+69186710 | None:intergenic |
| GCAATCCAATGAATGCTTAG+TGG | 0.451192 | 1.2:+69187041 | None:intergenic |
| CCAATACTTAATCCTTTGGT+TGG | 0.453681 | 1.2:-69185382 | MS.gene60581:CDS |
| CCAACCAAAGGATTAAGTAT+TGG | 0.467513 | 1.2:+69185382 | None:intergenic |
| ACAGGAAAGAACCAAGAGTT+AGG | 0.467535 | 1.2:-69185997 | MS.gene60581:CDS |
| ATATGCTATTGATGCAAGTA+AGG | 0.470324 | 1.2:+69185336 | None:intergenic |
| CTAAAACCTTTGCATTCAAA+GGG | 0.470696 | 1.2:+69184518 | None:intergenic |
| CTTGGCTTTCTGGATTAGCA+TGG | 0.472037 | 1.2:-69185229 | MS.gene60581:CDS |
| ATGCATATAAAGTGGACAAA+AGG | 0.473052 | 1.2:+69186050 | None:intergenic |
| CCAGTTTCACAGTTTCAACT+AGG | 0.478479 | 1.2:+69186022 | None:intergenic |
| AAAAGGAAAACAAACCTGAT+TGG | 0.484080 | 1.2:+69184840 | None:intergenic |
| TAATACATACTGTTTGTTGA+AGG | 0.491556 | 1.2:+69186925 | None:intergenic |
| TGGAGCAAGATGATTGTTGA+GGG | 0.492964 | 1.2:+69186967 | None:intergenic |
| AAATGTGCGAAGCACATAGT+AGG | 0.495737 | 1.2:+69186462 | None:intergenic |
| GTTCTCAGAACTTCTGATGA+TGG | 0.496970 | 1.2:-69185579 | MS.gene60581:CDS |
| TTGGCTTTCTGGATTAGCAT+GGG | 0.498516 | 1.2:-69185228 | MS.gene60581:CDS |
| CTGCATTTCTGTCGCGTATG+TGG | 0.504768 | 1.2:-69186410 | MS.gene60581:intron |
| ATCAGTTATAATTCAGAAGC+GGG | 0.507005 | 1.2:+69184274 | None:intergenic |
| GCAGTATTTAGTTGGATCAC+TGG | 0.507206 | 1.2:-69186271 | MS.gene60581:CDS |
| AGGAAGAAATGCATATAAAG+TGG | 0.514915 | 1.2:+69186042 | None:intergenic |
| TCTGAAAGCTGACCCAAAAG+TGG | 0.523725 | 1.2:+69186774 | None:intergenic |
| TTATTGGGAACGTCTTTGCT+CGG | 0.524226 | 1.2:-69186228 | MS.gene60581:CDS |
| GAAACTGTGAAACTGGATAC+AGG | 0.524268 | 1.2:-69186015 | MS.gene60581:CDS |
| TACTGGTGGATATGGTAAGA+AGG | 0.538200 | 1.2:+69186727 | None:intergenic |
| CATGCTCCCTTTGAATGCAA+AGG | 0.546074 | 1.2:-69184524 | MS.gene60581:CDS |
| GACGAAGATACAAATCTATG+AGG | 0.550040 | 1.2:-69185945 | MS.gene60581:CDS |
| CCAAATGAGCCACCTAGGTA+TGG | 0.550789 | 1.2:+69185038 | None:intergenic |
| AGAAACATGTCGTGGTGGAG+TGG | 0.565655 | 1.2:-69187101 | None:intergenic |
| ATCACTTTCTCTCCAACCAA+AGG | 0.567989 | 1.2:+69185370 | None:intergenic |
| TTGGAGCAAGATGATTGTTG+AGG | 0.568723 | 1.2:+69186966 | None:intergenic |
| TTCAAGTGATGATGACTTGG+AGG | 0.573020 | 1.2:-69184310 | MS.gene60581:CDS |
| CTTTGCATTCAAAGGGAGCA+TGG | 0.574893 | 1.2:+69184525 | None:intergenic |
| CAGTCCTGCATTAAGAGGCG+TGG | 0.579001 | 1.2:-69185818 | MS.gene60581:CDS |
| GATATGGTAAGAAGGAGTAG+AGG | 0.581219 | 1.2:+69186735 | None:intergenic |
| GTATTCCACTCACAAGTCAA+AGG | 0.584952 | 1.2:+69184645 | None:intergenic |
| TACTCACGGCAGGTTTCTCA+AGG | 0.586776 | 1.2:+69185003 | None:intergenic |
| TCAGAACTTCTGATGATGGT+CGG | 0.592201 | 1.2:-69185575 | MS.gene60581:CDS |
| CAGCAAAACACTGTGTATGC+CGG | 0.594917 | 1.2:+69185762 | None:intergenic |
| AGAGCCACGCCTCTTAATGC+AGG | 0.599418 | 1.2:+69185814 | None:intergenic |
| TAGTACAGAAGCCTAACTCT+TGG | 0.599829 | 1.2:+69185986 | None:intergenic |
| ACCAAAAGGTATTATACTGG+TGG | 0.609503 | 1.2:+69186713 | None:intergenic |
| TAATGCCAAATGAGCCACCT+AGG | 0.613139 | 1.2:+69185033 | None:intergenic |
| AATCAGTTATAATTCAGAAG+CGG | 0.622840 | 1.2:+69184273 | None:intergenic |
| TGGTTCAAGTGATGATGACT+TGG | 0.630019 | 1.2:-69184313 | MS.gene60581:CDS |
| CCTGAAGATTACTATTTCCG+CGG | 0.641877 | 1.2:+69185918 | None:intergenic |
| ATCTCAGAAACATGTCGTGG+TGG | 0.661528 | 1.2:-69187106 | None:intergenic |
| GGTCAGCTTTCAGATGAACA+CGG | 0.662882 | 1.2:-69186765 | MS.gene60581:CDS |
| CTCATCTCAGAAACATGTCG+TGG | 0.663073 | 1.2:-69187109 | None:intergenic |
| ACTATGCAGGTACCATACCT+AGG | 0.671765 | 1.2:-69185050 | MS.gene60581:intron |
| CAAATCTATGAGGAATGCCG+CGG | 0.682083 | 1.2:-69185935 | MS.gene60581:CDS |
| TCTATGTGCATCCATATGCA+TGG | 0.689652 | 1.2:-69184492 | MS.gene60581:intron |
| ATGCAGGTACCATACCTAGG+TGG | 0.748646 | 1.2:-69185047 | MS.gene60581:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATATATTACTAATGT+TGG | + | chr1.2:69184489-69184508 | None:intergenic | 10.0% |
| !!! | ATAATTTTATCATATATATG+AGG | + | chr1.2:69186406-69186425 | None:intergenic | 10.0% |
| !! | AAATTATATGAAATGTTGTT+TGG | + | chr1.2:69186600-69186619 | None:intergenic | 15.0% |
| !! | AATATATTATTAATGAGTTG+AGG | - | chr1.2:69184497-69184516 | MS.gene60581:CDS | 15.0% |
| !!! | TGAAAATTTTGACAATATTT+AGG | + | chr1.2:69185534-69185553 | None:intergenic | 15.0% |
| !! | AAACTCAATAACTTTCATTA+TGG | + | chr1.2:69186295-69186314 | None:intergenic | 20.0% |
| !! | ACATGACAAGAAATATTTAA+TGG | + | chr1.2:69186474-69186493 | None:intergenic | 20.0% |
| !! | CTTTCAAAATTAGTGTAAAA+TGG | + | chr1.2:69186772-69186791 | None:intergenic | 20.0% |
| !! | GTAAATCAACATAAATGTTA+AGG | + | chr1.2:69184786-69184805 | None:intergenic | 20.0% |
| !! | TAAGCATGTAAATTTGTATA+AGG | + | chr1.2:69186239-69186258 | None:intergenic | 20.0% |
| !! | TACAAATTTACATGCTTATA+TGG | - | chr1.2:69186241-69186260 | MS.gene60581:CDS | 20.0% |
| !!! | ATCATCTAATTGTTGTTTTT+TGG | - | chr1.2:69186926-69186945 | MS.gene60581:intron | 20.0% |
| !!! | CAAATACTAGTATGTTATTT+TGG | - | chr1.2:69184717-69184736 | MS.gene60581:CDS | 20.0% |
| !!! | CATTGATTCTAACTATAAAA+TGG | + | chr1.2:69186432-69186451 | None:intergenic | 20.0% |
| !!! | CATTTTATAGTTAGAATCAA+TGG | - | chr1.2:69186430-69186449 | MS.gene60581:CDS | 20.0% |
| !!! | TTCTTAATATATTTTGGTGT+AGG | - | chr1.2:69186118-69186137 | MS.gene60581:intron | 20.0% |
| ! | AAACAACAATTAGATGATGT+AGG | + | chr1.2:69186924-69186943 | None:intergenic | 25.0% |
| ! | AAATATTTAATGGCAATACC+AGG | + | chr1.2:69186464-69186483 | None:intergenic | 25.0% |
| ! | AATAGAATGAGACAAAGAAA+AGG | + | chr1.2:69186550-69186569 | None:intergenic | 25.0% |
| ! | ATATCATACAATCATCAGTA+TGG | + | chr1.2:69185883-69185902 | None:intergenic | 25.0% |
| ! | GAAAATTAATCTACTACTCA+CGG | + | chr1.2:69186384-69186403 | None:intergenic | 25.0% |
| ! | GATTCTTAATCATGGTTTAT+TGG | - | chr1.2:69185272-69185291 | MS.gene60581:intron | 25.0% |
| ! | GTGAAATTGTAATTACCAAA+AGG | + | chr1.2:69184674-69184693 | None:intergenic | 25.0% |
| ! | TGTGTATGTCTTATAATTTG+AGG | + | chr1.2:69184699-69184718 | None:intergenic | 25.0% |
| ! | TTGGTTATGATTCTTAATCA+TGG | - | chr1.2:69185264-69185283 | MS.gene60581:intron | 25.0% |
| !! | AATTTTGTGATGTAACTTCA+TGG | - | chr1.2:69186630-69186649 | MS.gene60581:intron | 25.0% |
| !! | ATTTATACTTCCTCTCTTTT+AGG | - | chr1.2:69185047-69185066 | MS.gene60581:intron | 25.0% |
| !! | GCTCTCTTCTTAATATATTT+TGG | - | chr1.2:69186112-69186131 | MS.gene60581:intron | 25.0% |
| !! | GTCTCTTTCTTTTATAAGTT+GGG | - | chr1.2:69185580-69185599 | MS.gene60581:CDS | 25.0% |
| !! | TAATACATACTGTTTGTTGA+AGG | + | chr1.2:69184448-69184467 | None:intergenic | 25.0% |
| !! | TGTCTCTTTCTTTTATAAGT+TGG | - | chr1.2:69185579-69185598 | MS.gene60581:CDS | 25.0% |
| !! | TTATCAATTTTACTTACCCA+AGG | + | chr1.2:69186170-69186189 | None:intergenic | 25.0% |
| !!! | ATTACCAAAAGGTATTATAC+TGG | + | chr1.2:69184663-69184682 | None:intergenic | 25.0% |
| !!! | ATTGTTGTTTTTTGGTACAA+TGG | - | chr1.2:69186934-69186953 | MS.gene60581:intron | 25.0% |
| !!! | TACTATTTCAAAGCTGTTTT+TGG | - | chr1.2:69185753-69185772 | MS.gene60581:intron | 25.0% |
| !!! | TTGTTGTTTTTTGGTACAAT+GGG | - | chr1.2:69186935-69186954 | MS.gene60581:CDS | 25.0% |
| !!! | TTTTGGTTAATCTAATGTGT+TGG | - | chr1.2:69184734-69184753 | MS.gene60581:intron | 25.0% |
| !!! | TTTTTTCTATACTCACTGTT+TGG | - | chr1.2:69185245-69185264 | MS.gene60581:intron | 25.0% |
| AAAAGGAAAACAAACCTGAT+TGG | + | chr1.2:69186533-69186552 | None:intergenic | 30.0% | |
| AACTTTCATTATGGAAATGC+AGG | + | chr1.2:69186286-69186305 | None:intergenic | 30.0% | |
| AGGAAGAAATGCATATAAAG+TGG | + | chr1.2:69185331-69185350 | None:intergenic | 30.0% | |
| ATATGCTATTGATGCAAGTA+AGG | + | chr1.2:69186037-69186056 | None:intergenic | 30.0% | |
| ATGCATATAAAGTGGACAAA+AGG | + | chr1.2:69185323-69185342 | None:intergenic | 30.0% | |
| CTAAAACCTTTGCATTCAAA+GGG | + | chr1.2:69186855-69186874 | None:intergenic | 30.0% | |
| GAAAATTCCAGTAATCTAGA+AGG | + | chr1.2:69184561-69184580 | None:intergenic | 30.0% | |
| GAGAGCTTAGATATGATATT+AGG | + | chr1.2:69186098-69186117 | None:intergenic | 30.0% | |
| GGAAGTAACAAGTGAAATAA+AGG | + | chr1.2:69184311-69184330 | None:intergenic | 30.0% | |
| GTATGTCTTATAATTTGAGG+AGG | + | chr1.2:69184696-69184715 | None:intergenic | 30.0% | |
| GTTGAGGACTTCAATTAAAT+CGG | + | chr1.2:69185646-69185665 | None:intergenic | 30.0% | |
| TCCAAAGCTATTTACATCAA+TGG | - | chr1.2:69184422-69184441 | MS.gene60581:intron | 30.0% | |
| TTGAGTTTAATTCACTATGC+AGG | - | chr1.2:69186307-69186326 | MS.gene60581:intron | 30.0% | |
| TTTCTTTCCTTCTAGATTAC+TGG | - | chr1.2:69184551-69184570 | MS.gene60581:intron | 30.0% | |
| ! | AAACAAATTGTCATTTCCTC+TGG | + | chr1.2:69184830-69184849 | None:intergenic | 30.0% |
| ! | AAAGCACAAACTTTTATTGC+TGG | - | chr1.2:69186659-69186678 | MS.gene60581:intron | 30.0% |
| ! | AAGCACAAACTTTTATTGCT+GGG | - | chr1.2:69186660-69186679 | MS.gene60581:intron | 30.0% |
| ! | TTTACAATACTTTTCTCCAG+AGG | - | chr1.2:69184811-69184830 | MS.gene60581:intron | 30.0% |
| ! | TTTTCGCATATAATCAGTCA+AGG | - | chr1.2:69184928-69184947 | MS.gene60581:intron | 30.0% |
| !! | AATCATGGTTTATTGGTTTC+AGG | - | chr1.2:69185279-69185298 | MS.gene60581:intron | 30.0% |
| !! | AATTGGTTCAATCTTTTCTC+AGG | - | chr1.2:69185818-69185837 | MS.gene60581:CDS | 30.0% |
| !! | GATTACTGGAATTTTCAAGA+TGG | - | chr1.2:69184565-69184584 | MS.gene60581:intron | 30.0% |
| !! | TTTGGTTAGTCTTTCTGATT+AGG | + | chr1.2:69186582-69186601 | None:intergenic | 30.0% |
| !! | TTTTATAAGTTGGGAATGAC+CGG | - | chr1.2:69185589-69185608 | MS.gene60581:CDS | 30.0% |
| !!! | AATATATTTTGGTGTAGGCT+TGG | - | chr1.2:69186123-69186142 | MS.gene60581:intron | 30.0% |
| AAAGAGCAGCAGTATTTAGT+TGG | - | chr1.2:69185091-69185110 | MS.gene60581:intron | 35.0% | |
| AAGGTCATTGTAACAGTACA+TGG | + | chr1.2:69186220-69186239 | None:intergenic | 35.0% | |
| ACTTGCTTGGAATCAATCTA+AGG | - | chr1.2:69184873-69184892 | MS.gene60581:CDS | 35.0% | |
| CATACAATCATCAGTATGGA+GGG | + | chr1.2:69185879-69185898 | None:intergenic | 35.0% | |
| CCAACCAAAGGATTAAGTAT+TGG | + | chr1.2:69185991-69186010 | None:intergenic | 35.0% | |
| CCAATACTTAATCCTTTGGT+TGG | - | chr1.2:69185988-69186007 | MS.gene60581:CDS | 35.0% | |
| GACGAAGATACAAATCTATG+AGG | - | chr1.2:69185425-69185444 | MS.gene60581:intron | 35.0% | |
| GCCATTGATGTAAATAGCTT+TGG | + | chr1.2:69184426-69184445 | None:intergenic | 35.0% | |
| GCTAAAACCTTTGCATTCAA+AGG | + | chr1.2:69186856-69186875 | None:intergenic | 35.0% | |
| GCTTCCAATACTTAATCCTT+TGG | - | chr1.2:69185984-69186003 | MS.gene60581:CDS | 35.0% | |
| GTATTGGAAGCAATACAATC+TGG | + | chr1.2:69185975-69185994 | None:intergenic | 35.0% | |
| GTCAAAGGACTCATTACAAT+TGG | + | chr1.2:69186713-69186732 | None:intergenic | 35.0% | |
| TAAATAGTAGTGACACAGCA+AGG | + | chr1.2:69185675-69185694 | None:intergenic | 35.0% | |
| TACTTCCACTAAGCATTCAT+TGG | - | chr1.2:69184324-69184343 | MS.gene60581:CDS | 35.0% | |
| TCATACAATCATCAGTATGG+AGG | + | chr1.2:69185880-69185899 | None:intergenic | 35.0% | |
| TGTGATGTAACTTCATGGTA+GGG | - | chr1.2:69186635-69186654 | MS.gene60581:intron | 35.0% | |
| TTGTGATGTAACTTCATGGT+AGG | - | chr1.2:69186634-69186653 | MS.gene60581:intron | 35.0% | |
| ! | ACCACAAAAATGCAGTTTTG+AGG | + | chr1.2:69185174-69185193 | None:intergenic | 35.0% |
| ! | AGCACAAACTTTTATTGCTG+GGG | - | chr1.2:69186661-69186680 | MS.gene60581:intron | 35.0% |
| ! | AGGTATTATACTGGTGGATA+TGG | + | chr1.2:69184654-69184673 | None:intergenic | 35.0% |
| ! | ATTTTCAGTCCTGCATTAAG+AGG | - | chr1.2:69185547-69185566 | MS.gene60581:intron | 35.0% |
| ! | TCCACCAGTATAATACCTTT+TGG | - | chr1.2:69184656-69184675 | MS.gene60581:intron | 35.0% |
| ! | TCCTCAAAACTGCATTTTTG+TGG | - | chr1.2:69185170-69185189 | MS.gene60581:intron | 35.0% |
| ! | TGAGACTGTCGATTAAACTA+TGG | + | chr1.2:69185719-69185738 | None:intergenic | 35.0% |
| ! | TTGTTGTAGCTTTACTTGCT+TGG | - | chr1.2:69184860-69184879 | MS.gene60581:CDS | 35.0% |
| !! | ACCAAAAGGTATTATACTGG+TGG | + | chr1.2:69184660-69184679 | None:intergenic | 35.0% |
| !! | TACTGGAATTTTCAAGATGG+TGG | - | chr1.2:69184568-69184587 | MS.gene60581:intron | 35.0% |
| AAATGTGCGAAGCACATAGT+AGG | + | chr1.2:69184911-69184930 | None:intergenic | 40.0% | |
| ACAACATCTGCCTAAAAGAG+AGG | + | chr1.2:69185060-69185079 | None:intergenic | 40.0% | |
| ACAGGAAAGAACCAAGAGTT+AGG | - | chr1.2:69185373-69185392 | MS.gene60581:CDS | 40.0% | |
| ATCACTTTCTCTCCAACCAA+AGG | + | chr1.2:69186003-69186022 | None:intergenic | 40.0% | |
| ATTAATCTACTACTCACGGC+AGG | + | chr1.2:69186380-69186399 | None:intergenic | 40.0% | |
| CACAGCAAGGAAAAAAGTTG+AGG | + | chr1.2:69185662-69185681 | None:intergenic | 40.0% | |
| CCAGTTTCACAGTTTCAACT+AGG | + | chr1.2:69185351-69185370 | None:intergenic | 40.0% | |
| CCTAGTTGAAACTGTGAAAC+TGG | - | chr1.2:69185348-69185367 | MS.gene60581:CDS | 40.0% | |
| CCTGAAGATTACTATTTCCG+CGG | + | chr1.2:69185455-69185474 | None:intergenic | 40.0% | |
| CTTCTGCTGCACATGTTATT+GGG | - | chr1.2:69185127-69185146 | MS.gene60581:intron | 40.0% | |
| GAAACTGTGAAACTGGATAC+AGG | - | chr1.2:69185355-69185374 | MS.gene60581:CDS | 40.0% | |
| GATATGGTAAGAAGGAGTAG+AGG | + | chr1.2:69184638-69184657 | None:intergenic | 40.0% | |
| GCAATCCAATGAATGCTTAG+TGG | + | chr1.2:69184332-69184351 | None:intergenic | 40.0% | |
| GCAGTATTTAGTTGGATCAC+TGG | - | chr1.2:69185099-69185118 | MS.gene60581:intron | 40.0% | |
| GTATTCCACTCACAAGTCAA+AGG | + | chr1.2:69186728-69186747 | None:intergenic | 40.0% | |
| GTTCTCAGAACTTCTGATGA+TGG | - | chr1.2:69185791-69185810 | MS.gene60581:CDS | 40.0% | |
| TAGATAGCTCACCATGCATA+TGG | + | chr1.2:69186892-69186911 | None:intergenic | 40.0% | |
| TAGTACAGAAGCCTAACTCT+TGG | + | chr1.2:69185387-69185406 | None:intergenic | 40.0% | |
| TCAGGTATAATGCTTCTCAG+AGG | - | chr1.2:69185836-69185855 | MS.gene60581:intron | 40.0% | |
| TCATCACTTGAACCAGTATC+AGG | + | chr1.2:69187052-69187071 | None:intergenic | 40.0% | |
| TCTATGTGCATCCATATGCA+TGG | - | chr1.2:69186878-69186897 | MS.gene60581:intron | 40.0% | |
| TCTTCTGCTGCACATGTTAT+TGG | - | chr1.2:69185126-69185145 | MS.gene60581:intron | 40.0% | |
| TGCATGCTAAATCCTGATAC+TGG | - | chr1.2:69187037-69187056 | MS.gene60581:CDS | 40.0% | |
| TGGAGCAAGATGATTGTTGA+GGG | + | chr1.2:69184406-69184425 | None:intergenic | 40.0% | |
| TTATTGGGAACGTCTTTGCT+CGG | - | chr1.2:69185142-69185161 | MS.gene60581:intron | 40.0% | |
| TTGGAGCAAGATGATTGTTG+AGG | + | chr1.2:69184407-69184426 | None:intergenic | 40.0% | |
| ! | TACTGGTGGATATGGTAAGA+AGG | + | chr1.2:69184646-69184665 | None:intergenic | 40.0% |
| ! | TGGTTCAAGTGATGATGACT+TGG | - | chr1.2:69187057-69187076 | MS.gene60581:CDS | 40.0% |
| ! | TTCAAGTGATGATGACTTGG+AGG | - | chr1.2:69187060-69187079 | MS.gene60581:CDS | 40.0% |
| !! | ATGGTGGTACTTCCACTTTT+GGG | - | chr1.2:69184584-69184603 | MS.gene60581:intron | 40.0% |
| !! | TCAGAACTTCTGATGATGGT+CGG | - | chr1.2:69185795-69185814 | MS.gene60581:CDS | 40.0% |
| !! | TTGGCTTTCTGGATTAGCAT+GGG | - | chr1.2:69186142-69186161 | MS.gene60581:intron | 40.0% |
| ACTATGCAGGTACCATACCT+AGG | - | chr1.2:69186320-69186339 | MS.gene60581:intron | 45.0% | |
| AGCATCAAGCTCAACCAATC+AGG | - | chr1.2:69186516-69186535 | MS.gene60581:intron | 45.0% | |
| CAAATCTATGAGGAATGCCG+CGG | - | chr1.2:69185435-69185454 | MS.gene60581:intron | 45.0% | |
| CAGCAAAACACTGTGTATGC+CGG | + | chr1.2:69185611-69185630 | None:intergenic | 45.0% | |
| CATCAGTATGGAGGGATCAA+AGG | + | chr1.2:69185871-69185890 | None:intergenic | 45.0% | |
| CATGCTCCCTTTGAATGCAA+AGG | - | chr1.2:69186846-69186865 | MS.gene60581:intron | 45.0% | |
| CCGCGGAAATAGTAATCTTC+AGG | - | chr1.2:69185452-69185471 | MS.gene60581:intron | 45.0% | |
| CTTTGCATTCAAAGGGAGCA+TGG | + | chr1.2:69186848-69186867 | None:intergenic | 45.0% | |
| GCTGGGGCAAATTCAATATC+TGG | - | chr1.2:69186677-69186696 | MS.gene60581:intron | 45.0% | |
| GGTCAGCTTTCAGATGAACA+CGG | - | chr1.2:69184605-69184624 | MS.gene60581:intron | 45.0% | |
| TAATGCCAAATGAGCCACCT+AGG | + | chr1.2:69186340-69186359 | None:intergenic | 45.0% | |
| TAATGGCAATACCAGGAGTC+AGG | + | chr1.2:69186457-69186476 | None:intergenic | 45.0% | |
| TCTGAAAGCTGACCCAAAAG+TGG | + | chr1.2:69184599-69184618 | None:intergenic | 45.0% | |
| ! | AATTCAGAAGCGGGTCTTGT+TGG | + | chr1.2:69187090-69187109 | None:intergenic | 45.0% |
| !! | CTTCTGATGATGGTCGGAAT+TGG | - | chr1.2:69185801-69185820 | MS.gene60581:CDS | 45.0% |
| !! | CTTGGCTTTCTGGATTAGCA+TGG | - | chr1.2:69186141-69186160 | MS.gene60581:intron | 45.0% |
| !! | GATGGTGGTACTTCCACTTT+TGG | - | chr1.2:69184583-69184602 | MS.gene60581:intron | 45.0% |
| !! | TGAGTCCTTTGACTTGTGAG+TGG | - | chr1.2:69186720-69186739 | MS.gene60581:CDS | 45.0% |
| ATGCAGGTACCATACCTAGG+TGG | - | chr1.2:69186323-69186342 | MS.gene60581:intron | 50.0% | |
| CCAAATGAGCCACCTAGGTA+TGG | + | chr1.2:69186335-69186354 | None:intergenic | 50.0% | |
| CCATACCTAGGTGGCTCATT+TGG | - | chr1.2:69186332-69186351 | MS.gene60581:intron | 50.0% | |
| CTGCATTTCTGTCGCGTATG+TGG | - | chr1.2:69184960-69184979 | MS.gene60581:intron | 50.0% | |
| GAATCAATGGTCCTGACTCC+TGG | - | chr1.2:69186443-69186462 | MS.gene60581:CDS | 50.0% | |
| TACTCACGGCAGGTTTCTCA+AGG | + | chr1.2:69186370-69186389 | None:intergenic | 50.0% | |
| TTTCTGTCGCGTATGTGGTG+AGG | - | chr1.2:69184965-69184984 | MS.gene60581:intron | 50.0% | |
| ! | CGGCATACACAGTGTTTTGC+TGG | - | chr1.2:69185609-69185628 | MS.gene60581:CDS | 50.0% |
| ! | TTGGTGTAGGCTTGGCTTTC+TGG | - | chr1.2:69186131-69186150 | MS.gene60581:intron | 50.0% |
| !! | TGGATTAGCATGGGCACCTT+GGG | - | chr1.2:69186151-69186170 | MS.gene60581:intron | 50.0% |
| AGAGCCACGCCTCTTAATGC+AGG | + | chr1.2:69185559-69185578 | None:intergenic | 55.0% | |
| CAGTCCTGCATTAAGAGGCG+TGG | - | chr1.2:69185552-69185571 | MS.gene60581:intron | 55.0% | |
| !! | CTGGATTAGCATGGGCACCT+TGG | - | chr1.2:69186150-69186169 | MS.gene60581:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 69184275 | 69187117 | 69184275 | ID=MS.gene60581 |
| chr1.2 | mRNA | 69184275 | 69187117 | 69184275 | ID=MS.gene60581.t1;Parent=MS.gene60581 |
| chr1.2 | exon | 69186935 | 69187117 | 69186935 | ID=MS.gene60581.t1.exon1;Parent=MS.gene60581.t1 |
| chr1.2 | CDS | 69186935 | 69187117 | 69186935 | ID=cds.MS.gene60581.t1;Parent=MS.gene60581.t1 |
| chr1.2 | exon | 69186715 | 69186826 | 69186715 | ID=MS.gene60581.t1.exon2;Parent=MS.gene60581.t1 |
| chr1.2 | CDS | 69186715 | 69186826 | 69186715 | ID=cds.MS.gene60581.t1;Parent=MS.gene60581.t1 |
| chr1.2 | exon | 69186411 | 69186523 | 69186411 | ID=MS.gene60581.t1.exon3;Parent=MS.gene60581.t1 |
| chr1.2 | CDS | 69186411 | 69186523 | 69186411 | ID=cds.MS.gene60581.t1;Parent=MS.gene60581.t1 |
| chr1.2 | exon | 69186201 | 69186323 | 69186201 | ID=MS.gene60581.t1.exon4;Parent=MS.gene60581.t1 |
| chr1.2 | CDS | 69186201 | 69186323 | 69186201 | ID=cds.MS.gene60581.t1;Parent=MS.gene60581.t1 |
| chr1.2 | exon | 69185919 | 69186091 | 69185919 | ID=MS.gene60581.t1.exon5;Parent=MS.gene60581.t1 |
| chr1.2 | CDS | 69185919 | 69186091 | 69185919 | ID=cds.MS.gene60581.t1;Parent=MS.gene60581.t1 |
| chr1.2 | exon | 69185762 | 69185837 | 69185762 | ID=MS.gene60581.t1.exon6;Parent=MS.gene60581.t1 |
| chr1.2 | CDS | 69185762 | 69185837 | 69185762 | ID=cds.MS.gene60581.t1;Parent=MS.gene60581.t1 |
| chr1.2 | exon | 69185553 | 69185639 | 69185553 | ID=MS.gene60581.t1.exon7;Parent=MS.gene60581.t1 |
| chr1.2 | CDS | 69185553 | 69185639 | 69185553 | ID=cds.MS.gene60581.t1;Parent=MS.gene60581.t1 |
| chr1.2 | exon | 69185336 | 69185416 | 69185336 | ID=MS.gene60581.t1.exon8;Parent=MS.gene60581.t1 |
| chr1.2 | CDS | 69185336 | 69185416 | 69185336 | ID=cds.MS.gene60581.t1;Parent=MS.gene60581.t1 |
| chr1.2 | exon | 69185220 | 69185252 | 69185220 | ID=MS.gene60581.t1.exon9;Parent=MS.gene60581.t1 |
| chr1.2 | CDS | 69185220 | 69185252 | 69185220 | ID=cds.MS.gene60581.t1;Parent=MS.gene60581.t1 |
| chr1.2 | exon | 69185010 | 69185063 | 69185010 | ID=MS.gene60581.t1.exon10;Parent=MS.gene60581.t1 |
| chr1.2 | CDS | 69185010 | 69185063 | 69185010 | ID=cds.MS.gene60581.t1;Parent=MS.gene60581.t1 |
| chr1.2 | exon | 69184855 | 69184896 | 69184855 | ID=MS.gene60581.t1.exon11;Parent=MS.gene60581.t1 |
| chr1.2 | CDS | 69184855 | 69184896 | 69184855 | ID=cds.MS.gene60581.t1;Parent=MS.gene60581.t1 |
| chr1.2 | exon | 69184658 | 69184736 | 69184658 | ID=MS.gene60581.t1.exon12;Parent=MS.gene60581.t1 |
| chr1.2 | CDS | 69184658 | 69184736 | 69184658 | ID=cds.MS.gene60581.t1;Parent=MS.gene60581.t1 |
| chr1.2 | exon | 69184493 | 69184563 | 69184493 | ID=MS.gene60581.t1.exon13;Parent=MS.gene60581.t1 |
| chr1.2 | CDS | 69184493 | 69184563 | 69184493 | ID=cds.MS.gene60581.t1;Parent=MS.gene60581.t1 |
| chr1.2 | exon | 69184275 | 69184376 | 69184275 | ID=MS.gene60581.t1.exon14;Parent=MS.gene60581.t1 |
| chr1.2 | CDS | 69184275 | 69184376 | 69184275 | ID=cds.MS.gene60581.t1;Parent=MS.gene60581.t1 |
| Gene Sequence |
| Protein sequence |
