AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene046998

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046998.t1 MTR_8g107270 93.709 302 19 0 11 312 16 317 0.0 593
MS.gene046998.t1 MTR_4g078545 59.233 287 117 0 12 298 74 360 2.69e-124 360
MS.gene046998.t1 MTR_3g028590 58.020 293 123 0 4 296 84 376 2.30e-123 359
MS.gene046998.t1 MTR_3g028590 58.020 293 123 0 4 296 88 380 2.95e-123 358
MS.gene046998.t1 MTR_8g036880 58.446 296 122 1 4 298 93 388 9.71e-120 350
MS.gene046998.t1 MTR_2g098070 58.528 299 120 1 2 296 51 349 1.95e-117 343
MS.gene046998.t1 MTR_3g104500 36.054 294 181 5 8 297 29 319 2.85e-60 195
MS.gene046998.t1 MTR_8g027975 29.392 296 174 9 8 278 46 331 2.83e-31 120
MS.gene046998.t1 MTR_3g104600 31.935 310 162 13 2 280 18 309 1.62e-30 118
MS.gene046998.t1 MTR_5g009500 29.043 303 164 10 8 278 33 316 1.82e-30 118
MS.gene046998.t1 MTR_5g009500 25.616 203 134 4 16 207 144 340 1.70e-11 64.7
MS.gene046998.t1 MTR_6g091800 27.129 317 191 11 9 303 15 313 9.13e-28 110
MS.gene046998.t1 MTR_4g016730 28.214 280 171 8 24 298 100 354 4.66e-27 109
MS.gene046998.t1 MTR_8g096050 27.562 283 185 6 10 288 224 490 1.02e-26 110
MS.gene046998.t1 MTR_7g064980 28.065 310 192 10 12 304 24 319 2.32e-26 106
MS.gene046998.t1 MTR_7g068340 27.798 277 179 8 24 298 98 355 4.60e-26 106
MS.gene046998.t1 MTR_6g091800 28.854 253 147 7 9 246 15 249 6.31e-25 101
MS.gene046998.t1 MTR_6g091800 26.686 341 186 12 9 303 15 337 6.72e-25 102
MS.gene046998.t1 MTR_6g091800 26.909 275 166 9 9 266 15 271 1.28e-24 100
MS.gene046998.t1 MTR_6g091800 27.244 312 167 10 9 278 15 308 2.76e-24 100
MS.gene046998.t1 MTR_3g107510 28.214 280 171 10 16 288 125 381 3.90e-24 101
MS.gene046998.t1 MTR_3g107510 27.670 206 120 6 8 206 211 394 2.28e-15 76.6
MS.gene046998.t1 MTR_1g012030 27.027 296 185 10 11 298 137 409 6.21e-24 101
MS.gene046998.t1 MTR_1g012030 28.079 203 123 6 8 206 228 411 1.24e-15 77.4
MS.gene046998.t1 MTR_3g098460 26.148 283 189 6 10 288 202 468 7.46e-24 101
MS.gene046998.t1 MTR_7g084400 27.046 281 180 7 13 288 213 473 1.95e-23 100
MS.gene046998.t1 MTR_7g084400 24.737 190 127 4 13 202 309 482 2.17e-11 64.7
MS.gene046998.t1 MTR_6g091800 28.102 274 146 7 9 246 15 273 7.00e-22 93.6
MS.gene046998.t1 MTR_8g090210 28.387 310 164 10 8 288 105 385 1.58e-21 94.4
MS.gene046998.t1 MTR_6g091800 26.087 299 162 9 9 266 15 295 1.76e-21 92.8
MS.gene046998.t1 MTR_3g074490 27.393 303 172 9 10 288 113 391 8.84e-21 92.0
MS.gene046998.t1 MTR_2g436930 23.148 324 211 8 2 293 1 318 2.95e-20 89.7
MS.gene046998.t1 MTR_4g114320 25.170 294 193 10 11 298 121 393 5.55e-20 89.7
MS.gene046998.t1 MTR_5g081150 25.614 285 196 6 12 288 33 309 9.55e-19 85.5
MS.gene046998.t1 MTR_6g091800 30.220 182 103 6 9 179 15 183 4.09e-18 81.3
MS.gene046998.t1 MTR_4g119770 22.393 326 213 7 5 296 3 322 6.11e-18 83.2
MS.gene046998.t1 MTR_6g092210 25.000 260 176 7 56 303 1 253 8.25e-17 79.0
MS.gene046998.t1 MTR_6g034145 24.535 269 172 8 56 303 1 259 1.94e-16 78.2
MS.gene046998.t1 MTR_7g084400 29.688 192 117 5 13 202 207 382 1.20e-15 77.4
MS.gene046998.t1 MTR_7g109135 23.469 294 209 10 16 302 25 309 1.24e-15 76.6
MS.gene046998.t1 MTR_4g119770 23.462 260 170 5 5 241 3 256 2.64e-15 74.7
MS.gene046998.t1 MTR_6g091800 29.126 206 98 7 9 179 15 207 6.84e-15 72.8
MS.gene046998.t1 MTR_4g005330 21.333 300 192 5 11 288 64 341 2.47e-13 70.1
MS.gene046998.t1 MTR_6g091910 25.373 201 133 4 9 202 15 205 5.16e-13 67.4
MS.gene046998.t1 MTR_5g081150 26.667 195 131 3 12 202 33 219 6.89e-13 67.8
MS.gene046998.t1 MTR_4g057850 23.051 295 196 11 14 295 23 299 6.91e-13 68.6
MS.gene046998.t1 MTR_5g081150 26.667 195 131 3 12 202 33 219 7.70e-13 67.4
MS.gene046998.t1 MTR_7g109135 22.973 296 201 10 16 302 25 302 2.87e-12 66.6
MS.gene046998.t1 MTR_4g005330 21.356 295 188 5 16 288 3 275 3.45e-12 66.2
MS.gene046998.t1 MTR_5g032420 21.843 293 197 6 11 274 4 293 1.56e-11 64.7
MS.gene046998.t1 MTR_5g030530 24.211 285 187 8 10 279 5 275 2.55e-11 63.5
MS.gene046998.t1 MTR_1g097890 22.295 305 188 9 14 310 52 315 3.90e-11 63.2
MS.gene046998.t1 MTR_7g066690 20.803 274 206 6 8 278 12 277 6.84e-11 62.4
MS.gene046998.t1 MTR_3g462140 21.575 292 183 6 8 278 10 276 8.20e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046998.t1 AT5G17400 75.503 298 73 0 5 302 6 303 2.73e-164 459
MS.gene046998.t1 AT4G28390 60.345 290 115 0 9 298 79 368 3.52e-124 360
MS.gene046998.t1 AT4G28390 60.345 290 115 0 9 298 79 368 3.52e-124 360
MS.gene046998.t1 AT5G13490 58.219 292 121 1 8 298 83 374 4.06e-119 348
MS.gene046998.t1 AT5G13490 58.219 292 121 1 8 298 83 374 4.06e-119 348
MS.gene046998.t1 AT3G08580 57.192 292 124 1 8 298 79 370 1.19e-116 342
MS.gene046998.t1 AT3G08580 57.192 292 124 1 8 298 79 370 1.19e-116 342
MS.gene046998.t1 AT5G56450 37.667 300 170 8 9 297 30 323 1.33e-58 191
MS.gene046998.t1 AT2G37890 29.966 297 191 7 11 298 43 331 3.20e-33 125
MS.gene046998.t1 AT4G26180 31.469 286 169 9 9 280 17 289 3.56e-33 124
MS.gene046998.t1 AT4G26180 31.469 286 169 9 9 280 17 289 8.04e-33 124
MS.gene046998.t1 AT4G01100 29.412 306 163 8 7 278 36 322 7.80e-31 119
MS.gene046998.t1 AT1G14560 33.213 277 147 12 24 278 38 298 2.74e-29 114
MS.gene046998.t1 AT1G14560 32.609 276 150 11 24 278 38 298 4.57e-29 114
MS.gene046998.t1 AT5G01500 28.881 277 176 9 24 298 130 387 6.34e-29 115
MS.gene046998.t1 AT3G51870 27.536 276 181 7 24 298 102 359 8.60e-29 114
MS.gene046998.t1 AT4G01100 30.063 316 162 10 7 278 36 336 1.57e-28 113
MS.gene046998.t1 AT4G01100 29.210 291 153 8 22 278 1 272 3.98e-28 110
MS.gene046998.t1 AT3G55640 28.094 299 188 10 3 288 29 313 4.47e-28 111
MS.gene046998.t1 AT3G55640 28.094 299 188 10 3 288 29 313 4.47e-28 111
MS.gene046998.t1 AT3G53940 27.687 307 197 8 11 304 71 365 8.34e-28 111
MS.gene046998.t1 AT3G53940 25.366 205 135 4 8 209 175 364 5.69e-11 63.2
MS.gene046998.t1 AT3G21390 25.714 315 193 7 12 293 18 324 6.03e-24 100
MS.gene046998.t1 AT3G21390 25.714 315 193 7 12 293 40 346 9.89e-24 100
MS.gene046998.t1 AT5G61810 28.571 273 167 7 10 278 62 310 1.25e-23 99.4
MS.gene046998.t1 AT5G61810 27.915 283 176 7 10 288 205 463 2.54e-23 100
MS.gene046998.t1 AT3G55640 30.144 209 123 7 3 202 29 223 5.33e-23 96.3
MS.gene046998.t1 AT3G55640 30.144 209 123 7 3 202 29 223 5.33e-23 96.3
MS.gene046998.t1 AT5G51050 26.071 280 184 5 13 288 223 483 7.24e-23 99.0
MS.gene046998.t1 AT5G07320 26.740 273 168 8 22 288 218 464 8.03e-23 98.6
MS.gene046998.t1 AT5G64970 28.146 302 171 10 10 288 132 410 9.58e-21 92.4
MS.gene046998.t1 AT5G64970 28.571 294 164 10 10 280 132 402 2.18e-20 91.3
MS.gene046998.t1 AT5G48970 24.854 342 202 12 2 299 8 338 4.90e-20 89.4
MS.gene046998.t1 AT4G32400 26.298 289 175 11 11 288 112 373 3.32e-19 87.8
MS.gene046998.t1 AT3G53940 28.500 200 123 4 11 202 71 258 3.33e-19 86.3
MS.gene046998.t1 AT3G20240 22.330 309 180 7 10 288 49 327 3.53e-19 87.0
MS.gene046998.t1 AT5G64970 28.053 303 171 11 10 288 7 286 3.66e-19 86.3
MS.gene046998.t1 AT1G78180 28.620 297 164 11 16 288 131 403 2.42e-16 79.3
MS.gene046998.t1 AT1G14560 31.868 182 103 6 117 280 24 202 9.48e-16 75.5
MS.gene046998.t1 AT3G54110 24.643 280 188 9 8 278 10 275 9.58e-15 73.9
MS.gene046998.t1 AT5G48970 24.908 273 160 9 61 299 6 267 3.33e-14 72.0
MS.gene046998.t1 AT5G58970 22.517 302 224 7 8 306 11 305 1.43e-13 70.5
MS.gene046998.t1 AT5G66380 27.368 190 132 4 113 298 5 192 9.27e-13 68.2
MS.gene046998.t1 AT5G01340 26.738 187 124 3 17 199 116 293 5.68e-12 65.9
MS.gene046998.t1 AT1G79900 26.106 226 141 6 58 275 51 258 1.39e-11 64.7
MS.gene046998.t1 AT1G34065 22.295 305 185 9 11 304 73 336 9.21e-11 62.4

Find 76 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGGGAGCTGGGGTGCTTGC+TGG 0.170497 4.3:+300803 MS.gene046998:CDS
TTGCATTATAATACTTATTC+TGG 0.231839 4.3:-300697 None:intergenic
GGGATTCGGTGTTTCAATAT+TGG 0.231853 4.3:+300091 MS.gene046998:CDS
AAGAGGGTCTCCTTGCCTTT+TGG 0.234640 4.3:+299305 MS.gene046998:CDS
GGTTACTTCAAAAGCATCTT+TGG 0.242168 4.3:+299840 MS.gene046998:CDS
CTTCTAGGGATGGCGGGAGC+TGG 0.249873 4.3:+300791 MS.gene046998:CDS
AATTGGTGCCACTGCAGTTT+TGG 0.258307 4.3:-299176 None:intergenic
ACTGGTCAGCGTCAGTTTAA+AGG 0.284312 4.3:+300011 MS.gene046998:CDS
TTCTTTGCTAGTTTCTTGTT+AGG 0.299649 4.3:+300593 MS.gene046998:CDS
TTCTAGGGATGGCGGGAGCT+GGG 0.318989 4.3:+300792 MS.gene046998:CDS
GGATTCGGTGTTTCAATATT+GGG 0.326349 4.3:+300092 MS.gene046998:CDS
GTCACTGCAAACATGCTTCT+AGG 0.326966 4.3:+300776 MS.gene046998:CDS
TTGCTAGTTTCTTGTTAGGT+TGG 0.348330 4.3:+300597 MS.gene046998:CDS
AACTAAAACAATAGGCTTCA+TGG 0.352724 4.3:-300156 None:intergenic
GGGTACATCAAGTGGTTTGC+TGG 0.371317 4.3:+299882 MS.gene046998:CDS
AAAAGCTTCACTCTTTCAAT+TGG 0.371863 4.3:-299193 None:intergenic
TCATTTATTTCATGACTCTC+TGG 0.377926 4.3:-300880 None:intergenic
TGGAGCATCACAACTGTATC+TGG 0.393342 4.3:+300617 MS.gene046998:CDS
CGGGAGCTGGGGTGCTTGCT+GGG 0.401594 4.3:+300804 MS.gene046998:CDS
AAAGGTCCAACTAAAACAAT+AGG 0.409592 4.3:-300164 None:intergenic
GGACTTTGCACGTACAAGAT+TGG 0.415555 4.3:+299962 MS.gene046998:CDS
TTTGCTGGGAATGTGGCTTC+AGG 0.417717 4.3:+299897 MS.gene046998:CDS
ATGGTGTTGCTGGCTTGTAC+AGG 0.427812 4.3:+300069 MS.gene046998:CDS
ATATCAAGTGATGGTGTTGC+TGG 0.431324 4.3:+300059 MS.gene046998:CDS
TGTATCGAGGAATGTACTTT+GGG 0.438762 4.3:+300123 MS.gene046998:CDS
GATGTACCCATCTTTCTCTC+TGG 0.444325 4.3:-299868 None:intergenic
GTATAAATGCTTACCTCAAA+AGG 0.445098 4.3:-300182 None:intergenic
GCTGGCTTGTACAGGGGATT+CGG 0.454958 4.3:+300077 MS.gene046998:CDS
CATGCATTCCGTGAGATTGT+TGG 0.459314 4.3:+300722 MS.gene046998:CDS
GTGGCTTCAGGCAGTGCTGC+GGG 0.459875 4.3:+299909 MS.gene046998:CDS
GCTGACCAGTGGCATGGCAC+TGG 0.477809 4.3:-299998 None:intergenic
CGTGAGATTGTTGGACAAGA+GGG 0.488183 4.3:+300731 MS.gene046998:CDS
ATGTATCGAGGAATGTACTT+TGG 0.489826 4.3:+300122 MS.gene046998:CDS
TAAAAGAGTCTTTGCTGAAG+AGG 0.493467 4.3:+299288 MS.gene046998:CDS
ATAATACTTATTCTGGTGCC+CGG 0.509415 4.3:-300690 None:intergenic
TACTGTGTCTAGATGAGATA+CGG 0.509802 4.3:-300841 None:intergenic
AAAAGAGTCTTTGCTGAAGA+GGG 0.517416 4.3:+299289 MS.gene046998:CDS
TCTAGGGATGGCGGGAGCTG+GGG 0.518411 4.3:+300793 MS.gene046998:CDS
CGACGGCGTAATGTGTCAAA+AGG 0.519765 4.3:-300653 None:intergenic
GGATATTCCAGAGAGAAAGA+TGG 0.522046 4.3:+299861 MS.gene046998:CDS
GGTGTTGCTGGCTTGTACAG+GGG 0.525521 4.3:+300071 MS.gene046998:CDS
AATATCTAATAACATTGGCC+TGG 0.525661 4.3:-299336 None:intergenic
TGGTGTTGCTGGCTTGTACA+GGG 0.527675 4.3:+300070 MS.gene046998:CDS
GGTTTCTTAGCTCTATTTCG+AGG 0.528923 4.3:+300752 MS.gene046998:CDS
CAAAGCGAAATGATTAAAAG+AGG 0.529225 4.3:+299226 MS.gene046998:CDS
CGTCGTATGATGCTAACCTC+CGG 0.530080 4.3:+300671 MS.gene046998:CDS
TCACTGCAAACATGCTTCTA+GGG 0.533524 4.3:+300777 MS.gene046998:CDS
GGCCTGGTGACCTCTCCAAA+AGG 0.537477 4.3:-299320 None:intergenic
TCAGTCCAGTGCCATGCCAC+TGG 0.539129 4.3:+299993 MS.gene046998:CDS
GATATTCCAGAGAGAAAGAT+GGG 0.540943 4.3:+299862 MS.gene046998:CDS
CCGTGAGATTGTTGGACAAG+AGG 0.542206 4.3:+300730 MS.gene046998:CDS
GTCGTATGATGCTAACCTCC+GGG 0.550555 4.3:+300672 MS.gene046998:CDS
AACATGCTTCTAGGGATGGC+GGG 0.552983 4.3:+300785 MS.gene046998:CDS
AAAGTACATTCCTCGATACA+TGG 0.553101 4.3:-300120 None:intergenic
TGTGGCTTCAGGCAGTGCTG+CGG 0.558659 4.3:+299908 MS.gene046998:CDS
TAAAGGTATTAGACAAACCA+AGG 0.560990 4.3:-299267 None:intergenic
GGTACATCAAGTGGTTTGCT+GGG 0.566321 4.3:+299883 MS.gene046998:CDS
CAAATGATACAAAAGTATTG+AGG 0.568033 4.3:-299940 None:intergenic
TGCAAACATGCTTCTAGGGA+TGG 0.571454 4.3:+300781 MS.gene046998:CDS
CGTAAAACAATATCAAGTGA+TGG 0.574072 4.3:+300050 MS.gene046998:CDS
AAGAATCACCTCACCTGTGT+GGG 0.577980 4.3:-299361 None:intergenic
GGGAAAATATCTAATAACAT+TGG 0.589711 4.3:-299341 None:intergenic
GTATTAGACAAACCAAGGTA+TGG 0.595810 4.3:-299262 None:intergenic
CAAGTGGTTTGCTGGGAATG+TGG 0.602125 4.3:+299890 MS.gene046998:CDS
AGAAAGATGGGTACATCAAG+TGG 0.605042 4.3:+299874 MS.gene046998:CDS
CCTCTTGTCCAACAATCTCA+CGG 0.613033 4.3:-300730 None:intergenic
GGTGACCTCTCCAAAAGGCA+AGG 0.614061 4.3:-299315 None:intergenic
AAACATGCTTCTAGGGATGG+CGG 0.631697 4.3:+300784 MS.gene046998:CDS
ACTGACGCTGACCAGTGGCA+TGG 0.638244 4.3:-300004 None:intergenic
AAAGAATCACCTCACCTGTG+TGG 0.643453 4.3:-299362 None:intergenic
TTTAAACTGACGCTGACCAG+TGG 0.653683 4.3:-300009 None:intergenic
TTGGGAATCACCATGTATCG+AGG 0.659477 4.3:+300110 MS.gene046998:CDS
AATCATATCCAAAACTGCAG+TGG 0.672395 4.3:+299168 MS.gene046998:CDS
ATGGCACTGGACTGAATCAG+TGG 0.678456 4.3:-299985 None:intergenic
ATACTTATTCTGGTGCCCGG+AGG 0.698949 4.3:-300687 None:intergenic
CGGAGGTTAGCATCATACGA+CGG 0.749578 4.3:-300670 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATAAAAACTCTAATAT+TGG - chr4.3:300324-300343 None:intergenic 10.0%
!! AAGATGTATGTTAAAATTAA+AGG - chr4.3:300376-300395 None:intergenic 15.0%
!! TATGTTAAAATTAAAGGTAA+GGG - chr4.3:300370-300389 None:intergenic 15.0%
!! ATTTCAATTAAAACATACAG+AGG + chr4.3:299590-299609 MS.gene046998:intron 20.0%
!! CATTACAAAACAAGTATAAT+AGG - chr4.3:299446-299465 None:intergenic 20.0%
!! GTATGTTAAAATTAAAGGTA+AGG - chr4.3:300371-300390 None:intergenic 20.0%
!! TGAAATTGAGAATTATTTGA+GGG - chr4.3:299576-299595 None:intergenic 20.0%
!! TTGAAATTGAGAATTATTTG+AGG - chr4.3:299577-299596 None:intergenic 20.0%
!! TTGCATTATAATACTTATTC+TGG - chr4.3:300700-300719 None:intergenic 20.0%
!! TTTGATTGGAATACAAAATA+CGG - chr4.3:299728-299747 None:intergenic 20.0%
!!! ATTTTCAAAGGATTTTGTAA+TGG + chr4.3:299132-299151 MS.gene046998:CDS 20.0%
!!! TACTTGTTTTGTAATGTTTT+TGG + chr4.3:299450-299469 MS.gene046998:intron 20.0%
!!! TTTTCAAAGGATTTTGTAAT+GGG + chr4.3:299133-299152 MS.gene046998:CDS 20.0%
! AACATAGATCTATAATTCAC+AGG + chr4.3:300222-300241 MS.gene046998:intron 25.0%
! GGGAAAATATCTAATAACAT+TGG - chr4.3:299344-299363 None:intergenic 25.0%
! TATTTGAGCAAACAGTTAAT+TGG + chr4.3:299789-299808 MS.gene046998:intron 25.0%
! TTAGTGAACTAATTACAACA+CGG - chr4.3:299505-299524 None:intergenic 25.0%
! TTGATTGGAATACAAAATAC+GGG - chr4.3:299727-299746 None:intergenic 25.0%
!! AGAATCAGAATCATTTTCAA+AGG + chr4.3:299120-299139 MS.gene046998:CDS 25.0%
!! CTCAATACTTTTGTATCATT+TGG + chr4.3:299941-299960 MS.gene046998:CDS 25.0%
!! TATTATGCTGCTTATATTGA+TGG + chr4.3:300339-300358 MS.gene046998:intron 25.0%
!!! CAAATGATACAAAAGTATTG+AGG - chr4.3:299943-299962 None:intergenic 25.0%
!!! CTTTTGATTTATATTCTGCA+GGG + chr4.3:300566-300585 MS.gene046998:intron 25.0%
!!! TCTTTTGATTTATATTCTGC+AGG + chr4.3:300565-300584 MS.gene046998:intron 25.0%
!!! TTTTGATTTATATTCTGCAG+GGG + chr4.3:300567-300586 MS.gene046998:intron 25.0%
AAAAGCTTCACTCTTTCAAT+TGG - chr4.3:299196-299215 None:intergenic 30.0%
AAAGGTCCAACTAAAACAAT+AGG - chr4.3:300167-300186 None:intergenic 30.0%
AACTAAAACAATAGGCTTCA+TGG - chr4.3:300159-300178 None:intergenic 30.0%
AACTAAACTAATGTCCATAG+AGG - chr4.3:299550-299569 None:intergenic 30.0%
AAGACTCATATTCCAATGAA+AGG - chr4.3:300549-300568 None:intergenic 30.0%
AATATCTAATAACATTGGCC+TGG - chr4.3:299339-299358 None:intergenic 30.0%
AGACTCATATTCCAATGAAA+GGG - chr4.3:300548-300567 None:intergenic 30.0%
ATCAAAATGCTATACCAACA+AGG - chr4.3:300489-300508 None:intergenic 30.0%
ATCTATAATTCACAGGCAAT+GGG + chr4.3:300229-300248 MS.gene046998:intron 30.0%
ATGAATTTATGTCAGAGCAT+TGG + chr4.3:300507-300526 MS.gene046998:intron 30.0%
ATGAGAATTTGATATACGTG+AGG - chr4.3:299619-299638 None:intergenic 30.0%
ATTAGTTCACTAAAAAGTCC+AGG + chr4.3:299512-299531 MS.gene046998:intron 30.0%
CAAAGCGAAATGATTAAAAG+AGG + chr4.3:299226-299245 MS.gene046998:CDS 30.0%
CAAGTTAGACAACAGTAATT+TGG + chr4.3:300414-300433 MS.gene046998:intron 30.0%
CGTAAAACAATATCAAGTGA+TGG + chr4.3:300050-300069 MS.gene046998:CDS 30.0%
GTATAAATGCTTACCTCAAA+AGG - chr4.3:300185-300204 None:intergenic 30.0%
GTTTATTTATGCCCTTTCAT+TGG + chr4.3:300534-300553 MS.gene046998:intron 30.0%
TAGTGAACTAATTACAACAC+GGG - chr4.3:299504-299523 None:intergenic 30.0%
TCAAAATGCTATACCAACAA+GGG - chr4.3:300488-300507 None:intergenic 30.0%
! CAAACAGTTAATTGGTCTAT+AGG + chr4.3:299797-299816 MS.gene046998:intron 30.0%
! CTCTTTTAATCATTTCGCTT+TGG - chr4.3:299228-299247 None:intergenic 30.0%
! GCTTTCAATTTTGCATTCAA+AGG + chr4.3:299819-299838 MS.gene046998:CDS 30.0%
! TATTAGATATTTTCCCACAC+AGG + chr4.3:299348-299367 MS.gene046998:CDS 30.0%
! TTCAGCAAAGACTCTTTTAA+AGG - chr4.3:299287-299306 None:intergenic 30.0%
! TTCTTTGCTAGTTTCTTGTT+AGG + chr4.3:300593-300612 MS.gene046998:CDS 30.0%
!! TAAAGGTATTAGACAAACCA+AGG - chr4.3:299270-299289 None:intergenic 30.0%
!!! ATGAAGCCTATTGTTTTAGT+TGG + chr4.3:300158-300177 MS.gene046998:CDS 30.0%
AAAAGAGTCTTTGCTGAAGA+GGG + chr4.3:299289-299308 MS.gene046998:CDS 35.0%
AAAGTACATTCCTCGATACA+TGG - chr4.3:300123-300142 None:intergenic 35.0%
AACCTAAAAACACCATACCT+TGG + chr4.3:299250-299269 MS.gene046998:CDS 35.0%
AATCATATCCAAAACTGCAG+TGG + chr4.3:299168-299187 MS.gene046998:CDS 35.0%
ATAATACTTATTCTGGTGCC+CGG - chr4.3:300693-300712 None:intergenic 35.0%
ATGTATCGAGGAATGTACTT+TGG + chr4.3:300122-300141 MS.gene046998:CDS 35.0%
GATATTCCAGAGAGAAAGAT+GGG + chr4.3:299862-299881 MS.gene046998:CDS 35.0%
GATCTATAATTCACAGGCAA+TGG + chr4.3:300228-300247 MS.gene046998:intron 35.0%
GGGTTAATAATTGCTTCTCT+TGG + chr4.3:300260-300279 MS.gene046998:intron 35.0%
GTATTAGACAAACCAAGGTA+TGG - chr4.3:299265-299284 None:intergenic 35.0%
TAAAAGAGTCTTTGCTGAAG+AGG + chr4.3:299288-299307 MS.gene046998:CDS 35.0%
TACTGTGTCTAGATGAGATA+CGG - chr4.3:300844-300863 None:intergenic 35.0%
TATTTACCTCATCTTTGAGC+TGG + chr4.3:299404-299423 MS.gene046998:intron 35.0%
TGTATCGAGGAATGTACTTT+GGG + chr4.3:300123-300142 MS.gene046998:CDS 35.0%
! AAAGACTGTTATTTGAGTGC+AGG - chr4.3:299752-299771 None:intergenic 35.0%
! AACCAAGGTATGGTGTTTTT+AGG - chr4.3:299255-299274 None:intergenic 35.0%
! AAGACTGTTATTTGAGTGCA+GGG - chr4.3:299751-299770 None:intergenic 35.0%
! ATGCTGGTCATACATTTTCA+AGG - chr4.3:299668-299687 None:intergenic 35.0%
! TGCTGGTCATACATTTTCAA+GGG - chr4.3:299667-299686 None:intergenic 35.0%
! TTGCTAGTTTCTTGTTAGGT+TGG + chr4.3:300597-300616 MS.gene046998:CDS 35.0%
! TTTTTCGTCTGTTCCATGTT+AGG + chr4.3:300290-300309 MS.gene046998:intron 35.0%
!! GGATTCGGTGTTTCAATATT+GGG + chr4.3:300092-300111 MS.gene046998:CDS 35.0%
!! GGTTACTTCAAAAGCATCTT+TGG + chr4.3:299840-299859 MS.gene046998:CDS 35.0%
!! TCAAAGGATTTTGTAATGGG+AGG + chr4.3:299136-299155 MS.gene046998:CDS 35.0%
!! TTTTCAAGGGGTAAAAACGA+TGG - chr4.3:299654-299673 None:intergenic 35.0%
!!! TGTTTTAGTTGGACCTTTTG+AGG + chr4.3:300169-300188 MS.gene046998:CDS 35.0%
ACAGGCAATGGGAAAATATG+GGG + chr4.3:300240-300259 MS.gene046998:intron 40.0%
AGAAAGATGGGTACATCAAG+TGG + chr4.3:299874-299893 MS.gene046998:CDS 40.0%
ATACCAACAAGGGATGTATC+TGG - chr4.3:300478-300497 None:intergenic 40.0%
ATTGGCATGCATACCTAACA+TGG - chr4.3:300306-300325 None:intergenic 40.0%
ATTTGAGTGCAGGGTTTGAT+TGG - chr4.3:299742-299761 None:intergenic 40.0%
CACAGGCAATGGGAAAATAT+GGG + chr4.3:300239-300258 MS.gene046998:intron 40.0%
CATTTACCAGCTCAAAGATG+AGG - chr4.3:299413-299432 None:intergenic 40.0%
CTCATCTTTGAGCTGGTAAA+TGG + chr4.3:299411-299430 MS.gene046998:intron 40.0%
GGATATTCCAGAGAGAAAGA+TGG + chr4.3:299861-299880 MS.gene046998:CDS 40.0%
TACCAACAAGGGATGTATCT+GGG - chr4.3:300477-300496 None:intergenic 40.0%
TCACAGGCAATGGGAAAATA+TGG + chr4.3:300238-300257 MS.gene046998:intron 40.0%
TCACTGCAAACATGCTTCTA+GGG + chr4.3:300777-300796 MS.gene046998:CDS 40.0%
!! ATATCAAGTGATGGTGTTGC+TGG + chr4.3:300059-300078 MS.gene046998:CDS 40.0%
!! GCTGGTCATACATTTTCAAG+GGG - chr4.3:299666-299685 None:intergenic 40.0%
!! GGGATTCGGTGTTTCAATAT+TGG + chr4.3:300091-300110 MS.gene046998:CDS 40.0%
!! GGTTTCTTAGCTCTATTTCG+AGG + chr4.3:300752-300771 MS.gene046998:CDS 40.0%
AAAGAATCACCTCACCTGTG+TGG - chr4.3:299365-299384 None:intergenic 45.0%
AAGAATCACCTCACCTGTGT+GGG - chr4.3:299364-299383 None:intergenic 45.0%
ACTGGTCAGCGTCAGTTTAA+AGG + chr4.3:300011-300030 MS.gene046998:CDS 45.0%
CAATGAACACATAGCGATGC+TGG - chr4.3:299684-299703 None:intergenic 45.0%
CATGCATTCCGTGAGATTGT+TGG + chr4.3:300722-300741 MS.gene046998:CDS 45.0%
CCTCTTGTCCAACAATCTCA+CGG - chr4.3:300733-300752 None:intergenic 45.0%
CGTGAGATTGTTGGACAAGA+GGG + chr4.3:300731-300750 MS.gene046998:CDS 45.0%
GATGTACCCATCTTTCTCTC+TGG - chr4.3:299871-299890 None:intergenic 45.0%
GGACTTTGCACGTACAAGAT+TGG + chr4.3:299962-299981 MS.gene046998:CDS 45.0%
GGTCAAATCTCTCTCCTCTA+TGG + chr4.3:299533-299552 MS.gene046998:intron 45.0%
GTCACTGCAAACATGCTTCT+AGG + chr4.3:300776-300795 MS.gene046998:CDS 45.0%
TAGAGGAGAGAGATTTGACC+TGG - chr4.3:299533-299552 None:intergenic 45.0%
TTCCCAGATACATCCCTTGT+TGG + chr4.3:300472-300491 MS.gene046998:intron 45.0%
TTGGGAATCACCATGTATCG+AGG + chr4.3:300110-300129 MS.gene046998:CDS 45.0%
TTTAAACTGACGCTGACCAG+TGG - chr4.3:300012-300031 None:intergenic 45.0%
! AAACATGCTTCTAGGGATGG+CGG + chr4.3:300784-300803 MS.gene046998:CDS 45.0%
! GATATTTTCCCACACAGGTG+AGG + chr4.3:299353-299372 MS.gene046998:intron 45.0%
! TGCAAACATGCTTCTAGGGA+TGG + chr4.3:300781-300800 MS.gene046998:CDS 45.0%
! TGGAGCATCACAACTGTATC+TGG + chr4.3:300617-300636 MS.gene046998:CDS 45.0%
!! GGTACATCAAGTGGTTTGCT+GGG + chr4.3:299883-299902 MS.gene046998:CDS 45.0%
!!! AATTGGTGCCACTGCAGTTT+TGG - chr4.3:299179-299198 None:intergenic 45.0%
ATACTTATTCTGGTGCCCGG+AGG - chr4.3:300690-300709 None:intergenic 50.0%
CCGTGAGATTGTTGGACAAG+AGG + chr4.3:300730-300749 MS.gene046998:CDS 50.0%
CGACGGCGTAATGTGTCAAA+AGG - chr4.3:300656-300675 None:intergenic 50.0%
CGGAGGTTAGCATCATACGA+CGG - chr4.3:300673-300692 None:intergenic 50.0%
CGTCGTATGATGCTAACCTC+CGG + chr4.3:300671-300690 MS.gene046998:CDS 50.0%
GTCGTATGATGCTAACCTCC+GGG + chr4.3:300672-300691 MS.gene046998:CDS 50.0%
TTTGCTGGGAATGTGGCTTC+AGG + chr4.3:299897-299916 MS.gene046998:CDS 50.0%
! AACATGCTTCTAGGGATGGC+GGG + chr4.3:300785-300804 MS.gene046998:CDS 50.0%
! AAGAGGGTCTCCTTGCCTTT+TGG + chr4.3:299305-299324 MS.gene046998:CDS 50.0%
! ATGGCACTGGACTGAATCAG+TGG - chr4.3:299988-300007 None:intergenic 50.0%
! GGGTACATCAAGTGGTTTGC+TGG + chr4.3:299882-299901 MS.gene046998:CDS 50.0%
!! ATGGTGTTGCTGGCTTGTAC+AGG + chr4.3:300069-300088 MS.gene046998:CDS 50.0%
!! CAAGTGGTTTGCTGGGAATG+TGG + chr4.3:299890-299909 MS.gene046998:CDS 50.0%
!! TGGTGTTGCTGGCTTGTACA+GGG + chr4.3:300070-300089 MS.gene046998:CDS 50.0%
GGTGACCTCTCCAAAAGGCA+AGG - chr4.3:299318-299337 None:intergenic 55.0%
!! GCTGGCTTGTACAGGGGATT+CGG + chr4.3:300077-300096 MS.gene046998:CDS 55.0%
!! GGTCTCCTTGCCTTTTGGAG+AGG + chr4.3:299310-299329 MS.gene046998:CDS 55.0%
!! GGTGTTGCTGGCTTGTACAG+GGG + chr4.3:300071-300090 MS.gene046998:CDS 55.0%
!! TGCCTTTTGGAGAGGTCACC+AGG + chr4.3:299318-299337 MS.gene046998:CDS 55.0%
ACTGACGCTGACCAGTGGCA+TGG - chr4.3:300007-300026 None:intergenic 60.0%
GGCCTGGTGACCTCTCCAAA+AGG - chr4.3:299323-299342 None:intergenic 60.0%
TCAGTCCAGTGCCATGCCAC+TGG + chr4.3:299993-300012 MS.gene046998:CDS 60.0%
TGTGGCTTCAGGCAGTGCTG+CGG + chr4.3:299908-299927 MS.gene046998:CDS 60.0%
!! TTCTAGGGATGGCGGGAGCT+GGG + chr4.3:300792-300811 MS.gene046998:CDS 60.0%
GCTGACCAGTGGCATGGCAC+TGG - chr4.3:300001-300020 None:intergenic 65.0%
GTGGCTTCAGGCAGTGCTGC+GGG + chr4.3:299909-299928 MS.gene046998:CDS 65.0%
!! CTTCTAGGGATGGCGGGAGC+TGG + chr4.3:300791-300810 MS.gene046998:CDS 65.0%
!! TCTAGGGATGGCGGGAGCTG+GGG + chr4.3:300793-300812 MS.gene046998:CDS 65.0%
! CGGGAGCTGGGGTGCTTGCT+GGG + chr4.3:300804-300823 MS.gene046998:CDS 70.0%
! GCGGGAGCTGGGGTGCTTGC+TGG + chr4.3:300803-300822 MS.gene046998:CDS 75.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 299109 300898 299109 ID=MS.gene046998
chr4.3 mRNA 299109 300898 299109 ID=MS.gene046998.t1;Parent=MS.gene046998
chr4.3 exon 299109 299369 299109 ID=MS.gene046998.t1.exon1;Parent=MS.gene046998.t1
chr4.3 CDS 299109 299369 299109 ID=cds.MS.gene046998.t1;Parent=MS.gene046998.t1
chr4.3 exon 299819 300190 299819 ID=MS.gene046998.t1.exon2;Parent=MS.gene046998.t1
chr4.3 CDS 299819 300190 299819 ID=cds.MS.gene046998.t1;Parent=MS.gene046998.t1
chr4.3 exon 300587 300898 300587 ID=MS.gene046998.t1.exon3;Parent=MS.gene046998.t1
chr4.3 CDS 300587 300898 300587 ID=cds.MS.gene046998.t1;Parent=MS.gene046998.t1
Gene Sequence

>MS.gene046998

ATGGTAAAATCAGAATCAGAATCATTTTCAAAGGATTTTGTAATGGGAGGTGCAGCAGCAATCATATCCAAAACTGCAGTGGCACCAATTGAAAGAGTGAAGCTTTTATTACAAAACCAAAGCGAAATGATTAAAAGAGGAAACCTAAAAACACCATACCTTGGTTTGTCTAATACCTTTAAAAGAGTCTTTGCTGAAGAGGGTCTCCTTGCCTTTTGGAGAGGTCACCAGGCCAATGTTATTAGATATTTTCCCACACAGGTGAGGTGATTCTTTGTTATTCATCATAATATATTATTTACCTCATCTTTGAGCTGGTAAATGGATATTATAGCCTATTATACTTGTTTTGTAATGTTTTTGGCAAAATGACATGCTATATGTTGTGAATGCCCGTGTTGTAATTAGTTCACTAAAAAGTCCAGGTCAAATCTCTCTCCTCTATGGACATTAGTTTAGTTTTTCCCTCAAATAATTCTCAATTTCAATTAAAACATACAGAGGTTACCTCACGTATATCAAATTCTCATACAAAATCACTTCCATCGTTTTTACCCCTTGAAAATGTATGACCAGCATCGCTATGTGTTCATTGTCACTTGTATAAAAGAATAACCCGTATTTTGTATTCCAATCAAACCCTGCACTCAAATAACAGTCTTTTTGCATATTAAAAATAATATTTGAGCAAACAGTTAATTGGTCTATAGGCTTTCAATTTTGCATTCAAAGGTTACTTCAAAAGCATCTTTGGATATTCCAGAGAGAAAGATGGGTACATCAAGTGGTTTGCTGGGAATGTGGCTTCAGGCAGTGCTGCGGGAGCTACTACCTCAATACTTTTGTATCATTTGGACTTTGCACGTACAAGATTGGCCACTGATTCAGTCCAGTGCCATGCCACTGGTCAGCGTCAGTTTAAAGGACTAATTCATGTATATCGTAAAACAATATCAAGTGATGGTGTTGCTGGCTTGTACAGGGGATTCGGTGTTTCAATATTGGGAATCACCATGTATCGAGGAATGTACTTTGGGATATATGACACCATGAAGCCTATTGTTTTAGTTGGACCTTTTGAGGTAAGCATTTATACATTTATAATTACATTACAACATAGATCTATAATTCACAGGCAATGGGAAAATATGGGGTTAATAATTGCTTCTCTTGGCTCAATTTTTTTCGTCTGTTCCATGTTAGGTATGCATGCCAATATTAGAGTTTTTATATTATGCTGCTTATATTGATGGTCGAACCCTTACCTTTAATTTTAACATACATCTTCAAGAGTATGACACATGACAAGTTAGACAACAGTAATTTGGAAAAGTAATTTACTGATTTTTCTCATCATAAACTTTTCCCAGATACATCCCTTGTTGGTATAGCATTTTGATGAATTTATGTCAGAGCATTGGTTCTGTTTATTTATGCCCTTTCATTGGAATATGAGTCTTTTGATTTATATTCTGCAGGGGAACTTCTTTGCTAGTTTCTTGTTAGGTTGGAGCATCACAACTGTATCTGGTGTCTGTGCATATCCTTTTGACACATTACGCCGTCGTATGATGCTAACCTCCGGGCACCAGAATAAGTATTATAATGCAATGCATGCATTCCGTGAGATTGTTGGACAAGAGGGTTTCTTAGCTCTATTTCGAGGAGTCACTGCAAACATGCTTCTAGGGATGGCGGGAGCTGGGGTGCTTGCTGGGTACGATCAGCTAAACCGTATCTCATCTAGACACAGTAACTATAATGAAACGAACCAGAGAGTCATGAAATAA
Protein sequence

>MS.gene046998.t1

MVKSESESFSKDFVMGGAAAIISKTAVAPIERVKLLLQNQSEMIKRGNLKTPYLGLSNTFKRVFAEEGLLAFWRGHQANVIRYFPTQAFNFAFKGYFKSIFGYSREKDGYIKWFAGNVASGSAAGATTSILLYHLDFARTRLATDSVQCHATGQRQFKGLIHVYRKTISSDGVAGLYRGFGVSILGITMYRGMYFGIYDTMKPIVLVGPFEGNFFASFLLGWSITTVSGVCAYPFDTLRRRMMLTSGHQNKYYNAMHAFREIVGQEGFLALFRGVTANMLLGMAGAGVLAGYDQLNRISSRHSNYNETNQRVMK