Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62982.t1 | AES59867.2 | 94.8 | 945 | 27 | 1 | 1 | 945 | 62 | 984 | 0.00E+00 | 1781.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62982.t1 | F4INA9 | 59.0 | 956 | 348 | 9 | 3 | 945 | 49 | 973 | 0.0e+00 | 1094.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62982.t1 | G7I947 | 94.8 | 945 | 27 | 1 | 1 | 945 | 62 | 984 | 0.0e+00 | 1781.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene62982 | 0.804515 | 2.08E-49 | -1.69E-46 |
| MS.gene052164 | MS.gene62982 | 0.829303 | 5.55E-55 | -1.69E-46 |
| MS.gene052482 | MS.gene62982 | 0.820025 | 8.53E-53 | -1.69E-46 |
| MS.gene052486 | MS.gene62982 | 0.826742 | 2.30E-54 | -1.69E-46 |
| MS.gene052503 | MS.gene62982 | 0.803737 | 3.02E-49 | -1.69E-46 |
| MS.gene052823 | MS.gene62982 | 0.812277 | 4.60E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene62982 | 0.811599 | 6.46E-51 | -1.69E-46 |
| MS.gene053203 | MS.gene62982 | 0.810162 | 1.32E-50 | -1.69E-46 |
| MS.gene053436 | MS.gene62982 | 0.800947 | 1.13E-48 | -1.69E-46 |
| MS.gene053549 | MS.gene62982 | -0.807003 | 6.25E-50 | -1.69E-46 |
| MS.gene056040 | MS.gene62982 | 0.803055 | 4.18E-49 | -1.69E-46 |
| MS.gene056310 | MS.gene62982 | -0.806264 | 8.95E-50 | -1.69E-46 |
| MS.gene056311 | MS.gene62982 | -0.800282 | 1.55E-48 | -1.69E-46 |
| MS.gene056504 | MS.gene62982 | 0.803481 | 3.42E-49 | -1.69E-46 |
| MS.gene056878 | MS.gene62982 | 0.831945 | 1.25E-55 | -1.69E-46 |
| MS.gene05726 | MS.gene62982 | -0.821272 | 4.41E-53 | -1.69E-46 |
| MS.gene059837 | MS.gene62982 | 0.817273 | 3.59E-52 | -1.69E-46 |
| MS.gene05996 | MS.gene62982 | 0.804895 | 1.73E-49 | -1.69E-46 |
| MS.gene060187 | MS.gene62982 | -0.801466 | 8.89E-49 | -1.69E-46 |
| MS.gene060595 | MS.gene62982 | -0.828935 | 6.82E-55 | -1.69E-46 |
| MS.gene060778 | MS.gene62982 | 0.809057 | 2.28E-50 | -1.69E-46 |
| MS.gene06077 | MS.gene62982 | 0.835357 | 1.76E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62982.t1 | MTR_1g031140 | 94.815 | 945 | 27 | 1 | 1 | 945 | 62 | 984 | 0.0 | 1841 |
| MS.gene62982.t1 | MTR_3g079900 | 94.845 | 388 | 20 | 0 | 548 | 935 | 1 | 388 | 0.0 | 753 |
| MS.gene62982.t1 | MTR_3g079915 | 97.163 | 141 | 4 | 0 | 334 | 474 | 1 | 141 | 7.75e-91 | 286 |
| MS.gene62982.t1 | MTR_3g079925 | 75.269 | 186 | 23 | 2 | 1 | 186 | 1 | 163 | 1.83e-85 | 272 |
| MS.gene62982.t1 | MTR_3g079925 | 75.269 | 186 | 23 | 2 | 1 | 186 | 14 | 176 | 3.40e-85 | 271 |
| MS.gene62982.t1 | MTR_7g084560 | 33.902 | 410 | 223 | 8 | 490 | 890 | 267 | 637 | 6.11e-59 | 217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62982.t1 | AT2G01440 | 59.205 | 956 | 350 | 10 | 1 | 945 | 47 | 973 | 0.0 | 1117 |
| MS.gene62982.t1 | AT3G02060 | 33.784 | 444 | 245 | 9 | 490 | 924 | 265 | 668 | 9.89e-62 | 225 |
| MS.gene62982.t1 | AT3G02060 | 33.784 | 444 | 245 | 9 | 490 | 924 | 266 | 669 | 1.06e-61 | 225 |
| MS.gene62982.t1 | AT3G02060 | 33.784 | 444 | 245 | 9 | 490 | 924 | 266 | 669 | 1.06e-61 | 225 |
Find 235 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTGTTTCAGAAATTATT+TGG | 0.134771 | 1.3:-16655423 | MS.gene62982:CDS |
| GGCCCCTGAGTTGGTGTAAT+TGG | 0.159367 | 1.3:+16643913 | None:intergenic |
| ACTTGTTCGCAATACTATTT+AGG | 0.171715 | 1.3:+16659515 | None:intergenic |
| TGCTCTGAAAGTTCGATAAT+TGG | 0.181246 | 1.3:+16644173 | None:intergenic |
| CTTGCAGGTATTTGCTCTTA+TGG | 0.204641 | 1.3:-16661278 | MS.gene62982:intron |
| ACCCTTGCGCTTGCTTTATA+TGG | 0.228107 | 1.3:-16646698 | MS.gene62982:CDS |
| GCCACTCAAGTAATTGAAAT+TGG | 0.233843 | 1.3:-16643996 | MS.gene62982:CDS |
| AATTCCTCTCTAATGTCTTT+AGG | 0.250188 | 1.3:+16656723 | None:intergenic |
| CATAACATCCCTGATCTAAT+TGG | 0.250534 | 1.3:-16661253 | MS.gene62982:CDS |
| AAATTATTTGGGATTTAAAA+AGG | 0.251974 | 1.3:-16655411 | MS.gene62982:CDS |
| CTTGCATGCATGGAAGTTAT+TGG | 0.252844 | 1.3:-16654834 | MS.gene62982:CDS |
| AAAGACATTAGAGAGGAATT+TGG | 0.258509 | 1.3:-16656720 | MS.gene62982:CDS |
| TAAATGTTGTTCAAAATCTT+TGG | 0.281915 | 1.3:+16661060 | None:intergenic |
| TCTCTAATGTCTTTAGGAAT+TGG | 0.285234 | 1.3:+16656729 | None:intergenic |
| TGGGTTTCATCTTGCTAATA+TGG | 0.287027 | 1.3:-16643796 | MS.gene62982:CDS |
| GCAATTTCCTGCACTTAAAC+TGG | 0.298836 | 1.3:-16642966 | MS.gene62982:CDS |
| CTCAAAGACTGATGATTATA+TGG | 0.304409 | 1.3:-16646762 | MS.gene62982:CDS |
| TGCAGACAGCGTTGAATTCT+CGG | 0.309005 | 1.3:-16648175 | MS.gene62982:CDS |
| TCGACTTCCAATCTGGTAAT+AGG | 0.310055 | 1.3:+16643708 | None:intergenic |
| AAGAAACGTTAGGGAAGTTT+AGG | 0.311725 | 1.3:-16644043 | MS.gene62982:CDS |
| GTTATCTCAGACCGGTTTCC+AGG | 0.312908 | 1.3:-16644113 | MS.gene62982:CDS |
| TACCAAGACCTTCGAGCATT+TGG | 0.317152 | 1.3:+16655581 | None:intergenic |
| GACATTGATTGAGGTGTTAC+AGG | 0.320229 | 1.3:+16660917 | None:intergenic |
| GGTCTATTTCAACAACCTTC+TGG | 0.326080 | 1.3:+16662418 | None:intergenic |
| TAAATCTTCAATTTCGAGTC+TGG | 0.326921 | 1.3:-16646807 | MS.gene62982:CDS |
| TCCAATGAATCGGCTACTTC+AGG | 0.327507 | 1.3:-16655383 | MS.gene62982:intron |
| CTGTCTCACCAAGAAGGTTT+TGG | 0.334829 | 1.3:-16655482 | MS.gene62982:CDS |
| TTCTGAAACAAATATCATTT+CGG | 0.340676 | 1.3:-16661086 | MS.gene62982:CDS |
| GATATTTCCATCAATTACTT+TGG | 0.341300 | 1.3:-16661152 | MS.gene62982:CDS |
| AGTTATTGGCTCTGGCTATC+AGG | 0.346529 | 1.3:-16654820 | MS.gene62982:intron |
| TTTGAAGGGTAGATACAATA+TGG | 0.347129 | 1.3:+16657841 | None:intergenic |
| AAGGAGCTCCAAAACCTTCT+TGG | 0.359567 | 1.3:+16655474 | None:intergenic |
| GCTTGCGTTGCTTGAAAACT+TGG | 0.369982 | 1.3:-16648423 | MS.gene62982:CDS |
| ATCAAATATAAGTCTCTTGC+GGG | 0.371310 | 1.3:+16656314 | None:intergenic |
| TTGGAGAAGTCTTATCTTCA+AGG | 0.382863 | 1.3:-16660518 | MS.gene62982:intron |
| TAGCATATGATCGTGGAAAA+TGG | 0.383067 | 1.3:+16660592 | None:intergenic |
| GGTGAAGATGTTAAACTAGA+AGG | 0.386289 | 1.3:+16660968 | None:intergenic |
| CTTCCATTTCCAATTAGATC+AGG | 0.386903 | 1.3:+16661244 | None:intergenic |
| GAAATAACTCATTAAGTGTA+AGG | 0.387662 | 1.3:+16660816 | None:intergenic |
| TGACCGGAAGTAAGAGTATA+GGG | 0.389140 | 1.3:+16655451 | None:intergenic |
| GGATATTAGTGAAGCTGATC+TGG | 0.391300 | 1.3:-16656337 | MS.gene62982:CDS |
| CGATTGAAATTTCTCCGGTC+TGG | 0.391448 | 1.3:+16648220 | None:intergenic |
| ATCCCTGATCTAATTGGAAA+TGG | 0.392081 | 1.3:-16661247 | MS.gene62982:CDS |
| TAACTATTAGGCGGCTTTCA+TGG | 0.392532 | 1.3:-16648486 | MS.gene62982:intron |
| GTTTGAACCCAACATTCCTT+CGG | 0.393103 | 1.3:-16657813 | MS.gene62982:CDS |
| AAAGCAAGCGCAAGGGTCCT+TGG | 0.393595 | 1.3:+16646704 | None:intergenic |
| CGAGTTTCCTATTACCAGAT+TGG | 0.393606 | 1.3:-16643715 | MS.gene62982:CDS |
| AGCTGTTTCAGAAATTATTT+GGG | 0.398821 | 1.3:-16655422 | MS.gene62982:CDS |
| GCCCCTGAGTTGGTGTAATT+GGG | 0.399144 | 1.3:+16643914 | None:intergenic |
| TCAGCTTCACTAATATCCTT+TGG | 0.401300 | 1.3:+16656342 | None:intergenic |
| CAAGCAAGTGTTTATAATGC+TGG | 0.403142 | 1.3:+16648441 | None:intergenic |
| GGAGAAATTTCAATCGTCAT+TGG | 0.404798 | 1.3:-16648213 | MS.gene62982:CDS |
| CATATAATCATCAGTCTTTG+AGG | 0.409324 | 1.3:+16646763 | None:intergenic |
| GTTTGAACAGGAATCCTTCC+TGG | 0.409760 | 1.3:+16645037 | None:intergenic |
| ACCTGAAGTAGCCGATTCAT+TGG | 0.412932 | 1.3:+16655382 | None:intergenic |
| TTTGAACCCAACATTCCTTC+GGG | 0.416108 | 1.3:-16657812 | MS.gene62982:CDS |
| ATATAAAATTGTCACCTTGT+AGG | 0.418463 | 1.3:+16644976 | None:intergenic |
| CCTTCATCGTTTGAAAGTAC+TGG | 0.419728 | 1.3:-16643832 | MS.gene62982:CDS |
| ATCAATGTCTTCAATATATG+AGG | 0.420240 | 1.3:-16660903 | MS.gene62982:CDS |
| CAGGAAATTGCTCCAGATCA+TGG | 0.427300 | 1.3:+16642978 | None:intergenic |
| CACCAGGTCCACGTAATAAT+AGG | 0.429367 | 1.3:+16643772 | None:intergenic |
| CTTAAGTGCTTCCCATGATC+TGG | 0.430962 | 1.3:-16642990 | MS.gene62982:CDS |
| CGTTGCTTCTTAGTTAATCC+AGG | 0.431264 | 1.3:+16660770 | None:intergenic |
| ATATTTCCATCAATTACTTT+GGG | 0.431693 | 1.3:-16661151 | MS.gene62982:CDS |
| TTCCAAATGCTCGAAGGTCT+TGG | 0.432542 | 1.3:-16655583 | MS.gene62982:CDS |
| CATGCTCAATATCCGATTCC+CGG | 0.435529 | 1.3:+16659623 | None:intergenic |
| ACATCTGTCAATTGCTTACC+TGG | 0.436492 | 1.3:-16660788 | MS.gene62982:CDS |
| CTCAAGTGGGTTTGTATGAT+GGG | 0.437453 | 1.3:-16661120 | MS.gene62982:CDS |
| GGGCAGTATTTGATGTTTGT+TGG | 0.441166 | 1.3:-16660537 | MS.gene62982:CDS |
| TATTGTATCTACCCTTCAAA+AGG | 0.443035 | 1.3:-16657838 | MS.gene62982:CDS |
| TGATGGATGAGTTGGAAGAT+GGG | 0.443050 | 1.3:-16644217 | MS.gene62982:CDS |
| AATATTGACGTGCTTGAAGA+TGG | 0.443110 | 1.3:-16657895 | MS.gene62982:CDS |
| CCTCAAGTGGGTTTGTATGA+TGG | 0.443194 | 1.3:-16661121 | MS.gene62982:CDS |
| AGCATGTAACCGACAAAGTT+GGG | 0.443905 | 1.3:-16659606 | MS.gene62982:CDS |
| ACAACCATCATCGATGCATC+TGG | 0.444936 | 1.3:+16643963 | None:intergenic |
| ATCTCGTAGTGATCTTTAGT+AGG | 0.446993 | 1.3:+16657928 | None:intergenic |
| GCTCTGAAAGTTCGATAATT+GGG | 0.448698 | 1.3:+16644174 | None:intergenic |
| AGACAGCCGCTTTGCCTGCT+AGG | 0.450136 | 1.3:-16642932 | MS.gene62982:CDS |
| CTTCCCTATACTCTTACTTC+CGG | 0.450519 | 1.3:-16655454 | MS.gene62982:CDS |
| CTGTAAATTTATGCTTCATC+CGG | 0.455705 | 1.3:+16662442 | None:intergenic |
| TACAATTGTGGTTTATTACA+TGG | 0.458064 | 1.3:-16644089 | MS.gene62982:CDS |
| CACAATTGTATCCTGGAAAC+CGG | 0.460527 | 1.3:+16644102 | None:intergenic |
| TTGCTTGGCAAGAAACAATC+TGG | 0.461165 | 1.3:-16643747 | MS.gene62982:CDS |
| ATGATGGATGAGTTGGAAGA+TGG | 0.462197 | 1.3:-16644218 | MS.gene62982:CDS |
| GCACTACCCAAAGTAATTGA+TGG | 0.462197 | 1.3:+16661145 | None:intergenic |
| GTCCAACTCGGCCCCTGAGT+TGG | 0.463318 | 1.3:+16643904 | None:intergenic |
| CAAAACCTTCTTGGTGAGAC+AGG | 0.464022 | 1.3:+16655483 | None:intergenic |
| AAGAGGAAGATTTAACAGTA+AGG | 0.469294 | 1.3:-16648103 | MS.gene62982:intron |
| TTGACCGGAAGTAAGAGTAT+AGG | 0.470071 | 1.3:+16655450 | None:intergenic |
| TCGATGGTATATGTTTGAAC+AGG | 0.470456 | 1.3:+16645025 | None:intergenic |
| TGCATGGAAGTTATTGGCTC+TGG | 0.472938 | 1.3:-16654828 | MS.gene62982:CDS |
| TGATGTCCCGAAGGAATGTT+GGG | 0.475017 | 1.3:+16657806 | None:intergenic |
| TCAGATTGCAGACCGGGAAT+CGG | 0.476393 | 1.3:-16659635 | MS.gene62982:CDS |
| ATTGCCGTCGACTTCCAATC+TGG | 0.478317 | 1.3:+16643701 | None:intergenic |
| ATTGTATCTACCCTTCAAAA+GGG | 0.481958 | 1.3:-16657837 | MS.gene62982:CDS |
| CCAACTGTTGCTTTACTCAC+TGG | 0.482345 | 1.3:-16648383 | MS.gene62982:CDS |
| AAGCAAGCGCAAGGGTCCTT+GGG | 0.483118 | 1.3:+16646705 | None:intergenic |
| CGTGGACCTGGTGACTTGCT+TGG | 0.483435 | 1.3:-16643762 | MS.gene62982:CDS |
| TGGCCTCTCTTTAGCGCAAA+GGG | 0.484083 | 1.3:+16657861 | None:intergenic |
| CACTGTAAAGCTGCGTAAGA+AGG | 0.484338 | 1.3:-16662379 | MS.gene62982:intron |
| TCTTGGTACACAAGTAGAAA+AGG | 0.485150 | 1.3:-16655566 | MS.gene62982:CDS |
| CAGTGCTCTTTACACCGTGC+TGG | 0.485276 | 1.3:+16662397 | None:intergenic |
| AGCGCAAGGGTCCTTGGGAT+GGG | 0.485659 | 1.3:+16646710 | None:intergenic |
| CAATCTGGTAATAGGAAACT+CGG | 0.485660 | 1.3:+16643716 | None:intergenic |
| AAGCGCAAGGGTCCTTGGGA+TGG | 0.488030 | 1.3:+16646709 | None:intergenic |
| ACCAATTTCAATTACTTGAG+TGG | 0.489380 | 1.3:+16643995 | None:intergenic |
| TCCTTTGTCACTTCCCTCGA+TGG | 0.489814 | 1.3:+16645009 | None:intergenic |
| GGAATTGGATCAACAATGAC+TGG | 0.492228 | 1.3:+16656744 | None:intergenic |
| TGGTTGTCAGATTGCAGACC+GGG | 0.492299 | 1.3:-16659641 | MS.gene62982:CDS |
| CGCTGTCTGCAAACAAACTG+TGG | 0.492730 | 1.3:+16648187 | None:intergenic |
| AAAGGCCGGTTCCAATGAAT+CGG | 0.493622 | 1.3:-16655393 | MS.gene62982:CDS |
| TGAAACAGCTTGCAGTTGAC+CGG | 0.494944 | 1.3:+16655435 | None:intergenic |
| GGGAAGTGACAAAGGATTTG+AGG | 0.495742 | 1.3:-16645002 | MS.gene62982:CDS |
| AGTAGCCGATTCATTGGAAC+CGG | 0.496130 | 1.3:+16655388 | None:intergenic |
| TCATTACTTGAGGTGATTGT+TGG | 0.496922 | 1.3:-16659661 | MS.gene62982:CDS |
| AAACGAAATCTAAAATGAAT+CGG | 0.497212 | 1.3:-16661216 | MS.gene62982:CDS |
| TTTCATGGTTCCAACTGAGT+TGG | 0.497308 | 1.3:-16648471 | MS.gene62982:CDS |
| GTGATGAATTCTGAGAGGTT+TGG | 0.497651 | 1.3:-16643942 | MS.gene62982:CDS |
| GAGCATGTAACCGACAAAGT+TGG | 0.500156 | 1.3:-16659607 | MS.gene62982:CDS |
| TATATTGAAGACATTGATTG+AGG | 0.503798 | 1.3:+16660908 | None:intergenic |
| GCACACGGGGACATTTATGA+TGG | 0.504771 | 1.3:-16660558 | MS.gene62982:CDS |
| TTGTTCAATTTCATTACTTG+AGG | 0.510057 | 1.3:-16659671 | MS.gene62982:CDS |
| AGACGCACATGTTGCTGCAC+TGG | 0.511644 | 1.3:-16643670 | MS.gene62982:intron |
| TGACACTTTCAGGGTGATGT+TGG | 0.512220 | 1.3:-16654882 | MS.gene62982:intron |
| AATGACGATTGAAATTTCTC+CGG | 0.513924 | 1.3:+16648215 | None:intergenic |
| TTTGGGTAGTGCTCCTCAAG+TGG | 0.515223 | 1.3:-16661134 | MS.gene62982:CDS |
| CCAGATGATGATGGATGAGT+TGG | 0.516635 | 1.3:-16644225 | MS.gene62982:intron |
| CACCAACTCAGGGGCCGAGT+TGG | 0.517789 | 1.3:-16643906 | MS.gene62982:CDS |
| CCTGCACTTAAACTGGAGCT+TGG | 0.519333 | 1.3:-16642959 | MS.gene62982:CDS |
| AATAAACCACAATTGTATCC+TGG | 0.525067 | 1.3:+16644095 | None:intergenic |
| GCCTTGTTCCGCGTCCAACT+CGG | 0.525727 | 1.3:+16643892 | None:intergenic |
| TGGCCCAATTACACCAACTC+AGG | 0.527566 | 1.3:-16643917 | MS.gene62982:CDS |
| CGCTTTGGTGTGATTCAAAG+AGG | 0.530319 | 1.3:-16648120 | MS.gene62982:CDS |
| TTGGGTAGTGCTCCTCAAGT+GGG | 0.534669 | 1.3:-16661133 | MS.gene62982:CDS |
| TTCTTGCCAAGCAAGTCACC+AGG | 0.535464 | 1.3:+16643756 | None:intergenic |
| ACAATTGTGGTTTATTACAT+GGG | 0.540012 | 1.3:-16644088 | MS.gene62982:CDS |
| TGGAAATATCCTACACATCA+AGG | 0.540440 | 1.3:+16661165 | None:intergenic |
| CAGATAACCGACTTACCACC+AGG | 0.541332 | 1.3:-16645055 | MS.gene62982:CDS |
| AGGAAATTGCTCCAGATCAT+GGG | 0.542959 | 1.3:+16642979 | None:intergenic |
| AGGATTTGAGGATGCCTACA+AGG | 0.545223 | 1.3:-16644990 | MS.gene62982:intron |
| CTCGGCCTTACGTATTGCTG+TGG | 0.546224 | 1.3:-16648157 | MS.gene62982:CDS |
| GACTTGATCAATCACCTAGC+AGG | 0.546791 | 1.3:+16642918 | None:intergenic |
| TTCCATTTCCAATTAGATCA+GGG | 0.547110 | 1.3:+16661245 | None:intergenic |
| GTGGATGAGCAGCATCGCTT+TGG | 0.547311 | 1.3:-16648135 | MS.gene62982:CDS |
| TTTCAGGGTGATGTTGGATG+TGG | 0.549338 | 1.3:-16654876 | MS.gene62982:intron |
| ATCTCAAAGTTATCTCAGAC+CGG | 0.549467 | 1.3:-16644121 | MS.gene62982:CDS |
| CGGTTTCCAGGATACAATTG+TGG | 0.550814 | 1.3:-16644101 | MS.gene62982:CDS |
| CACCATATAAAGCAAGCGCA+AGG | 0.551892 | 1.3:+16646696 | None:intergenic |
| CTCAGGGGCCGAGTTGGACG+CGG | 0.553537 | 1.3:-16643900 | MS.gene62982:CDS |
| ATGATGTCCCGAAGGAATGT+TGG | 0.554639 | 1.3:+16657805 | None:intergenic |
| CCAAGCTCCAGTTTAAGTGC+AGG | 0.555098 | 1.3:+16642959 | None:intergenic |
| ATGTTGCAGGGTATCCAGAC+CGG | 0.555872 | 1.3:-16648234 | MS.gene62982:intron |
| GGAAGATTCTCAAAAGAAAG+TGG | 0.556543 | 1.3:-16660858 | MS.gene62982:CDS |
| TGTTCCAGATGCATCGATGA+TGG | 0.557877 | 1.3:-16643967 | MS.gene62982:CDS |
| CATCAAATATAAGTCTCTTG+CGG | 0.558668 | 1.3:+16656313 | None:intergenic |
| GGCCTTACGTATTGCTGTGG+TGG | 0.559193 | 1.3:-16648154 | MS.gene62982:CDS |
| ACGTTAGGGAAGTTTAGGAC+TGG | 0.563325 | 1.3:-16644038 | MS.gene62982:CDS |
| CCAGTACTTTCAAACGATGA+AGG | 0.564004 | 1.3:+16643832 | None:intergenic |
| GCCGAGTTGGACGCGGAACA+AGG | 0.565761 | 1.3:-16643893 | MS.gene62982:CDS |
| GAAGATTCTCAAAAGAAAGT+GGG | 0.565771 | 1.3:-16660857 | MS.gene62982:CDS |
| TTGGTTGTCAGATTGCAGAC+CGG | 0.566943 | 1.3:-16659642 | MS.gene62982:CDS |
| GGTACACAAGTAGAAAAGGA+TGG | 0.572043 | 1.3:-16655562 | MS.gene62982:CDS |
| GATGGATGAGTTGGAAGATG+GGG | 0.572787 | 1.3:-16644216 | MS.gene62982:CDS |
| TGTATCTACCCTTCAAAAGG+GGG | 0.574846 | 1.3:-16657835 | MS.gene62982:CDS |
| TATCCCTTTGCGCTAAAGAG+AGG | 0.577247 | 1.3:-16657864 | MS.gene62982:CDS |
| ATGGCCTCTCTTTAGCGCAA+AGG | 0.577278 | 1.3:+16657860 | None:intergenic |
| ACGACATCTCCTTGATGTGT+AGG | 0.579277 | 1.3:-16661174 | MS.gene62982:CDS |
| GCATAAATTTACAGACCAGA+AGG | 0.582627 | 1.3:-16662433 | MS.gene62982:CDS |
| GATTGAGGTGTTACAGGACA+AGG | 0.587873 | 1.3:+16660923 | None:intergenic |
| TACTGGAGCAATCATCAGAT+GGG | 0.589389 | 1.3:-16643815 | MS.gene62982:CDS |
| CATAGCATGTGTGAGTGGTA+AGG | 0.591020 | 1.3:-16659479 | MS.gene62982:intron |
| TGGATCAACAATGACTGGCA+AGG | 0.594831 | 1.3:+16656749 | None:intergenic |
| ATCTTCAATTTCGAGTCTGG+AGG | 0.595795 | 1.3:-16646804 | MS.gene62982:CDS |
| GCAGACATGGCAAGAACATG+TGG | 0.598690 | 1.3:+16646737 | None:intergenic |
| ATGGTCCTGTCTCACCAAGA+AGG | 0.599941 | 1.3:-16655488 | MS.gene62982:CDS |
| TCCTTCGGGACATCATTGCA+AGG | 0.600821 | 1.3:-16657798 | MS.gene62982:intron |
| GAAGGATTGACATACAAAGA+AGG | 0.601579 | 1.3:+16660986 | None:intergenic |
| TTGTATCTACCCTTCAAAAG+GGG | 0.603929 | 1.3:-16657836 | MS.gene62982:CDS |
| GGCCCAATTACACCAACTCA+GGG | 0.604595 | 1.3:-16643916 | MS.gene62982:CDS |
| GTACACAAGTAGAAAAGGAT+GGG | 0.605428 | 1.3:-16655561 | MS.gene62982:CDS |
| ACACTGTGTGTACAAAGGAA+TGG | 0.606966 | 1.3:-16655507 | MS.gene62982:CDS |
| GTACTGGAGCAATCATCAGA+TGG | 0.606977 | 1.3:-16643816 | MS.gene62982:CDS |
| TAAAAGTAAAACGTGTGCCA+CGG | 0.607986 | 1.3:+16659545 | None:intergenic |
| ACCATATAAAGCAAGCGCAA+GGG | 0.608898 | 1.3:+16646697 | None:intergenic |
| ACAAGCGCGGATTATTCGCA+AGG | 0.610496 | 1.3:-16648345 | MS.gene62982:intron |
| CGGAAGTAAGAGTATAGGGA+AGG | 0.611652 | 1.3:+16655455 | None:intergenic |
| GTTCAAACATATACCATCGA+GGG | 0.613078 | 1.3:-16645022 | MS.gene62982:CDS |
| ATCCACCACAGCAATACGTA+AGG | 0.613184 | 1.3:+16648152 | None:intergenic |
| ACCATCGAGGGAAGTGACAA+AGG | 0.613822 | 1.3:-16645010 | MS.gene62982:CDS |
| CCAGTGAGTAAAGCAACAGT+TGG | 0.614716 | 1.3:+16648383 | None:intergenic |
| TGGATTGCAACCAACTCAGT+TGG | 0.614757 | 1.3:+16648461 | None:intergenic |
| AATCTGGTAATAGGAAACTC+GGG | 0.616903 | 1.3:+16643717 | None:intergenic |
| AATCCTTCCTGGTGGTAAGT+CGG | 0.617389 | 1.3:+16645048 | None:intergenic |
| ATGGATGAGTTGGAAGATGG+GGG | 0.618804 | 1.3:-16644215 | MS.gene62982:CDS |
| GTTGCTTGAAAACTTGGACG+AGG | 0.619505 | 1.3:-16648417 | MS.gene62982:CDS |
| GCTGTCTGCAAACAAACTGT+GGG | 0.622441 | 1.3:+16648188 | None:intergenic |
| CGATTCTTCAGAGGTAAGAG+AGG | 0.624675 | 1.3:-16661035 | MS.gene62982:CDS |
| TGGGATGGGAGTAGCAGACA+TGG | 0.625483 | 1.3:+16646724 | None:intergenic |
| CCATCATACAAACCCACTTG+AGG | 0.625602 | 1.3:+16661121 | None:intergenic |
| TTCAGGGTGATGTTGGATGT+GGG | 0.626703 | 1.3:-16654875 | MS.gene62982:intron |
| ACCTTGCAATGATGTCCCGA+AGG | 0.628557 | 1.3:+16657797 | None:intergenic |
| TGGTGATATGTCACTGACAC+AGG | 0.629735 | 1.3:-16646678 | MS.gene62982:intron |
| GACCTATTATTACGTGGACC+TGG | 0.631359 | 1.3:-16643774 | MS.gene62982:CDS |
| GAATTCTGAGAGGTTTGGAA+TGG | 0.632033 | 1.3:-16643937 | MS.gene62982:CDS |
| TTTCAAACGATGAAGGCCAC+TGG | 0.635677 | 1.3:+16643839 | None:intergenic |
| ACATTTATACGATTCTTCAG+AGG | 0.636619 | 1.3:-16661044 | MS.gene62982:CDS |
| CTAATCTACAGAATGCACAC+GGG | 0.637931 | 1.3:-16660572 | MS.gene62982:CDS |
| GCAGAAGCAGCACGAAGCTG+AGG | 0.639554 | 1.3:+16644146 | None:intergenic |
| AGAAGGTGATGTTTCAGAGA+CGG | 0.641067 | 1.3:+16661003 | None:intergenic |
| AAATAACACTGTGTGTACAA+AGG | 0.641684 | 1.3:-16655512 | MS.gene62982:CDS |
| ATTACCAGATTGGAAGTCGA+CGG | 0.641804 | 1.3:-16643705 | MS.gene62982:CDS |
| CACACGGGGACATTTATGAT+GGG | 0.644132 | 1.3:-16660557 | MS.gene62982:CDS |
| ATTTGTTTCAGAATATGTTG+TGG | 0.648943 | 1.3:+16661096 | None:intergenic |
| CAATTATTCCAAATGCTCGA+AGG | 0.649656 | 1.3:-16655589 | MS.gene62982:CDS |
| AGATAACTGTGGGTTTCACA+CGG | 0.649674 | 1.3:-16660738 | MS.gene62982:intron |
| TTAATATCATCAACTGCCAG+TGG | 0.651291 | 1.3:-16643855 | MS.gene62982:CDS |
| GTGAGCAACTAGATAACTGT+GGG | 0.657830 | 1.3:-16660748 | MS.gene62982:CDS |
| TGTCTGCTACTCCCATCCCA+AGG | 0.667833 | 1.3:-16646721 | MS.gene62982:CDS |
| GCTAATCTACAGAATGCACA+CGG | 0.668201 | 1.3:-16660573 | MS.gene62982:CDS |
| CGTGAGCAACTAGATAACTG+TGG | 0.671660 | 1.3:-16660749 | MS.gene62982:CDS |
| AAGATTCTCAAAAGAAAGTG+GGG | 0.672414 | 1.3:-16660856 | MS.gene62982:CDS |
| TAACCGACTTACCACCAGGA+AGG | 0.674759 | 1.3:-16645051 | MS.gene62982:CDS |
| AATATGGACCTATTATTACG+TGG | 0.675630 | 1.3:-16643780 | MS.gene62982:CDS |
| AAAATTGGATCAAGTTACTG+GGG | 0.676832 | 1.3:-16660879 | MS.gene62982:CDS |
| TGTAGATTAGCATATGATCG+TGG | 0.678884 | 1.3:+16660585 | None:intergenic |
| AATTCCTAAAGACATTAGAG+AGG | 0.682353 | 1.3:-16656727 | MS.gene62982:CDS |
| AGAGACATAGCATGTGTGAG+TGG | 0.690882 | 1.3:-16659484 | MS.gene62982:CDS |
| CAATCACCTAGCAGGCAAAG+CGG | 0.695432 | 1.3:+16642926 | None:intergenic |
| TGAACAGGAATCCTTCCTGG+TGG | 0.697461 | 1.3:+16645040 | None:intergenic |
| CAACCCCACTAAAACAAGCG+CGG | 0.702736 | 1.3:-16648358 | MS.gene62982:CDS |
| GTTGTTGAAATAGACCAGCA+CGG | 0.715016 | 1.3:-16662411 | MS.gene62982:CDS |
| TGTTCAAACATATACCATCG+AGG | 0.717968 | 1.3:-16645023 | MS.gene62982:CDS |
| TAATCTACAGAATGCACACG+GGG | 0.721253 | 1.3:-16660571 | MS.gene62982:CDS |
| TGGTTGTGATGAATTCTGAG+AGG | 0.736566 | 1.3:-16643947 | MS.gene62982:CDS |
| GCCCAATTACACCAACTCAG+GGG | 0.737840 | 1.3:-16643915 | MS.gene62982:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 16642925 | 16662472 | 16642925 | ID=MS.gene62982 |
| chr1.3 | mRNA | 16642925 | 16662472 | 16642925 | ID=MS.gene62982.t1;Parent=MS.gene62982 |
| chr1.3 | exon | 16662380 | 16662472 | 16662380 | ID=MS.gene62982.t1.exon1;Parent=MS.gene62982.t1 |
| chr1.3 | CDS | 16662380 | 16662472 | 16662380 | ID=cds.MS.gene62982.t1;Parent=MS.gene62982.t1 |
| chr1.3 | exon | 16660739 | 16661293 | 16660739 | ID=MS.gene62982.t1.exon2;Parent=MS.gene62982.t1 |
| chr1.3 | CDS | 16660739 | 16661293 | 16660739 | ID=cds.MS.gene62982.t1;Parent=MS.gene62982.t1 |
| chr1.3 | exon | 16660519 | 16660631 | 16660519 | ID=MS.gene62982.t1.exon3;Parent=MS.gene62982.t1 |
| chr1.3 | CDS | 16660519 | 16660631 | 16660519 | ID=cds.MS.gene62982.t1;Parent=MS.gene62982.t1 |
| chr1.3 | exon | 16659480 | 16659708 | 16659480 | ID=MS.gene62982.t1.exon4;Parent=MS.gene62982.t1 |
| chr1.3 | CDS | 16659480 | 16659708 | 16659480 | ID=cds.MS.gene62982.t1;Parent=MS.gene62982.t1 |
| chr1.3 | exon | 16657799 | 16657962 | 16657799 | ID=MS.gene62982.t1.exon5;Parent=MS.gene62982.t1 |
| chr1.3 | CDS | 16657799 | 16657962 | 16657799 | ID=cds.MS.gene62982.t1;Parent=MS.gene62982.t1 |
| chr1.3 | exon | 16656701 | 16656782 | 16656701 | ID=MS.gene62982.t1.exon6;Parent=MS.gene62982.t1 |
| chr1.3 | CDS | 16656701 | 16656782 | 16656701 | ID=cds.MS.gene62982.t1;Parent=MS.gene62982.t1 |
| chr1.3 | exon | 16656296 | 16656385 | 16656296 | ID=MS.gene62982.t1.exon7;Parent=MS.gene62982.t1 |
| chr1.3 | CDS | 16656296 | 16656385 | 16656296 | ID=cds.MS.gene62982.t1;Parent=MS.gene62982.t1 |
| chr1.3 | exon | 16655384 | 16655617 | 16655384 | ID=MS.gene62982.t1.exon8;Parent=MS.gene62982.t1 |
| chr1.3 | CDS | 16655384 | 16655617 | 16655384 | ID=cds.MS.gene62982.t1;Parent=MS.gene62982.t1 |
| chr1.3 | exon | 16654821 | 16654892 | 16654821 | ID=MS.gene62982.t1.exon9;Parent=MS.gene62982.t1 |
| chr1.3 | CDS | 16654821 | 16654892 | 16654821 | ID=cds.MS.gene62982.t1;Parent=MS.gene62982.t1 |
| chr1.3 | exon | 16648346 | 16648498 | 16648346 | ID=MS.gene62982.t1.exon10;Parent=MS.gene62982.t1 |
| chr1.3 | CDS | 16648346 | 16648498 | 16648346 | ID=cds.MS.gene62982.t1;Parent=MS.gene62982.t1 |
| chr1.3 | exon | 16648104 | 16648247 | 16648104 | ID=MS.gene62982.t1.exon11;Parent=MS.gene62982.t1 |
| chr1.3 | CDS | 16648104 | 16648247 | 16648104 | ID=cds.MS.gene62982.t1;Parent=MS.gene62982.t1 |
| chr1.3 | exon | 16646679 | 16646837 | 16646679 | ID=MS.gene62982.t1.exon12;Parent=MS.gene62982.t1 |
| chr1.3 | CDS | 16646679 | 16646837 | 16646679 | ID=cds.MS.gene62982.t1;Parent=MS.gene62982.t1 |
| chr1.3 | exon | 16644991 | 16645074 | 16644991 | ID=MS.gene62982.t1.exon13;Parent=MS.gene62982.t1 |
| chr1.3 | CDS | 16644991 | 16645074 | 16644991 | ID=cds.MS.gene62982.t1;Parent=MS.gene62982.t1 |
| chr1.3 | exon | 16643671 | 16644243 | 16643671 | ID=MS.gene62982.t1.exon14;Parent=MS.gene62982.t1 |
| chr1.3 | CDS | 16643671 | 16644243 | 16643671 | ID=cds.MS.gene62982.t1;Parent=MS.gene62982.t1 |
| chr1.3 | exon | 16642925 | 16643017 | 16642925 | ID=MS.gene62982.t1.exon15;Parent=MS.gene62982.t1 |
| chr1.3 | CDS | 16642925 | 16643017 | 16642925 | ID=cds.MS.gene62982.t1;Parent=MS.gene62982.t1 |
| Gene Sequence |
| Protein sequence |
