AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94558


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94558.t1 MTR_8g107270 93.709 302 19 0 11 312 16 317 0.0 593
MS.gene94558.t1 MTR_4g078545 59.233 287 117 0 12 298 74 360 2.69e-124 360
MS.gene94558.t1 MTR_3g028590 58.020 293 123 0 4 296 84 376 2.30e-123 359
MS.gene94558.t1 MTR_3g028590 58.020 293 123 0 4 296 88 380 2.95e-123 358
MS.gene94558.t1 MTR_8g036880 58.446 296 122 1 4 298 93 388 9.71e-120 350
MS.gene94558.t1 MTR_2g098070 58.528 299 120 1 2 296 51 349 1.95e-117 343
MS.gene94558.t1 MTR_3g104500 36.054 294 181 5 8 297 29 319 2.85e-60 195
MS.gene94558.t1 MTR_8g027975 29.392 296 174 9 8 278 46 331 2.83e-31 120
MS.gene94558.t1 MTR_3g104600 31.935 310 162 13 2 280 18 309 1.62e-30 118
MS.gene94558.t1 MTR_5g009500 29.043 303 164 10 8 278 33 316 1.82e-30 118
MS.gene94558.t1 MTR_5g009500 25.616 203 134 4 16 207 144 340 1.70e-11 64.7
MS.gene94558.t1 MTR_6g091800 27.129 317 191 11 9 303 15 313 9.13e-28 110
MS.gene94558.t1 MTR_4g016730 28.214 280 171 8 24 298 100 354 4.66e-27 109
MS.gene94558.t1 MTR_8g096050 27.562 283 185 6 10 288 224 490 1.02e-26 110
MS.gene94558.t1 MTR_7g064980 28.065 310 192 10 12 304 24 319 2.32e-26 106
MS.gene94558.t1 MTR_7g068340 27.798 277 179 8 24 298 98 355 4.60e-26 106
MS.gene94558.t1 MTR_6g091800 28.854 253 147 7 9 246 15 249 6.31e-25 101
MS.gene94558.t1 MTR_6g091800 26.686 341 186 12 9 303 15 337 6.72e-25 102
MS.gene94558.t1 MTR_6g091800 26.909 275 166 9 9 266 15 271 1.28e-24 100
MS.gene94558.t1 MTR_6g091800 27.244 312 167 10 9 278 15 308 2.76e-24 100
MS.gene94558.t1 MTR_3g107510 28.214 280 171 10 16 288 125 381 3.90e-24 101
MS.gene94558.t1 MTR_3g107510 27.670 206 120 6 8 206 211 394 2.28e-15 76.6
MS.gene94558.t1 MTR_1g012030 27.027 296 185 10 11 298 137 409 6.21e-24 101
MS.gene94558.t1 MTR_1g012030 28.079 203 123 6 8 206 228 411 1.24e-15 77.4
MS.gene94558.t1 MTR_3g098460 26.148 283 189 6 10 288 202 468 7.46e-24 101
MS.gene94558.t1 MTR_7g084400 27.046 281 180 7 13 288 213 473 1.95e-23 100
MS.gene94558.t1 MTR_7g084400 24.737 190 127 4 13 202 309 482 2.17e-11 64.7
MS.gene94558.t1 MTR_6g091800 28.102 274 146 7 9 246 15 273 7.00e-22 93.6
MS.gene94558.t1 MTR_8g090210 28.387 310 164 10 8 288 105 385 1.58e-21 94.4
MS.gene94558.t1 MTR_6g091800 26.087 299 162 9 9 266 15 295 1.76e-21 92.8
MS.gene94558.t1 MTR_3g074490 27.393 303 172 9 10 288 113 391 8.84e-21 92.0
MS.gene94558.t1 MTR_2g436930 23.148 324 211 8 2 293 1 318 2.95e-20 89.7
MS.gene94558.t1 MTR_4g114320 25.170 294 193 10 11 298 121 393 5.55e-20 89.7
MS.gene94558.t1 MTR_5g081150 25.614 285 196 6 12 288 33 309 9.55e-19 85.5
MS.gene94558.t1 MTR_6g091800 30.220 182 103 6 9 179 15 183 4.09e-18 81.3
MS.gene94558.t1 MTR_4g119770 22.393 326 213 7 5 296 3 322 6.11e-18 83.2
MS.gene94558.t1 MTR_6g092210 25.000 260 176 7 56 303 1 253 8.25e-17 79.0
MS.gene94558.t1 MTR_6g034145 24.535 269 172 8 56 303 1 259 1.94e-16 78.2
MS.gene94558.t1 MTR_7g084400 29.688 192 117 5 13 202 207 382 1.20e-15 77.4
MS.gene94558.t1 MTR_7g109135 23.469 294 209 10 16 302 25 309 1.24e-15 76.6
MS.gene94558.t1 MTR_4g119770 23.462 260 170 5 5 241 3 256 2.64e-15 74.7
MS.gene94558.t1 MTR_6g091800 29.126 206 98 7 9 179 15 207 6.84e-15 72.8
MS.gene94558.t1 MTR_4g005330 21.333 300 192 5 11 288 64 341 2.47e-13 70.1
MS.gene94558.t1 MTR_6g091910 25.373 201 133 4 9 202 15 205 5.16e-13 67.4
MS.gene94558.t1 MTR_5g081150 26.667 195 131 3 12 202 33 219 6.89e-13 67.8
MS.gene94558.t1 MTR_4g057850 23.051 295 196 11 14 295 23 299 6.91e-13 68.6
MS.gene94558.t1 MTR_5g081150 26.667 195 131 3 12 202 33 219 7.70e-13 67.4
MS.gene94558.t1 MTR_7g109135 22.973 296 201 10 16 302 25 302 2.87e-12 66.6
MS.gene94558.t1 MTR_4g005330 21.356 295 188 5 16 288 3 275 3.45e-12 66.2
MS.gene94558.t1 MTR_5g032420 21.843 293 197 6 11 274 4 293 1.56e-11 64.7
MS.gene94558.t1 MTR_5g030530 24.211 285 187 8 10 279 5 275 2.55e-11 63.5
MS.gene94558.t1 MTR_1g097890 22.295 305 188 9 14 310 52 315 3.90e-11 63.2
MS.gene94558.t1 MTR_7g066690 20.803 274 206 6 8 278 12 277 6.84e-11 62.4
MS.gene94558.t1 MTR_3g462140 21.575 292 183 6 8 278 10 276 8.20e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94558.t1 AT5G17400 75.503 298 73 0 5 302 6 303 2.73e-164 459
MS.gene94558.t1 AT4G28390 60.345 290 115 0 9 298 79 368 3.52e-124 360
MS.gene94558.t1 AT4G28390 60.345 290 115 0 9 298 79 368 3.52e-124 360
MS.gene94558.t1 AT5G13490 58.219 292 121 1 8 298 83 374 4.06e-119 348
MS.gene94558.t1 AT5G13490 58.219 292 121 1 8 298 83 374 4.06e-119 348
MS.gene94558.t1 AT3G08580 57.192 292 124 1 8 298 79 370 1.19e-116 342
MS.gene94558.t1 AT3G08580 57.192 292 124 1 8 298 79 370 1.19e-116 342
MS.gene94558.t1 AT5G56450 37.667 300 170 8 9 297 30 323 1.33e-58 191
MS.gene94558.t1 AT2G37890 29.966 297 191 7 11 298 43 331 3.20e-33 125
MS.gene94558.t1 AT4G26180 31.469 286 169 9 9 280 17 289 3.56e-33 124
MS.gene94558.t1 AT4G26180 31.469 286 169 9 9 280 17 289 8.04e-33 124
MS.gene94558.t1 AT4G01100 29.412 306 163 8 7 278 36 322 7.80e-31 119
MS.gene94558.t1 AT1G14560 33.213 277 147 12 24 278 38 298 2.74e-29 114
MS.gene94558.t1 AT1G14560 32.609 276 150 11 24 278 38 298 4.57e-29 114
MS.gene94558.t1 AT5G01500 28.881 277 176 9 24 298 130 387 6.34e-29 115
MS.gene94558.t1 AT3G51870 27.536 276 181 7 24 298 102 359 8.60e-29 114
MS.gene94558.t1 AT4G01100 30.063 316 162 10 7 278 36 336 1.57e-28 113
MS.gene94558.t1 AT4G01100 29.210 291 153 8 22 278 1 272 3.98e-28 110
MS.gene94558.t1 AT3G55640 28.094 299 188 10 3 288 29 313 4.47e-28 111
MS.gene94558.t1 AT3G55640 28.094 299 188 10 3 288 29 313 4.47e-28 111
MS.gene94558.t1 AT3G53940 27.687 307 197 8 11 304 71 365 8.34e-28 111
MS.gene94558.t1 AT3G53940 25.366 205 135 4 8 209 175 364 5.69e-11 63.2
MS.gene94558.t1 AT3G21390 25.714 315 193 7 12 293 18 324 6.03e-24 100
MS.gene94558.t1 AT3G21390 25.714 315 193 7 12 293 40 346 9.89e-24 100
MS.gene94558.t1 AT5G61810 28.571 273 167 7 10 278 62 310 1.25e-23 99.4
MS.gene94558.t1 AT5G61810 27.915 283 176 7 10 288 205 463 2.54e-23 100
MS.gene94558.t1 AT3G55640 30.144 209 123 7 3 202 29 223 5.33e-23 96.3
MS.gene94558.t1 AT3G55640 30.144 209 123 7 3 202 29 223 5.33e-23 96.3
MS.gene94558.t1 AT5G51050 26.071 280 184 5 13 288 223 483 7.24e-23 99.0
MS.gene94558.t1 AT5G07320 26.740 273 168 8 22 288 218 464 8.03e-23 98.6
MS.gene94558.t1 AT5G64970 28.146 302 171 10 10 288 132 410 9.58e-21 92.4
MS.gene94558.t1 AT5G64970 28.571 294 164 10 10 280 132 402 2.18e-20 91.3
MS.gene94558.t1 AT5G48970 24.854 342 202 12 2 299 8 338 4.90e-20 89.4
MS.gene94558.t1 AT4G32400 26.298 289 175 11 11 288 112 373 3.32e-19 87.8
MS.gene94558.t1 AT3G53940 28.500 200 123 4 11 202 71 258 3.33e-19 86.3
MS.gene94558.t1 AT3G20240 22.330 309 180 7 10 288 49 327 3.53e-19 87.0
MS.gene94558.t1 AT5G64970 28.053 303 171 11 10 288 7 286 3.66e-19 86.3
MS.gene94558.t1 AT1G78180 28.620 297 164 11 16 288 131 403 2.42e-16 79.3
MS.gene94558.t1 AT1G14560 31.868 182 103 6 117 280 24 202 9.48e-16 75.5
MS.gene94558.t1 AT3G54110 24.643 280 188 9 8 278 10 275 9.58e-15 73.9
MS.gene94558.t1 AT5G48970 24.908 273 160 9 61 299 6 267 3.33e-14 72.0
MS.gene94558.t1 AT5G58970 22.517 302 224 7 8 306 11 305 1.43e-13 70.5
MS.gene94558.t1 AT5G66380 27.368 190 132 4 113 298 5 192 9.27e-13 68.2
MS.gene94558.t1 AT5G01340 26.738 187 124 3 17 199 116 293 5.68e-12 65.9
MS.gene94558.t1 AT1G79900 26.106 226 141 6 58 275 51 258 1.39e-11 64.7
MS.gene94558.t1 AT1G34065 22.295 305 185 9 11 304 73 336 9.21e-11 62.4

Find 78 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGGGAGCTGGGGTGCTTGC+TGG 0.170497 4.1:+301893 MS.gene94558:CDS
AAGAGGGCCTCCTTGCCTTT+TGG 0.226070 4.1:+300394 MS.gene94558:CDS
TTGCATTATAATACTTATTC+TGG 0.231839 4.1:-301787 None:intergenic
GGGATTCGGTGTTTCAATAT+TGG 0.231853 4.1:+301181 MS.gene94558:CDS
GGTTACTTCAAAAGCATCTT+TGG 0.242168 4.1:+300930 MS.gene94558:CDS
CTTCTAGGGATGGCGGGAGC+TGG 0.249873 4.1:+301881 MS.gene94558:CDS
AATTGGTGCCACTGCAGTTT+TGG 0.258307 4.1:-300265 None:intergenic
ACTGGTCAGCGTCAGTTTAA+AGG 0.284312 4.1:+301101 MS.gene94558:CDS
TTCTTTGCTAGTTTCTTGTT+AGG 0.299649 4.1:+301683 MS.gene94558:CDS
TTCTAGGGATGGCGGGAGCT+GGG 0.318989 4.1:+301882 MS.gene94558:CDS
GGATTCGGTGTTTCAATATT+GGG 0.326349 4.1:+301182 MS.gene94558:CDS
GTCACTGCAAACATGCTTCT+AGG 0.326966 4.1:+301866 MS.gene94558:CDS
TTGCTAGTTTCTTGTTAGGT+TGG 0.348330 4.1:+301687 MS.gene94558:CDS
AACTAAAACAATAGGCTTCA+TGG 0.352724 4.1:-301246 None:intergenic
GGGTACATCAAGTGGTTTGC+TGG 0.371317 4.1:+300972 MS.gene94558:CDS
AAAAGCTTCACTCTTTCAAT+TGG 0.371863 4.1:-300282 None:intergenic
TCATTTATTTCATGACTCTC+TGG 0.377926 4.1:-301970 None:intergenic
TGGAGCATCACAACTGTATC+TGG 0.393342 4.1:+301707 MS.gene94558:CDS
CGGGAGCTGGGGTGCTTGCT+GGG 0.401594 4.1:+301894 MS.gene94558:CDS
AAAGGTCCAACTAAAACAAT+AGG 0.409592 4.1:-301254 None:intergenic
GGACTTTGCACGTACAAGAT+TGG 0.415555 4.1:+301052 MS.gene94558:CDS
TTTGCTGGGAATGTGGCTTC+AGG 0.417717 4.1:+300987 MS.gene94558:CDS
ATGGTGTTGCTGGCTTGTAC+AGG 0.427812 4.1:+301159 MS.gene94558:CDS
ATATCAAGTGATGGTGTTGC+TGG 0.431324 4.1:+301149 MS.gene94558:CDS
TGTATCGAGGAATGTACTTT+GGG 0.438762 4.1:+301213 MS.gene94558:CDS
GATGTACCCATCTTTCTCTC+TGG 0.444325 4.1:-300958 None:intergenic
GTATAAATGCTTACCTCAAA+AGG 0.445098 4.1:-301272 None:intergenic
GCTGGCTTGTACAGGGGATT+CGG 0.454958 4.1:+301167 MS.gene94558:CDS
CATGCATTCCGTGAGATTGT+TGG 0.459314 4.1:+301812 MS.gene94558:CDS
GTGGCTTCAGGCAGTGCTGC+GGG 0.459875 4.1:+300999 MS.gene94558:CDS
GCTGACCAGTGGCATGGCAC+TGG 0.477809 4.1:-301088 None:intergenic
CGTGAGATTGTTGGACAAGA+GGG 0.488183 4.1:+301821 MS.gene94558:CDS
ATGTATCGAGGAATGTACTT+TGG 0.489826 4.1:+301212 MS.gene94558:CDS
ATAATACTTATTCTGGTGCC+CGG 0.509415 4.1:-301780 None:intergenic
TACTGTGTCTAGATGAGATA+CGG 0.509802 4.1:-301931 None:intergenic
TAAAAGAGTCTTTGCTGAAG+AGG 0.515498 4.1:+300377 MS.gene94558:CDS
TCTAGGGATGGCGGGAGCTG+GGG 0.518411 4.1:+301883 MS.gene94558:CDS
CGACGGCGTAATGTGTCAAA+AGG 0.519765 4.1:-301743 None:intergenic
AAAAGAGTCTTTGCTGAAGA+GGG 0.521037 4.1:+300378 MS.gene94558:CDS
GGATATTCCAGAGAGAAAGA+TGG 0.522046 4.1:+300951 MS.gene94558:CDS
GGTGTTGCTGGCTTGTACAG+GGG 0.525521 4.1:+301161 MS.gene94558:CDS
AATATCTAATAACATTGGCC+TGG 0.525661 4.1:-300425 None:intergenic
TGGTGTTGCTGGCTTGTACA+GGG 0.527675 4.1:+301160 MS.gene94558:CDS
GGTTTCTTAGCTCTATTTCG+AGG 0.528923 4.1:+301842 MS.gene94558:CDS
CAAAGCGAAATGATTAAAAG+AGG 0.529225 4.1:+300315 MS.gene94558:CDS
CGTCGTATGATGCTAACCTC+CGG 0.530080 4.1:+301761 MS.gene94558:CDS
TCACTGCAAACATGCTTCTA+GGG 0.533524 4.1:+301867 MS.gene94558:CDS
GGCCTGGTGACCTCTCCAAA+AGG 0.537477 4.1:-300409 None:intergenic
TCAGTCCAGTGCCATGCCAC+TGG 0.539129 4.1:+301083 MS.gene94558:CDS
GATATTCCAGAGAGAAAGAT+GGG 0.540943 4.1:+300952 MS.gene94558:CDS
CCGTGAGATTGTTGGACAAG+AGG 0.542206 4.1:+301820 MS.gene94558:CDS
GTCGTATGATGCTAACCTCC+GGG 0.550555 4.1:+301762 MS.gene94558:CDS
AACATGCTTCTAGGGATGGC+GGG 0.552983 4.1:+301875 MS.gene94558:CDS
AAAGTACATTCCTCGATACA+TGG 0.553101 4.1:-301210 None:intergenic
TGTGGCTTCAGGCAGTGCTG+CGG 0.558659 4.1:+300998 MS.gene94558:CDS
TAAAGGTATTAGACAAACCA+AGG 0.560990 4.1:-300356 None:intergenic
GGTACATCAAGTGGTTTGCT+GGG 0.566321 4.1:+300973 MS.gene94558:CDS
CAAATGATACAAAAGTATTG+AGG 0.568033 4.1:-301030 None:intergenic
TGCAAACATGCTTCTAGGGA+TGG 0.571454 4.1:+301871 MS.gene94558:CDS
CGTAAAACAATATCAAGTGA+TGG 0.574072 4.1:+301140 MS.gene94558:CDS
AACCTCAAAACACCATACCT+TGG 0.575189 4.1:+300339 MS.gene94558:CDS
AAGAATCACCTCACCTGTGT+GGG 0.577980 4.1:-300450 None:intergenic
GGGAAAATATCTAATAACAT+TGG 0.589711 4.1:-300430 None:intergenic
GTATTAGACAAACCAAGGTA+TGG 0.595810 4.1:-300351 None:intergenic
CAAGTGGTTTGCTGGGAATG+TGG 0.602125 4.1:+300980 MS.gene94558:CDS
AGAAAGATGGGTACATCAAG+TGG 0.605042 4.1:+300964 MS.gene94558:CDS
CCTCTTGTCCAACAATCTCA+CGG 0.613033 4.1:-301820 None:intergenic
GGTGACCTCTCCAAAAGGCA+AGG 0.614061 4.1:-300404 None:intergenic
AAACATGCTTCTAGGGATGG+CGG 0.631697 4.1:+301874 MS.gene94558:CDS
ACTGACGCTGACCAGTGGCA+TGG 0.638244 4.1:-301094 None:intergenic
AAAGAATCACCTCACCTGTG+TGG 0.643453 4.1:-300451 None:intergenic
TTTAAACTGACGCTGACCAG+TGG 0.653683 4.1:-301099 None:intergenic
TTGGGAATCACCATGTATCG+AGG 0.659477 4.1:+301200 MS.gene94558:CDS
AATCATATCCAAAACTGCAG+TGG 0.672395 4.1:+300257 MS.gene94558:CDS
ATGGCACTGGACTGAATCAG+TGG 0.678456 4.1:-301075 None:intergenic
GACCTCTCCAAAAGGCAAGG+AGG 0.692417 4.1:-300401 None:intergenic
ATACTTATTCTGGTGCCCGG+AGG 0.698949 4.1:-301777 None:intergenic
CGGAGGTTAGCATCATACGA+CGG 0.749578 4.1:-301760 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATAAAAACTCTAATAT+TGG - chr4.1:301414-301433 None:intergenic 10.0%
!! AAGATGTATGTTAAAATTAA+AGG - chr4.1:301466-301485 None:intergenic 15.0%
!! TATGTTAAAATTAAAGGTAA+GGG - chr4.1:301460-301479 None:intergenic 15.0%
!! AATTTCAATTAAACATACAG+AGG + chr4.1:300680-300699 MS.gene94558:intron 20.0%
!! CATTACAAAACAAGTATAAT+AGG - chr4.1:300535-300554 None:intergenic 20.0%
!! GTATGTTAAAATTAAAGGTA+AGG - chr4.1:301461-301480 None:intergenic 20.0%
!! TGAAATTGAGAATTATTTGA+GGG - chr4.1:300667-300686 None:intergenic 20.0%
!! TTGAAATTGAGAATTATTTG+AGG - chr4.1:300668-300687 None:intergenic 20.0%
!! TTGCATTATAATACTTATTC+TGG - chr4.1:301790-301809 None:intergenic 20.0%
!! TTTGATTGGAATACAAAATA+CGG - chr4.1:300818-300837 None:intergenic 20.0%
!!! ATTTTCAAAGGATTTTGTAA+TGG + chr4.1:300221-300240 MS.gene94558:CDS 20.0%
!!! TACTTGTTTTGTAATGTTTT+TGG + chr4.1:300539-300558 MS.gene94558:intron 20.0%
!!! TTTTCAAAGGATTTTGTAAT+GGG + chr4.1:300222-300241 MS.gene94558:CDS 20.0%
! AACATAGATCTATAATTCAC+AGG + chr4.1:301312-301331 MS.gene94558:intron 25.0%
! GGGAAAATATCTAATAACAT+TGG - chr4.1:300433-300452 None:intergenic 25.0%
! TATTTGAGCAAACAGTTAAT+TGG + chr4.1:300879-300898 MS.gene94558:intron 25.0%
! TTGATTGGAATACAAAATAC+GGG - chr4.1:300817-300836 None:intergenic 25.0%
!! AGAATCAGAATCATTTTCAA+AGG + chr4.1:300209-300228 MS.gene94558:CDS 25.0%
!! CTCAATACTTTTGTATCATT+TGG + chr4.1:301031-301050 MS.gene94558:CDS 25.0%
!! TATTATGCTGCTTATATTGA+TGG + chr4.1:301429-301448 MS.gene94558:intron 25.0%
!!! CAAATGATACAAAAGTATTG+AGG - chr4.1:301033-301052 None:intergenic 25.0%
!!! CTTTTGATTTATATTCTGCA+GGG + chr4.1:301656-301675 MS.gene94558:intron 25.0%
!!! TCTTTTGATTTATATTCTGC+AGG + chr4.1:301655-301674 MS.gene94558:intron 25.0%
!!! TTTTGATTTATATTCTGCAG+GGG + chr4.1:301657-301676 MS.gene94558:intron 25.0%
AAAAGCTTCACTCTTTCAAT+TGG - chr4.1:300285-300304 None:intergenic 30.0%
AAAGGTCCAACTAAAACAAT+AGG - chr4.1:301257-301276 None:intergenic 30.0%
AACTAAAACAATAGGCTTCA+TGG - chr4.1:301249-301268 None:intergenic 30.0%
AACTAAACTAATGTCCATAG+AGG - chr4.1:300641-300660 None:intergenic 30.0%
AATATCTAATAACATTGGCC+TGG - chr4.1:300428-300447 None:intergenic 30.0%
AGTGATCTAATTACAACACA+CGG - chr4.1:300594-300613 None:intergenic 30.0%
ATCAAAATGCTATACCAACA+AGG - chr4.1:301579-301598 None:intergenic 30.0%
ATCTATAATTCACAGGCAAT+GGG + chr4.1:301319-301338 MS.gene94558:intron 30.0%
ATGAATTTATGTCAGAGCAT+TGG + chr4.1:301597-301616 MS.gene94558:intron 30.0%
ATGAGAATTTGATATACGTG+AGG - chr4.1:300709-300728 None:intergenic 30.0%
ATTAGATCACTAAAAAGTCC+AGG + chr4.1:300603-300622 MS.gene94558:intron 30.0%
CAAAGCGAAATGATTAAAAG+AGG + chr4.1:300315-300334 MS.gene94558:CDS 30.0%
CAAGTTAGACAACAGTAATT+TGG + chr4.1:301504-301523 MS.gene94558:intron 30.0%
CGTAAAACAATATCAAGTGA+TGG + chr4.1:301140-301159 MS.gene94558:CDS 30.0%
GTATAAATGCTTACCTCAAA+AGG - chr4.1:301275-301294 None:intergenic 30.0%
TCAAAATGCTATACCAACAA+GGG - chr4.1:301578-301597 None:intergenic 30.0%
! CAAACAGTTAATTGGTCTAT+AGG + chr4.1:300887-300906 MS.gene94558:intron 30.0%
! CTCTTTTAATCATTTCGCTT+TGG - chr4.1:300317-300336 None:intergenic 30.0%
! GCTTTCAATTTTGCATTCAA+AGG + chr4.1:300909-300928 MS.gene94558:CDS 30.0%
! TATTAGATATTTTCCCACAC+AGG + chr4.1:300437-300456 MS.gene94558:CDS 30.0%
! TTCAGCAAAGACTCTTTTAA+AGG - chr4.1:300376-300395 None:intergenic 30.0%
! TTCTTTGCTAGTTTCTTGTT+AGG + chr4.1:301683-301702 MS.gene94558:CDS 30.0%
!! TAAAGGTATTAGACAAACCA+AGG - chr4.1:300359-300378 None:intergenic 30.0%
!!! ATGAAGCCTATTGTTTTAGT+TGG + chr4.1:301248-301267 MS.gene94558:CDS 30.0%
AAAAGAGTCTTTGCTGAAGA+GGG + chr4.1:300378-300397 MS.gene94558:CDS 35.0%
AAAGTACATTCCTCGATACA+TGG - chr4.1:301213-301232 None:intergenic 35.0%
AATCATATCCAAAACTGCAG+TGG + chr4.1:300257-300276 MS.gene94558:CDS 35.0%
ATAATACTTATTCTGGTGCC+CGG - chr4.1:301783-301802 None:intergenic 35.0%
ATGTATCGAGGAATGTACTT+TGG + chr4.1:301212-301231 MS.gene94558:CDS 35.0%
GATATTCCAGAGAGAAAGAT+GGG + chr4.1:300952-300971 MS.gene94558:CDS 35.0%
GATCTATAATTCACAGGCAA+TGG + chr4.1:301318-301337 MS.gene94558:intron 35.0%
GGGTTAATAATTGCTTCTCT+TGG + chr4.1:301350-301369 MS.gene94558:intron 35.0%
GTATTAGACAAACCAAGGTA+TGG - chr4.1:300354-300373 None:intergenic 35.0%
GTGATCTAATTACAACACAC+GGG - chr4.1:300593-300612 None:intergenic 35.0%
GTTTATTTATGCCCTTGCAT+TGG + chr4.1:301624-301643 MS.gene94558:intron 35.0%
TAAAAGAGTCTTTGCTGAAG+AGG + chr4.1:300377-300396 MS.gene94558:CDS 35.0%
TACTGTGTCTAGATGAGATA+CGG - chr4.1:301934-301953 None:intergenic 35.0%
TATTTACCTCATCTTTGAGC+TGG + chr4.1:300493-300512 MS.gene94558:intron 35.0%
TGTATCGAGGAATGTACTTT+GGG + chr4.1:301213-301232 MS.gene94558:CDS 35.0%
! AAAGACTGTTATTTGAGAGC+AGG - chr4.1:300842-300861 None:intergenic 35.0%
! AAGACTGTTATTTGAGAGCA+GGG - chr4.1:300841-300860 None:intergenic 35.0%
! ATGCTGGTCATACATTTTCA+AGG - chr4.1:300758-300777 None:intergenic 35.0%
! TGCTGGTCATACATTTTCAA+GGG - chr4.1:300757-300776 None:intergenic 35.0%
! TTGCTAGTTTCTTGTTAGGT+TGG + chr4.1:301687-301706 MS.gene94558:CDS 35.0%
! TTTTTCGTCTGTTCCATGTT+AGG + chr4.1:301380-301399 MS.gene94558:intron 35.0%
!! GGATTCGGTGTTTCAATATT+GGG + chr4.1:301182-301201 MS.gene94558:CDS 35.0%
!! GGTTACTTCAAAAGCATCTT+TGG + chr4.1:300930-300949 MS.gene94558:CDS 35.0%
!! TCAAAGGATTTTGTAATGGG+AGG + chr4.1:300225-300244 MS.gene94558:CDS 35.0%
!! TTTTCAAGGGGTAAAAACGA+TGG - chr4.1:300744-300763 None:intergenic 35.0%
!!! TGTTTTAGTTGGACCTTTTG+AGG + chr4.1:301259-301278 MS.gene94558:CDS 35.0%
AACCTCAAAACACCATACCT+TGG + chr4.1:300339-300358 MS.gene94558:CDS 40.0%
AAGACTCGTATTCCAATGCA+AGG - chr4.1:301639-301658 None:intergenic 40.0%
ACAGGCAATGGGAAAATATG+GGG + chr4.1:301330-301349 MS.gene94558:intron 40.0%
AGAAAGATGGGTACATCAAG+TGG + chr4.1:300964-300983 MS.gene94558:CDS 40.0%
AGACTCGTATTCCAATGCAA+GGG - chr4.1:301638-301657 None:intergenic 40.0%
ATACCAACAAGGGATGTATC+TGG - chr4.1:301568-301587 None:intergenic 40.0%
ATTGGCATGCATACCTAACA+TGG - chr4.1:301396-301415 None:intergenic 40.0%
ATTTGAGAGCAGGGTTTGAT+TGG - chr4.1:300832-300851 None:intergenic 40.0%
CACAGGCAATGGGAAAATAT+GGG + chr4.1:301329-301348 MS.gene94558:intron 40.0%
CATTTACCAGCTCAAAGATG+AGG - chr4.1:300502-300521 None:intergenic 40.0%
CTCATCTTTGAGCTGGTAAA+TGG + chr4.1:300500-300519 MS.gene94558:intron 40.0%
GGATATTCCAGAGAGAAAGA+TGG + chr4.1:300951-300970 MS.gene94558:CDS 40.0%
TACCAACAAGGGATGTATCT+GGG - chr4.1:301567-301586 None:intergenic 40.0%
TCACAGGCAATGGGAAAATA+TGG + chr4.1:301328-301347 MS.gene94558:intron 40.0%
TCACTGCAAACATGCTTCTA+GGG + chr4.1:301867-301886 MS.gene94558:CDS 40.0%
! AACCAAGGTATGGTGTTTTG+AGG - chr4.1:300344-300363 None:intergenic 40.0%
!! ATATCAAGTGATGGTGTTGC+TGG + chr4.1:301149-301168 MS.gene94558:CDS 40.0%
!! GCTGGTCATACATTTTCAAG+GGG - chr4.1:300756-300775 None:intergenic 40.0%
!! GGGATTCGGTGTTTCAATAT+TGG + chr4.1:301181-301200 MS.gene94558:CDS 40.0%
!! GGTTTCTTAGCTCTATTTCG+AGG + chr4.1:301842-301861 MS.gene94558:CDS 40.0%
AAAGAATCACCTCACCTGTG+TGG - chr4.1:300454-300473 None:intergenic 45.0%
AAGAATCACCTCACCTGTGT+GGG - chr4.1:300453-300472 None:intergenic 45.0%
ACTGGTCAGCGTCAGTTTAA+AGG + chr4.1:301101-301120 MS.gene94558:CDS 45.0%
CAATGAACACATAGCGATGC+TGG - chr4.1:300774-300793 None:intergenic 45.0%
CATGCATTCCGTGAGATTGT+TGG + chr4.1:301812-301831 MS.gene94558:CDS 45.0%
CCTCTTGTCCAACAATCTCA+CGG - chr4.1:301823-301842 None:intergenic 45.0%
CGTGAGATTGTTGGACAAGA+GGG + chr4.1:301821-301840 MS.gene94558:CDS 45.0%
GATGTACCCATCTTTCTCTC+TGG - chr4.1:300961-300980 None:intergenic 45.0%
GGACTTTGCACGTACAAGAT+TGG + chr4.1:301052-301071 MS.gene94558:CDS 45.0%
GGTCAAATCTCTCTCCTCTA+TGG + chr4.1:300624-300643 MS.gene94558:intron 45.0%
GTCACTGCAAACATGCTTCT+AGG + chr4.1:301866-301885 MS.gene94558:CDS 45.0%
TAGAGGAGAGAGATTTGACC+TGG - chr4.1:300624-300643 None:intergenic 45.0%
TTCCCAGATACATCCCTTGT+TGG + chr4.1:301562-301581 MS.gene94558:intron 45.0%
TTGGGAATCACCATGTATCG+AGG + chr4.1:301200-301219 MS.gene94558:CDS 45.0%
TTTAAACTGACGCTGACCAG+TGG - chr4.1:301102-301121 None:intergenic 45.0%
! AAACATGCTTCTAGGGATGG+CGG + chr4.1:301874-301893 MS.gene94558:CDS 45.0%
! GATATTTTCCCACACAGGTG+AGG + chr4.1:300442-300461 MS.gene94558:intron 45.0%
! TGCAAACATGCTTCTAGGGA+TGG + chr4.1:301871-301890 MS.gene94558:CDS 45.0%
! TGGAGCATCACAACTGTATC+TGG + chr4.1:301707-301726 MS.gene94558:CDS 45.0%
!! GGTACATCAAGTGGTTTGCT+GGG + chr4.1:300973-300992 MS.gene94558:CDS 45.0%
!!! AATTGGTGCCACTGCAGTTT+TGG - chr4.1:300268-300287 None:intergenic 45.0%
ATACTTATTCTGGTGCCCGG+AGG - chr4.1:301780-301799 None:intergenic 50.0%
CCGTGAGATTGTTGGACAAG+AGG + chr4.1:301820-301839 MS.gene94558:CDS 50.0%
CGACGGCGTAATGTGTCAAA+AGG - chr4.1:301746-301765 None:intergenic 50.0%
CGGAGGTTAGCATCATACGA+CGG - chr4.1:301763-301782 None:intergenic 50.0%
CGTCGTATGATGCTAACCTC+CGG + chr4.1:301761-301780 MS.gene94558:CDS 50.0%
GTCGTATGATGCTAACCTCC+GGG + chr4.1:301762-301781 MS.gene94558:CDS 50.0%
TTTGCTGGGAATGTGGCTTC+AGG + chr4.1:300987-301006 MS.gene94558:CDS 50.0%
! AACATGCTTCTAGGGATGGC+GGG + chr4.1:301875-301894 MS.gene94558:CDS 50.0%
! ATGGCACTGGACTGAATCAG+TGG - chr4.1:301078-301097 None:intergenic 50.0%
! GGGTACATCAAGTGGTTTGC+TGG + chr4.1:300972-300991 MS.gene94558:CDS 50.0%
!! ATGGTGTTGCTGGCTTGTAC+AGG + chr4.1:301159-301178 MS.gene94558:CDS 50.0%
!! CAAGTGGTTTGCTGGGAATG+TGG + chr4.1:300980-300999 MS.gene94558:CDS 50.0%
!! TGGTGTTGCTGGCTTGTACA+GGG + chr4.1:301160-301179 MS.gene94558:CDS 50.0%
GACCTCTCCAAAAGGCAAGG+AGG - chr4.1:300404-300423 None:intergenic 55.0%
GGTGACCTCTCCAAAAGGCA+AGG - chr4.1:300407-300426 None:intergenic 55.0%
! AAGAGGGCCTCCTTGCCTTT+TGG + chr4.1:300394-300413 MS.gene94558:CDS 55.0%
!! GCTGGCTTGTACAGGGGATT+CGG + chr4.1:301167-301186 MS.gene94558:CDS 55.0%
!! GGTGTTGCTGGCTTGTACAG+GGG + chr4.1:301161-301180 MS.gene94558:CDS 55.0%
!! TGCCTTTTGGAGAGGTCACC+AGG + chr4.1:300407-300426 MS.gene94558:CDS 55.0%
ACTGACGCTGACCAGTGGCA+TGG - chr4.1:301097-301116 None:intergenic 60.0%
GGCCTGGTGACCTCTCCAAA+AGG - chr4.1:300412-300431 None:intergenic 60.0%
TCAGTCCAGTGCCATGCCAC+TGG + chr4.1:301083-301102 MS.gene94558:CDS 60.0%
TGTGGCTTCAGGCAGTGCTG+CGG + chr4.1:300998-301017 MS.gene94558:CDS 60.0%
!! GGCCTCCTTGCCTTTTGGAG+AGG + chr4.1:300399-300418 MS.gene94558:CDS 60.0%
!! TTCTAGGGATGGCGGGAGCT+GGG + chr4.1:301882-301901 MS.gene94558:CDS 60.0%
GCTGACCAGTGGCATGGCAC+TGG - chr4.1:301091-301110 None:intergenic 65.0%
GTGGCTTCAGGCAGTGCTGC+GGG + chr4.1:300999-301018 MS.gene94558:CDS 65.0%
!! CTTCTAGGGATGGCGGGAGC+TGG + chr4.1:301881-301900 MS.gene94558:CDS 65.0%
!! TCTAGGGATGGCGGGAGCTG+GGG + chr4.1:301883-301902 MS.gene94558:CDS 65.0%
! CGGGAGCTGGGGTGCTTGCT+GGG + chr4.1:301894-301913 MS.gene94558:CDS 70.0%
! GCGGGAGCTGGGGTGCTTGC+TGG + chr4.1:301893-301912 MS.gene94558:CDS 75.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 300198 301988 300198 ID=MS.gene94558
chr4.1 mRNA 300198 301988 300198 ID=MS.gene94558.t1;Parent=MS.gene94558
chr4.1 exon 300198 300458 300198 ID=MS.gene94558.t1.exon1;Parent=MS.gene94558.t1
chr4.1 CDS 300198 300458 300198 ID=cds.MS.gene94558.t1;Parent=MS.gene94558.t1
chr4.1 exon 300909 301280 300909 ID=MS.gene94558.t1.exon2;Parent=MS.gene94558.t1
chr4.1 CDS 300909 301280 300909 ID=cds.MS.gene94558.t1;Parent=MS.gene94558.t1
chr4.1 exon 301677 301988 301677 ID=MS.gene94558.t1.exon3;Parent=MS.gene94558.t1
chr4.1 CDS 301677 301988 301677 ID=cds.MS.gene94558.t1;Parent=MS.gene94558.t1
Gene Sequence

>MS.gene94558

ATGGTAAAATCAGAATCAGAATCATTTTCAAAGGATTTTGTAATGGGAGGTGCAGCAGCAATCATATCCAAAACTGCAGTGGCACCAATTGAAAGAGTGAAGCTTTTATTACAAAACCAAAGCGAAATGATTAAAAGAGGAAACCTCAAAACACCATACCTTGGTTTGTCTAATACCTTTAAAAGAGTCTTTGCTGAAGAGGGCCTCCTTGCCTTTTGGAGAGGTCACCAGGCCAATGTTATTAGATATTTTCCCACACAGGTGAGGTGATTCTTTGTTATTCATCATAATATATTATTTACCTCATCTTTGAGCTGGTAAATGGATATTATAGCCTATTATACTTGTTTTGTAATGTTTTTGGCAAAATGACATGCTATATGTTGTGAATGCCCGTGTGTTGTAATTAGATCACTAAAAAGTCCAGGTCAAATCTCTCTCCTCTATGGACATTAGTTTAGTTTTTCCCTCAAATAATTCTCAATTTCAATTAAACATACAGAGGTTACCTCACGTATATCAAATTCTCATACAAAATCACTTCCATCGTTTTTACCCCTTGAAAATGTATGACCAGCATCGCTATGTGTTCATTGTCACTTGTATAAAAGAATAACCCGTATTTTGTATTCCAATCAAACCCTGCTCTCAAATAACAGTCTTTTTGCATATTAAAAATAATATTTGAGCAAACAGTTAATTGGTCTATAGGCTTTCAATTTTGCATTCAAAGGTTACTTCAAAAGCATCTTTGGATATTCCAGAGAGAAAGATGGGTACATCAAGTGGTTTGCTGGGAATGTGGCTTCAGGCAGTGCTGCGGGAGCTACTACCTCAATACTTTTGTATCATTTGGACTTTGCACGTACAAGATTGGCCACTGATTCAGTCCAGTGCCATGCCACTGGTCAGCGTCAGTTTAAAGGACTAATTCATGTATATCGTAAAACAATATCAAGTGATGGTGTTGCTGGCTTGTACAGGGGATTCGGTGTTTCAATATTGGGAATCACCATGTATCGAGGAATGTACTTTGGGATATATGACACCATGAAGCCTATTGTTTTAGTTGGACCTTTTGAGGTAAGCATTTATACATTTATAATTACATTACAACATAGATCTATAATTCACAGGCAATGGGAAAATATGGGGTTAATAATTGCTTCTCTTGGCTCAATTTTTTTCGTCTGTTCCATGTTAGGTATGCATGCCAATATTAGAGTTTTTATATTATGCTGCTTATATTGATGGTCGAACCCTTACCTTTAATTTTAACATACATCTTCAAGAGTATGACACATGACAAGTTAGACAACAGTAATTTGGAAAAGTAATTTACTGATTTTTCTCATCATAAACTTTTCCCAGATACATCCCTTGTTGGTATAGCATTTTGATGAATTTATGTCAGAGCATTGGTTCTGTTTATTTATGCCCTTGCATTGGAATACGAGTCTTTTGATTTATATTCTGCAGGGGAACTTCTTTGCTAGTTTCTTGTTAGGTTGGAGCATCACAACTGTATCTGGTGTCTGTGCATATCCTTTTGACACATTACGCCGTCGTATGATGCTAACCTCCGGGCACCAGAATAAGTATTATAATGCAATGCATGCATTCCGTGAGATTGTTGGACAAGAGGGTTTCTTAGCTCTATTTCGAGGAGTCACTGCAAACATGCTTCTAGGGATGGCGGGAGCTGGGGTGCTTGCTGGGTACGATCAGCTAAACCGTATCTCATCTAGACACAGTAACTATAATGAAACGAACCAGAGAGTCATGAAATAA

Protein sequence

>MS.gene94558.t1

MVKSESESFSKDFVMGGAAAIISKTAVAPIERVKLLLQNQSEMIKRGNLKTPYLGLSNTFKRVFAEEGLLAFWRGHQANVIRYFPTQAFNFAFKGYFKSIFGYSREKDGYIKWFAGNVASGSAAGATTSILLYHLDFARTRLATDSVQCHATGQRQFKGLIHVYRKTISSDGVAGLYRGFGVSILGITMYRGMYFGIYDTMKPIVLVGPFEGNFFASFLLGWSITTVSGVCAYPFDTLRRRMMLTSGHQNKYYNAMHAFREIVGQEGFLALFRGVTANMLLGMAGAGVLAGYDQLNRISSRHSNYNETNQRVMK