AlfalfaGEDB | MS.gene62064

M. sativa cultivar XinJiangDaYe / MS.gene62064

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62064.t1	AEW68341.1	91	344	2	3	34	348	66	409	1.00E-173	619.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62064.t1	Q9LEB4	65.9	340	83	9	31	341	74	409	1.6e-114	414.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62064.t1	G9JZL3	91.0	344	2	3	34	348	66	409	7.4e-174	619.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene01884	MS.gene62064	PPI
MS.gene037607	MS.gene62064	PPI
MS.gene20989	MS.gene62064	PPI
MS.gene21052	MS.gene62064	PPI
MS.gene40752	MS.gene62064	PPI
MS.gene58553	MS.gene62064	PPI
MS.gene62064	MS.gene84655	PPI
MS.gene62064	MS.gene002926	PPI
MS.gene62064	MS.gene49664	PPI
MS.gene62064	MS.gene93756	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62064.t1	MTR_4g131970	89.197	361	10	3	17	348	51	411	0.0	631
MS.gene62064.t1	MTR_2g022950	71.353	377	62	14	9	348	34	401	6.25e-164	464
MS.gene62064.t1	MTR_2g097960	51.724	348	108	7	33	325	8	350	1.14e-106	319
MS.gene62064.t1	MTR_3g101370	46.650	403	141	10	5	342	25	418	2.82e-105	315
MS.gene62064.t1	MTR_4g086600	52.805	303	84	5	37	288	113	407	6.66e-104	313
MS.gene62064.t1	MTR_1g020080	52.647	340	115	8	38	342	95	423	2.87e-103	310
MS.gene62064.t1	MTR_2g022950	68.421	209	32	6	9	189	34	236	2.03e-89	270
MS.gene62064.t1	MTR_2g022950	68.421	209	32	6	9	189	34	236	5.64e-89	269
MS.gene62064.t1	MTR_3g101370	42.857	273	93	6	5	217	25	294	1.71e-61	199
MS.gene62064.t1	MTR_1g020080	50.698	215	69	4	38	222	95	302	8.82e-60	195

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62064.t1	AT1G11650	61.808	343	84	9	14	324	39	366	1.15e-141	407
MS.gene62064.t1	AT5G54900	61.250	320	94	7	33	324	53	370	6.62e-128	372
MS.gene62064.t1	AT4G27000	60.938	320	93	6	33	323	73	389	5.56e-118	347
MS.gene62064.t1	AT1G11650	62.681	276	66	6	14	260	39	306	8.18e-118	343
MS.gene62064.t1	AT3G19130	53.822	314	101	7	35	308	103	412	1.42e-105	317
MS.gene62064.t1	AT1G49600	52.424	330	112	6	34	326	113	434	2.34e-105	316
MS.gene62064.t1	AT5G19350	49.737	380	126	11	2	341	3	357	4.78e-103	310
MS.gene62064.t1	AT5G19350	50.000	384	123	12	2	341	3	361	5.64e-103	310
MS.gene62064.t1	AT1G49600	54.296	291	100	4	34	291	113	403	2.31e-99	301
MS.gene62064.t1	AT1G49600	54.296	291	100	4	34	291	113	403	2.31e-99	301

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Find 110 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCAACCTCCTCAGATG+TGG	0.548206	8.2:+2654230	MS.gene62064:CDS
AAATGTTCATCTGTGACATT+AGG	0.302859	8.2:-2657509	None:intergenic
AACCACTACTACCATTCCAC+TGG	0.555021	8.2:-2657932	None:intergenic
AACCAGTGGAATGGTAGTAG+TGG	0.621693	8.2:+2657930	MS.gene62064:CDS
AACCCAACCTCCTCAGATGT+GGG	0.594298	8.2:+2654231	MS.gene62064:CDS
AACCCACATCTCTTGCCTGA+TGG	0.492705	8.2:-2657578	None:intergenic
AAGCGGTTATTATACCTCGC+CGG	0.663738	8.2:-2654386	None:intergenic
AAGCTGAATAATCAATCTGA+AGG	0.566703	8.2:+2655087	MS.gene62064:CDS
AATAATCAATCTGAAGGTTA+TGG	0.329662	8.2:+2655093	MS.gene62064:CDS
AATGGTAGTAGTGGTTACTT+CGG	0.624503	8.2:+2657939	MS.gene62064:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCTGTACTATGCAGAT+TGG	+	chr8.2:2656350-2656369	MS.gene62064:intron	30.0%
AAATGTTCATCTGTGACATT+AGG	-	chr8.2:2657512-2657531	None:intergenic	30.0%
AAGCTGAATAATCAATCTGA+AGG	+	chr8.2:2655087-2655106	MS.gene62064:CDS	30.0%
AATAGCTGCTGTATGTAATT+TGG	-	chr8.2:2656042-2656061	None:intergenic	30.0%
ATACGCACAGTTGTATTATT+TGG	-	chr8.2:2657403-2657422	None:intergenic	30.0%
ATGCTATCAAATCATGATAC+GGG	+	chr8.2:2654688-2654707	MS.gene62064:intron	30.0%
ATTGAAATAAAGAACAGAGC+AGG	-	chr8.2:2656569-2656588	None:intergenic	30.0%
CATATATTGCTCAGTCTAAT+GGG	+	chr8.2:2656475-2656494	MS.gene62064:intron	30.0%
CATGCTATCAAATCATGATA+CGG	+	chr8.2:2654687-2654706	MS.gene62064:intron	30.0%
CATGTAATTGTTTGAATCGA+TGG	+	chr8.2:2656878-2656897	MS.gene62064:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	2654199	2658097	2654199	ID=MS.gene62064
chr8.2	mRNA	2654199	2658097	2654199	ID=MS.gene62064.t1;Parent=MS.gene62064
chr8.2	exon	2654199	2654393	2654199	ID=MS.gene62064.t1.exon1;Parent=MS.gene62064.t1
chr8.2	CDS	2654199	2654393	2654199	ID=cds.MS.gene62064.t1;Parent=MS.gene62064.t1
chr8.2	exon	2655060	2655181	2655060	ID=MS.gene62064.t1.exon2;Parent=MS.gene62064.t1
chr8.2	CDS	2655060	2655181	2655060	ID=cds.MS.gene62064.t1;Parent=MS.gene62064.t1
chr8.2	exon	2655228	2655318	2655228	ID=MS.gene62064.t1.exon3;Parent=MS.gene62064.t1
chr8.2	CDS	2655228	2655318	2655228	ID=cds.MS.gene62064.t1;Parent=MS.gene62064.t1
chr8.2	exon	2655348	2655528	2655348	ID=MS.gene62064.t1.exon4;Parent=MS.gene62064.t1
chr8.2	CDS	2655348	2655528	2655348	ID=cds.MS.gene62064.t1;Parent=MS.gene62064.t1
chr8.2	exon	2657356	2657414	2657356	ID=MS.gene62064.t1.exon5;Parent=MS.gene62064.t1
chr8.2	CDS	2657356	2657414	2657356	ID=cds.MS.gene62064.t1;Parent=MS.gene62064.t1
chr8.2	exon	2657488	2657618	2657488	ID=MS.gene62064.t1.exon6;Parent=MS.gene62064.t1
chr8.2	CDS	2657488	2657618	2657488	ID=cds.MS.gene62064.t1;Parent=MS.gene62064.t1
chr8.2	exon	2657723	2657807	2657723	ID=MS.gene62064.t1.exon7;Parent=MS.gene62064.t1
chr8.2	CDS	2657723	2657807	2657723	ID=cds.MS.gene62064.t1;Parent=MS.gene62064.t1
chr8.2	exon	2657915	2658097	2657915	ID=MS.gene62064.t1.exon8;Parent=MS.gene62064.t1
chr8.2	CDS	2657915	2658097	2657915	ID=cds.MS.gene62064.t1;Parent=MS.gene62064.t1

Gene Sequence

>MS.gene62064

ATGATGATGCATCCTCCTCAGCCTCAACCACAAACCCAACCTCCTCAGATGTGGGCCCCTAACACCCAGCCTCCTCAACAATCGGCCGTTCCTCCTCCTACCAGCGCCGATGAAGTCAAAACTCTCTGGATCGGTGATTTGCAATATTGGATGGACGAGAATTATCTTTATAATTGTTTCTCTCACACCGGCGAGGTATAATAACCGCTTTTATTATCATATCTTTTTAGATCTATAGATTTTAAATCTCTTAGGGTTAGTTTTTTTTTTTTTTGTAGAAAAATTGTTAGGGTTAGTTGATGCATGAAGTTTATGTTAATCGGATCAAAAACAATTTTGTTATGTTATTGTTTAATTTGAATACGAGGTTCTTTTATAAAGACCAGTTTGTTATGAAAACGATGTTTTCTGTTTTGAGAAATTGGATAATCTTTTATTCATTGGATTTAATTTGTTTACACGGACGGTGTAAAACTTTTGTACACATGCATGCTATCAAATCATGATACGGGGTTCTCTAAGTTGTTTATGAATCGATGTATGGTTTATTTGTTGGATTTAATTTGCATACACAGACAGTGCAAAGTTTTTTACACATGCATCCTAACAAATCACGACAATAGATATTTATGTAGATATTTTAGATTAGAAACCAAGCTATATATGGCACTATGGTGTTGATTTGTTTTACACTGTCAGTGCATATAGATTTATCTATAATTTATTCTGTATACTTGAACTGTTTATTATTCAAGGTGAAATTGTTATAGTATTATTTTCACTATATTGATAGTGAAATTATTATGTCAATTTTGAAGGTGTTTTTGTTTATATTTAAGGAGTTGTTCTGTTTCTTTGTAGGTTGGATCTGTTAAAGTTATTCGCAATAAGCTGAATAATCAATCTGAAGGTTATGGGTTTCTTGAGTTTATTAGCCGTGCTGGTGCTGAGAGAGTACTTCAAACATATAATGGCACCATTATGCCAAATGGTGGCCAGAATTTCAGATTGAACTGGGCCAACTTTTAGTTCTGGTGAGAAGCGCCATGTTGATTCTCCGGATTACACCATATTTGTTGGTGACTTGGCTGCTGATGTTAGTGATCATCATTTGACGGAAGTGTTTAGAACTCGTATAATTCAGTTAAGGGTGCCAAAGTTGTAATTGACAGGAACACTGGTAGGTCAAAAGGTTATGGTTTTGTTAGGTTTGCTGATGAGAGTGAACAAATGAGGGCGATGACTGAAATGCAAGGGGTTCTTTGTTCCACAAGACCCATGCGTATTGGACCAGCCTCTAACAAAAACCTTGGCACACAGACTTCAAAAGGTTGTTTTTTTAATGGTTGATATACATTGGCCAACATAAAGAAAAACTTGTGCTGTTTTCCTTCAGATGCCAGTGTTTAACCTATTGATGAATAATGATACTGTTTGGATATAATGCTTATGTCTCCCTGTTATCTTTTATCGTGTGAATCCCTAAATGTTATCCTTCAGTATAAGATAAGTTTTCAGTCAGGCTCTTGAAGATATGCTGTCTAAACTCGATGCTTGTTCGTAATTTCGTTTCAAAATTTGGGCTTAGTAAATCATGTAGAATAATAAAATCTTATAGAACTCGTGTTGTCTCAAAGCAGGGTTTCAAGAGGCTCTATCATCTCGAGCCTGGAACTGATTTCAGCTGAAATGGTTACCATTTTAGTGCATGCCTTCCGTAGGTCAGTAATCCGTTTATGTCTCGCCCATAATTTTTGGTGGCATTTTCTTTCCCGCCTTTATTCCGCACCTATTCTGTTTACTTTCTCTTTTCCTTTCGTTTTGTTGGCTTGCTTTTAAGCCAAATTACATACAGCAGCTATTCATAGTTTTTAATTTTTTTTCAGCCCACCTTTCTTTGTTTCAGCTCTTAATTTTTATTCTTTCGAGCTTTACTTCTTTTGGTATTTTAAATTATATCCAAATAATCTTAGTTCTTGCATTAGAACTACATCTTTCAATTTACTTGCAAGATTTATCTTATTCTACAGCAAATCTTGTTTACTTTAATAATTTTGGTTCATCTGTCTGATGCTTTAATAATTTAAGTTACCAATCTCAAATCCACCGGGTTAAAAGGTGGGGTCCTGGTCTTTAGTGCTTTCGTTGTGTAAAATCTGTACTATGCAGATTGGTTGTTCGTTGTCACGTTCTTTACTATTTATTTTCATGATGTTATGGCTTTTTCTTTCTTGGTTAGTTTCTGCACTGTTTGGCGTACTAAATTTATAATTTAGCATATATTGCTCAGTCTAATGGGTAGTGTAGTCTTTCGGAATTTCTAGTTGATGCGTTGTGAGTTTTTTCTGCACAAGCATTTGACAGTTTCCTGCTCTGTTCTTTATTTCAATCTCTACGTTAACTTTGATTATAATATAGGACATCAATCTCTATTGAACTTTGATTATAACAAGGAAGATCGATTCCATTTCTATATGCTTCGATGCATATGTAAACAAATTTACATACGCGCGCGCGCAGTCCTTGCATTTCTCAACACTTTAACTATTTTTATTGAATATTTAGGACACAGGAAGATCAATGCCATTTCTATATGCATATGTAAATAAATTTACACACACACAGACGTGCGCGCAGTCGTTGCATTGCTCAACACTTCAACTATTTTTATTGAATATTCATGTAATTGTTTGAATCGATGGTTTATTTTTGTCCATGATTTAATGTATAGATGAATAGTTATCTTCTCTTATATTTCAACAAGGATGGTGTGTGTAAGGCACCGACCTTTTTATTGCTCCTCAACCCTGGGTGCATCATTCATTGCACATGTTAAGTAAATTGAATGTGTTTATTTTATACTGACTTAATTTCTGTTTGTTGAATGTTTATAGTCATTTGTTGCTTCTGAAATTCCTCGTGTGCTTGCTTTTGGAATGAATTATCTTCATCTGTAAATGAATATTCGAAGCATCTGAATAGCTGTTTTGACTGAAAATATGAACAAATTTTGCTTGAAAATTATGTCACAGAAATACAAGCCGTGCATTTTATTATATTATGCTATTGGTTTATTTTCTGTCTTTTTTCTATGAACTGCTTCCTTCCATGTTCTATGTCATTTATCTTTTTATTTTATTTTACTTTGAAAATGCAGCTTCTTATCAGAATCCACAAGGGGGGGCACAGAACGAGAATGATCCAAATAATACAACTGTGCGTATTTCTTTATAACATAGAAATTGTTCTCTTTTATACTTGGTTGTAACCTGATTTCTCTTTGTTGCAGATTTTTGTTGGCAATTTGGATCCTAATGTCACAGATGAACATTTGAAACAAGTTTTTACTCAGTATGGTGAACTGGTTCATGTTAAGATTCCATCAGGCAAGAGATGTGGGTTTGTCCAATTTGCAGACAGGTAAATTAATCATTTAGATATTTGATTTGATATTTATCTTATGACGGTATTACTTCCCCATTCTATTCAGTGCTCTGATTGTGCCACTATATTTAATATATCAGGAGTTCTGCTGAGGAAGCACTACGGGTTTTAAATGGTACGCTTCTAGGTGGACAAAATGTCCGGCTTTCATGGGGCCGAAGCCCGGCAAACAACAGGTAATAGTTTTGAGATTGTTGTAAACCTGAGCTGCATTTGATGCAAACATTTTTGACTTATTTTGATCAATAATGGATTTCCTTGCTGATTTTCAGACCCAACAAGATCCAAACCAGTGGAATGGTAGTAGTGGTTACTTCGGCGGATATGCCCAAGGTTATGAAAATTATGCTTATGCCCCTCCTGCTGGACAAGATCCCAATATGTATGGCAGCTATCCGGCGGGGTATGCAAGTTACCAACCTCCTCAGCAGCAACAGCAATTAGGATATAGTTAA

Protein sequence

>MS.gene62064.t1

MMMHPPQPQPQTQPPQMWAPNTQPPQQSAVPPPTSADEVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKLNNQSEGYGFLEFISRAGAERVLQTYNGTIISGEKRHVDSPDYTIFVGDLAADVSDHHLTEGAKVVIDRNTGRSKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKIPSGKRCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPTQQDPNQWNGSSGYFGGYAQGYENYAYAPPAGQDPNMYGSYPAGYASYQPPQQQQQLGYS