AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63883


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63883.t1 MTR_5g094610 96.620 503 11 2 1 497 1 503 0.0 976
MS.gene63883.t1 MTR_2g034600 32.456 228 139 7 224 445 215 433 3.12e-26 112
MS.gene63883.t1 MTR_2g034600 30.256 195 125 5 253 443 208 395 2.52e-17 85.1
MS.gene63883.t1 MTR_2g034600 27.556 225 134 6 179 397 277 478 3.41e-17 84.7
MS.gene63883.t1 MTR_2g034600 32.456 228 139 7 224 445 276 494 4.24e-26 112
MS.gene63883.t1 MTR_2g034600 27.706 231 137 7 173 397 333 539 3.14e-17 84.7
MS.gene63883.t1 MTR_2g034600 30.256 195 125 5 253 443 269 456 3.19e-17 84.7
MS.gene63883.t1 MTR_2g034600 32.456 228 139 7 224 445 280 498 4.40e-26 112
MS.gene63883.t1 MTR_2g034600 30.256 195 125 5 253 443 273 460 3.22e-17 84.7
MS.gene63883.t1 MTR_2g034600 27.706 231 137 7 173 397 337 543 3.34e-17 84.7
MS.gene63883.t1 MTR_5g068860 24.924 329 202 7 185 475 171 492 2.39e-25 109
MS.gene63883.t1 MTR_5g068860 25.263 190 136 3 215 404 134 317 3.13e-11 65.9
MS.gene63883.t1 MTR_2g067230 27.049 244 160 6 221 463 70 296 3.15e-25 106
MS.gene63883.t1 MTR_4g084630 28.571 266 176 6 182 442 42 298 3.85e-24 103
MS.gene63883.t1 MTR_4g084630 28.194 227 159 2 220 443 41 266 4.66e-19 88.6
MS.gene63883.t1 MTR_5g041630 29.319 191 132 1 255 445 88 275 7.33e-21 93.6
MS.gene63883.t1 MTR_6g003960 28.378 222 155 3 221 442 350 567 7.04e-20 93.2
MS.gene63883.t1 MTR_4g070060 23.630 292 185 5 188 443 277 566 1.70e-19 92.0
MS.gene63883.t1 MTR_4g070060 24.476 286 198 7 170 444 184 462 1.46e-12 70.5
MS.gene63883.t1 MTR_1g115415 22.526 293 216 7 152 440 143 428 1.12e-17 86.3
MS.gene63883.t1 MTR_1g115415 24.681 235 167 6 221 451 108 336 4.55e-15 77.8
MS.gene63883.t1 MTR_7g081270 25.984 254 173 7 219 469 42 283 4.25e-16 79.0
MS.gene63883.t1 MTR_2g049780 23.767 223 155 4 221 439 70 281 5.13e-16 79.3
MS.gene63883.t1 MTR_8g105560 25.789 190 137 4 221 408 86 273 8.12e-14 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63883.t1 AT5G55580 61.265 506 167 5 6 496 4 495 0.0 579
MS.gene63883.t1 AT5G55580 73.950 357 89 1 140 496 37 389 0.0 554
MS.gene63883.t1 AT5G55580 56.790 405 146 5 6 395 4 394 6.46e-141 411
MS.gene63883.t1 AT2G21710 26.148 283 199 5 189 468 320 595 1.46e-26 114
MS.gene63883.t1 AT2G21710 23.975 317 221 8 170 475 191 498 3.24e-13 72.4
MS.gene63883.t1 AT4G02990 24.096 332 205 6 183 475 177 500 4.00e-24 105
MS.gene63883.t1 AT4G02990 24.096 332 205 6 183 475 177 500 4.00e-24 105
MS.gene63883.t1 AT4G38160 27.068 266 180 6 183 442 43 300 3.86e-23 100
MS.gene63883.t1 AT4G38160 29.741 232 155 6 220 445 41 270 5.31e-21 94.4
MS.gene63883.t1 AT4G38160 27.068 266 180 6 183 442 43 300 3.86e-23 100
MS.gene63883.t1 AT4G38160 29.741 232 155 6 220 445 41 270 5.31e-21 94.4
MS.gene63883.t1 AT4G38160 27.068 266 180 6 183 442 43 300 4.50e-23 100
MS.gene63883.t1 AT4G38160 29.741 232 155 6 220 445 41 270 6.13e-21 94.7
MS.gene63883.t1 AT1G78930 27.650 217 153 3 226 442 342 554 1.15e-22 102
MS.gene63883.t1 AT1G78930 28.485 165 110 3 214 375 397 556 1.82e-14 76.3
MS.gene63883.t1 AT4G38160 27.068 266 180 6 183 442 43 300 1.29e-22 99.8
MS.gene63883.t1 AT4G38160 29.741 232 155 6 220 445 41 270 1.38e-20 94.0
MS.gene63883.t1 AT2G03050 26.339 224 155 5 221 442 33 248 1.19e-20 92.4
MS.gene63883.t1 AT2G03050 26.339 224 155 5 221 442 34 249 1.33e-20 92.4
MS.gene63883.t1 AT2G21710 24.481 241 175 4 189 426 320 556 3.49e-20 94.0
MS.gene63883.t1 AT2G21710 23.975 317 221 8 170 475 191 498 6.67e-13 71.2
MS.gene63883.t1 AT2G44020 25.424 295 182 5 186 444 145 437 4.39e-20 93.6
MS.gene63883.t1 AT2G44020 25.957 235 152 8 214 445 83 298 1.16e-11 67.4
MS.gene63883.t1 AT4G14605 26.484 219 154 5 224 442 236 447 5.88e-20 93.2
MS.gene63883.t1 AT4G14605 26.222 225 137 6 179 397 262 463 4.76e-14 74.7
MS.gene63883.t1 AT4G14605 26.484 219 154 5 224 442 236 447 5.88e-20 93.2
MS.gene63883.t1 AT4G14605 26.222 225 137 6 179 397 262 463 4.76e-14 74.7
MS.gene63883.t1 AT2G34620 26.389 216 145 4 254 465 85 290 9.31e-20 90.1
MS.gene63883.t1 AT2G21710 24.268 239 174 4 189 424 320 554 1.29e-19 92.4
MS.gene63883.t1 AT2G21710 23.975 317 221 8 170 475 191 498 6.01e-13 71.6
MS.gene63883.t1 AT2G36000 27.200 250 158 8 221 464 74 305 7.38e-19 88.2
MS.gene63883.t1 AT2G36000 27.200 250 158 8 221 464 74 305 8.47e-19 87.8
MS.gene63883.t1 AT3G18870 25.591 254 131 8 224 469 69 272 1.67e-16 80.1

Find 84 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAGCACCTTTGGAATTA+AGG 0.140140 5.1:+75846209 MS.gene63883:CDS
AGCAATAATTTGCCCTATTT+TGG 0.169836 5.1:-75846448 None:intergenic
GACTCACGTTGCTTTCTTAA+TGG 0.188627 5.1:+75846407 MS.gene63883:CDS
CATCTTCACAATGCTCTCTT+TGG 0.219102 5.1:-75846664 None:intergenic
TGACTTCAATCTCTTGTCTT+TGG 0.225373 5.1:-75845343 None:intergenic
CGTTGCTTTCTTAATGGGCT+TGG 0.237557 5.1:+75846413 MS.gene63883:CDS
GGATGCTATTCTCTGACTTT+TGG 0.242258 5.1:-75845711 None:intergenic
ACATGTGCCTCTCATAAATT+TGG 0.244120 5.1:-75846245 None:intergenic
CTCCTTAGGAAATTTATTCT+TGG 0.307382 5.1:-75846738 None:intergenic
TCCAACGTATTGACATTTCA+TGG 0.312784 5.1:+75846601 MS.gene63883:CDS
ATCTTCACAATGCTCTCTTT+GGG 0.327138 5.1:-75846663 None:intergenic
GCTAAGGTACATCGGGTATT+TGG 0.329609 5.1:-75847064 None:intergenic
CCAAGAGGAAATGGTCCTTT+TGG 0.331786 5.1:-75847147 None:intergenic
CTTGATTACTTAAGCACCTT+TGG 0.335021 5.1:+75846201 MS.gene63883:CDS
TCGTCCTCGTCATAAGTTCT+TGG 0.344950 5.1:+75847107 MS.gene63883:CDS
ACTCACGTTGCTTTCTTAAT+GGG 0.345489 5.1:+75846408 MS.gene63883:CDS
GATGTACCTTAGCTTGTCTT+TGG 0.348758 5.1:+75847074 MS.gene63883:CDS
GGCGTACCTAGTACCAAAAT+AGG 0.359195 5.1:+75846435 MS.gene63883:CDS
TAGATTACTTGATGAGTCTT+GGG 0.360371 5.1:+75846307 MS.gene63883:CDS
GTTGCTTTCTTAATGGGCTT+GGG 0.365837 5.1:+75846414 MS.gene63883:CDS
GTTGTCTGAAGAGATTCTTT+TGG 0.368169 5.1:+75846158 MS.gene63883:CDS
GCATGATTAGAGGAAGGAAT+TGG 0.374741 5.1:-75844724 None:intergenic
TTGAAGTCAAAGACAGTTGC+AGG 0.386479 5.1:+75845357 MS.gene63883:CDS
AGAAGCAGAAGCATGATTAG+AGG 0.407915 5.1:-75844734 None:intergenic
TGATGATGAAGATGAAGAAA+TGG 0.419929 5.1:+75844885 MS.gene63883:CDS
GAATTTGTGGTTGCCTCAAA+AGG 0.421558 5.1:-75846356 None:intergenic
ATAGATTACTTGATGAGTCT+TGG 0.425881 5.1:+75846306 MS.gene63883:CDS
CTGCATTACAGTATTGATGA+TGG 0.426933 5.1:+75846708 MS.gene63883:CDS
ACCGTGTATTCTAGAATTTG+TGG 0.436537 5.1:-75846369 None:intergenic
AGATATTTAATTGAGGAAGT+TGG 0.438021 5.1:+75846525 MS.gene63883:CDS
AGAATGTTGAAAGGATTGTA+AGG 0.447642 5.1:-75844700 None:intergenic
GCAGGTGCTATCTCTGTCCT+TGG 0.454121 5.1:+75846975 MS.gene63883:intron
CAAAGAGAGCATTGTGAAGA+TGG 0.456446 5.1:+75846665 MS.gene63883:CDS
ACTAGAGATCCAAGAGGAAA+TGG 0.462060 5.1:-75847156 None:intergenic
TAGACAACAAGAAAAGGAAA+AGG 0.464265 5.1:+75845649 MS.gene63883:CDS
CCAAAAGGACCATTTCCTCT+TGG 0.467379 5.1:+75847147 MS.gene63883:CDS
TGACAAAAGGATTCATCAGT+TGG 0.470816 5.1:-75847180 None:intergenic
TTCGATGGAGAAAAGATATC+CGG 0.473213 5.1:+75846134 MS.gene63883:CDS
TATGACGAGGACGAATTCTC+TGG 0.474277 5.1:-75847098 None:intergenic
TCCAGCCCATCGTTGACAAA+AGG 0.483266 5.1:-75847193 None:intergenic
AATTGAGGAAGTTGGCATCA+AGG 0.486070 5.1:+75846533 MS.gene63883:CDS
TCAATTAAATATCTTACTGT+TGG 0.487640 5.1:-75846516 None:intergenic
GATGTTTCTTAACAAAGAGT+TGG 0.488384 5.1:+75846635 MS.gene63883:CDS
TACAGATAGACAACAAGAAA+AGG 0.490910 5.1:+75845643 MS.gene63883:intron
TTCCAAGAATAAATTTCCTA+AGG 0.495242 5.1:+75846736 MS.gene63883:CDS
AAAGCCGAAGTATTTGTACT+TGG 0.508230 5.1:+75847008 MS.gene63883:CDS
GCGTACCTAGTACCAAAATA+GGG 0.510052 5.1:+75846436 MS.gene63883:CDS
AACAGTAAGATATTTAATTG+AGG 0.516231 5.1:+75846518 MS.gene63883:CDS
TTGTGATTCCTTAATTCCAA+AGG 0.518718 5.1:-75846217 None:intergenic
ACCAATCGAAAATCACCCTA+TGG 0.522397 5.1:+75844838 MS.gene63883:CDS
TCTTTGGCATTAAGATCAGT+AGG 0.525087 5.1:-75845327 None:intergenic
AATAAATGTATGTTCTGCAC+AGG 0.526298 5.1:+75846278 MS.gene63883:CDS
CGGCTTTAGATTAGCTTCCA+AGG 0.526666 5.1:-75846992 None:intergenic
ATAAATTTCCTAAGGAGCAT+AGG 0.526985 5.1:+75846744 MS.gene63883:CDS
TTTACCAAGTACAAATACTT+CGG 0.532246 5.1:-75847012 None:intergenic
AAGACAAGCTAAGGTACATC+GGG 0.535136 5.1:-75847071 None:intergenic
GTAGTTTCGTAGAAATTCGA+TGG 0.537172 5.1:+75846119 MS.gene63883:intron
GTACATCGGGTATTTGGTCA+AGG 0.541793 5.1:-75847058 None:intergenic
GGAATTGGAAGAATGTTGAA+AGG 0.542797 5.1:-75844709 None:intergenic
TCCCTAAAGAAAGCTCCAAA+AGG 0.551170 5.1:+75847132 MS.gene63883:CDS
TCTGGTCCAAAGACAAGCTA+AGG 0.551617 5.1:-75847080 None:intergenic
AGACAACAAGAAAAGGAAAA+GGG 0.551962 5.1:+75845650 MS.gene63883:CDS
ATACGTTGGACAAGAATTTG+AGG 0.570242 5.1:-75846588 None:intergenic
ATGTATGTTCTGCACAGGAA+AGG 0.582720 5.1:+75846283 MS.gene63883:CDS
AGATTACTTGATGAGTCTTG+GGG 0.589186 5.1:+75846308 MS.gene63883:CDS
AAAGACAAGCTAAGGTACAT+CGG 0.593674 5.1:-75847072 None:intergenic
AGAATCTCTTCAGACAACTC+CGG 0.598051 5.1:-75846153 None:intergenic
GTGCTTAAGTAATCAAGAAG+TGG 0.598694 5.1:-75846195 None:intergenic
GCAGAAGCATGATTAGAGGA+AGG 0.598929 5.1:-75844730 None:intergenic
TCTTCATCATCAGAGTCATA+CGG 0.598960 5.1:-75844874 None:intergenic
CATCAGAGTCATACGGAGAG+AGG 0.602302 5.1:-75844867 None:intergenic
ATACTGTAATGCAGAAGCTG+AGG 0.609678 5.1:-75846699 None:intergenic
ACAAGAAAATAACAGTGCAA+AGG 0.615006 5.1:+75845736 MS.gene63883:CDS
TACTGTAATGCAGAAGCTGA+GGG 0.620289 5.1:-75846698 None:intergenic
TCCATGAAATGTCAATACGT+TGG 0.626915 5.1:-75846602 None:intergenic
GGTAAATGAGCTTCACAATG+AGG 0.633064 5.1:+75847029 MS.gene63883:CDS
GGTGTGAGATCTCTTAACAA+TGG 0.634820 5.1:+75845671 MS.gene63883:CDS
AATTCATCCAAATTTATGAG+AGG 0.636805 5.1:+75846238 MS.gene63883:CDS
GAATGTTGAAAGGATTGTAA+GGG 0.639767 5.1:-75844699 None:intergenic
AATCTTGACTAGCCTTACAC+AGG 0.642412 5.1:+75846791 MS.gene63883:CDS
ACCACAAATTCTAGAATACA+CGG 0.657650 5.1:+75846368 MS.gene63883:CDS
GTTGGAACTAGAGATCCAAG+AGG 0.745944 5.1:-75847162 None:intergenic
GAAACCAAGAACTTATGACG+AGG 0.752928 5.1:-75847111 None:intergenic
ACAAATTCTAGAATACACGG+TGG 0.791192 5.1:+75846371 MS.gene63883:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTACTAAAATTAAAAAT+TGG - chr5.1:75845046-75845065 None:intergenic 10.0%
!! AAAATACTAAAATTTCATCA+TGG - chr5.1:75844998-75845017 None:intergenic 15.0%
!! ATATATTTGAATTGAAGTAA+TGG + chr5.1:75845126-75845145 MS.gene63883:intron 15.0%
!! CATTGTAATTATATGTATTT+AGG + chr5.1:75846012-75846031 MS.gene63883:intron 15.0%
!! TAGTAGTATATTATGTTATT+AGG + chr5.1:75845828-75845847 MS.gene63883:intron 15.0%
!! TATATTTGAATTGAAGTAAT+GGG + chr5.1:75845127-75845146 MS.gene63883:intron 15.0%
!! AACAGTAAGATATTTAATTG+AGG + chr5.1:75846518-75846537 MS.gene63883:CDS 20.0%
!! CATAATATACTACTAATAAG+AGG - chr5.1:75845823-75845842 None:intergenic 20.0%
!! TCAATTAAATATCTTACTGT+TGG - chr5.1:75846519-75846538 None:intergenic 20.0%
!!! CTTGGTAGTTTTAATTTTAA+GGG + chr5.1:75845401-75845420 MS.gene63883:intron 20.0%
!!! TTGGTAGTTTTAATTTTAAG+GGG + chr5.1:75845402-75845421 MS.gene63883:intron 20.0%
!!! TTTAGTAGAAAATTTGAAGT+GGG + chr5.1:75845055-75845074 MS.gene63883:intron 20.0%
!!! TTTTAGTAGAAAATTTGAAG+TGG + chr5.1:75845054-75845073 MS.gene63883:intron 20.0%
! AAACTCTCAAAATTCTTGAA+AGG + chr5.1:75845957-75845976 MS.gene63883:intron 25.0%
! AAAGCAATTATAAGATTCCA+TGG - chr5.1:75846085-75846104 None:intergenic 25.0%
! AACTCTCAAAATTCTTGAAA+GGG + chr5.1:75845958-75845977 MS.gene63883:intron 25.0%
! AATTCATCCAAATTTATGAG+AGG + chr5.1:75846238-75846257 MS.gene63883:CDS 25.0%
! AGATATTTAATTGAGGAAGT+TGG + chr5.1:75846525-75846544 MS.gene63883:CDS 25.0%
! CTTTATATTGTAGGTGTATT+TGG + chr5.1:75845451-75845470 MS.gene63883:intron 25.0%
! GTTTGAATTGGAGAAATAAA+TGG + chr5.1:75845207-75845226 MS.gene63883:intron 25.0%
! TTCCAAGAATAAATTTCCTA+AGG + chr5.1:75846736-75846755 MS.gene63883:CDS 25.0%
! TTTACCAAGTACAAATACTT+CGG - chr5.1:75847015-75847034 None:intergenic 25.0%
!! ATAAAGTGTCTATGCTATAT+AGG - chr5.1:75845437-75845456 None:intergenic 25.0%
!! ATATAAGAAGAATCCTTTTG+AGG + chr5.1:75846343-75846362 MS.gene63883:CDS 25.0%
!! ATGTTTGAAAAAGTTTTGCT+TGG + chr5.1:75845383-75845402 MS.gene63883:intron 25.0%
!!! GCTTGGTAGTTTTAATTTTA+AGG + chr5.1:75845400-75845419 MS.gene63883:intron 25.0%
!!! TTTCAAGAATTTTGAGAGTT+TGG - chr5.1:75845958-75845977 None:intergenic 25.0%
AAGGAAACGATGTTATGTAA+TGG + chr5.1:75846872-75846891 MS.gene63883:intron 30.0%
AATAAATGTATGTTCTGCAC+AGG + chr5.1:75846278-75846297 MS.gene63883:CDS 30.0%
ACAAGAAAATAACAGTGCAA+AGG + chr5.1:75845736-75845755 MS.gene63883:CDS 30.0%
ACTAATAAGAGGTCTAACAA+TGG - chr5.1:75845812-75845831 None:intergenic 30.0%
AGAATGTTGAAAGGATTGTA+AGG - chr5.1:75844703-75844722 None:intergenic 30.0%
AGACAACAAGAAAAGGAAAA+GGG + chr5.1:75845650-75845669 MS.gene63883:CDS 30.0%
ATAGATTACTTGATGAGTCT+TGG + chr5.1:75846306-75846325 MS.gene63883:CDS 30.0%
ATGCAAAAATAACCTGTGTA+AGG - chr5.1:75846806-75846825 None:intergenic 30.0%
ATTGAACTTGTGTTGTATCT+AGG + chr5.1:75845290-75845309 MS.gene63883:intron 30.0%
CGTTATAAGGATCAAACAAA+AGG - chr5.1:75846917-75846936 None:intergenic 30.0%
CTCAACACTGTAAGAAAAAA+GGG - chr5.1:75846484-75846503 None:intergenic 30.0%
CTCCTTAGGAAATTTATTCT+TGG - chr5.1:75846741-75846760 None:intergenic 30.0%
GAATGTTGAAAGGATTGTAA+GGG - chr5.1:75844702-75844721 None:intergenic 30.0%
GATGTTTCTTAACAAAGAGT+TGG + chr5.1:75846635-75846654 MS.gene63883:CDS 30.0%
GCATAGACACTTTATATTGT+AGG + chr5.1:75845442-75845461 MS.gene63883:intron 30.0%
TACAGATAGACAACAAGAAA+AGG + chr5.1:75845643-75845662 MS.gene63883:intron 30.0%
TAGACAACAAGAAAAGGAAA+AGG + chr5.1:75845649-75845668 MS.gene63883:CDS 30.0%
TAGATTACTTGATGAGTCTT+GGG + chr5.1:75846307-75846326 MS.gene63883:CDS 30.0%
TCTCAACACTGTAAGAAAAA+AGG - chr5.1:75846485-75846504 None:intergenic 30.0%
TTGTGAAGTTGTGTTTGAAT+TGG + chr5.1:75845195-75845214 MS.gene63883:intron 30.0%
TTGTGATTCCTTAATTCCAA+AGG - chr5.1:75846220-75846239 None:intergenic 30.0%
! AGATTCTTTTGGATGAGAAA+TGG + chr5.1:75846169-75846188 MS.gene63883:CDS 30.0%
! ATAAATTTCCTAAGGAGCAT+AGG + chr5.1:75846744-75846763 MS.gene63883:CDS 30.0%
! TGATGATGAAGATGAAGAAA+TGG + chr5.1:75844885-75844904 MS.gene63883:CDS 30.0%
! TTTGGGACTGAATATTGATT+GGG + chr5.1:75845927-75845946 MS.gene63883:intron 30.0%
!! AACAGTGCAAAGGTATTAAA+TGG + chr5.1:75845746-75845765 MS.gene63883:intron 30.0%
!! ACCACAAATTCTAGAATACA+CGG + chr5.1:75846368-75846387 MS.gene63883:CDS 30.0%
!! AGCAATAATTTGCCCTATTT+TGG - chr5.1:75846451-75846470 None:intergenic 30.0%
!!! CGATTGGTTTTGAGAATTTT+GGG - chr5.1:75844826-75844845 None:intergenic 30.0%
!!! TCGATTGGTTTTGAGAATTT+TGG - chr5.1:75844827-75844846 None:intergenic 30.0%
!!! TGCACTGTTATTTTCTTGTA+AGG - chr5.1:75845735-75845754 None:intergenic 30.0%
!!! TTTTGGGACTGAATATTGAT+TGG + chr5.1:75845926-75845945 MS.gene63883:intron 30.0%
AAAGACAAGCTAAGGTACAT+CGG - chr5.1:75847075-75847094 None:intergenic 35.0%
AACTTGTGTTGTATCTAGGA+CGG + chr5.1:75845294-75845313 MS.gene63883:intron 35.0%
ACACTGTAAGAAAAAAGGGA+CGG - chr5.1:75846480-75846499 None:intergenic 35.0%
ACATGTGCCTCTCATAAATT+TGG - chr5.1:75846248-75846267 None:intergenic 35.0%
ACTAATTCACACACTGACAA+TGG - chr5.1:75845581-75845600 None:intergenic 35.0%
AGATTACTTGATGAGTCTTG+GGG + chr5.1:75846308-75846327 MS.gene63883:CDS 35.0%
ATACGTTGGACAAGAATTTG+AGG - chr5.1:75846591-75846610 None:intergenic 35.0%
ATCTTCACAATGCTCTCTTT+GGG - chr5.1:75846666-75846685 None:intergenic 35.0%
CTTGATTACTTAAGCACCTT+TGG + chr5.1:75846201-75846220 MS.gene63883:CDS 35.0%
GAGCATAGGAATGAAAAATG+CGG + chr5.1:75846758-75846777 MS.gene63883:CDS 35.0%
GGAATTGGAAGAATGTTGAA+AGG - chr5.1:75844712-75844731 None:intergenic 35.0%
GGCATCAAGGAAAAAGATTT+GGG + chr5.1:75846546-75846565 MS.gene63883:CDS 35.0%
GTAGTTTCGTAGAAATTCGA+TGG + chr5.1:75846119-75846138 MS.gene63883:intron 35.0%
GTGCTTAAGTAATCAAGAAG+TGG - chr5.1:75846198-75846217 None:intergenic 35.0%
TAACTGAGTGTCACGTTATA+AGG - chr5.1:75846930-75846949 None:intergenic 35.0%
TATTGAATGCCCAAAAGTCA+GGG + chr5.1:75845895-75845914 MS.gene63883:intron 35.0%
TCCATGAAATGTCAATACGT+TGG - chr5.1:75846605-75846624 None:intergenic 35.0%
TCTTCATCATCAGAGTCATA+CGG - chr5.1:75844877-75844896 None:intergenic 35.0%
TCTTTGGCATTAAGATCAGT+AGG - chr5.1:75845330-75845349 None:intergenic 35.0%
TGACAAAAGGATTCATCAGT+TGG - chr5.1:75847183-75847202 None:intergenic 35.0%
TGACTTCAATCTCTTGTCTT+TGG - chr5.1:75845346-75845365 None:intergenic 35.0%
TGGCATCAAGGAAAAAGATT+TGG + chr5.1:75846545-75846564 MS.gene63883:CDS 35.0%
TTATTCTCCCTTTGCACAAA+AGG + chr5.1:75846840-75846859 MS.gene63883:intron 35.0%
TTATTGAATGCCCAAAAGTC+AGG + chr5.1:75845894-75845913 MS.gene63883:intron 35.0%
TTCGATGGAGAAAAGATATC+CGG + chr5.1:75846134-75846153 MS.gene63883:CDS 35.0%
! AAAGCCGAAGTATTTGTACT+TGG + chr5.1:75847008-75847027 MS.gene63883:CDS 35.0%
! AATAAAATGCCCCTGACTTT+TGG - chr5.1:75845908-75845927 None:intergenic 35.0%
! ACTCACGTTGCTTTCTTAAT+GGG + chr5.1:75846408-75846427 MS.gene63883:CDS 35.0%
! ATAAAATGCCCCTGACTTTT+GGG - chr5.1:75845907-75845926 None:intergenic 35.0%
! ATGAATCCTTTTGTCAACGA+TGG + chr5.1:75847187-75847206 MS.gene63883:CDS 35.0%
! GATGCTATTCTCTGACTTTT+GGG - chr5.1:75845713-75845732 None:intergenic 35.0%
! GTTGTCTGAAGAGATTCTTT+TGG + chr5.1:75846158-75846177 MS.gene63883:CDS 35.0%
! TCCAACGTATTGACATTTCA+TGG + chr5.1:75846601-75846620 MS.gene63883:CDS 35.0%
! TGAATCCTTTTGTCAACGAT+GGG + chr5.1:75847188-75847207 MS.gene63883:CDS 35.0%
! TTTTCATTCCTATGCTCCTT+AGG - chr5.1:75846755-75846774 None:intergenic 35.0%
!! ACAAATTCTAGAATACACGG+TGG + chr5.1:75846371-75846390 MS.gene63883:CDS 35.0%
!! ACCGTGTATTCTAGAATTTG+TGG - chr5.1:75846372-75846391 None:intergenic 35.0%
!! CTGCATTACAGTATTGATGA+TGG + chr5.1:75846708-75846727 MS.gene63883:CDS 35.0%
!! CTTAAGCACCTTTGGAATTA+AGG + chr5.1:75846209-75846228 MS.gene63883:CDS 35.0%
!!! AAGTCAGGGGCATTTTATTT+TGG + chr5.1:75845909-75845928 MS.gene63883:intron 35.0%
!!! AGTCAGGGGCATTTTATTTT+GGG + chr5.1:75845910-75845929 MS.gene63883:intron 35.0%
!!! ATTTGCCCTATTTTGGTACT+AGG - chr5.1:75846444-75846463 None:intergenic 35.0%
!!! GGTTTTGAGAATTTTGGGAT+TGG - chr5.1:75844821-75844840 None:intergenic 35.0%
!!! TCCTTTTGGAGCTTTCTTTA+GGG - chr5.1:75847136-75847155 None:intergenic 35.0%
AAGACAAGCTAAGGTACATC+GGG - chr5.1:75847074-75847093 None:intergenic 40.0%
AATTGAGGAAGTTGGCATCA+AGG + chr5.1:75846533-75846552 MS.gene63883:CDS 40.0%
ACCAATCGAAAATCACCCTA+TGG + chr5.1:75844838-75844857 MS.gene63883:CDS 40.0%
ACTAGAGATCCAAGAGGAAA+TGG - chr5.1:75847159-75847178 None:intergenic 40.0%
AGAATCTCTTCAGACAACTC+CGG - chr5.1:75846156-75846175 None:intergenic 40.0%
ATACTGTAATGCAGAAGCTG+AGG - chr5.1:75846702-75846721 None:intergenic 40.0%
ATGTATGTTCTGCACAGGAA+AGG + chr5.1:75846283-75846302 MS.gene63883:CDS 40.0%
ATTGAATGCCCAAAAGTCAG+GGG + chr5.1:75845896-75845915 MS.gene63883:intron 40.0%
CATCTTCACAATGCTCTCTT+TGG - chr5.1:75846667-75846686 None:intergenic 40.0%
GAAACCAAGAACTTATGACG+AGG - chr5.1:75847114-75847133 None:intergenic 40.0%
GAATTTGTGGTTGCCTCAAA+AGG - chr5.1:75846359-75846378 None:intergenic 40.0%
GCACAAAAGGAACAAGGAAA+AGG + chr5.1:75846853-75846872 MS.gene63883:intron 40.0%
GCATGATTAGAGGAAGGAAT+TGG - chr5.1:75844727-75844746 None:intergenic 40.0%
GCGTACCTAGTACCAAAATA+GGG + chr5.1:75846436-75846455 MS.gene63883:CDS 40.0%
GCTGCAGTTATTGTGTGATT+AGG + chr5.1:75845850-75845869 MS.gene63883:intron 40.0%
GGTAAATGAGCTTCACAATG+AGG + chr5.1:75847029-75847048 MS.gene63883:CDS 40.0%
GGTGTGAGATCTCTTAACAA+TGG + chr5.1:75845671-75845690 MS.gene63883:CDS 40.0%
TACTGTAATGCAGAAGCTGA+GGG - chr5.1:75846701-75846720 None:intergenic 40.0%
TCCCTAAAGAAAGCTCCAAA+AGG + chr5.1:75847132-75847151 MS.gene63883:CDS 40.0%
TGTCAGACACTAACACGTTA+TGG - chr5.1:75845480-75845499 None:intergenic 40.0%
TTATTGTGTGATTAGGCAGC+AGG + chr5.1:75845857-75845876 MS.gene63883:intron 40.0%
TTGAAGTCAAAGACAGTTGC+AGG + chr5.1:75845357-75845376 MS.gene63883:CDS 40.0%
TTGAATGTAACCACACGAGT+CGG - chr5.1:75845508-75845527 None:intergenic 40.0%
! AGAAGCAGAAGCATGATTAG+AGG - chr5.1:75844737-75844756 None:intergenic 40.0%
! CCTTGTTCCTTTTGTGCAAA+GGG - chr5.1:75846850-75846869 None:intergenic 40.0%
! GACTCACGTTGCTTTCTTAA+TGG + chr5.1:75846407-75846426 MS.gene63883:CDS 40.0%
! GGAGAGAGGAATTTTCCATA+GGG - chr5.1:75844856-75844875 None:intergenic 40.0%
! GGATGCTATTCTCTGACTTT+TGG - chr5.1:75845714-75845733 None:intergenic 40.0%
! TCCATAGGGTGATTTTCGAT+TGG - chr5.1:75844842-75844861 None:intergenic 40.0%
! TCCTTGTTCCTTTTGTGCAA+AGG - chr5.1:75846851-75846870 None:intergenic 40.0%
!! AATCTTGACTAGCCTTACAC+AGG + chr5.1:75846791-75846810 MS.gene63883:CDS 40.0%
!! CAAAGAGAGCATTGTGAAGA+TGG + chr5.1:75846665-75846684 MS.gene63883:CDS 40.0%
!! GATGTACCTTAGCTTGTCTT+TGG + chr5.1:75847074-75847093 MS.gene63883:CDS 40.0%
!! GTTGCTTTCTTAATGGGCTT+GGG + chr5.1:75846414-75846433 MS.gene63883:CDS 40.0%
!!! ACCCACAACTCGAGTTTTTT+GGG + chr5.1:75845985-75846004 MS.gene63883:intron 40.0%
!!! GTCCTTTTGGAGCTTTCTTT+AGG - chr5.1:75847137-75847156 None:intergenic 40.0%
ATAAGATTCCATGGCACCAC+AGG - chr5.1:75846076-75846095 None:intergenic 45.0%
CCAAAAGGACCATTTCCTCT+TGG + chr5.1:75847147-75847166 MS.gene63883:CDS 45.0%
CCCTTTGCACAAAAGGAACA+AGG + chr5.1:75846847-75846866 MS.gene63883:intron 45.0%
GCAGCCAATTAATGTACCTG+TGG + chr5.1:75846057-75846076 MS.gene63883:intron 45.0%
GCTAAGGTACATCGGGTATT+TGG - chr5.1:75847067-75847086 None:intergenic 45.0%
GGCACCACAGGTACATTAAT+TGG - chr5.1:75846064-75846083 None:intergenic 45.0%
GGCGTACCTAGTACCAAAAT+AGG + chr5.1:75846435-75846454 MS.gene63883:CDS 45.0%
GTACATCGGGTATTTGGTCA+AGG - chr5.1:75847061-75847080 None:intergenic 45.0%
GTTGGAACTAGAGATCCAAG+AGG - chr5.1:75847165-75847184 None:intergenic 45.0%
TATGACGAGGACGAATTCTC+TGG - chr5.1:75847101-75847120 None:intergenic 45.0%
TCGTCCTCGTCATAAGTTCT+TGG + chr5.1:75847107-75847126 MS.gene63883:CDS 45.0%
TCTGGTCCAAAGACAAGCTA+AGG - chr5.1:75847083-75847102 None:intergenic 45.0%
! CCAAGAGGAAATGGTCCTTT+TGG - chr5.1:75847150-75847169 None:intergenic 45.0%
! CCCCAAAAAACTCGAGTTGT+GGG - chr5.1:75845989-75846008 None:intergenic 45.0%
! CGGAGAGAGGAATTTTCCAT+AGG - chr5.1:75844857-75844876 None:intergenic 45.0%
! GCAGAAGCATGATTAGAGGA+AGG - chr5.1:75844733-75844752 None:intergenic 45.0%
! TCCCCAAAAAACTCGAGTTG+TGG - chr5.1:75845990-75846009 None:intergenic 45.0%
! TTAATGTACCTGTGGTGCCA+TGG + chr5.1:75846065-75846084 MS.gene63883:intron 45.0%
!! CGGCTTTAGATTAGCTTCCA+AGG - chr5.1:75846995-75847014 None:intergenic 45.0%
!! CGTTGCTTTCTTAATGGGCT+TGG + chr5.1:75846413-75846432 MS.gene63883:CDS 45.0%
!!! CCCACAACTCGAGTTTTTTG+GGG + chr5.1:75845986-75846005 MS.gene63883:intron 45.0%
!!! GACCCACAACTCGAGTTTTT+TGG + chr5.1:75845984-75846003 MS.gene63883:intron 45.0%
CATCAGAGTCATACGGAGAG+AGG - chr5.1:75844870-75844889 None:intergenic 50.0%
CTGCAGGCACAGTAGTCAAT+AGG - chr5.1:75846959-75846978 None:intergenic 50.0%
TCCAGCCCATCGTTGACAAA+AGG - chr5.1:75847196-75847215 None:intergenic 50.0%
! CTATTGACTACTGTGCCTGC+AGG + chr5.1:75846957-75846976 MS.gene63883:intron 50.0%
! TCCTTTTGTCAACGATGGGC+TGG + chr5.1:75847192-75847211 MS.gene63883:CDS 50.0%
AGGACAGAGATAGCACCTGC+AGG - chr5.1:75846975-75846994 None:intergenic 55.0%
! GCAGGTGCTATCTCTGTCCT+TGG + chr5.1:75846975-75846994 MS.gene63883:intron 55.0%
!! TGACACAACACCGACTCGTG+TGG + chr5.1:75845495-75845514 MS.gene63883:intron 55.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 75844673 75847296 75844673 ID=MS.gene63883
chr5.1 mRNA 75844673 75847296 75844673 ID=MS.gene63883.t1;Parent=MS.gene63883
chr5.1 exon 75844673 75844981 75844673 ID=MS.gene63883.t1.exon1;Parent=MS.gene63883.t1
chr5.1 CDS 75844673 75844981 75844673 ID=cds.MS.gene63883.t1;Parent=MS.gene63883.t1
chr5.1 exon 75845312 75845378 75845312 ID=MS.gene63883.t1.exon2;Parent=MS.gene63883.t1
chr5.1 CDS 75845312 75845378 75845312 ID=cds.MS.gene63883.t1;Parent=MS.gene63883.t1
chr5.1 exon 75845648 75845757 75845648 ID=MS.gene63883.t1.exon3;Parent=MS.gene63883.t1
chr5.1 CDS 75845648 75845757 75845648 ID=cds.MS.gene63883.t1;Parent=MS.gene63883.t1
chr5.1 exon 75846123 75846812 75846123 ID=MS.gene63883.t1.exon4;Parent=MS.gene63883.t1
chr5.1 CDS 75846123 75846812 75846123 ID=cds.MS.gene63883.t1;Parent=MS.gene63883.t1
chr5.1 exon 75846979 75847296 75846979 ID=MS.gene63883.t1.exon5;Parent=MS.gene63883.t1
chr5.1 CDS 75846979 75847296 75846979 ID=cds.MS.gene63883.t1;Parent=MS.gene63883.t1
Gene Sequence

>MS.gene63883

ATGGCTACTACATTTTTATCACTTTACCCTTACAATCCTTTCAACATTCTTCCAATTCCTTCCTCTAATCATGCTTCTGCTTCTTCTTCTTCTTCTTCTTCTTCATTTCTCAAACGAAGAAAATTCACTGTTCTTTCTGCTCATTCCAATCCCAAAATTCTCAAAACCAATCGAAAATCACCCTATGGAAAATTCCTCTCTCCGTATGACTCTGATGATGAAGATGAAGAAATGGACTTTGAAGACGATGAAGATGAAGATGAAGATGATGAAGATGATGATGATGATGATGATGATGATGTGAGTTTTGTAATTTCAATGACCATGATGAAATTTTAGTATTTTTTAATTAAATTCTGCGATGAATGATCCAATTTTTAATTTTAGTAGAAAATTTGAAGTGGGTTTTTTATTTTAGTTAAGAAGTTTTGAACTTTTTTATCTTTCTGCATAATATATTTGAATTGAAGTAATGGGTTATATCAATCTTCAATGTTGCTGATTTTTTTTTTTATATTTTTTTTGTGAAGTTGTGTTTGAATTGGAGAAATAAATGGTTCTATTTTTATGTTATATTTGTGATTTGAGTGCATTAATTTTAATTTTTGATTTTGCTTATTGAACTTGTGTTGTATCTAGGACGGATTTGCTGAGCCTACTGATCTTAATGCCAAAGACAAGAGATTGAAGTCAAAGACAGTTGCAGGTATATGTTTGAAAAAGTTTTGCTTGGTAGTTTTAATTTTAAGGGGTGAAATTGACCTATATAGCATAGACACTTTATATTGTAGGTGTATTTGGTGTCCATAACGTGTTAGTGTCTGACACAACACCGACTCGTGTGGTTACATTCAATTAGTCAATTTTCTCAAATTATTATCAGTGTCGACTTGTTTGTGTCGTGTCCATTGTCAGTGTGTGAATTAGTGAATCATAGAAGTTGAATGTTACATAATGTTGTTTGTGTTGATACAGATAGACAACAAGAAAAGGAAAAGGGTGTGAGATCTCTTAACAATGGACAGAGCAAAAGATTGCCCAAAAGTCAGAGAATAGCATCCTTACAAGAAAATAACAGTGCAAAGGTATTAAATGGTGATACAATAATCTGTTTAAGTGTTAAGTATTAAATGATGCCATTGTTAGACCTCTTATTAGTAGTATATTATGTTATTAGGCTGCAGTTATTGTGTGATTAGGCAGCAGGCATGTATTAGTCAGTTATTGAATGCCCAAAAGTCAGGGGCATTTTATTTTGGGACTGAATATTGATTGGGAGAGACCAAACTCTCAAAATTCTTGAAAGGGAGAGACCCACAACTCGAGTTTTTTGGGGACTCATTGTAATTATATGTATTTAGGTTTTTCTCATTGTCTGTTTCTAGCAGCCAATTAATGTACCTGTGGTGCCATGGAATCTTATAATTGCTTTTTTTATTTGTAATTGTAGTTTCGTAGAAATTCGATGGAGAAAAGATATCCGGAGTTGTCTGAAGAGATTCTTTTGGATGAGAAATGGTTACCACTTCTTGATTACTTAAGCACCTTTGGAATTAAGGAATCACAATTCATCCAAATTTATGAGAGGCACATGTCGTCATTTCAAATAAATGTATGTTCTGCACAGGAAAGGATAGATTACTTGATGAGTCTTGGGGTTAAACATAAAGATATAAGAAGAATCCTTTTGAGGCAACCACAAATTCTAGAATACACGGTGGAGAACAATTTGAAGACTCACGTTGCTTTCTTAATGGGCTTGGGCGTACCTAGTACCAAAATAGGGCAAATTATTGCTTCTACTCCGTCCCTTTTTTCTTACAGTGTTGAGAAATCGTTAAAACCAACAGTAAGATATTTAATTGAGGAAGTTGGCATCAAGGAAAAAGATTTGGGTAAAGTCATTCAACTGAGTCCTCAAATTCTTGTCCAACGTATTGACATTTCATGGAATACTCGATTGATGTTTCTTAACAAAGAGTTGGATGCACCCAAAGAGAGCATTGTGAAGATGGTGACGAAACACCCTCAGCTTCTGCATTACAGTATTGATGATGGATTGCTTCCAAGAATAAATTTCCTAAGGAGCATAGGAATGAAAAATGCGGACATCTTGAAAATCTTGACTAGCCTTACACAGGTTATTTTTGCATTCATCTTTGTTATTTTATTCTCCCTTTGCACAAAAGGAACAAGGAAAAGGAAACGATGTTATGTAATGGTCTTTTTTTTTTTTTTGCACCTTTTGTTTGATCCTTATAACGTGACACTCAGTTAAAAGTTCCTATTGACTACTGTGCCTGCAGGTGCTATCTCTGTCCTTGGAAGCTAATCTAAAGCCGAAGTATTTGTACTTGGTAAATGAGCTTCACAATGAGGTGCAAACCTTGACCAAATACCCGATGTACCTTAGCTTGTCTTTGGACCAGAGAATTCGTCCTCGTCATAAGTTCTTGGTTTCCCTAAAGAAAGCTCCAAAAGGACCATTTCCTCTTGGATCTCTAGTTCCAACTGATGAATCCTTTTGTCAACGATGGGCTGGAACTACTCTTGATGAATATGCTGCATTTCGACAGAGATTATTGCTCAAAAAACTTGCTGAGAAATATGACAGAAAAATGTGA

Protein sequence

>MS.gene63883.t1

MATTFLSLYPYNPFNILPIPSSNHASASSSSSSSSFLKRRKFTVLSAHSNPKILKTNRKSPYGKFLSPYDSDDEDEEMDFEDDEDEDEDDEDDDDDDDDDVSFDGFAEPTDLNAKDKRLKSKTVADRQQEKEKGVRSLNNGQSKRLPKSQRIASLQENNSAKFRRNSMEKRYPELSEEILLDEKWLPLLDYLSTFGIKESQFIQIYERHMSSFQINVCSAQERIDYLMSLGVKHKDIRRILLRQPQILEYTVENNLKTHVAFLMGLGVPSTKIGQIIASTPSLFSYSVEKSLKPTVRYLIEEVGIKEKDLGKVIQLSPQILVQRIDISWNTRLMFLNKELDAPKESIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNADILKILTSLTQVLSLSLEANLKPKYLYLVNELHNEVQTLTKYPMYLSLSLDQRIRPRHKFLVSLKKAPKGPFPLGSLVPTDESFCQRWAGTTLDEYAAFRQRLLLKKLAEKYDRKM