Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93123.t1 | XP_013470380.1 | 87.5 | 416 | 52 | 0 | 1 | 416 | 1 | 416 | 2.10E-104 | 389.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93123.t1 | I3SW78 | 87.5 | 416 | 52 | 0 | 1 | 416 | 1 | 416 | 1.5e-104 | 389.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene93123 | 0.838423 | 2.90E-57 | -1.69E-46 |
| MS.gene04919 | MS.gene93123 | 0.82222 | 2.66E-53 | -1.69E-46 |
| MS.gene04920 | MS.gene93123 | 0.847792 | 9.24E-60 | -1.69E-46 |
| MS.gene049254 | MS.gene93123 | 0.821582 | 3.74E-53 | -1.69E-46 |
| MS.gene049283 | MS.gene93123 | 0.823298 | 1.49E-53 | -1.69E-46 |
| MS.gene049368 | MS.gene93123 | 0.807782 | 4.27E-50 | -1.69E-46 |
| MS.gene049499 | MS.gene93123 | 0.82624 | 3.02E-54 | -1.69E-46 |
| MS.gene049711 | MS.gene93123 | 0.823176 | 1.59E-53 | -1.69E-46 |
| MS.gene049983 | MS.gene93123 | 0.829374 | 5.33E-55 | -1.69E-46 |
| MS.gene050414 | MS.gene93123 | 0.80905 | 2.29E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene93123 | 0.815687 | 8.14E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene93123 | 0.804812 | 1.80E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene93123 | 0.81108 | 8.37E-51 | -1.69E-46 |
| MS.gene050945 | MS.gene93123 | 0.829789 | 4.23E-55 | -1.69E-46 |
| MS.gene051019 | MS.gene93123 | 0.809581 | 1.76E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene93123 | 0.808469 | 3.05E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene93123 | 0.803057 | 4.18E-49 | -1.69E-46 |
| MS.gene051637 | MS.gene93123 | 0.811464 | 6.91E-51 | -1.69E-46 |
| MS.gene051699 | MS.gene93123 | 0.812064 | 5.12E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene93123 | 0.824553 | 7.59E-54 | -1.69E-46 |
| MS.gene052036 | MS.gene93123 | 0.805407 | 1.35E-49 | -1.69E-46 |
| MS.gene052072 | MS.gene93123 | 0.809468 | 1.86E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene93123 | 0.824005 | 1.02E-53 | -1.69E-46 |
| MS.gene052463 | MS.gene93123 | 0.821052 | 4.96E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene93123 | 0.812842 | 3.46E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene93123 | 0.802267 | 6.08E-49 | -1.69E-46 |
| MS.gene052533 | MS.gene93123 | 0.832841 | 7.51E-56 | -1.69E-46 |
| MS.gene053079 | MS.gene93123 | 0.80387 | 2.84E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene93123 | 0.812783 | 3.56E-51 | -1.69E-46 |
| MS.gene053228 | MS.gene93123 | 0.800933 | 1.14E-48 | -1.69E-46 |
| MS.gene053272 | MS.gene93123 | -0.852874 | 3.47E-61 | -1.69E-46 |
| MS.gene053427 | MS.gene93123 | 0.852565 | 4.25E-61 | -1.69E-46 |
| MS.gene053542 | MS.gene93123 | 0.80752 | 4.86E-50 | -1.69E-46 |
| MS.gene05364 | MS.gene93123 | 0.810306 | 1.23E-50 | -1.69E-46 |
| MS.gene053931 | MS.gene93123 | 0.823672 | 1.22E-53 | -1.69E-46 |
| MS.gene054004 | MS.gene93123 | 0.816288 | 5.97E-52 | -1.69E-46 |
| MS.gene054142 | MS.gene93123 | 0.860938 | 1.46E-63 | -1.69E-46 |
| MS.gene054178 | MS.gene93123 | 0.803515 | 3.36E-49 | -1.69E-46 |
| MS.gene05458 | MS.gene93123 | 0.819038 | 1.43E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene93123 | 0.840784 | 7.06E-58 | -1.69E-46 |
| MS.gene054709 | MS.gene93123 | 0.810775 | 9.74E-51 | -1.69E-46 |
| MS.gene055339 | MS.gene93123 | 0.809142 | 2.19E-50 | -1.69E-46 |
| MS.gene055506 | MS.gene93123 | 0.822837 | 1.91E-53 | -1.69E-46 |
| MS.gene055513 | MS.gene93123 | 0.814622 | 1.40E-51 | -1.69E-46 |
| MS.gene055694 | MS.gene93123 | 0.820968 | 5.18E-53 | -1.69E-46 |
| MS.gene055724 | MS.gene93123 | 0.819582 | 1.08E-52 | -1.69E-46 |
| MS.gene055841 | MS.gene93123 | 0.809403 | 1.93E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene93123 | 0.814558 | 1.45E-51 | -1.69E-46 |
| MS.gene056082 | MS.gene93123 | 0.814261 | 1.69E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene93123 | 0.81459 | 1.43E-51 | -1.69E-46 |
| MS.gene056363 | MS.gene93123 | 0.814215 | 1.73E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene93123 | 0.816372 | 5.72E-52 | -1.69E-46 |
| MS.gene056519 | MS.gene93123 | 0.803755 | 3.00E-49 | -1.69E-46 |
| MS.gene056578 | MS.gene93123 | 0.803794 | 2.94E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene93123 | 0.84068 | 7.52E-58 | -1.69E-46 |
| MS.gene056825 | MS.gene93123 | 0.805767 | 1.14E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene93123 | 0.862824 | 3.85E-64 | -1.69E-46 |
| MS.gene056973 | MS.gene93123 | 0.807502 | 4.90E-50 | -1.69E-46 |
| MS.gene057034 | MS.gene93123 | 0.80417 | 2.46E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene93123 | 0.845995 | 2.87E-59 | -1.69E-46 |
| MS.gene057208 | MS.gene93123 | 0.859016 | 5.54E-63 | -1.69E-46 |
| MS.gene058008 | MS.gene93123 | 0.825292 | 5.08E-54 | -1.69E-46 |
| MS.gene058009 | MS.gene93123 | 0.822692 | 2.07E-53 | -1.69E-46 |
| MS.gene058279 | MS.gene93123 | 0.823236 | 1.54E-53 | -1.69E-46 |
| MS.gene058781 | MS.gene93123 | 0.857319 | 1.77E-62 | -1.69E-46 |
| MS.gene058783 | MS.gene93123 | 0.842524 | 2.45E-58 | -1.69E-46 |
| MS.gene05894 | MS.gene93123 | 0.810113 | 1.35E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene93123 | 0.805892 | 1.07E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene93123 | 0.806623 | 7.52E-50 | -1.69E-46 |
| MS.gene059634 | MS.gene93123 | 0.830493 | 2.85E-55 | -1.69E-46 |
| MS.gene059778 | MS.gene93123 | 0.821962 | 3.05E-53 | -1.69E-46 |
| MS.gene05985 | MS.gene93123 | -0.846858 | 1.67E-59 | -1.69E-46 |
| MS.gene060244 | MS.gene93123 | 0.804917 | 1.72E-49 | -1.69E-46 |
| MS.gene060522 | MS.gene93123 | 0.82829 | 9.76E-55 | -1.69E-46 |
| MS.gene060525 | MS.gene93123 | 0.829868 | 4.05E-55 | -1.69E-46 |
| MS.gene060527 | MS.gene93123 | 0.815425 | 9.30E-52 | -1.69E-46 |
| MS.gene060933 | MS.gene93123 | 0.850873 | 1.28E-60 | -1.69E-46 |
| MS.gene060935 | MS.gene93123 | 0.88917 | 3.08E-73 | -1.69E-46 |
| MS.gene060937 | MS.gene93123 | 0.887685 | 1.15E-72 | -1.69E-46 |
| MS.gene061100 | MS.gene93123 | 0.840276 | 9.59E-58 | -1.69E-46 |
| MS.gene061160 | MS.gene93123 | 0.82314 | 1.63E-53 | -1.69E-46 |
| MS.gene061188 | MS.gene93123 | 0.815628 | 8.39E-52 | -1.69E-46 |
| MS.gene061243 | MS.gene93123 | 0.816116 | 6.53E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene93123 | MS.gene002921 | PPI |
| MS.gene93123 | MS.gene060963 | PPI |
| MS.gene93123 | MS.gene20989 | PPI |
| MS.gene93123 | MS.gene62064 | PPI |
| MS.gene93123 | MS.gene01879 | PPI |
| MS.gene93123 | MS.gene40752 | PPI |
| MS.gene93123 | MS.gene00848 | PPI |
| MS.gene93123 | MS.gene012626 | PPI |
| MS.gene93123 | MS.gene005341 | PPI |
| MS.gene93123 | MS.gene62062 | PPI |
| MS.gene93123 | MS.gene21052 | PPI |
| MS.gene62060 | MS.gene93123 | PPI |
| MS.gene93123 | MS.gene042221 | PPI |
| MS.gene93123 | MS.gene047961 | PPI |
| MS.gene93123 | MS.gene042220 | PPI |
| MS.gene93123 | MS.gene02711 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93123.t1 | MTR_1g114610 | 93.990 | 416 | 25 | 0 | 1 | 416 | 1 | 416 | 0.0 | 786 |
| MS.gene93123.t1 | MTR_7g010500 | 83.333 | 78 | 13 | 0 | 313 | 390 | 48 | 125 | 1.73e-38 | 136 |
| MS.gene93123.t1 | MTR_7g010500 | 44.516 | 155 | 55 | 3 | 1 | 153 | 1 | 126 | 1.46e-23 | 96.3 |
| MS.gene93123.t1 | MTR_2g021030 | 30.699 | 329 | 198 | 6 | 91 | 394 | 200 | 523 | 3.08e-34 | 134 |
| MS.gene93123.t1 | MTR_2g021030 | 28.155 | 412 | 247 | 13 | 16 | 385 | 7 | 411 | 7.92e-34 | 133 |
| MS.gene93123.t1 | MTR_2g021030 | 33.117 | 308 | 199 | 5 | 98 | 403 | 282 | 584 | 4.44e-33 | 131 |
| MS.gene93123.t1 | MTR_2g021030 | 29.952 | 207 | 143 | 2 | 95 | 301 | 385 | 589 | 7.77e-18 | 86.3 |
| MS.gene93123.t1 | MTR_2g021030 | 35.556 | 135 | 86 | 1 | 87 | 221 | 455 | 588 | 7.17e-11 | 64.3 |
| MS.gene93123.t1 | MTR_8g028140 | 27.394 | 376 | 211 | 4 | 20 | 349 | 22 | 381 | 9.96e-33 | 127 |
| MS.gene93123.t1 | MTR_2g021030 | 28.499 | 393 | 251 | 12 | 16 | 400 | 7 | 377 | 5.12e-29 | 118 |
| MS.gene93123.t1 | MTR_2g021030 | 31.250 | 240 | 138 | 5 | 91 | 305 | 200 | 437 | 3.12e-25 | 107 |
| MS.gene93123.t1 | MTR_4g013255 | 26.147 | 436 | 244 | 14 | 18 | 396 | 15 | 429 | 1.29e-27 | 115 |
| MS.gene93123.t1 | MTR_4g013255 | 30.075 | 266 | 158 | 6 | 95 | 336 | 320 | 581 | 5.80e-24 | 104 |
| MS.gene93123.t1 | MTR_4g013255 | 26.176 | 340 | 216 | 9 | 94 | 406 | 241 | 572 | 1.34e-22 | 100 |
| MS.gene93123.t1 | MTR_7g112570 | 25.829 | 422 | 250 | 11 | 20 | 390 | 49 | 458 | 2.11e-27 | 114 |
| MS.gene93123.t1 | MTR_7g112570 | 29.085 | 306 | 182 | 7 | 101 | 404 | 328 | 600 | 2.26e-24 | 105 |
| MS.gene93123.t1 | MTR_7g112570 | 29.353 | 201 | 139 | 2 | 95 | 295 | 401 | 598 | 2.86e-16 | 81.3 |
| MS.gene93123.t1 | MTR_7g112570 | 25.829 | 422 | 250 | 11 | 20 | 390 | 49 | 458 | 2.90e-27 | 114 |
| MS.gene93123.t1 | MTR_7g112570 | 29.967 | 307 | 175 | 8 | 101 | 405 | 328 | 596 | 6.74e-24 | 104 |
| MS.gene93123.t1 | MTR_7g112570 | 29.353 | 201 | 139 | 2 | 95 | 295 | 401 | 598 | 3.17e-16 | 81.3 |
| MS.gene93123.t1 | MTR_7g112570 | 25.592 | 422 | 251 | 10 | 20 | 390 | 49 | 458 | 3.04e-27 | 114 |
| MS.gene93123.t1 | MTR_7g112570 | 28.571 | 308 | 185 | 7 | 101 | 406 | 328 | 602 | 2.90e-24 | 105 |
| MS.gene93123.t1 | MTR_7g112570 | 25.828 | 302 | 192 | 6 | 95 | 371 | 350 | 644 | 5.52e-19 | 89.7 |
| MS.gene93123.t1 | MTR_4g114640 | 26.303 | 422 | 274 | 10 | 18 | 407 | 62 | 478 | 2.41e-26 | 112 |
| MS.gene93123.t1 | MTR_4g114640 | 27.740 | 292 | 205 | 6 | 103 | 391 | 332 | 620 | 1.28e-18 | 88.6 |
| MS.gene93123.t1 | MTR_4g114640 | 31.122 | 196 | 131 | 4 | 94 | 286 | 428 | 622 | 1.64e-15 | 79.0 |
| MS.gene93123.t1 | MTR_1g012520 | 26.698 | 427 | 272 | 10 | 18 | 407 | 66 | 488 | 2.45e-24 | 105 |
| MS.gene93123.t1 | MTR_1g012520 | 25.526 | 333 | 216 | 5 | 95 | 397 | 306 | 636 | 2.78e-22 | 99.8 |
| MS.gene93123.t1 | MTR_1g012520 | 27.273 | 352 | 213 | 8 | 94 | 410 | 175 | 518 | 5.33e-22 | 99.0 |
| MS.gene93123.t1 | MTR_1g012520 | 24.642 | 349 | 221 | 9 | 93 | 406 | 226 | 567 | 3.79e-17 | 84.0 |
| MS.gene93123.t1 | MTR_1g029500 | 31.159 | 276 | 161 | 6 | 66 | 328 | 78 | 337 | 4.74e-24 | 102 |
| MS.gene93123.t1 | MTR_1g029500 | 32.710 | 214 | 129 | 4 | 146 | 346 | 101 | 312 | 2.68e-21 | 94.7 |
| MS.gene93123.t1 | MTR_3g107280 | 26.969 | 419 | 250 | 13 | 18 | 394 | 69 | 473 | 7.44e-24 | 104 |
| MS.gene93123.t1 | MTR_3g107280 | 27.723 | 303 | 155 | 6 | 90 | 332 | 325 | 623 | 7.04e-17 | 83.2 |
| MS.gene93123.t1 | MTR_3g107280 | 24.415 | 299 | 195 | 5 | 95 | 390 | 304 | 574 | 3.13e-16 | 81.3 |
| MS.gene93123.t1 | MTR_3g107280 | 28.409 | 176 | 123 | 3 | 113 | 286 | 456 | 630 | 5.10e-13 | 71.2 |
| MS.gene93123.t1 | MTR_8g028140 | 27.336 | 289 | 163 | 2 | 107 | 349 | 14 | 301 | 9.63e-24 | 101 |
| MS.gene93123.t1 | MTR_3g088895 | 31.797 | 217 | 130 | 5 | 146 | 346 | 114 | 328 | 5.69e-22 | 97.1 |
| MS.gene93123.t1 | MTR_3g088895 | 27.469 | 324 | 203 | 7 | 25 | 323 | 47 | 363 | 2.09e-20 | 92.4 |
| MS.gene93123.t1 | MTR_1g054625 | 27.059 | 255 | 155 | 3 | 84 | 309 | 81 | 333 | 9.82e-20 | 90.1 |
| MS.gene93123.t1 | MTR_1g054625 | 27.402 | 281 | 191 | 7 | 107 | 381 | 78 | 351 | 1.26e-19 | 89.7 |
| MS.gene93123.t1 | MTR_1g054625 | 28.444 | 225 | 134 | 2 | 110 | 309 | 14 | 236 | 3.50e-19 | 87.0 |
| MS.gene93123.t1 | MTR_1g054625 | 28.226 | 248 | 169 | 6 | 136 | 381 | 14 | 254 | 5.87e-18 | 83.6 |
| MS.gene93123.t1 | MTR_1g054625 | 34.555 | 191 | 115 | 6 | 90 | 275 | 44 | 229 | 1.41e-17 | 82.4 |
| MS.gene93123.t1 | MTR_4g125440 | 26.592 | 267 | 184 | 8 | 95 | 357 | 411 | 669 | 7.91e-17 | 83.2 |
| MS.gene93123.t1 | MTR_4g125440 | 33.514 | 185 | 118 | 3 | 162 | 341 | 369 | 553 | 1.55e-16 | 82.0 |
| MS.gene93123.t1 | MTR_4g125440 | 30.846 | 201 | 131 | 4 | 75 | 273 | 470 | 664 | 3.81e-12 | 68.6 |
| MS.gene93123.t1 | MTR_4g125410 | 28.195 | 266 | 181 | 7 | 95 | 357 | 175 | 433 | 8.12e-17 | 82.4 |
| MS.gene93123.t1 | MTR_4g125410 | 32.195 | 205 | 128 | 5 | 144 | 341 | 117 | 317 | 7.26e-16 | 79.7 |
| MS.gene93123.t1 | MTR_4g125410 | 27.863 | 262 | 179 | 7 | 133 | 390 | 161 | 416 | 3.49e-13 | 71.2 |
| MS.gene93123.t1 | MTR_4g125410 | 30.622 | 209 | 137 | 4 | 67 | 273 | 226 | 428 | 3.84e-11 | 65.1 |
| MS.gene93123.t1 | MTR_4g125440 | 33.514 | 185 | 118 | 3 | 162 | 341 | 369 | 553 | 1.41e-16 | 82.0 |
| MS.gene93123.t1 | MTR_4g094932 | 25.837 | 418 | 259 | 14 | 6 | 386 | 32 | 435 | 3.59e-16 | 80.9 |
| MS.gene93123.t1 | MTR_4g114650 | 24.821 | 419 | 255 | 13 | 18 | 407 | 57 | 444 | 3.85e-16 | 80.9 |
| MS.gene93123.t1 | MTR_4g114650 | 29.949 | 197 | 134 | 4 | 94 | 287 | 394 | 589 | 2.53e-15 | 78.6 |
| MS.gene93123.t1 | MTR_4g114650 | 25.887 | 282 | 201 | 7 | 113 | 390 | 255 | 532 | 2.74e-15 | 78.2 |
| MS.gene93123.t1 | MTR_4g114650 | 24.821 | 419 | 255 | 13 | 18 | 407 | 112 | 499 | 4.04e-16 | 80.9 |
| MS.gene93123.t1 | MTR_4g114650 | 30.102 | 196 | 133 | 4 | 94 | 286 | 449 | 643 | 2.38e-15 | 78.6 |
| MS.gene93123.t1 | MTR_4g114650 | 25.887 | 282 | 201 | 7 | 113 | 390 | 310 | 587 | 3.31e-15 | 78.2 |
| MS.gene93123.t1 | MTR_4g114650 | 24.821 | 419 | 255 | 13 | 18 | 407 | 61 | 448 | 4.38e-16 | 80.9 |
| MS.gene93123.t1 | MTR_4g114650 | 29.949 | 197 | 134 | 4 | 94 | 287 | 398 | 593 | 3.01e-15 | 78.2 |
| MS.gene93123.t1 | MTR_4g114650 | 25.887 | 282 | 201 | 7 | 113 | 390 | 259 | 536 | 3.17e-15 | 78.2 |
| MS.gene93123.t1 | MTR_3g408430 | 24.471 | 425 | 254 | 14 | 3 | 393 | 47 | 438 | 4.63e-15 | 77.4 |
| MS.gene93123.t1 | MTR_4g024200 | 22.222 | 423 | 262 | 12 | 39 | 403 | 38 | 451 | 1.59e-14 | 75.5 |
| MS.gene93123.t1 | MTR_4g036815 | 26.076 | 395 | 248 | 18 | 20 | 393 | 82 | 453 | 3.74e-14 | 74.3 |
| MS.gene93123.t1 | MTR_4g036815 | 29.167 | 216 | 124 | 6 | 81 | 270 | 252 | 464 | 5.29e-12 | 67.8 |
| MS.gene93123.t1 | MTR_3g465770 | 24.742 | 291 | 186 | 7 | 113 | 403 | 302 | 559 | 4.03e-14 | 74.7 |
| MS.gene93123.t1 | MTR_3g465770 | 21.795 | 312 | 203 | 6 | 117 | 391 | 140 | 447 | 4.32e-12 | 68.2 |
| MS.gene93123.t1 | MTR_1g018790 | 23.961 | 409 | 190 | 13 | 23 | 346 | 66 | 438 | 4.34e-14 | 74.3 |
| MS.gene93123.t1 | MTR_3g110740 | 27.962 | 211 | 138 | 5 | 173 | 379 | 314 | 514 | 1.49e-12 | 69.7 |
| MS.gene93123.t1 | MTR_4g130620 | 26.538 | 260 | 152 | 7 | 20 | 245 | 12 | 266 | 4.02e-12 | 67.0 |
| MS.gene93123.t1 | MTR_3g110150 | 26.531 | 245 | 129 | 5 | 43 | 239 | 24 | 265 | 4.03e-12 | 67.0 |
| MS.gene93123.t1 | MTR_1g015450 | 25.000 | 292 | 177 | 9 | 135 | 403 | 361 | 633 | 9.29e-12 | 67.4 |
| MS.gene93123.t1 | MTR_1g015450 | 24.211 | 380 | 193 | 14 | 110 | 414 | 435 | 794 | 8.15e-11 | 64.7 |
| MS.gene93123.t1 | MTR_2g041610 | 26.923 | 260 | 168 | 10 | 95 | 343 | 416 | 664 | 4.13e-11 | 65.5 |
| MS.gene93123.t1 | MTR_1g114010 | 23.699 | 346 | 232 | 9 | 95 | 414 | 80 | 419 | 6.02e-11 | 64.3 |
| MS.gene93123.t1 | MTR_4g019320 | 22.747 | 233 | 148 | 2 | 92 | 292 | 274 | 506 | 6.10e-11 | 64.7 |
| MS.gene93123.t1 | MTR_4g019320 | 24.242 | 297 | 180 | 6 | 106 | 368 | 242 | 527 | 6.72e-11 | 64.3 |
| MS.gene93123.t1 | MTR_1g114010 | 23.699 | 346 | 232 | 9 | 95 | 414 | 71 | 410 | 6.13e-11 | 64.3 |
| MS.gene93123.t1 | MTR_2g018910 | 30.769 | 156 | 99 | 5 | 96 | 246 | 112 | 263 | 6.25e-11 | 63.5 |
| MS.gene93123.t1 | MTR_4g008420 | 26.619 | 278 | 181 | 8 | 20 | 286 | 33 | 298 | 6.59e-11 | 63.5 |
| MS.gene93123.t1 | MTR_1g114010 | 23.699 | 346 | 232 | 9 | 95 | 414 | 231 | 570 | 7.07e-11 | 64.7 |
| MS.gene93123.t1 | MTR_1g114010 | 23.699 | 346 | 232 | 9 | 95 | 414 | 150 | 489 | 7.36e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93123.t1 | AT5G23340 | 71.921 | 406 | 113 | 1 | 11 | 416 | 1 | 405 | 0.0 | 590 |
| MS.gene93123.t1 | AT4G15475 | 33.119 | 311 | 201 | 4 | 95 | 403 | 279 | 584 | 8.56e-38 | 145 |
| MS.gene93123.t1 | AT4G15475 | 29.936 | 314 | 213 | 5 | 85 | 398 | 221 | 527 | 1.64e-32 | 129 |
| MS.gene93123.t1 | AT4G15475 | 24.788 | 472 | 256 | 12 | 16 | 394 | 7 | 472 | 4.79e-24 | 105 |
| MS.gene93123.t1 | AT4G15475 | 31.073 | 177 | 95 | 3 | 94 | 244 | 410 | 585 | 1.88e-14 | 75.9 |
| MS.gene93123.t1 | AT4G15475 | 36.066 | 122 | 77 | 1 | 101 | 221 | 467 | 588 | 2.72e-11 | 65.9 |
| MS.gene93123.t1 | AT3G07550 | 27.632 | 380 | 206 | 10 | 20 | 349 | 18 | 378 | 7.46e-28 | 114 |
| MS.gene93123.t1 | AT3G07550 | 27.632 | 380 | 206 | 10 | 20 | 349 | 18 | 378 | 7.46e-28 | 114 |
| MS.gene93123.t1 | AT5G01720 | 27.103 | 321 | 204 | 5 | 94 | 390 | 238 | 552 | 1.07e-27 | 115 |
| MS.gene93123.t1 | AT5G01720 | 24.105 | 419 | 204 | 9 | 37 | 379 | 34 | 414 | 7.43e-22 | 98.6 |
| MS.gene93123.t1 | AT5G01720 | 36.806 | 144 | 88 | 3 | 118 | 261 | 441 | 581 | 8.29e-17 | 83.2 |
| MS.gene93123.t1 | AT5G01720 | 25.850 | 294 | 162 | 6 | 95 | 364 | 316 | 577 | 8.99e-17 | 82.8 |
| MS.gene93123.t1 | AT2G25490 | 26.526 | 426 | 263 | 10 | 18 | 407 | 65 | 476 | 1.29e-27 | 115 |
| MS.gene93123.t1 | AT2G25490 | 26.287 | 369 | 199 | 11 | 85 | 391 | 258 | 615 | 1.14e-20 | 94.7 |
| MS.gene93123.t1 | AT3G07550 | 28.099 | 363 | 199 | 9 | 20 | 349 | 18 | 351 | 3.66e-27 | 111 |
| MS.gene93123.t1 | AT3G58530 | 30.350 | 257 | 170 | 6 | 107 | 359 | 80 | 331 | 1.13e-26 | 110 |
| MS.gene93123.t1 | AT3G58530 | 31.351 | 185 | 123 | 4 | 95 | 278 | 150 | 331 | 2.40e-15 | 77.4 |
| MS.gene93123.t1 | AT3G58530 | 26.978 | 278 | 164 | 6 | 68 | 309 | 61 | 335 | 4.75e-15 | 76.6 |
| MS.gene93123.t1 | AT3G58530 | 22.794 | 272 | 168 | 7 | 117 | 379 | 60 | 298 | 6.09e-12 | 67.0 |
| MS.gene93123.t1 | AT1G77000 | 34.066 | 182 | 115 | 3 | 121 | 301 | 104 | 281 | 8.24e-24 | 102 |
| MS.gene93123.t1 | AT1G77000 | 30.147 | 272 | 160 | 6 | 71 | 318 | 85 | 350 | 3.70e-22 | 97.4 |
| MS.gene93123.t1 | AT1G77000 | 31.443 | 194 | 108 | 3 | 60 | 234 | 127 | 314 | 4.39e-17 | 82.4 |
| MS.gene93123.t1 | AT1G77000 | 34.066 | 182 | 115 | 3 | 121 | 301 | 104 | 281 | 8.24e-24 | 102 |
| MS.gene93123.t1 | AT1G77000 | 30.147 | 272 | 160 | 6 | 71 | 318 | 85 | 350 | 3.70e-22 | 97.4 |
| MS.gene93123.t1 | AT1G77000 | 31.443 | 194 | 108 | 3 | 60 | 234 | 127 | 314 | 4.39e-17 | 82.4 |
| MS.gene93123.t1 | AT5G27920 | 27.397 | 292 | 196 | 7 | 113 | 401 | 330 | 608 | 9.00e-23 | 101 |
| MS.gene93123.t1 | AT5G27920 | 26.648 | 364 | 230 | 8 | 78 | 414 | 221 | 574 | 1.07e-21 | 97.8 |
| MS.gene93123.t1 | AT1G21410 | 28.881 | 277 | 167 | 5 | 71 | 323 | 85 | 355 | 2.05e-22 | 98.2 |
| MS.gene93123.t1 | AT1G21410 | 28.632 | 234 | 152 | 7 | 118 | 345 | 55 | 279 | 1.82e-18 | 86.7 |
| MS.gene93123.t1 | AT1G21410 | 28.788 | 198 | 135 | 5 | 165 | 360 | 69 | 262 | 3.14e-14 | 73.9 |
| MS.gene93123.t1 | AT1G21410 | 28.881 | 277 | 167 | 5 | 71 | 323 | 85 | 355 | 2.05e-22 | 98.2 |
| MS.gene93123.t1 | AT1G21410 | 28.632 | 234 | 152 | 7 | 118 | 345 | 55 | 279 | 1.82e-18 | 86.7 |
| MS.gene93123.t1 | AT1G21410 | 28.788 | 198 | 135 | 5 | 165 | 360 | 69 | 262 | 3.14e-14 | 73.9 |
| MS.gene93123.t1 | AT5G25350 | 25.132 | 378 | 259 | 8 | 18 | 386 | 56 | 418 | 1.81e-19 | 91.3 |
| MS.gene93123.t1 | AT5G25350 | 21.569 | 408 | 210 | 5 | 93 | 391 | 204 | 610 | 1.61e-16 | 82.0 |
| MS.gene93123.t1 | AT5G25350 | 27.211 | 294 | 154 | 7 | 119 | 406 | 120 | 359 | 2.24e-16 | 81.6 |
| MS.gene93123.t1 | AT5G25350 | 25.574 | 305 | 167 | 8 | 94 | 339 | 309 | 612 | 2.04e-12 | 69.3 |
| MS.gene93123.t1 | AT1G77000 | 34.043 | 141 | 92 | 1 | 87 | 226 | 96 | 236 | 3.92e-16 | 78.2 |
| MS.gene93123.t1 | AT1G77000 | 34.899 | 149 | 94 | 3 | 103 | 249 | 85 | 232 | 8.17e-16 | 77.4 |
| MS.gene93123.t1 | AT1G77000 | 33.588 | 131 | 85 | 2 | 146 | 275 | 103 | 232 | 1.08e-12 | 68.2 |
| MS.gene93123.t1 | AT1G77000 | 34.043 | 141 | 92 | 1 | 87 | 226 | 96 | 236 | 3.92e-16 | 78.2 |
| MS.gene93123.t1 | AT1G77000 | 34.899 | 149 | 94 | 3 | 103 | 249 | 85 | 232 | 8.17e-16 | 77.4 |
| MS.gene93123.t1 | AT1G77000 | 33.588 | 131 | 85 | 2 | 146 | 275 | 103 | 232 | 1.08e-12 | 68.2 |
| MS.gene93123.t1 | AT5G51380 | 25.654 | 382 | 250 | 14 | 28 | 393 | 75 | 438 | 8.43e-15 | 76.6 |
| MS.gene93123.t1 | AT1G55590 | 25.540 | 278 | 171 | 8 | 121 | 391 | 265 | 513 | 9.65e-15 | 76.6 |
| MS.gene93123.t1 | AT1G55590 | 25.733 | 307 | 195 | 9 | 78 | 361 | 246 | 542 | 3.44e-12 | 68.6 |
| MS.gene93123.t1 | AT4G07400 | 26.107 | 429 | 247 | 17 | 23 | 394 | 79 | 494 | 1.01e-14 | 76.3 |
| MS.gene93123.t1 | AT1G47056 | 24.942 | 433 | 207 | 16 | 8 | 359 | 31 | 426 | 2.33e-14 | 75.1 |
| MS.gene93123.t1 | AT1G80570 | 27.928 | 333 | 213 | 8 | 18 | 325 | 2 | 332 | 2.60e-14 | 75.1 |
| MS.gene93123.t1 | AT1G80570 | 27.928 | 333 | 213 | 8 | 18 | 325 | 2 | 332 | 2.60e-14 | 75.1 |
| MS.gene93123.t1 | AT1G80570 | 27.928 | 333 | 213 | 8 | 18 | 325 | 15 | 345 | 2.95e-14 | 74.7 |
| MS.gene93123.t1 | AT5G51370 | 28.980 | 245 | 163 | 8 | 95 | 334 | 159 | 397 | 4.43e-14 | 73.9 |
| MS.gene93123.t1 | AT2G06040 | 32.843 | 204 | 124 | 7 | 110 | 307 | 538 | 734 | 5.84e-14 | 74.3 |
| MS.gene93123.t1 | AT2G17020 | 27.972 | 286 | 185 | 7 | 121 | 390 | 72 | 352 | 3.85e-13 | 71.2 |
| MS.gene93123.t1 | AT2G17020 | 27.972 | 286 | 185 | 7 | 121 | 390 | 213 | 493 | 4.08e-13 | 71.6 |
| MS.gene93123.t1 | AT5G21900 | 32.667 | 150 | 100 | 1 | 113 | 262 | 367 | 515 | 8.90e-13 | 70.5 |
| MS.gene93123.t1 | AT2G17020 | 27.972 | 286 | 185 | 7 | 121 | 390 | 246 | 526 | 1.03e-12 | 70.5 |
| MS.gene93123.t1 | AT4G33210 | 25.436 | 287 | 176 | 10 | 135 | 398 | 370 | 641 | 3.07e-12 | 69.3 |
| MS.gene93123.t1 | AT4G33210 | 26.061 | 330 | 202 | 10 | 83 | 403 | 685 | 981 | 3.40e-11 | 65.9 |
| MS.gene93123.t1 | AT1G80630 | 23.729 | 236 | 147 | 4 | 94 | 302 | 279 | 508 | 7.33e-12 | 67.8 |
| MS.gene93123.t1 | AT5G51370 | 31.683 | 202 | 128 | 7 | 95 | 291 | 159 | 355 | 3.67e-11 | 64.7 |
Find 93 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACGACGCAATAAAGTTTC+TGG | 0.239773 | 1.1:+80498136 | MS.gene93123:CDS |
| TTGCGGATATTGCATCTTAC+TGG | 0.249601 | 1.1:+80497783 | MS.gene93123:CDS |
| ACCTCACATGCTTCGTAAAA+TGG | 0.250421 | 1.1:+80496771 | MS.gene93123:CDS |
| GATCTCGCTGTTATTGCTAA+TGG | 0.255740 | 1.1:+80496874 | MS.gene93123:CDS |
| CGACGAGCTTCGTTCGATTC+TGG | 0.287693 | 1.1:+80496645 | MS.gene93123:CDS |
| CTTTGATCATTGGTGGTTGC+CGG | 0.293733 | 1.1:+80498105 | MS.gene93123:CDS |
| ATCTCGCTGTTATTGCTAAT+GGG | 0.304684 | 1.1:+80496875 | MS.gene93123:CDS |
| CCTTGCAAAAGTCAGGTAAA+TGG | 0.311062 | 1.1:-80498484 | None:intergenic |
| GAATTTAGCCAACGATAATA+TGG | 0.315400 | 1.1:-80498066 | None:intergenic |
| TGTTAGATTGCAACAAAGTT+GGG | 0.324521 | 1.1:+80498036 | MS.gene93123:CDS |
| ATACCAACCACTGTGATCTT+TGG | 0.325643 | 1.1:-80498368 | None:intergenic |
| CACATCCAAGGACTGTAATA+AGG | 0.340648 | 1.1:-80497700 | None:intergenic |
| TGCGGAAAGCTTCTTCCTTT+CGG | 0.341317 | 1.1:-80496740 | None:intergenic |
| TGCATCTTCTGAAGTTGAAT+TGG | 0.346452 | 1.1:-80496587 | None:intergenic |
| ATAATAATTTACAGGAATTA+CGG | 0.349577 | 1.1:+80497644 | MS.gene93123:intron |
| GGCTAAATTCTGTGATAATC+TGG | 0.376470 | 1.1:+80498079 | MS.gene93123:CDS |
| AGACAAGGAAACGTTTGGTT+TGG | 0.404540 | 1.1:+80496687 | MS.gene93123:CDS |
| ATGCATAAACGAAGCATTAA+CGG | 0.407146 | 1.1:+80496621 | MS.gene93123:CDS |
| ATCTCACATCCAAGTATTCC+AGG | 0.407256 | 1.1:-80498418 | None:intergenic |
| TCTTTCCTTATTACAGTCCT+TGG | 0.411987 | 1.1:+80497695 | MS.gene93123:CDS |
| GCAGTAATGTCACTGACGTT+GGG | 0.415773 | 1.1:+80497964 | MS.gene93123:CDS |
| GGCGGATAGGTTCACATGCT+TGG | 0.425899 | 1.1:+80496792 | MS.gene93123:CDS |
| TTTACAGGAATTACGGATGT+TGG | 0.428101 | 1.1:+80497651 | MS.gene93123:intron |
| ATGCAGTTACCTGGAATACT+TGG | 0.430989 | 1.1:+80498409 | MS.gene93123:CDS |
| TGCAGAAAGTTGACCGATAA+GGG | 0.431000 | 1.1:+80497729 | MS.gene93123:CDS |
| CCGCAAGTCACAACAGCCTT+TGG | 0.431251 | 1.1:-80497766 | None:intergenic |
| GTTTCTCGTTCGTTCTATCC+TGG | 0.433887 | 1.1:+80496838 | MS.gene93123:CDS |
| AAGATCACAGTGGTTGGTAT+AGG | 0.435567 | 1.1:+80498371 | MS.gene93123:CDS |
| TACTGGGTGCAGATTTGTTA+CGG | 0.445534 | 1.1:+80497800 | MS.gene93123:CDS |
| TGGTTTGCAAGCGATGGCTT+CGG | 0.452736 | 1.1:+80496707 | MS.gene93123:CDS |
| TTGTTAGATTGCAACAAAGT+TGG | 0.452825 | 1.1:+80498035 | MS.gene93123:CDS |
| TGGGGTTTCGAGTATTTGTA+AGG | 0.455772 | 1.1:+80497983 | MS.gene93123:CDS |
| CTGCAGAAAGTTGACCGATA+AGG | 0.456570 | 1.1:+80497728 | MS.gene93123:CDS |
| CTCAATTTGCATAACTGTAA+AGG | 0.456727 | 1.1:+80496916 | MS.gene93123:CDS |
| AACAGCGGACAATCCCTTAT+CGG | 0.460958 | 1.1:-80497742 | None:intergenic |
| CTTTACAGTTATGCAAATTG+AGG | 0.464854 | 1.1:-80496915 | None:intergenic |
| AAATTAACCTTGCAAAAGTC+AGG | 0.466332 | 1.1:-80498491 | None:intergenic |
| TTTACGAAGCATGTGAGGTC+CGG | 0.473276 | 1.1:-80496767 | None:intergenic |
| AGGCTGGCCTTTGTAATATG+TGG | 0.481605 | 1.1:-80498446 | None:intergenic |
| TGTCTAAATACTTGATCCGT+TGG | 0.483760 | 1.1:-80497932 | None:intergenic |
| TTGGTTTGGTTTGCAAGCGA+TGG | 0.484765 | 1.1:+80496701 | MS.gene93123:CDS |
| CTAATGGGTTTAGATGTTTG+AGG | 0.485032 | 1.1:+80496890 | MS.gene93123:CDS |
| CTGTCGTAATTTAGAAGAGT+TGG | 0.486468 | 1.1:+80497851 | MS.gene93123:CDS |
| CTGGAGACTTTGATCATTGG+TGG | 0.487556 | 1.1:+80498098 | MS.gene93123:CDS |
| ATGCAGAAACCTTGAGGCGC+TGG | 0.488076 | 1.1:+80498247 | MS.gene93123:CDS |
| AACCTTGAGGCGCTGGACAT+TGG | 0.495632 | 1.1:+80498254 | MS.gene93123:CDS |
| TTTGATCATTGGTGGTTGCC+GGG | 0.505872 | 1.1:+80498106 | MS.gene93123:CDS |
| TGCGGATATTGCATCTTACT+GGG | 0.514273 | 1.1:+80497784 | MS.gene93123:CDS |
| TGTGGGTAAATGCAGTTACC+TGG | 0.518718 | 1.1:+80498400 | MS.gene93123:CDS |
| AATCTGGAGACTTTGATCAT+TGG | 0.521970 | 1.1:+80498095 | MS.gene93123:CDS |
| GATGTTGGAATGAAAGCTAT+TGG | 0.522977 | 1.1:+80497666 | MS.gene93123:CDS |
| CAGAAACTTTATTGCGTCGT+CGG | 0.532600 | 1.1:-80498135 | None:intergenic |
| AAGAAGCTTTCCGCACGTGC+CGG | 0.534156 | 1.1:+80496748 | MS.gene93123:CDS |
| AAGGCCAGCCTTGATGAGGC+TGG | 0.538770 | 1.1:+80498458 | MS.gene93123:CDS |
| TCCGTTGGCAACCACTTGCA+AGG | 0.540095 | 1.1:-80497917 | None:intergenic |
| GAAACCAGCCTCATCAAGGC+TGG | 0.540347 | 1.1:-80498462 | None:intergenic |
| GGTTGGTATAGGCATTCTTG+TGG | 0.542290 | 1.1:+80498382 | MS.gene93123:CDS |
| GGCTGGCCTTTGTAATATGT+GGG | 0.544226 | 1.1:-80498445 | None:intergenic |
| TGCAGTAATGTCACTGACGT+TGG | 0.545562 | 1.1:+80497963 | MS.gene93123:CDS |
| GCACAAGTATCACTGACAAT+GGG | 0.552325 | 1.1:+80497886 | MS.gene93123:CDS |
| TTGCGTCGTCGGAGACATCC+CGG | 0.554094 | 1.1:-80498124 | None:intergenic |
| GTTGGTATAGGCATTCTTGT+GGG | 0.554268 | 1.1:+80498383 | MS.gene93123:CDS |
| TGCACAAGTATCACTGACAA+TGG | 0.559237 | 1.1:+80497885 | MS.gene93123:CDS |
| CAGTATCAAAGAAGAACAGC+GGG | 0.562714 | 1.1:-80498533 | None:intergenic |
| GGATGAAGCCATATTATCGT+TGG | 0.568535 | 1.1:+80498058 | MS.gene93123:CDS |
| TTAGAAGAGTTGGTATCGCA+AGG | 0.571643 | 1.1:+80497861 | MS.gene93123:CDS |
| CATGTGAGGTCCGGCACGTG+CGG | 0.571811 | 1.1:-80496758 | None:intergenic |
| AACGAGAAACAGACTGAGCA+AGG | 0.573152 | 1.1:-80496825 | None:intergenic |
| GTTAGATTGCAACAAAGTTG+GGG | 0.573318 | 1.1:+80498037 | MS.gene93123:CDS |
| CCAAAGGCTGTTGTGACTTG+CGG | 0.582732 | 1.1:+80497766 | MS.gene93123:CDS |
| CAGTAATGTCACTGACGTTG+GGG | 0.590222 | 1.1:+80497965 | MS.gene93123:CDS |
| AAAATCTTCAAACTCAAACC+AGG | 0.590259 | 1.1:-80498329 | None:intergenic |
| GCCTTGCAAGTGGTTGCCAA+CGG | 0.590977 | 1.1:+80497916 | MS.gene93123:CDS |
| AATGGAAACCAGCCTCATCA+AGG | 0.591066 | 1.1:-80498466 | None:intergenic |
| GGATTGTCCGCTGTTGCCAA+AGG | 0.592512 | 1.1:+80497750 | MS.gene93123:CDS |
| ATCGGTCAACTTTCTGCAGT+AGG | 0.593129 | 1.1:-80497724 | None:intergenic |
| TGTCCAAAGATCACAGTGGT+TGG | 0.596825 | 1.1:+80498365 | MS.gene93123:CDS |
| TACAAAGGCCAGCCTTGATG+AGG | 0.616069 | 1.1:+80498454 | MS.gene93123:CDS |
| AAGTCAATGCAGAAACCTTG+AGG | 0.622015 | 1.1:+80498241 | MS.gene93123:CDS |
| TGCTTCGTAAAATGGCGGAT+AGG | 0.632749 | 1.1:+80496779 | MS.gene93123:CDS |
| GGACATTGGTTGCTGTGAAG+AGG | 0.637833 | 1.1:+80498268 | MS.gene93123:CDS |
| AACCAATGTCCAGCGCCTCA+AGG | 0.645063 | 1.1:-80498256 | None:intergenic |
| TTCGGTTACAGAGCACCGAA+AGG | 0.647830 | 1.1:+80496725 | MS.gene93123:CDS |
| ATCATGCCCACATATTACAA+AGG | 0.655004 | 1.1:+80498439 | MS.gene93123:CDS |
| ACAACAGCCTTTGGCAACAG+CGG | 0.655606 | 1.1:-80497757 | None:intergenic |
| AGATCAGAATCAGTAACACC+AGG | 0.663167 | 1.1:-80496856 | None:intergenic |
| TCTGCAGTAGGACACATCCA+AGG | 0.671070 | 1.1:-80497712 | None:intergenic |
| TCACATGCTTCGTAAAATGG+CGG | 0.678714 | 1.1:+80496774 | MS.gene93123:CDS |
| GGAATGAAAGCTATTGGTGA+CGG | 0.691647 | 1.1:+80497672 | MS.gene93123:CDS |
| ACAGTATCAAAGAAGAACAG+CGG | 0.709643 | 1.1:-80498534 | None:intergenic |
| TGCTTCGTTTATGCATAACG+CGG | 0.712266 | 1.1:-80496614 | None:intergenic |
| GGGCTGATAAGCCTTGCAAG+TGG | 0.747702 | 1.1:+80497906 | MS.gene93123:CDS |
| TAATTGTCCAAAGATCACAG+TGG | 0.819306 | 1.1:+80498361 | MS.gene93123:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATTTACAGGAATTA+CGG | + | chr1.1:80497644-80497663 | MS.gene93123:intron | 15.0% |
| !! | TAATAAGAGAAAACATTAAA+TGG | - | chr1.1:80497557-80497576 | None:intergenic | 15.0% |
| !!! | AAATTCAAATTTGAGTTTAA+TGG | + | chr1.1:80497602-80497621 | MS.gene93123:intron | 15.0% |
| !!! | AATTCAAATTTGAGTTTAAT+GGG | + | chr1.1:80497603-80497622 | MS.gene93123:intron | 15.0% |
| !!! | ATTGCTTTAAATATTCAATT+TGG | + | chr1.1:80497576-80497595 | MS.gene93123:intron | 15.0% |
| !! | AAAATACTAATTCATTAGGT+AGG | - | chr1.1:80497337-80497356 | None:intergenic | 20.0% |
| !!! | ACCTAATGAATTAGTATTTT+GGG | + | chr1.1:80497337-80497356 | MS.gene93123:intron | 20.0% |
| !!! | ATTCAAATTTGAGTTTAATG+GGG | + | chr1.1:80497604-80497623 | MS.gene93123:intron | 20.0% |
| !!! | TACCTAATGAATTAGTATTT+TGG | + | chr1.1:80497336-80497355 | MS.gene93123:intron | 20.0% |
| !!! | TTTTGCAAGGTTAATTTTAA+TGG | + | chr1.1:80498497-80498516 | MS.gene93123:CDS | 20.0% |
| ! | TCCCAAAATACTAATTCATT+AGG | - | chr1.1:80497341-80497360 | None:intergenic | 25.0% |
| ! | TTTGTTTAATTGTTTCCGAT+GGG | + | chr1.1:80497070-80497089 | MS.gene93123:intron | 25.0% |
| !! | TTTTCACATTTTAAGCAATG+AGG | + | chr1.1:80498304-80498323 | MS.gene93123:CDS | 25.0% |
| !!! | GTGTGTTGATAATAATTTAC+AGG | + | chr1.1:80497636-80497655 | MS.gene93123:intron | 25.0% |
| !!! | GTTGTTTTCATTGAGATTAT+TGG | + | chr1.1:80497197-80497216 | MS.gene93123:intron | 25.0% |
| !!! | TTTTGTTTAATTGTTTCCGA+TGG | + | chr1.1:80497069-80497088 | MS.gene93123:intron | 25.0% |
| AAAACACTAGTAGTCATTAG+TGG | - | chr1.1:80497142-80497161 | None:intergenic | 30.0% | |
| AAAATCTTCAAACTCAAACC+AGG | - | chr1.1:80498332-80498351 | None:intergenic | 30.0% | |
| AAACACTAGTAGTCATTAGT+GGG | - | chr1.1:80497141-80497160 | None:intergenic | 30.0% | |
| AAATTAACCTTGCAAAAGTC+AGG | - | chr1.1:80498494-80498513 | None:intergenic | 30.0% | |
| AGGTAAAATTAAAAGCCCAT+CGG | - | chr1.1:80497088-80497107 | None:intergenic | 30.0% | |
| ATATGTGTGATTACTGATGA+AGG | + | chr1.1:80497519-80497538 | MS.gene93123:intron | 30.0% | |
| CAAGTAGTGGTGTATTATTA+TGG | + | chr1.1:80497257-80497276 | MS.gene93123:intron | 30.0% | |
| CAGAGCATAAACTTAACTTA+AGG | - | chr1.1:80497177-80497196 | None:intergenic | 30.0% | |
| CATAAACTTAACTTAAGGAG+AGG | - | chr1.1:80497172-80497191 | None:intergenic | 30.0% | |
| CTCAATTTGCATAACTGTAA+AGG | + | chr1.1:80496916-80496935 | MS.gene93123:CDS | 30.0% | |
| CTTAAGTTAAGTTTATGCTC+TGG | + | chr1.1:80497175-80497194 | MS.gene93123:intron | 30.0% | |
| CTTTACAGTTATGCAAATTG+AGG | - | chr1.1:80496918-80496937 | None:intergenic | 30.0% | |
| GAAACAACCTTAAAAACTTG+AGG | + | chr1.1:80498171-80498190 | MS.gene93123:CDS | 30.0% | |
| GAATTTAGCCAACGATAATA+TGG | - | chr1.1:80498069-80498088 | None:intergenic | 30.0% | |
| GCTAATAAGTTTCTCTTCTT+AGG | - | chr1.1:80497108-80497127 | None:intergenic | 30.0% | |
| TGTTAGATTGCAACAAAGTT+GGG | + | chr1.1:80498036-80498055 | MS.gene93123:CDS | 30.0% | |
| TTAAAAACTTGAGGATGGAT+TGG | + | chr1.1:80498180-80498199 | MS.gene93123:CDS | 30.0% | |
| TTAGATGAGACTATCAAATG+TGG | - | chr1.1:80497285-80497304 | None:intergenic | 30.0% | |
| TTGTTAGATTGCAACAAAGT+TGG | + | chr1.1:80498035-80498054 | MS.gene93123:CDS | 30.0% | |
| ! | AATCCATCCTCAAGTTTTTA+AGG | - | chr1.1:80498181-80498200 | None:intergenic | 30.0% |
| ! | ACTAATGACTACTAGTGTTT+TGG | + | chr1.1:80497141-80497160 | MS.gene93123:intron | 30.0% |
| ! | ATGCATAAACGAAGCATTAA+CGG | + | chr1.1:80496621-80496640 | MS.gene93123:CDS | 30.0% |
| ! | GTTTTCATTGAGATTATTGG+TGG | + | chr1.1:80497200-80497219 | MS.gene93123:intron | 30.0% |
| AAATGCAAACCGAGAGTTAT+GGG | - | chr1.1:80497396-80497415 | None:intergenic | 35.0% | |
| AATCTGGAGACTTTGATCAT+TGG | + | chr1.1:80498095-80498114 | MS.gene93123:CDS | 35.0% | |
| AGAAGAGAAACTTATTAGCC+AGG | + | chr1.1:80497109-80497128 | MS.gene93123:intron | 35.0% | |
| ATAGTCTCATCTAAGAAGTG+AGG | + | chr1.1:80497291-80497310 | MS.gene93123:intron | 35.0% | |
| ATCATGCCCACATATTACAA+AGG | + | chr1.1:80498439-80498458 | MS.gene93123:CDS | 35.0% | |
| ATCTCGCTGTTATTGCTAAT+GGG | + | chr1.1:80496875-80496894 | MS.gene93123:CDS | 35.0% | |
| CAACCTTAAAAACTTGAGGA+TGG | + | chr1.1:80498175-80498194 | MS.gene93123:CDS | 35.0% | |
| CTGTCGTAATTTAGAAGAGT+TGG | + | chr1.1:80497851-80497870 | MS.gene93123:CDS | 35.0% | |
| GAAAAAGACAAGGAAACGTT+TGG | + | chr1.1:80496682-80496701 | MS.gene93123:CDS | 35.0% | |
| GAAGAGAAACTTATTAGCCA+GGG | + | chr1.1:80497110-80497129 | MS.gene93123:intron | 35.0% | |
| GATGTTGGAATGAAAGCTAT+TGG | + | chr1.1:80497666-80497685 | MS.gene93123:CDS | 35.0% | |
| GGCTAAATTCTGTGATAATC+TGG | + | chr1.1:80498079-80498098 | MS.gene93123:CDS | 35.0% | |
| GTTAGATTGCAACAAAGTTG+GGG | + | chr1.1:80498037-80498056 | MS.gene93123:CDS | 35.0% | |
| TAATTGTCCAAAGATCACAG+TGG | + | chr1.1:80498361-80498380 | MS.gene93123:CDS | 35.0% | |
| TCATTGAGATTATTGGTGGA+TGG | + | chr1.1:80497204-80497223 | MS.gene93123:intron | 35.0% | |
| TCTTTCCTTATTACAGTCCT+TGG | + | chr1.1:80497695-80497714 | MS.gene93123:CDS | 35.0% | |
| TGTCTAAATACTTGATCCGT+TGG | - | chr1.1:80497935-80497954 | None:intergenic | 35.0% | |
| TTTACAGGAATTACGGATGT+TGG | + | chr1.1:80497651-80497670 | MS.gene93123:intron | 35.0% | |
| !! | AGTTGATAGCGAAAAAGACA+AGG | + | chr1.1:80496672-80496691 | MS.gene93123:CDS | 35.0% |
| !! | CTAATGGGTTTAGATGTTTG+AGG | + | chr1.1:80496890-80496909 | MS.gene93123:CDS | 35.0% |
| !! | GTCTTTTTCGCTATCAACTT+TGG | - | chr1.1:80496671-80496690 | None:intergenic | 35.0% |
| !! | TGCATCTTCTGAAGTTGAAT+TGG | - | chr1.1:80496590-80496609 | None:intergenic | 35.0% |
| AAGTCAATGCAGAAACCTTG+AGG | + | chr1.1:80498241-80498260 | MS.gene93123:CDS | 40.0% | |
| AATGCAAACCGAGAGTTATG+GGG | - | chr1.1:80497395-80497414 | None:intergenic | 40.0% | |
| ACCTCACATGCTTCGTAAAA+TGG | + | chr1.1:80496771-80496790 | MS.gene93123:CDS | 40.0% | |
| AGACAAGGAAACGTTTGGTT+TGG | + | chr1.1:80496687-80496706 | MS.gene93123:CDS | 40.0% | |
| AGATCAGAATCAGTAACACC+AGG | - | chr1.1:80496859-80496878 | None:intergenic | 40.0% | |
| ATACACCACTACTTGAGAGT+AGG | - | chr1.1:80497252-80497271 | None:intergenic | 40.0% | |
| ATACCAACCACTGTGATCTT+TGG | - | chr1.1:80498371-80498390 | None:intergenic | 40.0% | |
| ATCTCACATCCAAGTATTCC+AGG | - | chr1.1:80498421-80498440 | None:intergenic | 40.0% | |
| ATGCAGTTACCTGGAATACT+TGG | + | chr1.1:80498409-80498428 | MS.gene93123:CDS | 40.0% | |
| CACATCCAAGGACTGTAATA+AGG | - | chr1.1:80497703-80497722 | None:intergenic | 40.0% | |
| CAGAAACTTTATTGCGTCGT+CGG | - | chr1.1:80498138-80498157 | None:intergenic | 40.0% | |
| CCTTGCAAAAGTCAGGTAAA+TGG | - | chr1.1:80498487-80498506 | None:intergenic | 40.0% | |
| GAAATGCAAACCGAGAGTTA+TGG | - | chr1.1:80497397-80497416 | None:intergenic | 40.0% | |
| GATCTCGCTGTTATTGCTAA+TGG | + | chr1.1:80496874-80496893 | MS.gene93123:CDS | 40.0% | |
| GCACAAGTATCACTGACAAT+GGG | + | chr1.1:80497886-80497905 | MS.gene93123:CDS | 40.0% | |
| GGAATGAAAGCTATTGGTGA+CGG | + | chr1.1:80497672-80497691 | MS.gene93123:CDS | 40.0% | |
| GGATGAAGCCATATTATCGT+TGG | + | chr1.1:80498058-80498077 | MS.gene93123:CDS | 40.0% | |
| GTTGGTATAGGCATTCTTGT+GGG | + | chr1.1:80498383-80498402 | MS.gene93123:CDS | 40.0% | |
| TCACATGCTTCGTAAAATGG+CGG | + | chr1.1:80496774-80496793 | MS.gene93123:CDS | 40.0% | |
| TGCACAAGTATCACTGACAA+TGG | + | chr1.1:80497885-80497904 | MS.gene93123:CDS | 40.0% | |
| TGCAGAAAGTTGACCGATAA+GGG | + | chr1.1:80497729-80497748 | MS.gene93123:CDS | 40.0% | |
| TGCGGATATTGCATCTTACT+GGG | + | chr1.1:80497784-80497803 | MS.gene93123:CDS | 40.0% | |
| TGCTTCGTTTATGCATAACG+CGG | - | chr1.1:80496617-80496636 | None:intergenic | 40.0% | |
| TTGCGGATATTGCATCTTAC+TGG | + | chr1.1:80497783-80497802 | MS.gene93123:CDS | 40.0% | |
| ! | AACTCTCGGTTTGCATTTCT+AGG | + | chr1.1:80497398-80497417 | MS.gene93123:intron | 40.0% |
| ! | AAGATCACAGTGGTTGGTAT+AGG | + | chr1.1:80498371-80498390 | MS.gene93123:CDS | 40.0% |
| ! | ATTTTAAGCAATGAGGAGCC+TGG | + | chr1.1:80498311-80498330 | MS.gene93123:CDS | 40.0% |
| ! | CCATTTACCTGACTTTTGCA+AGG | + | chr1.1:80498484-80498503 | MS.gene93123:CDS | 40.0% |
| ! | TCGGTTTGCATTTCTAGGTA+CGG | + | chr1.1:80497403-80497422 | MS.gene93123:intron | 40.0% |
| ! | TGGGGTTTCGAGTATTTGTA+AGG | + | chr1.1:80497983-80498002 | MS.gene93123:CDS | 40.0% |
| !! | TACTGGGTGCAGATTTGTTA+CGG | + | chr1.1:80497800-80497819 | MS.gene93123:CDS | 40.0% |
| !! | TTAGAAGAGTTGGTATCGCA+AGG | + | chr1.1:80497861-80497880 | MS.gene93123:CDS | 40.0% |
| !! | TTTGGGATAGACTCTCCTTT+TGG | + | chr1.1:80497354-80497373 | MS.gene93123:intron | 40.0% |
| AACAGCGGACAATCCCTTAT+CGG | - | chr1.1:80497745-80497764 | None:intergenic | 45.0% | |
| AACGAGAAACAGACTGAGCA+AGG | - | chr1.1:80496828-80496847 | None:intergenic | 45.0% | |
| AAGTGAGGCTTATAAGCCAG+AGG | + | chr1.1:80497306-80497325 | MS.gene93123:intron | 45.0% | |
| AATGGAAACCAGCCTCATCA+AGG | - | chr1.1:80498469-80498488 | None:intergenic | 45.0% | |
| AGTGAGGCTTATAAGCCAGA+GGG | + | chr1.1:80497307-80497326 | MS.gene93123:intron | 45.0% | |
| ATCGGTCAACTTTCTGCAGT+AGG | - | chr1.1:80497727-80497746 | None:intergenic | 45.0% | |
| CAGTAATGTCACTGACGTTG+GGG | + | chr1.1:80497965-80497984 | MS.gene93123:CDS | 45.0% | |
| CGACGACGCAATAAAGTTTC+TGG | + | chr1.1:80498136-80498155 | MS.gene93123:CDS | 45.0% | |
| CTGCAGAAAGTTGACCGATA+AGG | + | chr1.1:80497728-80497747 | MS.gene93123:CDS | 45.0% | |
| CTGGAGACTTTGATCATTGG+TGG | + | chr1.1:80498098-80498117 | MS.gene93123:CDS | 45.0% | |
| GCAGTAATGTCACTGACGTT+GGG | + | chr1.1:80497964-80497983 | MS.gene93123:CDS | 45.0% | |
| GTCATTAGTGGGAAAATCCC+TGG | - | chr1.1:80497130-80497149 | None:intergenic | 45.0% | |
| GTGTGATTACTGATGAAGGC+TGG | + | chr1.1:80497523-80497542 | MS.gene93123:intron | 45.0% | |
| GTTTCTCGTTCGTTCTATCC+TGG | + | chr1.1:80496838-80496857 | MS.gene93123:CDS | 45.0% | |
| TGCACGAGCATAAGTCCAAA+AGG | - | chr1.1:80497372-80497391 | None:intergenic | 45.0% | |
| TGCAGTAATGTCACTGACGT+TGG | + | chr1.1:80497963-80497982 | MS.gene93123:CDS | 45.0% | |
| TGCGGAAAGCTTCTTCCTTT+CGG | - | chr1.1:80496743-80496762 | None:intergenic | 45.0% | |
| TGTCCAAAGATCACAGTGGT+TGG | + | chr1.1:80498365-80498384 | MS.gene93123:CDS | 45.0% | |
| TGTGGGTAAATGCAGTTACC+TGG | + | chr1.1:80498400-80498419 | MS.gene93123:CDS | 45.0% | |
| TTTACGAAGCATGTGAGGTC+CGG | - | chr1.1:80496770-80496789 | None:intergenic | 45.0% | |
| ! | ATTACTGATGAAGGCTGGTC+TGG | + | chr1.1:80497528-80497547 | MS.gene93123:intron | 45.0% |
| ! | CTTTGATCATTGGTGGTTGC+CGG | + | chr1.1:80498105-80498124 | MS.gene93123:CDS | 45.0% |
| ! | GATTATTGGTGGATGGTGAG+TGG | + | chr1.1:80497211-80497230 | MS.gene93123:intron | 45.0% |
| ! | GGTTGGTATAGGCATTCTTG+TGG | + | chr1.1:80498382-80498401 | MS.gene93123:CDS | 45.0% |
| ! | TTTGATCATTGGTGGTTGCC+GGG | + | chr1.1:80498106-80498125 | MS.gene93123:CDS | 45.0% |
| !! | AGGCTGGCCTTTGTAATATG+TGG | - | chr1.1:80498449-80498468 | None:intergenic | 45.0% |
| !! | GCCATTTTACGAAGCATGTG+AGG | - | chr1.1:80496775-80496794 | None:intergenic | 45.0% |
| !! | GGCTGGCCTTTGTAATATGT+GGG | - | chr1.1:80498448-80498467 | None:intergenic | 45.0% |
| !! | TGCTTCGTAAAATGGCGGAT+AGG | + | chr1.1:80496779-80496798 | MS.gene93123:CDS | 45.0% |
| !! | TTGGTTTGGTTTGCAAGCGA+TGG | + | chr1.1:80496701-80496720 | MS.gene93123:CDS | 45.0% |
| ACAACAGCCTTTGGCAACAG+CGG | - | chr1.1:80497760-80497779 | None:intergenic | 50.0% | |
| CATTAGGTAGGAGAACCCTC+TGG | - | chr1.1:80497325-80497344 | None:intergenic | 50.0% | |
| CCAAAGGCTGTTGTGACTTG+CGG | + | chr1.1:80497766-80497785 | MS.gene93123:CDS | 50.0% | |
| GGACTCCTACTCTCAAGTAG+TGG | + | chr1.1:80497244-80497263 | MS.gene93123:intron | 50.0% | |
| TACAAAGGCCAGCCTTGATG+AGG | + | chr1.1:80498454-80498473 | MS.gene93123:CDS | 50.0% | |
| TCTGCAGTAGGACACATCCA+AGG | - | chr1.1:80497715-80497734 | None:intergenic | 50.0% | |
| ! | GCATTTCTAGGTACGGAGAG+AGG | + | chr1.1:80497410-80497429 | MS.gene93123:intron | 50.0% |
| ! | GGACATTGGTTGCTGTGAAG+AGG | + | chr1.1:80498268-80498287 | MS.gene93123:CDS | 50.0% |
| ! | TGGTTTGCAAGCGATGGCTT+CGG | + | chr1.1:80496707-80496726 | MS.gene93123:CDS | 50.0% |
| !! | ATGGTGAGTGGAAGTTGGTG+AGG | + | chr1.1:80497223-80497242 | MS.gene93123:intron | 50.0% |
| !! | TTCGGTTACAGAGCACCGAA+AGG | + | chr1.1:80496725-80496744 | MS.gene93123:CDS | 50.0% |
| AACCAATGTCCAGCGCCTCA+AGG | - | chr1.1:80498259-80498278 | None:intergenic | 55.0% | |
| AAGAAGCTTTCCGCACGTGC+CGG | + | chr1.1:80496748-80496767 | MS.gene93123:CDS | 55.0% | |
| ATGCAGAAACCTTGAGGCGC+TGG | + | chr1.1:80498247-80498266 | MS.gene93123:CDS | 55.0% | |
| CCGCAAGTCACAACAGCCTT+TGG | - | chr1.1:80497769-80497788 | None:intergenic | 55.0% | |
| CGACGAGCTTCGTTCGATTC+TGG | + | chr1.1:80496645-80496664 | MS.gene93123:CDS | 55.0% | |
| CTCGTGCACCCCATAACTCT+CGG | + | chr1.1:80497384-80497403 | MS.gene93123:intron | 55.0% | |
| GAAACCAGCCTCATCAAGGC+TGG | - | chr1.1:80498465-80498484 | None:intergenic | 55.0% | |
| GCCTTGCAAGTGGTTGCCAA+CGG | + | chr1.1:80497916-80497935 | MS.gene93123:CDS | 55.0% | |
| GGATTGTCCGCTGTTGCCAA+AGG | + | chr1.1:80497750-80497769 | MS.gene93123:CDS | 55.0% | |
| GGCGGATAGGTTCACATGCT+TGG | + | chr1.1:80496792-80496811 | MS.gene93123:CDS | 55.0% | |
| GGGCTGATAAGCCTTGCAAG+TGG | + | chr1.1:80497906-80497925 | MS.gene93123:CDS | 55.0% | |
| GGTGGATGGTGAGTGGAAGT+TGG | + | chr1.1:80497218-80497237 | MS.gene93123:intron | 55.0% | |
| TCCGTTGGCAACCACTTGCA+AGG | - | chr1.1:80497920-80497939 | None:intergenic | 55.0% | |
| !! | AACCTTGAGGCGCTGGACAT+TGG | + | chr1.1:80498254-80498273 | MS.gene93123:CDS | 55.0% |
| AAGGCCAGCCTTGATGAGGC+TGG | + | chr1.1:80498458-80498477 | MS.gene93123:CDS | 60.0% | |
| TTGCGTCGTCGGAGACATCC+CGG | - | chr1.1:80498127-80498146 | None:intergenic | 60.0% | |
| CATGTGAGGTCCGGCACGTG+CGG | - | chr1.1:80496761-80496780 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 80496580 | 80498550 | 80496580 | ID=MS.gene93123 |
| chr1.1 | mRNA | 80496580 | 80498550 | 80496580 | ID=MS.gene93123.t1;Parent=MS.gene93123 |
| chr1.1 | exon | 80496580 | 80496937 | 80496580 | ID=MS.gene93123.t1.exon1;Parent=MS.gene93123.t1 |
| chr1.1 | CDS | 80496580 | 80496937 | 80496580 | ID=cds.MS.gene93123.t1;Parent=MS.gene93123.t1 |
| chr1.1 | exon | 80497658 | 80498550 | 80497658 | ID=MS.gene93123.t1.exon2;Parent=MS.gene93123.t1 |
| chr1.1 | CDS | 80497658 | 80498550 | 80497658 | ID=cds.MS.gene93123.t1;Parent=MS.gene93123.t1 |
| Gene Sequence |
| Protein sequence |
