Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62680.t1 | XP_003630965.1 | 100 | 616 | 0 | 0 | 1 | 616 | 1 | 616 | 0.00E+00 | 1183.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62680.t1 | Q8LF21 | 86.7 | 617 | 78 | 2 | 1 | 616 | 1 | 614 | 2.3e-310 | 1065.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62680.t1 | G7LBF4 | 100.0 | 616 | 0 | 0 | 1 | 616 | 1 | 616 | 0.0e+00 | 1183.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049251 | MS.gene62680 | 0.843636 | 1.24E-58 | -1.69E-46 |
MS.gene049596 | MS.gene62680 | 0.811424 | 7.05E-51 | -1.69E-46 |
MS.gene050297 | MS.gene62680 | 0.816371 | 5.72E-52 | -1.69E-46 |
MS.gene050338 | MS.gene62680 | 0.813979 | 1.95E-51 | -1.69E-46 |
MS.gene050818 | MS.gene62680 | 0.837384 | 5.37E-57 | -1.69E-46 |
MS.gene050894 | MS.gene62680 | 0.845807 | 3.22E-59 | -1.69E-46 |
MS.gene05124 | MS.gene62680 | 0.806544 | 7.81E-50 | -1.69E-46 |
MS.gene052143 | MS.gene62680 | 0.825923 | 3.60E-54 | -1.69E-46 |
MS.gene052367 | MS.gene62680 | 0.821746 | 3.43E-53 | -1.69E-46 |
MS.gene052494 | MS.gene62680 | 0.831575 | 1.54E-55 | -1.69E-46 |
MS.gene053173 | MS.gene62680 | 0.820854 | 5.50E-53 | -1.69E-46 |
MS.gene054551 | MS.gene62680 | 0.801198 | 1.01E-48 | -1.69E-46 |
MS.gene054585 | MS.gene62680 | 0.818473 | 1.92E-52 | -1.69E-46 |
MS.gene055251 | MS.gene62680 | 0.85122 | 1.02E-60 | -1.69E-46 |
MS.gene055729 | MS.gene62680 | 0.810568 | 1.08E-50 | -1.69E-46 |
MS.gene055730 | MS.gene62680 | 0.813271 | 2.78E-51 | -1.69E-46 |
MS.gene055731 | MS.gene62680 | 0.806205 | 9.21E-50 | -1.69E-46 |
MS.gene055748 | MS.gene62680 | -0.806003 | 1.02E-49 | -1.69E-46 |
MS.gene055751 | MS.gene62680 | -0.801885 | 7.29E-49 | -1.69E-46 |
MS.gene056266 | MS.gene62680 | -0.848704 | 5.17E-60 | -1.69E-46 |
MS.gene056526 | MS.gene62680 | 0.830158 | 3.44E-55 | -1.69E-46 |
MS.gene05732 | MS.gene62680 | 0.810935 | 9.00E-51 | -1.69E-46 |
MS.gene058550 | MS.gene62680 | 0.85731 | 1.78E-62 | -1.69E-46 |
MS.gene059304 | MS.gene62680 | 0.825674 | 4.12E-54 | -1.69E-46 |
MS.gene060076 | MS.gene62680 | 0.835191 | 1.94E-56 | -1.69E-46 |
MS.gene060077 | MS.gene62680 | 0.80718 | 5.73E-50 | -1.69E-46 |
MS.gene06093 | MS.gene62680 | 0.802331 | 5.90E-49 | -1.69E-46 |
MS.gene061044 | MS.gene62680 | 0.8413 | 5.17E-58 | -1.69E-46 |
MS.gene061260 | MS.gene62680 | 0.838867 | 2.23E-57 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene62680 | MS.gene064542 | PPI |
MS.gene62680 | MS.gene73119 | PPI |
MS.gene62680 | MS.gene035805 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62680.t1 | MTR_8g105580 | 100.000 | 616 | 0 | 0 | 1 | 616 | 1 | 616 | 0.0 | 1273 |
MS.gene62680.t1 | MTR_8g105580 | 100.000 | 575 | 0 | 0 | 1 | 575 | 1 | 575 | 0.0 | 1189 |
MS.gene62680.t1 | MTR_1g032550 | 88.006 | 617 | 71 | 2 | 1 | 616 | 1 | 615 | 0.0 | 1123 |
MS.gene62680.t1 | MTR_8g009510 | 76.220 | 635 | 131 | 5 | 1 | 615 | 1 | 635 | 0.0 | 983 |
MS.gene62680.t1 | MTR_7g451010 | 78.135 | 622 | 122 | 5 | 1 | 615 | 1 | 615 | 0.0 | 979 |
MS.gene62680.t1 | MTR_4g098920 | 71.707 | 615 | 161 | 4 | 4 | 615 | 1 | 605 | 0.0 | 932 |
MS.gene62680.t1 | MTR_8g099550 | 66.505 | 618 | 191 | 4 | 4 | 615 | 1 | 608 | 0.0 | 890 |
MS.gene62680.t1 | MTR_5g009150 | 66.074 | 619 | 193 | 4 | 4 | 615 | 1 | 609 | 0.0 | 884 |
MS.gene62680.t1 | MTR_8g027675 | 66.450 | 614 | 197 | 3 | 4 | 615 | 1 | 607 | 0.0 | 871 |
MS.gene62680.t1 | MTR_8g009510 | 76.281 | 527 | 111 | 3 | 103 | 615 | 2 | 528 | 0.0 | 822 |
MS.gene62680.t1 | MTR_2g009690 | 38.337 | 493 | 284 | 6 | 5 | 487 | 22 | 504 | 2.92e-97 | 316 |
MS.gene62680.t1 | MTR_4g093750 | 38.134 | 493 | 285 | 6 | 5 | 487 | 13 | 495 | 2.93e-94 | 305 |
MS.gene62680.t1 | MTR_4g093750 | 38.057 | 494 | 286 | 6 | 5 | 487 | 13 | 497 | 3.05e-93 | 303 |
MS.gene62680.t1 | MTR_4g030140 | 31.262 | 515 | 320 | 9 | 1 | 495 | 1 | 501 | 1.38e-66 | 234 |
MS.gene62680.t1 | MTR_4g134680 | 29.746 | 511 | 330 | 9 | 1 | 495 | 1 | 498 | 5.00e-65 | 228 |
MS.gene62680.t1 | MTR_4g134680 | 29.746 | 511 | 330 | 9 | 1 | 495 | 1 | 498 | 2.72e-64 | 227 |
MS.gene62680.t1 | MTR_4g134680 | 29.746 | 511 | 330 | 9 | 1 | 495 | 1 | 498 | 8.86e-64 | 226 |
MS.gene62680.t1 | MTR_4g134680 | 36.869 | 198 | 125 | 0 | 295 | 492 | 1 | 198 | 1.52e-37 | 148 |
MS.gene62680.t1 | MTR_8g087770 | 35.816 | 282 | 162 | 6 | 35 | 310 | 68 | 336 | 1.02e-33 | 137 |
MS.gene62680.t1 | MTR_8g087750 | 35.714 | 294 | 166 | 8 | 35 | 320 | 71 | 349 | 1.57e-33 | 136 |
MS.gene62680.t1 | MTR_8g463270 | 25.698 | 358 | 222 | 9 | 12 | 341 | 31 | 372 | 1.30e-17 | 87.4 |
MS.gene62680.t1 | MTR_4g022340 | 26.552 | 290 | 158 | 9 | 38 | 302 | 32 | 291 | 1.52e-13 | 72.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62680.t1 | AT1G14830 | 87.702 | 618 | 70 | 3 | 1 | 616 | 1 | 614 | 0.0 | 1130 |
MS.gene62680.t1 | AT3G60190 | 77.244 | 624 | 131 | 4 | 1 | 615 | 1 | 622 | 0.0 | 1015 |
MS.gene62680.t1 | AT2G44590 | 74.351 | 616 | 148 | 3 | 4 | 615 | 1 | 610 | 0.0 | 966 |
MS.gene62680.t1 | AT2G44590 | 71.591 | 616 | 148 | 4 | 4 | 615 | 1 | 593 | 0.0 | 922 |
MS.gene62680.t1 | AT2G44590 | 71.475 | 617 | 148 | 5 | 4 | 615 | 1 | 594 | 0.0 | 919 |
MS.gene62680.t1 | AT3G61760 | 66.829 | 615 | 194 | 5 | 4 | 615 | 1 | 608 | 0.0 | 881 |
MS.gene62680.t1 | AT5G42080 | 66.829 | 615 | 194 | 4 | 4 | 615 | 1 | 608 | 0.0 | 879 |
MS.gene62680.t1 | AT5G42080 | 66.829 | 615 | 194 | 4 | 4 | 615 | 1 | 608 | 0.0 | 879 |
MS.gene62680.t1 | AT5G42080 | 66.179 | 615 | 192 | 5 | 4 | 615 | 1 | 602 | 0.0 | 864 |
MS.gene62680.t1 | AT3G61760 | 67.652 | 575 | 176 | 5 | 4 | 575 | 1 | 568 | 0.0 | 830 |
MS.gene62680.t1 | AT3G61760 | 72.297 | 444 | 120 | 3 | 4 | 444 | 1 | 444 | 0.0 | 695 |
MS.gene62680.t1 | AT5G42080 | 73.660 | 429 | 110 | 2 | 4 | 429 | 1 | 429 | 0.0 | 681 |
MS.gene62680.t1 | AT2G14120 | 38.477 | 499 | 281 | 8 | 5 | 487 | 19 | 507 | 1.97e-97 | 314 |
MS.gene62680.t1 | AT2G14120 | 38.477 | 499 | 281 | 8 | 5 | 487 | 19 | 507 | 9.73e-97 | 313 |
MS.gene62680.t1 | AT2G14120 | 38.477 | 499 | 281 | 8 | 5 | 487 | 19 | 507 | 9.83e-97 | 313 |
MS.gene62680.t1 | AT4G33650 | 38.229 | 497 | 284 | 8 | 5 | 487 | 35 | 522 | 4.50e-93 | 304 |
MS.gene62680.t1 | AT4G33650 | 38.229 | 497 | 284 | 8 | 5 | 487 | 35 | 522 | 4.74e-93 | 304 |
MS.gene62680.t1 | AT2G14120 | 36.742 | 528 | 279 | 9 | 5 | 487 | 19 | 536 | 7.89e-93 | 303 |
MS.gene62680.t1 | AT1G10290 | 30.934 | 514 | 320 | 10 | 1 | 495 | 1 | 498 | 6.29e-66 | 232 |
MS.gene62680.t1 | AT1G59610 | 32.558 | 473 | 289 | 10 | 38 | 495 | 41 | 498 | 1.84e-64 | 228 |
MS.gene62680.t1 | AT1G60500 | 24.355 | 620 | 410 | 15 | 35 | 614 | 65 | 665 | 1.98e-40 | 157 |
MS.gene62680.t1 | AT1G60530 | 42.703 | 185 | 105 | 1 | 35 | 219 | 62 | 245 | 4.99e-39 | 145 |
MS.gene62680.t1 | AT1G53140 | 26.741 | 359 | 209 | 11 | 12 | 334 | 47 | 387 | 1.21e-18 | 90.9 |
Find 156 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGACATTTGGCGCATAAAA+TGG | 0.173187 | 4.2:-1418469 | MS.gene62680:CDS |
CGACTCTGTGGCTTGGAAAT+AGG | 0.183632 | 4.2:-1414751 | None:intergenic |
ATCAATTGTCTTGTTTATTA+AGG | 0.199022 | 4.2:+1418240 | None:intergenic |
GGAGCATTCCGGTTTGAATT+TGG | 0.210028 | 4.2:+1416376 | None:intergenic |
TGATACACAGAAGGAGAAAT+TGG | 0.249728 | 4.2:-1414865 | MS.gene62680:intron |
GTGGCGAAGGTTTATCTCTT+TGG | 0.255931 | 4.2:-1422769 | MS.gene62680:CDS |
GGTTACAAAACTTGATCTTA+TGG | 0.260054 | 4.2:-1418780 | MS.gene62680:CDS |
TGCGCCAAATGTCCATATTC+TGG | 0.263377 | 4.2:+1418477 | None:intergenic |
CAACTTCATAAGACCGAAAA+TGG | 0.274604 | 4.2:-1421936 | MS.gene62680:CDS |
TGCACGACACATTTCTAAAA+TGG | 0.282163 | 4.2:+1418051 | None:intergenic |
GATGAAACAGATCGAATAAC+TGG | 0.291503 | 4.2:-1421406 | MS.gene62680:CDS |
TTTGAATTTGGTGGTCCATT+TGG | 0.308876 | 4.2:+1416388 | None:intergenic |
GACTCTGTGGCTTGGAAATA+GGG | 0.314338 | 4.2:-1414750 | None:intergenic |
TGACAATGGACTACGGCTTT+TGG | 0.316072 | 4.2:+1415565 | None:intergenic |
TTTGAGACAAGTCCAGAATA+TGG | 0.316914 | 4.2:-1418489 | MS.gene62680:CDS |
AGGCCGATTGCAGTGGATTC+CGG | 0.317259 | 4.2:-1418187 | MS.gene62680:CDS |
GGCCGATTGCAGTGGATTCC+GGG | 0.320029 | 4.2:-1418186 | MS.gene62680:CDS |
TTGAATTTGGTGGTCCATTT+GGG | 0.329073 | 4.2:+1416389 | None:intergenic |
TCAGTAAAATTATCATTGTT+GGG | 0.334634 | 4.2:+1416352 | None:intergenic |
AGTTACGCGGCTGGTTGATA+TGG | 0.336032 | 4.2:-1416470 | MS.gene62680:CDS |
ATCTAACAGCAGAATTCTTT+AGG | 0.338181 | 4.2:-1416438 | MS.gene62680:CDS |
TTTCTAAAATGGTGTATAGT+TGG | 0.343193 | 4.2:+1418062 | None:intergenic |
CAAGTTCCTTCAAAACAAAA+TGG | 0.346063 | 4.2:+1416970 | None:intergenic |
GCATCCACGGAGGCTTCTGC+TGG | 0.348132 | 4.2:+1417656 | None:intergenic |
GTCAGTAAAATTATCATTGT+TGG | 0.352098 | 4.2:+1416351 | None:intergenic |
TTCTTGAAGGGCGGCAATAC+AGG | 0.352799 | 4.2:-1418608 | MS.gene62680:CDS |
AAGTCGGTGAATCTCTTTCT+TGG | 0.356235 | 4.2:+1421885 | None:intergenic |
AGCATTTGGAGCAAGTTATC+AGG | 0.360469 | 4.2:-1418285 | MS.gene62680:CDS |
AAACTTGATCTTATGGATAA+AGG | 0.363059 | 4.2:-1418773 | MS.gene62680:CDS |
ATTTCAGGTGAAAGAACATT+TGG | 0.368040 | 4.2:-1418806 | MS.gene62680:intron |
TGGCGAAGGTTTATCTCTTT+GGG | 0.372210 | 4.2:-1422768 | MS.gene62680:CDS |
TTCTAAAATGGTGTATAGTT+GGG | 0.382131 | 4.2:+1418063 | None:intergenic |
CCTGGTGGGGACCGGATATA+CGG | 0.382856 | 4.2:-1417854 | MS.gene62680:CDS |
GACTTTCTTCCTCGTGGATC+TGG | 0.386806 | 4.2:-1422668 | MS.gene62680:intron |
GAATAAATGCTGAGTTGAAT+AGG | 0.388151 | 4.2:+1421358 | None:intergenic |
GTAGTTTAGCAATGATCTCT+TGG | 0.401450 | 4.2:+1415531 | None:intergenic |
GCAAAAGAAGTCGATCCTTC+AGG | 0.402730 | 4.2:-1418953 | MS.gene62680:intron |
GAAGAAACTCAGCATATTCC+TGG | 0.407055 | 4.2:+1421913 | None:intergenic |
GTCGTCGGTGGACAGAGTTC+AGG | 0.407717 | 4.2:-1422725 | MS.gene62680:CDS |
TGTTCAAGATATTGAACAAA+TGG | 0.409474 | 4.2:-1420387 | MS.gene62680:CDS |
TGTAAGTGCTTATATCAATA+TGG | 0.415690 | 4.2:-1415614 | MS.gene62680:CDS |
TTTATTAAGGCAATGATACT+AGG | 0.426555 | 4.2:+1418253 | None:intergenic |
GACAATCACCTCCGCAAGAT+TGG | 0.428586 | 4.2:-1416331 | MS.gene62680:intron |
TCTTGCTAGGCTTCTATCTC+AGG | 0.429303 | 4.2:-1418436 | MS.gene62680:intron |
GGATGAAGACCCATCCCTAA+TGG | 0.431010 | 4.2:-1414832 | MS.gene62680:CDS |
CTCAGCATTTATTCTCCAAA+TGG | 0.434296 | 4.2:-1421349 | MS.gene62680:intron |
CTTGTACAATTCAAGCCTCT+TGG | 0.436298 | 4.2:+1414791 | None:intergenic |
TTAACCCTCATAGATCTTCC+TGG | 0.442577 | 4.2:-1420561 | MS.gene62680:CDS |
TTCAGGAAAATCCTCTGTCT+TGG | 0.443738 | 4.2:-1422708 | MS.gene62680:CDS |
GGACATTTGGCGCATAAAAT+GGG | 0.448357 | 4.2:-1418468 | MS.gene62680:CDS |
TCATCTGATTGCTCCAGAGC+AGG | 0.454372 | 4.2:-1417723 | MS.gene62680:CDS |
TCTGTCTTGGAAAGTGTTGT+TGG | 0.456396 | 4.2:-1422695 | MS.gene62680:CDS |
ATCTTGATTGGCGGGAGAGA+TGG | 0.457501 | 4.2:+1419003 | None:intergenic |
TTATGTTCAAGTTGGAAAGA+AGG | 0.468501 | 4.2:-1415506 | MS.gene62680:CDS |
AAGTCCAGAATATGGACATT+TGG | 0.470149 | 4.2:-1418481 | MS.gene62680:CDS |
ACCCCGGAATCCACTGCAAT+CGG | 0.472822 | 4.2:+1418184 | None:intergenic |
TGAAGTGGCAATATCTTGAT+TGG | 0.475261 | 4.2:+1418991 | None:intergenic |
CTGTCTTCTTGCTTTCGTCT+CGG | 0.478922 | 4.2:+1416491 | None:intergenic |
TTAGGTGATCACGGTGGCGA+AGG | 0.483199 | 4.2:-1422782 | MS.gene62680:CDS |
GCGAAAATGAAGGTTCTTGA+AGG | 0.491969 | 4.2:-1418621 | MS.gene62680:intron |
CTTCCTTCCGTCGCCGTCGT+CGG | 0.492244 | 4.2:-1422740 | MS.gene62680:CDS |
AAGGAAAGATGGCGATCAAA+GGG | 0.493239 | 4.2:+1417791 | None:intergenic |
GCATTCCGGTTTGAATTTGG+TGG | 0.498132 | 4.2:+1416379 | None:intergenic |
CAGAGTTAGACCGCATTGGC+AGG | 0.501137 | 4.2:-1418207 | MS.gene62680:CDS |
AATACAGGCTGCAGCATCCA+TGG | 0.504183 | 4.2:-1418593 | MS.gene62680:CDS |
GAACCAGAAAAGAACCCAAA+TGG | 0.505929 | 4.2:-1416403 | MS.gene62680:CDS |
TCAGACGTCCTGGTGGGGAC+CGG | 0.509636 | 4.2:-1417862 | MS.gene62680:intron |
CAGTAAAATTATCATTGTTG+GGG | 0.514716 | 4.2:+1416353 | None:intergenic |
AGTCTTCTATAACCCTGCTC+TGG | 0.517134 | 4.2:+1417710 | None:intergenic |
AACTTCTATTTCAGACGTCC+TGG | 0.519751 | 4.2:-1417872 | MS.gene62680:intron |
CAAGAAGACAGTTACGCGGC+TGG | 0.521076 | 4.2:-1416479 | MS.gene62680:CDS |
CCGTATATCCGGTCCCCACC+AGG | 0.521654 | 4.2:+1417854 | None:intergenic |
TAAGGAAAGATGGCGATCAA+AGG | 0.525558 | 4.2:+1417790 | None:intergenic |
CATCCACGGAGGCTTCTGCT+GGG | 0.526525 | 4.2:+1417657 | None:intergenic |
GGAAGAGACTTTCTTCCTCG+TGG | 0.528185 | 4.2:-1422674 | MS.gene62680:CDS |
ATGGACCACCAAATTCAAAC+CGG | 0.530820 | 4.2:-1416384 | MS.gene62680:CDS |
GATACACAGAAGGAGAAATT+GGG | 0.530963 | 4.2:-1414864 | MS.gene62680:intron |
AAAGTTGTCACTGAAGCTGA+TGG | 0.531731 | 4.2:-1417755 | MS.gene62680:CDS |
GTGGCAATATCTTGATTGGC+GGG | 0.532340 | 4.2:+1418995 | None:intergenic |
CATTGGCAGGCCGATTGCAG+TGG | 0.533531 | 4.2:-1418194 | MS.gene62680:CDS |
CTGCAATCGGCCTGCCAATG+CGG | 0.540716 | 4.2:+1418197 | None:intergenic |
AGAAAGAGATTCACCGACTT+CGG | 0.540723 | 4.2:-1421882 | MS.gene62680:intron |
TCAGCCCAGGAAGATCTATG+AGG | 0.540894 | 4.2:+1420556 | None:intergenic |
GCGACGATGACGAGCTTGAT+CGG | 0.541831 | 4.2:-1422839 | MS.gene62680:CDS |
ACGATATCGACTCTGTGGCT+TGG | 0.542824 | 4.2:-1414758 | MS.gene62680:CDS |
AGGCTGCAGCATCCATGGGT+TGG | 0.551004 | 4.2:-1418588 | MS.gene62680:CDS |
TGGGATCAGAATATCTTGCT+AGG | 0.551156 | 4.2:-1418449 | MS.gene62680:CDS |
GGAGAAATTGGGTGCCATGT+TGG | 0.551512 | 4.2:-1414853 | MS.gene62680:CDS |
CCTTCCGTCGCCGTCGTCGG+TGG | 0.552612 | 4.2:-1422737 | MS.gene62680:CDS |
GAAACTTCAGTTACCGAAGT+CGG | 0.553424 | 4.2:+1421869 | None:intergenic |
TGTTCAAGTTGGAAAGAAGG+AGG | 0.554198 | 4.2:-1415503 | MS.gene62680:intron |
ACCGCACTTACCCTCCATCC+AGG | 0.555227 | 4.2:+1418005 | None:intergenic |
TCATAAGACCGAAAATGGCC+AGG | 0.558470 | 4.2:-1421931 | MS.gene62680:CDS |
GCCACCGTGATCACCTAAAA+CGG | 0.560290 | 4.2:+1422787 | None:intergenic |
GGTTATAGAAGACTCATTGA+AGG | 0.563512 | 4.2:-1417701 | MS.gene62680:CDS |
TATTGTTACGCGGAGGCCGC+TGG | 0.566066 | 4.2:-1421964 | MS.gene62680:CDS |
TTTAAAGAGCACCTGGATGG+AGG | 0.566959 | 4.2:-1418016 | MS.gene62680:CDS |
TATTAATATCAGCTTGTGAA+CGG | 0.567091 | 4.2:+1418556 | None:intergenic |
TAAAGTATTTAAAGAGCACC+TGG | 0.567215 | 4.2:-1418023 | MS.gene62680:CDS |
CGAAAATGAAGGTTCTTGAA+GGG | 0.572722 | 4.2:-1418620 | MS.gene62680:intron |
CATGATTGTTGCTCGAAGGA+AGG | 0.574494 | 4.2:-1418523 | MS.gene62680:CDS |
TCTAACTTGACAATGGACTA+CGG | 0.575000 | 4.2:+1415558 | None:intergenic |
CTAAAACGGTACAAGCTCGT+TGG | 0.575495 | 4.2:+1422801 | None:intergenic |
GGTCCGTTCGTATGTTGAGA+AGG | 0.575952 | 4.2:-1420366 | MS.gene62680:intron |
TAACCCTCATAGATCTTCCT+GGG | 0.576713 | 4.2:-1420560 | MS.gene62680:CDS |
GCAATGTCATTTGAAAGCGT+TGG | 0.577613 | 4.2:+1416544 | None:intergenic |
TGGCTTCTCTAACTTGACAA+TGG | 0.578361 | 4.2:+1415551 | None:intergenic |
AATGCAGAGTTAGACCGCAT+TGG | 0.578744 | 4.2:-1418211 | MS.gene62680:CDS |
CGGTTCACAATTCCAACCCA+TGG | 0.581424 | 4.2:+1418576 | None:intergenic |
CCACCGACGACGGCGACGGA+AGG | 0.582483 | 4.2:+1422737 | None:intergenic |
CCATGCAGCTGCTGTGAGGA+AGG | 0.584586 | 4.2:-1421437 | MS.gene62680:intron |
ATCCAGTGCTTCATTTGCAG+CGG | 0.584720 | 4.2:+1416519 | None:intergenic |
ATGGCTAAGATAATGCAGTT+CGG | 0.585285 | 4.2:+1419022 | None:intergenic |
AGTGGCAATATCTTGATTGG+CGG | 0.585927 | 4.2:+1418994 | None:intergenic |
CTATTTCAGACGTCCTGGTG+GGG | 0.587055 | 4.2:-1417867 | MS.gene62680:intron |
CTGTCCACCGACGACGGCGA+CGG | 0.587559 | 4.2:+1422733 | None:intergenic |
TTCTATTTCAGACGTCCTGG+TGG | 0.588961 | 4.2:-1417869 | MS.gene62680:intron |
CATCTGATTGCTCCAGAGCA+GGG | 0.591556 | 4.2:-1417722 | MS.gene62680:CDS |
AGATCTTCCTGGGCTGACAA+AGG | 0.592661 | 4.2:-1420550 | MS.gene62680:CDS |
TTAAAGAGCACCTGGATGGA+GGG | 0.592992 | 4.2:-1418015 | MS.gene62680:intron |
CAAGAAGATTACAGCATCCA+CGG | 0.593135 | 4.2:+1417643 | None:intergenic |
AACCGCTGCAAATGAAGCAC+TGG | 0.596471 | 4.2:-1416521 | MS.gene62680:CDS |
AGTAAAATTATCATTGTTGG+GGG | 0.597465 | 4.2:+1416354 | None:intergenic |
GCCGATTGCAGTGGATTCCG+GGG | 0.599749 | 4.2:-1418185 | MS.gene62680:intron |
ACTGCAACCTTTGTCAGCCC+AGG | 0.602242 | 4.2:+1420543 | None:intergenic |
GTATTTAAAGAGCACCTGGA+TGG | 0.604835 | 4.2:-1418019 | MS.gene62680:CDS |
TCTATTTCAGACGTCCTGGT+GGG | 0.606106 | 4.2:-1417868 | MS.gene62680:intron |
GGGCTGACAAAGGTTGCAGT+AGG | 0.607376 | 4.2:-1420540 | MS.gene62680:intron |
AACAACACTTTCCAAGACAG+AGG | 0.607579 | 4.2:+1422697 | None:intergenic |
TGCTCTGGAGCAATCAGATG+AGG | 0.607841 | 4.2:+1417725 | None:intergenic |
GTTATAGAAGACTCATTGAA+GGG | 0.609274 | 4.2:-1417700 | MS.gene62680:CDS |
ATACAGGCTGCAGCATCCAT+GGG | 0.610950 | 4.2:-1418592 | MS.gene62680:CDS |
GGGTCTATCAGCTATTTCAA+AGG | 0.611791 | 4.2:-1417680 | MS.gene62680:CDS |
AAGTTGTCACTGAAGCTGAT+GGG | 0.616414 | 4.2:-1417754 | MS.gene62680:CDS |
CAGCCCAGGAAGATCTATGA+GGG | 0.621732 | 4.2:+1420557 | None:intergenic |
AAAATTACGTACCAATCTTG+CGG | 0.622307 | 4.2:+1416320 | None:intergenic |
AGGTGAAAGAACATTTGGAG+TGG | 0.629893 | 4.2:-1418801 | MS.gene62680:CDS |
TCGACATGATTGTTGCTCGA+AGG | 0.630142 | 4.2:-1418527 | MS.gene62680:CDS |
AGGCCCAGCAGAAGCCTCCG+TGG | 0.632406 | 4.2:-1417660 | MS.gene62680:CDS |
TTACCTTCTCAACATACGAA+CGG | 0.640976 | 4.2:+1420363 | None:intergenic |
GGATGGGTCTTCATCCAACA+TGG | 0.649372 | 4.2:+1414839 | None:intergenic |
AGAGAAATCAAATAGCCAAG+AGG | 0.661464 | 4.2:-1414806 | MS.gene62680:CDS |
TTATGAAGTTGCAGTACCAG+CGG | 0.662429 | 4.2:+1421948 | None:intergenic |
ATGAAACAGATCGAATAACT+GGG | 0.663724 | 4.2:-1421405 | MS.gene62680:CDS |
TAAGTCAATTGCAGAAACAG+AGG | 0.664329 | 4.2:-1416943 | MS.gene62680:intron |
ATTTACAAGGTATTGTTACG+CGG | 0.666912 | 4.2:-1421974 | MS.gene62680:intron |
GTAAAATTATCATTGTTGGG+GGG | 0.668430 | 4.2:+1416355 | None:intergenic |
AAATGAAGGTTCTTGAAGGG+CGG | 0.668784 | 4.2:-1418617 | MS.gene62680:intron |
TACAAGGTATTGTTACGCGG+AGG | 0.681922 | 4.2:-1421971 | MS.gene62680:intron |
TGAACTCTGTCCACCGACGA+CGG | 0.684385 | 4.2:+1422727 | None:intergenic |
ATTACGTACCAATCTTGCGG+AGG | 0.697717 | 4.2:+1416323 | None:intergenic |
TAGAGACGATATCGACTCTG+TGG | 0.698748 | 4.2:-1414763 | MS.gene62680:CDS |
ATGCCCATGCAGCTGCTGTG+AGG | 0.716543 | 4.2:-1421441 | MS.gene62680:intron |
GAAGATTACAGCATCCACGG+AGG | 0.775671 | 4.2:+1417646 | None:intergenic |
AAAGCAAGAAGACAGTTACG+CGG | 0.786445 | 4.2:-1416483 | MS.gene62680:CDS |
AAATGAATACCAGATCCACG+AGG | 0.806447 | 4.2:+1422659 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 1414752 | 1422864 | 1414752 | ID=MS.gene62680 |
chr4.2 | mRNA | 1414752 | 1422864 | 1414752 | ID=MS.gene62680.t1;Parent=MS.gene62680 |
chr4.2 | exon | 1422669 | 1422864 | 1422669 | ID=MS.gene62680.t1.exon1;Parent=MS.gene62680.t1 |
chr4.2 | CDS | 1422669 | 1422864 | 1422669 | ID=cds.MS.gene62680.t1;Parent=MS.gene62680.t1 |
chr4.2 | exon | 1421883 | 1421987 | 1421883 | ID=MS.gene62680.t1.exon2;Parent=MS.gene62680.t1 |
chr4.2 | CDS | 1421883 | 1421987 | 1421883 | ID=cds.MS.gene62680.t1;Parent=MS.gene62680.t1 |
chr4.2 | exon | 1421350 | 1421451 | 1421350 | ID=MS.gene62680.t1.exon3;Parent=MS.gene62680.t1 |
chr4.2 | CDS | 1421350 | 1421451 | 1421350 | ID=cds.MS.gene62680.t1;Parent=MS.gene62680.t1 |
chr4.2 | exon | 1420541 | 1420591 | 1420541 | ID=MS.gene62680.t1.exon4;Parent=MS.gene62680.t1 |
chr4.2 | CDS | 1420541 | 1420591 | 1420541 | ID=cds.MS.gene62680.t1;Parent=MS.gene62680.t1 |
chr4.2 | exon | 1420367 | 1420428 | 1420367 | ID=MS.gene62680.t1.exon5;Parent=MS.gene62680.t1 |
chr4.2 | CDS | 1420367 | 1420428 | 1420367 | ID=cds.MS.gene62680.t1;Parent=MS.gene62680.t1 |
chr4.2 | exon | 1418954 | 1419044 | 1418954 | ID=MS.gene62680.t1.exon6;Parent=MS.gene62680.t1 |
chr4.2 | CDS | 1418954 | 1419044 | 1418954 | ID=cds.MS.gene62680.t1;Parent=MS.gene62680.t1 |
chr4.2 | exon | 1418757 | 1418821 | 1418757 | ID=MS.gene62680.t1.exon7;Parent=MS.gene62680.t1 |
chr4.2 | CDS | 1418757 | 1418821 | 1418757 | ID=cds.MS.gene62680.t1;Parent=MS.gene62680.t1 |
chr4.2 | exon | 1418437 | 1418631 | 1418437 | ID=MS.gene62680.t1.exon8;Parent=MS.gene62680.t1 |
chr4.2 | CDS | 1418437 | 1418631 | 1418437 | ID=cds.MS.gene62680.t1;Parent=MS.gene62680.t1 |
chr4.2 | exon | 1418186 | 1418305 | 1418186 | ID=MS.gene62680.t1.exon9;Parent=MS.gene62680.t1 |
chr4.2 | CDS | 1418186 | 1418305 | 1418186 | ID=cds.MS.gene62680.t1;Parent=MS.gene62680.t1 |
chr4.2 | exon | 1418016 | 1418086 | 1418016 | ID=MS.gene62680.t1.exon10;Parent=MS.gene62680.t1 |
chr4.2 | CDS | 1418016 | 1418086 | 1418016 | ID=cds.MS.gene62680.t1;Parent=MS.gene62680.t1 |
chr4.2 | exon | 1417655 | 1417880 | 1417655 | ID=MS.gene62680.t1.exon11;Parent=MS.gene62680.t1 |
chr4.2 | CDS | 1417655 | 1417880 | 1417655 | ID=cds.MS.gene62680.t1;Parent=MS.gene62680.t1 |
chr4.2 | exon | 1416944 | 1416994 | 1416944 | ID=MS.gene62680.t1.exon12;Parent=MS.gene62680.t1 |
chr4.2 | CDS | 1416944 | 1416994 | 1416944 | ID=cds.MS.gene62680.t1;Parent=MS.gene62680.t1 |
chr4.2 | exon | 1416332 | 1416581 | 1416332 | ID=MS.gene62680.t1.exon13;Parent=MS.gene62680.t1 |
chr4.2 | CDS | 1416332 | 1416581 | 1416332 | ID=cds.MS.gene62680.t1;Parent=MS.gene62680.t1 |
chr4.2 | exon | 1415504 | 1415643 | 1415504 | ID=MS.gene62680.t1.exon14;Parent=MS.gene62680.t1 |
chr4.2 | CDS | 1415504 | 1415643 | 1415504 | ID=cds.MS.gene62680.t1;Parent=MS.gene62680.t1 |
chr4.2 | exon | 1414752 | 1414877 | 1414752 | ID=MS.gene62680.t1.exon15;Parent=MS.gene62680.t1 |
chr4.2 | CDS | 1414752 | 1414877 | 1414752 | ID=cds.MS.gene62680.t1;Parent=MS.gene62680.t1 |
Gene Sequence |
Protein sequence |