Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65497.t1 | XP_003590039.1 | 98.9 | 537 | 6 | 0 | 1 | 537 | 1 | 537 | 2.50E-304 | 1053.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65497.t1 | O48639 | 81.2 | 516 | 95 | 2 | 4 | 519 | 5 | 518 | 9.8e-241 | 833.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65497.t1 | G7I5D0 | 98.9 | 537 | 6 | 0 | 1 | 537 | 1 | 537 | 1.8e-304 | 1053.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene65497 | 0.816629 | 5.01E-52 | -1.69E-46 |
| MS.gene050095 | MS.gene65497 | 0.807159 | 5.79E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene65497 | 0.813694 | 2.25E-51 | -1.69E-46 |
| MS.gene050647 | MS.gene65497 | 0.82435 | 8.47E-54 | -1.69E-46 |
| MS.gene050720 | MS.gene65497 | 0.820292 | 7.41E-53 | -1.69E-46 |
| MS.gene051131 | MS.gene65497 | 0.817264 | 3.61E-52 | -1.69E-46 |
| MS.gene051138 | MS.gene65497 | 0.806846 | 6.75E-50 | -1.69E-46 |
| MS.gene051858 | MS.gene65497 | -0.80248 | 5.50E-49 | -1.69E-46 |
| MS.gene052211 | MS.gene65497 | 0.828957 | 6.74E-55 | -1.69E-46 |
| MS.gene05240 | MS.gene65497 | 0.803883 | 2.82E-49 | -1.69E-46 |
| MS.gene05244 | MS.gene65497 | 0.809245 | 2.08E-50 | -1.69E-46 |
| MS.gene052606 | MS.gene65497 | 0.819584 | 1.08E-52 | -1.69E-46 |
| MS.gene053403 | MS.gene65497 | 0.883633 | 3.80E-71 | -1.69E-46 |
| MS.gene053406 | MS.gene65497 | 0.863252 | 2.84E-64 | -1.69E-46 |
| MS.gene053420 | MS.gene65497 | 0.805682 | 1.19E-49 | -1.69E-46 |
| MS.gene053887 | MS.gene65497 | 0.816217 | 6.20E-52 | -1.69E-46 |
| MS.gene054146 | MS.gene65497 | 0.835131 | 2.01E-56 | -1.69E-46 |
| MS.gene054742 | MS.gene65497 | 0.820123 | 8.10E-53 | -1.69E-46 |
| MS.gene05483 | MS.gene65497 | 0.814563 | 1.45E-51 | -1.69E-46 |
| MS.gene055240 | MS.gene65497 | 0.825162 | 5.45E-54 | -1.69E-46 |
| MS.gene056218 | MS.gene65497 | 0.828369 | 9.34E-55 | -1.69E-46 |
| MS.gene056590 | MS.gene65497 | 0.834098 | 3.65E-56 | -1.69E-46 |
| MS.gene056591 | MS.gene65497 | 0.834129 | 3.58E-56 | -1.69E-46 |
| MS.gene056748 | MS.gene65497 | 0.804037 | 2.62E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene65497 | 0.832638 | 8.43E-56 | -1.69E-46 |
| MS.gene059902 | MS.gene65497 | -0.801274 | 9.73E-49 | -1.69E-46 |
| MS.gene059953 | MS.gene65497 | 0.822773 | 1.98E-53 | -1.69E-46 |
| MS.gene059955 | MS.gene65497 | 0.825753 | 3.95E-54 | -1.69E-46 |
| MS.gene06077 | MS.gene65497 | -0.802999 | 4.30E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65497.t1 | MTR_1g043220 | 98.883 | 537 | 6 | 0 | 1 | 537 | 1 | 537 | 0.0 | 1092 |
| MS.gene65497.t1 | MTR_1g043290 | 98.308 | 532 | 9 | 0 | 1 | 532 | 1 | 532 | 0.0 | 1075 |
| MS.gene65497.t1 | MTR_1g043200 | 97.925 | 530 | 11 | 0 | 1 | 530 | 1 | 530 | 0.0 | 1066 |
| MS.gene65497.t1 | MTR_1g074930 | 85.199 | 527 | 78 | 0 | 1 | 527 | 1 | 527 | 0.0 | 948 |
| MS.gene65497.t1 | MTR_3g082700 | 78.346 | 508 | 109 | 1 | 4 | 511 | 5 | 511 | 0.0 | 840 |
| MS.gene65497.t1 | MTR_1g069935 | 75.382 | 524 | 125 | 2 | 4 | 527 | 5 | 524 | 0.0 | 823 |
| MS.gene65497.t1 | MTR_7g096870 | 75.188 | 532 | 128 | 2 | 4 | 535 | 5 | 532 | 0.0 | 817 |
| MS.gene65497.t1 | MTR_7g096880 | 77.165 | 508 | 110 | 2 | 4 | 511 | 5 | 506 | 0.0 | 802 |
| MS.gene65497.t1 | MTR_1g074940 | 75.930 | 511 | 105 | 4 | 4 | 511 | 5 | 500 | 0.0 | 793 |
| MS.gene65497.t1 | MTR_1g069930 | 68.093 | 514 | 161 | 2 | 4 | 517 | 5 | 515 | 0.0 | 741 |
| MS.gene65497.t1 | MTR_1g028600 | 61.742 | 528 | 187 | 5 | 5 | 532 | 3 | 515 | 0.0 | 644 |
| MS.gene65497.t1 | MTR_5g068140 | 57.798 | 545 | 203 | 6 | 1 | 528 | 1 | 535 | 0.0 | 615 |
| MS.gene65497.t1 | MTR_4g083960 | 54.120 | 534 | 219 | 11 | 1 | 528 | 1 | 514 | 0.0 | 536 |
| MS.gene65497.t1 | MTR_3g084110 | 24.295 | 461 | 279 | 18 | 68 | 515 | 69 | 472 | 1.89e-16 | 82.4 |
| MS.gene65497.t1 | MTR_7g005910 | 22.603 | 438 | 276 | 16 | 86 | 514 | 92 | 475 | 5.95e-14 | 74.7 |
| MS.gene65497.t1 | MTR_1g116660 | 21.396 | 444 | 269 | 15 | 89 | 514 | 97 | 478 | 1.91e-12 | 70.1 |
| MS.gene65497.t1 | MTR_7g446340 | 23.758 | 463 | 293 | 16 | 75 | 529 | 104 | 514 | 1.34e-11 | 67.4 |
| MS.gene65497.t1 | MTR_6g007340 | 23.758 | 463 | 293 | 16 | 75 | 529 | 104 | 514 | 1.34e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65497.t1 | AT5G43360 | 81.202 | 516 | 95 | 2 | 4 | 519 | 5 | 518 | 0.0 | 858 |
| MS.gene65497.t1 | AT3G54700 | 80.233 | 516 | 97 | 2 | 4 | 519 | 5 | 515 | 0.0 | 853 |
| MS.gene65497.t1 | AT3G54700 | 80.233 | 516 | 97 | 2 | 4 | 519 | 5 | 515 | 0.0 | 853 |
| MS.gene65497.t1 | AT5G43350 | 80.039 | 516 | 101 | 2 | 4 | 519 | 5 | 518 | 0.0 | 851 |
| MS.gene65497.t1 | AT2G38940 | 77.778 | 513 | 113 | 1 | 4 | 516 | 5 | 516 | 0.0 | 840 |
| MS.gene65497.t1 | AT2G32830 | 75.954 | 524 | 124 | 2 | 7 | 529 | 8 | 530 | 0.0 | 829 |
| MS.gene65497.t1 | AT5G43370 | 79.845 | 516 | 102 | 2 | 4 | 519 | 5 | 518 | 0.0 | 819 |
| MS.gene65497.t1 | AT5G43370 | 79.845 | 516 | 102 | 2 | 4 | 519 | 5 | 518 | 0.0 | 819 |
| MS.gene65497.t1 | AT5G43340 | 65.957 | 517 | 157 | 4 | 7 | 521 | 9 | 508 | 0.0 | 707 |
| MS.gene65497.t1 | AT1G76430 | 48.983 | 541 | 249 | 12 | 4 | 534 | 3 | 526 | 1.81e-172 | 498 |
| MS.gene65497.t1 | AT1G20860 | 49.905 | 529 | 247 | 9 | 5 | 529 | 3 | 517 | 1.21e-169 | 491 |
| MS.gene65497.t1 | AT1G20860 | 49.905 | 529 | 247 | 9 | 5 | 529 | 55 | 569 | 5.43e-169 | 491 |
| MS.gene65497.t1 | AT4G08878 | 64.368 | 261 | 90 | 2 | 30 | 290 | 13 | 270 | 1.20e-113 | 338 |
| MS.gene65497.t1 | AT4G08895 | 55.714 | 140 | 30 | 1 | 321 | 460 | 23 | 130 | 8.49e-47 | 160 |
| MS.gene65497.t1 | AT2G43330 | 23.126 | 467 | 276 | 17 | 68 | 514 | 72 | 475 | 1.36e-11 | 67.4 |
Find 106 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTCTTCTTTGCTAATTT+TGG | 0.173620 | 1.3:+25872801 | MS.gene65497:CDS |
| CACTTTGTTTCTTTAGGTTT+TGG | 0.174225 | 1.3:+25871947 | MS.gene65497:CDS |
| GTTGCTTCAGGACTCTCTTT+TGG | 0.216739 | 1.3:+25871898 | MS.gene65497:CDS |
| GCAGTACTGTTCCGGGTTAC+TGG | 0.231450 | 1.3:+25872625 | MS.gene65497:CDS |
| TGCGTTGTGCAGTACTGTTC+CGG | 0.245438 | 1.3:+25872617 | MS.gene65497:CDS |
| TGGCTACACTTTGTTTCTTT+AGG | 0.248800 | 1.3:+25871941 | MS.gene65497:CDS |
| GCCGTGTAACGAGCGGTTTC+TGG | 0.257283 | 1.3:-25872273 | None:intergenic |
| AGTTATTCTTTGGTTGGCTT+GGG | 0.257756 | 1.3:+25871815 | MS.gene65497:CDS |
| TGGTTGGCTTGGGGACAAAA+TGG | 0.266103 | 1.3:+25871825 | MS.gene65497:CDS |
| TATATTTGATCACAAATATA+AGG | 0.273690 | 1.3:+25872125 | MS.gene65497:CDS |
| CGACATGGTTTGGCTTTGTT+TGG | 0.282199 | 1.3:+25872441 | MS.gene65497:CDS |
| GTTGTTTGTTCTGTTGCTTC+AGG | 0.283215 | 1.3:+25871886 | MS.gene65497:CDS |
| GGTGCAATTGTTGGTGCATT+TGG | 0.288648 | 1.3:+25872918 | MS.gene65497:CDS |
| GATCCTACCAAGACTGATAA+AGG | 0.289352 | 1.3:+25872966 | MS.gene65497:CDS |
| TGCCTCAATTTGATTATGTT+TGG | 0.291088 | 1.3:+25872187 | MS.gene65497:CDS |
| CTAGCAGGCCAGTTATTCTT+TGG | 0.291929 | 1.3:+25871805 | MS.gene65497:CDS |
| AGCAAGAAAGATAATAGAAT+TGG | 0.292218 | 1.3:+25872756 | MS.gene65497:CDS |
| TTCACTACAATTGTGATTGC+TGG | 0.295521 | 1.3:+25871625 | MS.gene65497:CDS |
| ACACTTGGTGGAAGTGTTCC+TGG | 0.300768 | 1.3:-25871745 | None:intergenic |
| TCAGTCATGTCTGGAGAATT+AGG | 0.311053 | 1.3:+25871559 | None:intergenic |
| TCCCTTGTCACAAAGTTGTT+AGG | 0.314005 | 1.3:+25871688 | MS.gene65497:CDS |
| ACAACAAATGTTGTAGCATT+TGG | 0.339412 | 1.3:-25872825 | None:intergenic |
| ACAAAATGACTAGTGATAAA+AGG | 0.342369 | 1.3:+25872382 | MS.gene65497:CDS |
| CAGTTATTCTTTGGTTGGCT+TGG | 0.344269 | 1.3:+25871814 | MS.gene65497:CDS |
| AGTGTAGCCATAACACTCTT+TGG | 0.353685 | 1.3:-25871928 | None:intergenic |
| GTTATGCACTTTACTTGTTC+CGG | 0.355959 | 1.3:+25873055 | MS.gene65497:CDS |
| GTTCCTGGTCTTGTTGGATT+TGG | 0.357998 | 1.3:-25871730 | None:intergenic |
| GCGTTGTGCAGTACTGTTCC+GGG | 0.367157 | 1.3:+25872618 | MS.gene65497:CDS |
| AAAGGGTATCCAACCGGTAT+TGG | 0.377035 | 1.3:+25872984 | MS.gene65497:CDS |
| TTCTTGCTCCAATGATCATA+TGG | 0.386763 | 1.3:-25872741 | None:intergenic |
| CAAGCCAACCAAAGAATAAC+TGG | 0.392014 | 1.3:-25871813 | None:intergenic |
| GGAAGTGTTCCTGGTCTTGT+TGG | 0.393755 | 1.3:-25871736 | None:intergenic |
| TCCTTCTTGCTCAGTGGCCT+CGG | 0.397975 | 1.3:-25873132 | None:intergenic |
| ATTCGCAGCACGACATGGTT+TGG | 0.398280 | 1.3:+25872431 | MS.gene65497:CDS |
| AAGGGTATCCAACCGGTATT+GGG | 0.400842 | 1.3:+25872985 | MS.gene65497:CDS |
| AGTGTTCAATCAGCTGTAAC+AGG | 0.406112 | 1.3:+25871763 | MS.gene65497:CDS |
| CCCTTGTCACAAAGTTGTTA+GGG | 0.410280 | 1.3:+25871689 | MS.gene65497:CDS |
| TGGAGACTTATTCTTATGTT+CGG | 0.414572 | 1.3:+25872207 | MS.gene65497:CDS |
| GCAAGAAAGATAATAGAATT+GGG | 0.436422 | 1.3:+25872757 | MS.gene65497:CDS |
| CAATCACAATTGTAGTGAAA+TGG | 0.437274 | 1.3:-25871621 | None:intergenic |
| CTTGGTGTAATCAACTTTGT+TGG | 0.438140 | 1.3:+25873029 | MS.gene65497:CDS |
| TTGCCATACCATATGATCAT+TGG | 0.440480 | 1.3:+25872733 | MS.gene65497:CDS |
| AGCTGCAGCGGATATGTCTA+AGG | 0.440556 | 1.3:+25872320 | MS.gene65497:CDS |
| CAGGCCAGTTATTCTTTGGT+TGG | 0.441993 | 1.3:+25871809 | MS.gene65497:CDS |
| GTAACAAATTCAGTCATGTC+TGG | 0.451043 | 1.3:+25871550 | None:intergenic |
| TGGATACCCTTTATCAGTCT+TGG | 0.453429 | 1.3:-25872973 | None:intergenic |
| GGTTGGCTTGGGGACAAAAT+GGG | 0.456779 | 1.3:+25871826 | MS.gene65497:CDS |
| TGGTTTAACTCTTATTCTCA+TGG | 0.457780 | 1.3:+25871864 | MS.gene65497:CDS |
| GTAACAGGTGTTGCACTTGT+TGG | 0.458063 | 1.3:+25871778 | MS.gene65497:CDS |
| TGTTTGGAACATGTAGTACT+TGG | 0.462947 | 1.3:+25872457 | MS.gene65497:CDS |
| TGCTACAACATTTGTTGTAC+CGG | 0.469717 | 1.3:+25872830 | MS.gene65497:CDS |
| TCAGCTGCTGCAGGAAAGGC+AGG | 0.471662 | 1.3:+25872897 | MS.gene65497:CDS |
| AAGAACTCTCTTATCATGCT+TGG | 0.472490 | 1.3:+25873011 | MS.gene65497:CDS |
| TTGGTGTAATCAACTTTGTT+GGG | 0.474242 | 1.3:+25873030 | MS.gene65497:CDS |
| CATGGAATCTCAGCTGCTGC+AGG | 0.483171 | 1.3:+25872888 | MS.gene65497:CDS |
| CAGTAGTACGTCAATGCAGC+TGG | 0.487577 | 1.3:-25872237 | None:intergenic |
| TTCTTAATCCCAATACCGGT+TGG | 0.488319 | 1.3:-25872993 | None:intergenic |
| TTTACTTGTTCCGGAATCAA+AGG | 0.491533 | 1.3:+25873064 | MS.gene65497:CDS |
| GGCACTAACAATGATGCTGC+TGG | 0.492284 | 1.3:-25872168 | None:intergenic |
| TACAATTGTGATTGCTGGAA+TGG | 0.494773 | 1.3:+25871630 | MS.gene65497:CDS |
| CGCAATCGGGTGGATTCCTC+CGG | 0.495250 | 1.3:+25872536 | MS.gene65497:CDS |
| ATCCTACCAAGACTGATAAA+GGG | 0.497221 | 1.3:+25872967 | MS.gene65497:CDS |
| ACAATTGTGATTGCTGGAAT+GGG | 0.498862 | 1.3:+25871631 | MS.gene65497:CDS |
| GCACTTGTTGGAACACTAGC+AGG | 0.499060 | 1.3:+25871790 | MS.gene65497:CDS |
| CAGCTGCATTGACGTACTAC+TGG | 0.499570 | 1.3:+25872238 | MS.gene65497:CDS |
| TTACTTGTTCCGGAATCAAA+GGG | 0.501725 | 1.3:+25873065 | MS.gene65497:CDS |
| AGTTGAACTAGAAGTTGAAG+AGG | 0.503525 | 1.3:+25872350 | MS.gene65497:CDS |
| ATCAAGTCCAAAGAGTGTTA+TGG | 0.504430 | 1.3:+25871921 | MS.gene65497:CDS |
| GTTATTCTTTGGTTGGCTTG+GGG | 0.514207 | 1.3:+25871816 | MS.gene65497:CDS |
| AGAGTTCTTAATCCCAATAC+CGG | 0.517475 | 1.3:-25872997 | None:intergenic |
| GGTAGCGTTTATCGATTACA+TGG | 0.520286 | 1.3:+25872653 | MS.gene65497:CDS |
| AATCTCAGCTGCTGCAGGAA+AGG | 0.521693 | 1.3:+25872893 | MS.gene65497:CDS |
| AGTGATAAAAGGAATAGTTA+TGG | 0.524232 | 1.3:+25872393 | MS.gene65497:CDS |
| ACTGATAAAGGGTATCCAAC+CGG | 0.524868 | 1.3:+25872978 | MS.gene65497:CDS |
| AGGTTAAGGTCTACTTGTCA+TGG | 0.528893 | 1.3:+25872870 | MS.gene65497:CDS |
| TGGAATTGTTGCATTGATTG+TGG | 0.531332 | 1.3:+25872098 | MS.gene65497:CDS |
| GTTACAGCTGATTGAACACT+TGG | 0.537306 | 1.3:-25871760 | None:intergenic |
| GACATGATTGTAGCTGAAAG+AGG | 0.545050 | 1.3:-25871997 | None:intergenic |
| CTCCAAACATAATCAAATTG+AGG | 0.545090 | 1.3:-25872189 | None:intergenic |
| TGTTCCGGGTTACTGGTTCA+CGG | 0.545707 | 1.3:+25872632 | MS.gene65497:CDS |
| ACTAGAAGTTGAAGAGGAGA+AGG | 0.546615 | 1.3:+25872356 | MS.gene65497:CDS |
| CCCTAACAACTTTGTGACAA+GGG | 0.549878 | 1.3:-25871689 | None:intergenic |
| GAACGAAGGAGAAGGTGCCG+AGG | 0.555336 | 1.3:+25873115 | MS.gene65497:CDS |
| GGAATCAAAGGGAAAATCGT+TGG | 0.559818 | 1.3:+25873076 | MS.gene65497:CDS |
| GCCAGAAACCGCTCGTTACA+CGG | 0.562042 | 1.3:+25872272 | MS.gene65497:CDS |
| AGTGGAGAGAACGAAGGAGA+AGG | 0.564524 | 1.3:+25873107 | MS.gene65497:CDS |
| GGAAAGGCAGGTGCAATTGT+TGG | 0.566386 | 1.3:+25872909 | MS.gene65497:CDS |
| GCTCCAATGATCATATGGTA+TGG | 0.568949 | 1.3:-25872736 | None:intergenic |
| AGAAATGAATGCAATTCATG+AGG | 0.592937 | 1.3:+25872563 | MS.gene65497:CDS |
| TCCCTAACAACTTTGTGACA+AGG | 0.594495 | 1.3:-25871690 | None:intergenic |
| CAAGTAGACCTTAACCTAGC+CGG | 0.597095 | 1.3:-25872864 | None:intergenic |
| ACAGCTGATTGAACACTTGG+TGG | 0.608784 | 1.3:-25871757 | None:intergenic |
| GCCGAGGCCACTGAGCAAGA+AGG | 0.609359 | 1.3:+25873131 | MS.gene65497:CDS |
| CCGCGGTCCTTCTTGCTCAG+TGG | 0.613065 | 1.3:-25873138 | None:intergenic |
| AAGCAATTCGCAGCACGACA+TGG | 0.614851 | 1.3:+25872426 | MS.gene65497:CDS |
| TACCCTTTATCAGTCTTGGT+AGG | 0.618148 | 1.3:-25872969 | None:intergenic |
| ACATGATTGTAGCTGAAAGA+GGG | 0.622142 | 1.3:-25871996 | None:intergenic |
| GAGTTGAGTGGAGAGAACGA+AGG | 0.632179 | 1.3:+25873101 | MS.gene65497:CDS |
| GAACGCGAAACAAGCTGCAG+CGG | 0.635840 | 1.3:+25872308 | MS.gene65497:CDS |
| GAACCAAATCCAACAAGACC+AGG | 0.636167 | 1.3:+25871727 | MS.gene65497:CDS |
| AAATCGTTGGAAGAGTTGAG+TGG | 0.638926 | 1.3:+25873089 | MS.gene65497:CDS |
| GCTACCGTGAACCAGTAACC+CGG | 0.646440 | 1.3:-25872636 | None:intergenic |
| AACAAGAGCCGTGTAACGAG+CGG | 0.663708 | 1.3:-25872280 | None:intergenic |
| AGTGCTAAATGCACTTGATG+TGG | 0.688145 | 1.3:+25871582 | MS.gene65497:CDS |
| GTAGCGTTTATCGATTACAT+GGG | 0.697486 | 1.3:+25872654 | MS.gene65497:CDS |
| CCACTGAGCAAGAAGGACCG+CGG | 0.738705 | 1.3:+25873138 | MS.gene65497:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTTGATCACAAATATA+AGG | + | chr1.3:25872125-25872144 | MS.gene65497:CDS | 15.0% |
| ! | ACAAAATGACTAGTGATAAA+AGG | + | chr1.3:25872382-25872401 | MS.gene65497:CDS | 25.0% |
| ! | AGCAAGAAAGATAATAGAAT+TGG | + | chr1.3:25872756-25872775 | MS.gene65497:CDS | 25.0% |
| ! | AGTGATAAAAGGAATAGTTA+TGG | + | chr1.3:25872393-25872412 | MS.gene65497:CDS | 25.0% |
| ! | GCAAGAAAGATAATAGAATT+GGG | + | chr1.3:25872757-25872776 | MS.gene65497:CDS | 25.0% |
| ! | TATGCTAACAAAAAAACTAG+AGG | + | chr1.3:25872024-25872043 | MS.gene65497:CDS | 25.0% |
| !! | ACATTCTTCTTTGCTAATTT+TGG | + | chr1.3:25872801-25872820 | MS.gene65497:CDS | 25.0% |
| !! | ATGGGAAGAAAAAAAGTATA+TGG | + | chr1.3:25871844-25871863 | MS.gene65497:CDS | 25.0% |
| ACAACAAATGTTGTAGCATT+TGG | - | chr1.3:25872828-25872847 | None:intergenic | 30.0% | |
| AGAAATGAATGCAATTCATG+AGG | + | chr1.3:25872563-25872582 | MS.gene65497:CDS | 30.0% | |
| CAATCACAATTGTAGTGAAA+TGG | - | chr1.3:25871624-25871643 | None:intergenic | 30.0% | |
| CTCCAAACATAATCAAATTG+AGG | - | chr1.3:25872192-25872211 | None:intergenic | 30.0% | |
| TGCCTCAATTTGATTATGTT+TGG | + | chr1.3:25872187-25872206 | MS.gene65497:CDS | 30.0% | |
| TGGAGACTTATTCTTATGTT+CGG | + | chr1.3:25872207-25872226 | MS.gene65497:CDS | 30.0% | |
| TGGTTTAACTCTTATTCTCA+TGG | + | chr1.3:25871864-25871883 | MS.gene65497:CDS | 30.0% | |
| TTGGTGTAATCAACTTTGTT+GGG | + | chr1.3:25873030-25873049 | MS.gene65497:CDS | 30.0% | |
| ! | ATTGCATTCATTTCTTTTGC+CGG | - | chr1.3:25872558-25872577 | None:intergenic | 30.0% |
| ! | TAGTCAGAATCTTTTCCAAA+AGG | + | chr1.3:25872503-25872522 | MS.gene65497:CDS | 30.0% |
| !! | ATGCAAGGTTTTGGTATATT+AGG | + | chr1.3:25872072-25872091 | MS.gene65497:CDS | 30.0% |
| !! | ATGTAGTACTTGGTTTTTGT+TGG | + | chr1.3:25872467-25872486 | MS.gene65497:CDS | 30.0% |
| !! | CACTTTGTTTCTTTAGGTTT+TGG | + | chr1.3:25871947-25871966 | MS.gene65497:CDS | 30.0% |
| !!! | CGTTTTGCTATTCAAATGAT+GGG | + | chr1.3:25872678-25872697 | MS.gene65497:CDS | 30.0% |
| !!! | TCGTTTTGCTATTCAAATGA+TGG | + | chr1.3:25872677-25872696 | MS.gene65497:CDS | 30.0% |
| AAGAACTCTCTTATCATGCT+TGG | + | chr1.3:25873011-25873030 | MS.gene65497:CDS | 35.0% | |
| ACAATTGTGATTGCTGGAAT+GGG | + | chr1.3:25871631-25871650 | MS.gene65497:CDS | 35.0% | |
| ACATGATTGTAGCTGAAAGA+GGG | - | chr1.3:25871999-25872018 | None:intergenic | 35.0% | |
| AGAGTTCTTAATCCCAATAC+CGG | - | chr1.3:25873000-25873019 | None:intergenic | 35.0% | |
| AGTTGAACTAGAAGTTGAAG+AGG | + | chr1.3:25872350-25872369 | MS.gene65497:CDS | 35.0% | |
| ATCCTACCAAGACTGATAAA+GGG | + | chr1.3:25872967-25872986 | MS.gene65497:CDS | 35.0% | |
| GTTATGCACTTTACTTGTTC+CGG | + | chr1.3:25873055-25873074 | MS.gene65497:CDS | 35.0% | |
| TACAATTGTGATTGCTGGAA+TGG | + | chr1.3:25871630-25871649 | MS.gene65497:CDS | 35.0% | |
| TTACTTGTTCCGGAATCAAA+GGG | + | chr1.3:25873065-25873084 | MS.gene65497:CDS | 35.0% | |
| TTCACTACAATTGTGATTGC+TGG | + | chr1.3:25871625-25871644 | MS.gene65497:CDS | 35.0% | |
| TTCTTGCTCCAATGATCATA+TGG | - | chr1.3:25872744-25872763 | None:intergenic | 35.0% | |
| TTGCCATACCATATGATCAT+TGG | + | chr1.3:25872733-25872752 | MS.gene65497:CDS | 35.0% | |
| TTTACTTGTTCCGGAATCAA+AGG | + | chr1.3:25873064-25873083 | MS.gene65497:CDS | 35.0% | |
| ! | AACGATTTTCCCTTTGATTC+CGG | - | chr1.3:25873077-25873096 | None:intergenic | 35.0% |
| ! | CTTGGTGTAATCAACTTTGT+TGG | + | chr1.3:25873029-25873048 | MS.gene65497:CDS | 35.0% |
| ! | GTAGCGTTTATCGATTACAT+GGG | + | chr1.3:25872654-25872673 | MS.gene65497:CDS | 35.0% |
| ! | TGGCTACACTTTGTTTCTTT+AGG | + | chr1.3:25871941-25871960 | MS.gene65497:CDS | 35.0% |
| ! | TGTTTGGAACATGTAGTACT+TGG | + | chr1.3:25872457-25872476 | MS.gene65497:CDS | 35.0% |
| ! | TTGCGCTAAAAATGTCCTTT+TGG | - | chr1.3:25872521-25872540 | None:intergenic | 35.0% |
| !! | AGTTATTCTTTGGTTGGCTT+GGG | + | chr1.3:25871815-25871834 | MS.gene65497:CDS | 35.0% |
| !! | ATCAAGTCCAAAGAGTGTTA+TGG | + | chr1.3:25871921-25871940 | MS.gene65497:CDS | 35.0% |
| !! | CAAGGTTTTGGTATATTAGG+TGG | + | chr1.3:25872075-25872094 | MS.gene65497:CDS | 35.0% |
| !! | GTTTTTGCTATGCAAGGTTT+TGG | + | chr1.3:25872063-25872082 | MS.gene65497:CDS | 35.0% |
| !! | TGCTACAACATTTGTTGTAC+CGG | + | chr1.3:25872830-25872849 | MS.gene65497:CDS | 35.0% |
| !! | TGGAATTGTTGCATTGATTG+TGG | + | chr1.3:25872098-25872117 | MS.gene65497:CDS | 35.0% |
| !!! | AAGGACATTTTTAGCGCAAT+CGG | + | chr1.3:25872522-25872541 | MS.gene65497:CDS | 35.0% |
| !!! | TGTTTCTTTAGGTTTTGGCT+TGG | + | chr1.3:25871952-25871971 | MS.gene65497:CDS | 35.0% |
| !!! | TTTAGGTTTTGGCTTGGTTT+TGG | + | chr1.3:25871958-25871977 | MS.gene65497:CDS | 35.0% |
| !!! | TTTTGGCTTGGTTTTGGTAT+TGG | + | chr1.3:25871964-25871983 | MS.gene65497:CDS | 35.0% |
| AAATCGTTGGAAGAGTTGAG+TGG | + | chr1.3:25873089-25873108 | MS.gene65497:CDS | 40.0% | |
| ACTAGAAGTTGAAGAGGAGA+AGG | + | chr1.3:25872356-25872375 | MS.gene65497:CDS | 40.0% | |
| AGGTTAAGGTCTACTTGTCA+TGG | + | chr1.3:25872870-25872889 | MS.gene65497:CDS | 40.0% | |
| AGTGCTAAATGCACTTGATG+TGG | + | chr1.3:25871582-25871601 | MS.gene65497:CDS | 40.0% | |
| AGTGTAGCCATAACACTCTT+TGG | - | chr1.3:25871931-25871950 | None:intergenic | 40.0% | |
| AGTGTTCAATCAGCTGTAAC+AGG | + | chr1.3:25871763-25871782 | MS.gene65497:CDS | 40.0% | |
| CAAGCCAACCAAAGAATAAC+TGG | - | chr1.3:25871816-25871835 | None:intergenic | 40.0% | |
| CCCTAACAACTTTGTGACAA+GGG | - | chr1.3:25871692-25871711 | None:intergenic | 40.0% | |
| CCCTTGTCACAAAGTTGTTA+GGG | + | chr1.3:25871689-25871708 | MS.gene65497:CDS | 40.0% | |
| GACATGATTGTAGCTGAAAG+AGG | - | chr1.3:25872000-25872019 | None:intergenic | 40.0% | |
| GATCCTACCAAGACTGATAA+AGG | + | chr1.3:25872966-25872985 | MS.gene65497:CDS | 40.0% | |
| GCTCCAATGATCATATGGTA+TGG | - | chr1.3:25872739-25872758 | None:intergenic | 40.0% | |
| GGAATCAAAGGGAAAATCGT+TGG | + | chr1.3:25873076-25873095 | MS.gene65497:CDS | 40.0% | |
| GTTACAGCTGATTGAACACT+TGG | - | chr1.3:25871763-25871782 | None:intergenic | 40.0% | |
| TACCCTTTATCAGTCTTGGT+AGG | - | chr1.3:25872972-25872991 | None:intergenic | 40.0% | |
| TCCCTAACAACTTTGTGACA+AGG | - | chr1.3:25871693-25871712 | None:intergenic | 40.0% | |
| TCCCTTGTCACAAAGTTGTT+AGG | + | chr1.3:25871688-25871707 | MS.gene65497:CDS | 40.0% | |
| TGGATACCCTTTATCAGTCT+TGG | - | chr1.3:25872976-25872995 | None:intergenic | 40.0% | |
| TTCTTAATCCCAATACCGGT+TGG | - | chr1.3:25872996-25873015 | None:intergenic | 40.0% | |
| ! | AGATTTTTCCGGCTAGGTTA+AGG | + | chr1.3:25872856-25872875 | MS.gene65497:CDS | 40.0% |
| ! | CAAGCTACATTTTCAAACCG+CGG | - | chr1.3:25873158-25873177 | None:intergenic | 40.0% |
| ! | CAGTTATTCTTTGGTTGGCT+TGG | + | chr1.3:25871814-25871833 | MS.gene65497:CDS | 40.0% |
| ! | GCTGGATTTTCTTCAAAGGT+GGG | - | chr1.3:25872153-25872172 | None:intergenic | 40.0% |
| ! | GGTAGCGTTTATCGATTACA+TGG | + | chr1.3:25872653-25872672 | MS.gene65497:CDS | 40.0% |
| ! | GTTGTTTGTTCTGTTGCTTC+AGG | + | chr1.3:25871886-25871905 | MS.gene65497:CDS | 40.0% |
| ! | TGCTGCTGGATTTTCTTCAA+AGG | - | chr1.3:25872157-25872176 | None:intergenic | 40.0% |
| ! | TGCTGGATTTTCTTCAAAGG+TGG | - | chr1.3:25872154-25872173 | None:intergenic | 40.0% |
| !! | ACTGATAAAGGGTATCCAAC+CGG | + | chr1.3:25872978-25872997 | MS.gene65497:CDS | 40.0% |
| !! | GGTTTTGGTATATTAGGTGG+TGG | + | chr1.3:25872078-25872097 | MS.gene65497:CDS | 40.0% |
| !! | GTTATTCTTTGGTTGGCTTG+GGG | + | chr1.3:25871816-25871835 | MS.gene65497:CDS | 40.0% |
| !!! | AGGACATTTTTAGCGCAATC+GGG | + | chr1.3:25872523-25872542 | MS.gene65497:CDS | 40.0% |
| ACAGCTGATTGAACACTTGG+TGG | - | chr1.3:25871760-25871779 | None:intergenic | 45.0% | |
| CAAGTAGACCTTAACCTAGC+CGG | - | chr1.3:25872867-25872886 | None:intergenic | 45.0% | |
| CAGGCCAGTTATTCTTTGGT+TGG | + | chr1.3:25871809-25871828 | MS.gene65497:CDS | 45.0% | |
| CTAGCAGGCCAGTTATTCTT+TGG | + | chr1.3:25871805-25871824 | MS.gene65497:CDS | 45.0% | |
| GAACCAAATCCAACAAGACC+AGG | + | chr1.3:25871727-25871746 | MS.gene65497:CDS | 45.0% | |
| GGTGCAATTGTTGGTGCATT+TGG | + | chr1.3:25872918-25872937 | MS.gene65497:CDS | 45.0% | |
| ! | GCATTCATTTCTTTTGCCGG+AGG | - | chr1.3:25872555-25872574 | None:intergenic | 45.0% |
| ! | GTAACAGGTGTTGCACTTGT+TGG | + | chr1.3:25871778-25871797 | MS.gene65497:CDS | 45.0% |
| ! | GTTGCTTCAGGACTCTCTTT+TGG | + | chr1.3:25871898-25871917 | MS.gene65497:CDS | 45.0% |
| !! | AAAGGGTATCCAACCGGTAT+TGG | + | chr1.3:25872984-25873003 | MS.gene65497:CDS | 45.0% |
| !! | AAGGGTATCCAACCGGTATT+GGG | + | chr1.3:25872985-25873004 | MS.gene65497:CDS | 45.0% |
| !! | CGACATGGTTTGGCTTTGTT+TGG | + | chr1.3:25872441-25872460 | MS.gene65497:CDS | 45.0% |
| !! | GTTCCTGGTCTTGTTGGATT+TGG | - | chr1.3:25871733-25871752 | None:intergenic | 45.0% |
| !! | TGTACCGGCAGAGATTTTTC+CGG | + | chr1.3:25872845-25872864 | MS.gene65497:CDS | 45.0% |
| !!! | ACATTTTTAGCGCAATCGGG+TGG | + | chr1.3:25872526-25872545 | MS.gene65497:CDS | 45.0% |
| !!! | GCTGCTGTTTTTGCTATGCA+AGG | + | chr1.3:25872057-25872076 | MS.gene65497:CDS | 45.0% |
| !!! | TGGCTTGGTTTTGGTATTGG+TGG | + | chr1.3:25871967-25871986 | MS.gene65497:CDS | 45.0% |
| AACAAGAGCCGTGTAACGAG+CGG | - | chr1.3:25872283-25872302 | None:intergenic | 50.0% | |
| AAGCAATTCGCAGCACGACA+TGG | + | chr1.3:25872426-25872445 | MS.gene65497:CDS | 50.0% | |
| AATCTCAGCTGCTGCAGGAA+AGG | + | chr1.3:25872893-25872912 | MS.gene65497:CDS | 50.0% | |
| AGCTGCAGCGGATATGTCTA+AGG | + | chr1.3:25872320-25872339 | MS.gene65497:CDS | 50.0% | |
| AGTGGAGAGAACGAAGGAGA+AGG | + | chr1.3:25873107-25873126 | MS.gene65497:CDS | 50.0% | |
| ATTCGCAGCACGACATGGTT+TGG | + | chr1.3:25872431-25872450 | MS.gene65497:CDS | 50.0% | |
| CAGTAGTACGTCAATGCAGC+TGG | - | chr1.3:25872240-25872259 | None:intergenic | 50.0% | |
| CTAGCCGGAAAAATCTCTGC+CGG | - | chr1.3:25872852-25872871 | None:intergenic | 50.0% | |
| GAGTTGAGTGGAGAGAACGA+AGG | + | chr1.3:25873101-25873120 | MS.gene65497:CDS | 50.0% | |
| GGAAAGGCAGGTGCAATTGT+TGG | + | chr1.3:25872909-25872928 | MS.gene65497:CDS | 50.0% | |
| GGCACTAACAATGATGCTGC+TGG | - | chr1.3:25872171-25872190 | None:intergenic | 50.0% | |
| TGCGTTGTGCAGTACTGTTC+CGG | + | chr1.3:25872617-25872636 | MS.gene65497:CDS | 50.0% | |
| ! | CAGCTGCATTGACGTACTAC+TGG | + | chr1.3:25872238-25872257 | MS.gene65497:CDS | 50.0% |
| ! | GCACTTGTTGGAACACTAGC+AGG | + | chr1.3:25871790-25871809 | MS.gene65497:CDS | 50.0% |
| !! | ACACTTGGTGGAAGTGTTCC+TGG | - | chr1.3:25871748-25871767 | None:intergenic | 50.0% |
| !! | GGAAGTGTTCCTGGTCTTGT+TGG | - | chr1.3:25871739-25871758 | None:intergenic | 50.0% |
| !! | GGTTGGCTTGGGGACAAAAT+GGG | + | chr1.3:25871826-25871845 | MS.gene65497:CDS | 50.0% |
| !! | TGGTTGGCTTGGGGACAAAA+TGG | + | chr1.3:25871825-25871844 | MS.gene65497:CDS | 50.0% |
| !! | TGTTCCGGGTTACTGGTTCA+CGG | + | chr1.3:25872632-25872651 | MS.gene65497:CDS | 50.0% |
| CATGGAATCTCAGCTGCTGC+AGG | + | chr1.3:25872888-25872907 | MS.gene65497:CDS | 55.0% | |
| GAACGCGAAACAAGCTGCAG+CGG | + | chr1.3:25872308-25872327 | MS.gene65497:CDS | 55.0% | |
| GCAGTACTGTTCCGGGTTAC+TGG | + | chr1.3:25872625-25872644 | MS.gene65497:CDS | 55.0% | |
| GCCAGAAACCGCTCGTTACA+CGG | + | chr1.3:25872272-25872291 | MS.gene65497:CDS | 55.0% | |
| GCGTTGTGCAGTACTGTTCC+GGG | + | chr1.3:25872618-25872637 | MS.gene65497:CDS | 55.0% | |
| GCTACCGTGAACCAGTAACC+CGG | - | chr1.3:25872639-25872658 | None:intergenic | 55.0% | |
| TCCTTCTTGCTCAGTGGCCT+CGG | - | chr1.3:25873135-25873154 | None:intergenic | 55.0% | |
| ! | CGGCAGAGATTTTTCCGGCT+AGG | + | chr1.3:25872850-25872869 | MS.gene65497:CDS | 55.0% |
| CCACTGAGCAAGAAGGACCG+CGG | + | chr1.3:25873138-25873157 | MS.gene65497:CDS | 60.0% | |
| GCCGTGTAACGAGCGGTTTC+TGG | - | chr1.3:25872276-25872295 | None:intergenic | 60.0% | |
| TCAGCTGCTGCAGGAAAGGC+AGG | + | chr1.3:25872897-25872916 | MS.gene65497:CDS | 60.0% | |
| ! | CGCAATCGGGTGGATTCCTC+CGG | + | chr1.3:25872536-25872555 | MS.gene65497:CDS | 60.0% |
| !! | GAACGAAGGAGAAGGTGCCG+AGG | + | chr1.3:25873115-25873134 | MS.gene65497:CDS | 60.0% |
| CCGCGGTCCTTCTTGCTCAG+TGG | - | chr1.3:25873141-25873160 | None:intergenic | 65.0% | |
| GCCGAGGCCACTGAGCAAGA+AGG | + | chr1.3:25873131-25873150 | MS.gene65497:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 25871565 | 25873178 | 25871565 | ID=MS.gene65497 |
| chr1.3 | mRNA | 25871565 | 25873178 | 25871565 | ID=MS.gene65497.t1;Parent=MS.gene65497 |
| chr1.3 | exon | 25871565 | 25873178 | 25871565 | ID=MS.gene65497.t1.exon1;Parent=MS.gene65497.t1 |
| chr1.3 | CDS | 25871565 | 25873178 | 25871565 | ID=cds.MS.gene65497.t1;Parent=MS.gene65497.t1 |
| Gene Sequence |
| Protein sequence |
