Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66082.t1 | RHN45970.1 | 91.8 | 208 | 17 | 0 | 1 | 208 | 41 | 248 | 6.30E-102 | 380.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66082.t1 | Q9FKB5 | 47.3 | 226 | 98 | 8 | 1 | 209 | 1 | 222 | 9.3e-38 | 158.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66082.t1 | A0A072TZ90 | 91.8 | 208 | 17 | 0 | 1 | 208 | 1 | 208 | 4.5e-102 | 380.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050319 | MS.gene66082 | 0.800738 | 1.25E-48 | -1.69E-46 |
| MS.gene050330 | MS.gene66082 | 0.805338 | 1.40E-49 | -1.69E-46 |
| MS.gene050787 | MS.gene66082 | -0.843005 | 1.83E-58 | -1.69E-46 |
| MS.gene050807 | MS.gene66082 | -0.81949 | 1.13E-52 | -1.69E-46 |
| MS.gene050820 | MS.gene66082 | -0.801964 | 7.02E-49 | -1.69E-46 |
| MS.gene05119 | MS.gene66082 | 0.807139 | 5.85E-50 | -1.69E-46 |
| MS.gene051265 | MS.gene66082 | -0.813264 | 2.80E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene66082 | -0.804153 | 2.48E-49 | -1.69E-46 |
| MS.gene052358 | MS.gene66082 | 0.816202 | 6.24E-52 | -1.69E-46 |
| MS.gene052361 | MS.gene66082 | 0.829713 | 4.41E-55 | -1.69E-46 |
| MS.gene052673 | MS.gene66082 | 0.813189 | 2.90E-51 | -1.69E-46 |
| MS.gene053054 | MS.gene66082 | 0.828366 | 9.36E-55 | -1.69E-46 |
| MS.gene053221 | MS.gene66082 | -0.821684 | 3.54E-53 | -1.69E-46 |
| MS.gene054291 | MS.gene66082 | 0.819273 | 1.27E-52 | -1.69E-46 |
| MS.gene055356 | MS.gene66082 | -0.80514 | 1.54E-49 | -1.69E-46 |
| MS.gene055357 | MS.gene66082 | -0.811267 | 7.62E-51 | -1.69E-46 |
| MS.gene055358 | MS.gene66082 | -0.810727 | 9.98E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene66082 | -0.80067 | 1.29E-48 | -1.69E-46 |
| MS.gene056069 | MS.gene66082 | 0.810661 | 1.03E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene66082 | -0.810195 | 1.30E-50 | -1.69E-46 |
| MS.gene059896 | MS.gene66082 | 0.817224 | 3.68E-52 | -1.69E-46 |
| MS.gene060137 | MS.gene66082 | 0.851676 | 7.60E-61 | -1.69E-46 |
| MS.gene060322 | MS.gene66082 | -0.805474 | 1.31E-49 | -1.69E-46 |
| MS.gene060634 | MS.gene66082 | 0.866057 | 3.77E-65 | -1.69E-46 |
| MS.gene061040 | MS.gene66082 | 0.8352 | 1.93E-56 | -1.69E-46 |
| MS.gene061114 | MS.gene66082 | 0.825015 | 5.90E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66082.t1 | MTR_7g057920 | 91.827 | 208 | 17 | 0 | 1 | 208 | 1 | 208 | 4.29e-143 | 397 |
| MS.gene66082.t1 | MTR_7g058390 | 90.865 | 208 | 18 | 1 | 1 | 208 | 1 | 207 | 3.44e-141 | 392 |
| MS.gene66082.t1 | MTR_1g072860 | 33.745 | 243 | 106 | 10 | 1 | 209 | 1 | 222 | 2.11e-23 | 93.6 |
| MS.gene66082.t1 | MTR_5g017600 | 30.808 | 198 | 105 | 8 | 25 | 209 | 5 | 183 | 6.58e-17 | 75.5 |
| MS.gene66082.t1 | MTR_4g086450 | 63.158 | 38 | 14 | 0 | 168 | 205 | 113 | 150 | 7.23e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66082.t1 | AT5G48820 | 47.577 | 227 | 96 | 9 | 1 | 209 | 1 | 222 | 8.51e-52 | 166 |
| MS.gene66082.t1 | AT5G48820 | 44.262 | 244 | 97 | 9 | 1 | 209 | 1 | 240 | 4.30e-49 | 160 |
| MS.gene66082.t1 | AT2G32710 | 40.526 | 190 | 82 | 5 | 47 | 207 | 97 | 284 | 1.07e-31 | 117 |
| MS.gene66082.t1 | AT2G32710 | 39.896 | 193 | 82 | 5 | 47 | 207 | 97 | 287 | 1.74e-31 | 116 |
| MS.gene66082.t1 | AT3G24810 | 34.348 | 230 | 89 | 8 | 1 | 209 | 1 | 189 | 8.72e-29 | 106 |
| MS.gene66082.t1 | AT1G49620 | 55.319 | 47 | 21 | 0 | 163 | 209 | 149 | 195 | 9.00e-14 | 67.4 |
| MS.gene66082.t1 | AT1G49620 | 55.319 | 47 | 21 | 0 | 163 | 209 | 154 | 200 | 9.29e-14 | 67.4 |
Find 71 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGATTCGGCGGAGATTTC+TGG | 0.134094 | 7.4:-45034257 | None:intergenic |
| GCAGCAACAAGCATTATTTA+TGG | 0.177822 | 7.4:+45036952 | MS.gene66082:CDS |
| GGCGACATCGCCGGTGGTTT+TGG | 0.265337 | 7.4:-45034163 | None:intergenic |
| CTGCTCCCGTTGGAAATTCT+AGG | 0.303380 | 7.4:+45034358 | MS.gene66082:CDS |
| CTTTGTCTTGTGGTTGAACC+AGG | 0.312665 | 7.4:-45036845 | None:intergenic |
| GCACACCTTGTAGTTTAATC+AGG | 0.331031 | 7.4:+45036801 | MS.gene66082:CDS |
| TTCGCTGTTGAAGGTTCTTT+TGG | 0.335129 | 7.4:+45034453 | MS.gene66082:CDS |
| TTTCTGGAGAGCAAGGGTTT+TGG | 0.359471 | 7.4:-45034241 | None:intergenic |
| GATGGTGATTTCGCTGTTGA+AGG | 0.380464 | 7.4:+45034444 | MS.gene66082:CDS |
| TTCTAGGCTTCGTGAATGTT+CGG | 0.405692 | 7.4:+45034374 | MS.gene66082:CDS |
| GAAAATTTCGCAGAGATTGA+TGG | 0.418505 | 7.4:+45034477 | MS.gene66082:CDS |
| GGCTGGTCCTAGGGAAGTAC+AGG | 0.433584 | 7.4:-45037221 | None:intergenic |
| CCTTACGGAGGCGGCGGCTA+CGG | 0.433971 | 7.4:-45034305 | None:intergenic |
| GGAGGCGGCGGCTACGGAGC+TGG | 0.441102 | 7.4:-45034299 | None:intergenic |
| CGATGTCGCCGCCGTAATCA+TGG | 0.456695 | 7.4:+45034176 | MS.gene66082:CDS |
| TTGCGAGGTGGAAGCGGCGG+AGG | 0.461128 | 7.4:-45034330 | None:intergenic |
| CAGAGATTGATGGTAGAGAT+AGG | 0.461294 | 7.4:+45034487 | MS.gene66082:CDS |
| ACACCACCGCCGTTGGTGTC+CGG | 0.463024 | 7.4:+45034211 | MS.gene66082:CDS |
| CCAGGGGTATGAATGATACT+TGG | 0.467708 | 7.4:-45036827 | None:intergenic |
| TCATCCACTTCATAAGTTGT+TGG | 0.469285 | 7.4:-45036908 | None:intergenic |
| CCGTAGCCGCCGCCTCCGTA+AGG | 0.481312 | 7.4:+45034305 | MS.gene66082:CDS |
| GCGGAGGAACCTTACGGAGG+CGG | 0.492682 | 7.4:-45034314 | None:intergenic |
| TTGTTGCTGCTTCTCTGCCA+AGG | 0.495579 | 7.4:-45036939 | None:intergenic |
| AGACGGTGATTCCATGATTA+CGG | 0.496172 | 7.4:-45034187 | None:intergenic |
| GTGTCCTTGCGAGGTGGAAG+CGG | 0.498314 | 7.4:-45034336 | None:intergenic |
| TTGTCTTGTGGTTGAACCAG+GGG | 0.501803 | 7.4:-45036843 | None:intergenic |
| GAAGAGGAATCAGAGTGATT+CGG | 0.505537 | 7.4:-45034270 | None:intergenic |
| GGGACCCATTCGTATCGTCC+TGG | 0.507892 | 7.4:-45037200 | None:intergenic |
| TACTCCAACAACTTATGAAG+TGG | 0.508794 | 7.4:+45036904 | MS.gene66082:CDS |
| GCGGCTACGGAGCTGGAGGA+AGG | 0.510998 | 7.4:-45034292 | None:intergenic |
| GAGGAACCTTACGGAGGCGG+CGG | 0.520521 | 7.4:-45034311 | None:intergenic |
| GAAGCGGCGGAGGAACCTTA+CGG | 0.521844 | 7.4:-45034320 | None:intergenic |
| TGTCCGGACACCAACGGCGG+TGG | 0.531487 | 7.4:-45034214 | None:intergenic |
| CGAAGCCTAGAATTTCCAAC+GGG | 0.536187 | 7.4:-45034363 | None:intergenic |
| CGCAAGGACACTGCTCCCGT+TGG | 0.536478 | 7.4:+45034348 | MS.gene66082:CDS |
| CCAAGTATCATTCATACCCC+TGG | 0.539760 | 7.4:+45036827 | MS.gene66082:CDS |
| GCGGAGATTTCTGGAGAGCA+AGG | 0.540908 | 7.4:-45034248 | None:intergenic |
| CGGAGATTTCTGGAGAGCAA+GGG | 0.542546 | 7.4:-45034247 | None:intergenic |
| TCCGCCGCTTCCACCTCGCA+AGG | 0.544264 | 7.4:+45034332 | MS.gene66082:CDS |
| CACACCTTGTAGTTTAATCA+GGG | 0.545905 | 7.4:+45036802 | MS.gene66082:CDS |
| TTTGTCTTGTGGTTGAACCA+GGG | 0.547862 | 7.4:-45036844 | None:intergenic |
| GATTACGGCGGCGACATCGC+CGG | 0.550115 | 7.4:-45034172 | None:intergenic |
| ACGGAGCTGGAGGAAGGAAG+AGG | 0.555343 | 7.4:-45034286 | None:intergenic |
| GGCACGTGTCCGGACACCAA+CGG | 0.561914 | 7.4:-45034220 | None:intergenic |
| GGACCCATTCGTATCGTCCT+GGG | 0.567033 | 7.4:-45037199 | None:intergenic |
| CATTCGTATCGTCCTGGGAG+AGG | 0.568346 | 7.4:-45037194 | None:intergenic |
| GGCGGCGGCTACGGAGCTGG+AGG | 0.568674 | 7.4:-45034296 | None:intergenic |
| TCTCCCAGGACGATACGAAT+GGG | 0.569573 | 7.4:+45037196 | MS.gene66082:CDS |
| AGTGGATGAATTCTTTGCCT+TGG | 0.571053 | 7.4:+45036922 | MS.gene66082:CDS |
| ATGGGTCCCTGTACTTCCCT+AGG | 0.571550 | 7.4:+45037214 | MS.gene66082:CDS |
| CTCTCCCAGGACGATACGAA+TGG | 0.575529 | 7.4:+45037195 | MS.gene66082:CDS |
| TCCTTGCGAGGTGGAAGCGG+CGG | 0.577776 | 7.4:-45034333 | None:intergenic |
| ACGGGAGCAGTGTCCTTGCG+AGG | 0.590790 | 7.4:-45034345 | None:intergenic |
| GTGAATGATGTACCTCTCCC+AGG | 0.597885 | 7.4:+45037182 | MS.gene66082:CDS |
| ATTCAATGGGTAAATACATG+AGG | 0.605964 | 7.4:+45034136 | None:intergenic |
| GCGGTTCGTCCTTTGTCTTG+TGG | 0.610884 | 7.4:-45036855 | None:intergenic |
| CCGTCTCACACCACCGCCGT+TGG | 0.622789 | 7.4:+45034204 | MS.gene66082:CDS |
| TACGGCGGCGACATCGCCGG+TGG | 0.623097 | 7.4:-45034169 | None:intergenic |
| ATGAGGAAATCCAAAACCAC+CGG | 0.623986 | 7.4:+45034153 | MS.gene66082:CDS |
| GCATGTGTTCTTGAATAGTG+CGG | 0.632168 | 7.4:-45036874 | None:intergenic |
| GGATCCCTGATTAAACTACA+AGG | 0.636161 | 7.4:-45036806 | None:intergenic |
| CCAACGGCGGTGGTGTGAGA+CGG | 0.637228 | 7.4:-45034204 | None:intergenic |
| ACGAAGCCTAGAATTTCCAA+CGG | 0.645481 | 7.4:-45034364 | None:intergenic |
| CTGGTTCAACCACAAGACAA+AGG | 0.647709 | 7.4:+45036846 | MS.gene66082:CDS |
| GAGGAATCAGAGTGATTCGG+CGG | 0.652108 | 7.4:-45034267 | None:intergenic |
| GGAGCAGTGTCCTTGCGAGG+TGG | 0.670925 | 7.4:-45034342 | None:intergenic |
| GCGGCGGAGGAACCTTACGG+AGG | 0.674543 | 7.4:-45034317 | None:intergenic |
| ACGTGTCCGGACACCAACGG+CGG | 0.703244 | 7.4:-45034217 | None:intergenic |
| GATGAGAATGAGAATCGCGA+TGG | 0.711593 | 7.4:+45034426 | MS.gene66082:CDS |
| GCTGGTCCTAGGGAAGTACA+GGG | 0.716168 | 7.4:-45037220 | None:intergenic |
| CGGTGATTCCATGATTACGG+CGG | 0.758790 | 7.4:-45034184 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAGTGAAAAAATAAAA+TGG | - | chr7.4:45036612-45036631 | None:intergenic | 10.0% |
| !! | AATTCTTAAAATTAAAACAT+GGG | - | chr7.4:45037013-45037032 | None:intergenic | 10.0% |
| !! | CAAAAAAATTACTATTAAAA+TGG | - | chr7.4:45036757-45036776 | None:intergenic | 10.0% |
| !!! | ATTAGAATTTTTCAAATAAT+AGG | + | chr7.4:45034841-45034860 | MS.gene66082:intron | 10.0% |
| !!! | TGTAAAAAATTGTTTTTTAA+TGG | - | chr7.4:45034892-45034911 | None:intergenic | 10.0% |
| !!! | TTAAAAAACAATTTTTTACA+TGG | + | chr7.4:45034892-45034911 | MS.gene66082:intron | 10.0% |
| !!! | TTAGAATTTTTCAAATAATA+GGG | + | chr7.4:45034842-45034861 | MS.gene66082:intron | 10.0% |
| !! | ATTCTTAAAATTAAAACATG+GGG | - | chr7.4:45037012-45037031 | None:intergenic | 15.0% |
| !! | GAATTCTTAAAATTAAAACA+TGG | - | chr7.4:45037014-45037033 | None:intergenic | 15.0% |
| !! | TAGGAAAAAATTAAAAGTAA+TGG | - | chr7.4:45036711-45036730 | None:intergenic | 15.0% |
| !!! | ATTTCTTTTTTTTTATTGTG+TGG | + | chr7.4:45035070-45035089 | MS.gene66082:intron | 15.0% |
| !!! | ATTTTTTAGAAATAACACAA+AGG | - | chr7.4:45034585-45034604 | None:intergenic | 15.0% |
| !!! | TTGCTTTTTATTTTTTGTTT+TGG | + | chr7.4:45037075-45037094 | MS.gene66082:intron | 15.0% |
| !!! | TTTTTTAGAAATAACACAAA+GGG | - | chr7.4:45034584-45034603 | None:intergenic | 15.0% |
| !! | AAAACATTAAACGAAAATCT+AGG | - | chr7.4:45035105-45035124 | None:intergenic | 20.0% |
| !! | AAACATTAAACGAAAATCTA+GGG | - | chr7.4:45035104-45035123 | None:intergenic | 20.0% |
| !! | ACAAAATGGAAAATAATTTC+TGG | + | chr7.4:45035480-45035499 | MS.gene66082:intron | 20.0% |
| !! | CAAAATGGAAAATAATTTCT+GGG | + | chr7.4:45035481-45035500 | MS.gene66082:intron | 20.0% |
| !! | TAGTAAAAATCATTTCATCT+TGG | - | chr7.4:45036317-45036336 | None:intergenic | 20.0% |
| !!! | ATGTTTCTATTTTTGTATGA+AGG | + | chr7.4:45034691-45034710 | MS.gene66082:intron | 20.0% |
| !!! | CTACTTTTAAAGTAGTTATT+GGG | + | chr7.4:45035533-45035552 | MS.gene66082:intron | 20.0% |
| !!! | GAAATTATTTTCCATTTTGT+TGG | - | chr7.4:45035480-45035499 | None:intergenic | 20.0% |
| !!! | GTATAATTACTCTTCTATTT+TGG | + | chr7.4:45034509-45034528 | MS.gene66082:intron | 20.0% |
| !!! | TACTTTTAAAGTAGTTATTG+GGG | + | chr7.4:45035534-45035553 | MS.gene66082:intron | 20.0% |
| !!! | TGGTTTTTAGAATTTTCATT+TGG | + | chr7.4:45034660-45034679 | MS.gene66082:intron | 20.0% |
| !!! | TTTTTAGAAATAACACAAAG+GGG | - | chr7.4:45034583-45034602 | None:intergenic | 20.0% |
| ! | AAAAAAAAGCAACTTTGCAT+TGG | + | chr7.4:45035767-45035786 | MS.gene66082:intron | 25.0% |
| ! | AAAAAATACAAGGAAAGAGA+TGG | - | chr7.4:45036472-45036491 | None:intergenic | 25.0% |
| ! | AAAAAGCTGAAGAAGTAAAA+AGG | - | chr7.4:45034937-45034956 | None:intergenic | 25.0% |
| ! | AAAATAACACAAAAAACGAG+TGG | - | chr7.4:45035648-45035667 | None:intergenic | 25.0% |
| ! | AAACACATCAAACTGAAAAT+AGG | - | chr7.4:45036408-45036427 | None:intergenic | 25.0% |
| ! | AACATTAAACGAAAATCTAG+GGG | - | chr7.4:45035103-45035122 | None:intergenic | 25.0% |
| ! | AATATATGACTAATTGAGGA+AGG | - | chr7.4:45035901-45035920 | None:intergenic | 25.0% |
| ! | AATTTAATCCTCAAAACTGT+AGG | - | chr7.4:45037049-45037068 | None:intergenic | 25.0% |
| ! | ATACAAACAACATAACACAT+TGG | - | chr7.4:45037139-45037158 | None:intergenic | 25.0% |
| ! | ATTTAATCCTCAAAACTGTA+GGG | - | chr7.4:45037048-45037067 | None:intergenic | 25.0% |
| ! | CAAGCAACAAAAAAAATACA+AGG | - | chr7.4:45036482-45036501 | None:intergenic | 25.0% |
| ! | CAGAATCTTAAAATCCAAAA+GGG | - | chr7.4:45035942-45035961 | None:intergenic | 25.0% |
| ! | GGTTAATATATGACTAATTG+AGG | - | chr7.4:45035905-45035924 | None:intergenic | 25.0% |
| ! | TCAGAATCTTAAAATCCAAA+AGG | - | chr7.4:45035943-45035962 | None:intergenic | 25.0% |
| ! | TGATTACATAACCAACAAAA+TGG | + | chr7.4:45035466-45035485 | MS.gene66082:intron | 25.0% |
| !! | CATTATAGAGTCATATTTTG+AGG | + | chr7.4:45035609-45035628 | MS.gene66082:intron | 25.0% |
| !! | CCAATAACTACTTTAAAAGT+AGG | - | chr7.4:45035535-45035554 | None:intergenic | 25.0% |
| !! | GACAAATCATATTTTACGTT+AGG | - | chr7.4:45036144-45036163 | None:intergenic | 25.0% |
| !! | TTTAACTTTCATGTGATTGT+TGG | + | chr7.4:45035013-45035032 | MS.gene66082:intron | 25.0% |
| !!! | ACTTTTAAAGTAGTTATTGG+GGG | + | chr7.4:45035535-45035554 | MS.gene66082:intron | 25.0% |
| !!! | ATGCAAAGTTGCTTTTTTTT+TGG | - | chr7.4:45035767-45035786 | None:intergenic | 25.0% |
| !!! | CCTACTTTTAAAGTAGTTAT+TGG | + | chr7.4:45035532-45035551 | MS.gene66082:intron | 25.0% |
| !!! | TGCAAAGTTGCTTTTTTTTT+GGG | - | chr7.4:45035766-45035785 | None:intergenic | 25.0% |
| !!! | TTATGTTGTTTGTATTTTGC+AGG | + | chr7.4:45037144-45037163 | MS.gene66082:intron | 25.0% |
| !!! | TTTTTTACATGGACATACAA+AGG | + | chr7.4:45034903-45034922 | MS.gene66082:intron | 25.0% |
| AAAAGGGATTCTAATATCTC+AGG | - | chr7.4:45035926-45035945 | None:intergenic | 30.0% | |
| AACGAGTGGAAATTACAAAA+TGG | + | chr7.4:45035691-45035710 | MS.gene66082:intron | 30.0% | |
| ATCTCTCAAGAGTTAATCTA+AGG | - | chr7.4:45035969-45035988 | None:intergenic | 30.0% | |
| ATGTGTTTCAGATTTCTGTT+TGG | + | chr7.4:45036420-45036439 | MS.gene66082:intron | 30.0% | |
| CACTCAAAAACTCTTCAAAT+TGG | - | chr7.4:45036577-45036596 | None:intergenic | 30.0% | |
| CTATTAAAATGGCTTAGCAA+AGG | - | chr7.4:45036746-45036765 | None:intergenic | 30.0% | |
| CTTCTTACATTAATGAGTTG+TGG | + | chr7.4:45035390-45035409 | MS.gene66082:intron | 30.0% | |
| GAAAAGTAACTGGCATTTAT+TGG | - | chr7.4:45036529-45036548 | None:intergenic | 30.0% | |
| GAAATTCATAGCAGAGAATA+GGG | + | chr7.4:45034719-45034738 | MS.gene66082:intron | 30.0% | |
| GAATGTTCGGATGAAAAATT+GGG | + | chr7.4:45034387-45034406 | MS.gene66082:CDS | 30.0% | |
| GCAAAGGAATCTAATAGAAT+AGG | - | chr7.4:45036730-45036749 | None:intergenic | 30.0% | |
| GTCATAGAAAATGCAAATGT+TGG | - | chr7.4:45036686-45036705 | None:intergenic | 30.0% | |
| TGAAATTCATAGCAGAGAAT+AGG | + | chr7.4:45034718-45034737 | MS.gene66082:intron | 30.0% | |
| TGAATGTTCGGATGAAAAAT+TGG | + | chr7.4:45034386-45034405 | MS.gene66082:CDS | 30.0% | |
| TTTAATCCTCAAAACTGTAG+GGG | - | chr7.4:45037047-45037066 | None:intergenic | 30.0% | |
| TTTGTCCAATCTTCATTAAC+CGG | + | chr7.4:45036158-45036177 | MS.gene66082:intron | 30.0% | |
| ! | ATTTTCCACTCGTCTTTTTA+AGG | + | chr7.4:45035663-45035682 | MS.gene66082:intron | 30.0% |
| ! | GTATAGTTCTGTTAGTACAA+AGG | + | chr7.4:45035156-45035175 | MS.gene66082:intron | 30.0% |
| ! | TGAGATATTAGAATCCCTTT+TGG | + | chr7.4:45035925-45035944 | MS.gene66082:intron | 30.0% |
| ! | TTTTCATGAGCGAATATTTC+TGG | + | chr7.4:45036211-45036230 | MS.gene66082:intron | 30.0% |
| ! | TTTTCCACTCGTCTTTTTAA+GGG | + | chr7.4:45035664-45035683 | MS.gene66082:intron | 30.0% |
| !! | GTTGCATATTAGTGTTGATT+TGG | + | chr7.4:45034640-45034659 | MS.gene66082:intron | 30.0% |
| !! | TTTTTAAGGGAAAAAACGAG+TGG | + | chr7.4:45035677-45035696 | MS.gene66082:intron | 30.0% |
| !!! | GTATTTTTTATCTGCTGCAT+TGG | + | chr7.4:45035275-45035294 | MS.gene66082:intron | 30.0% |
| AGGTGTGTCATATACATACA+TGG | + | chr7.4:45036380-45036399 | MS.gene66082:intron | 35.0% | |
| ATCCCAGATGAATAGTAAAC+AGG | - | chr7.4:45036022-45036041 | None:intergenic | 35.0% | |
| CACACCTTGTAGTTTAATCA+GGG | + | chr7.4:45036802-45036821 | MS.gene66082:CDS | 35.0% | |
| CATTCAAGCTGTCAGTAAAT+TGG | - | chr7.4:45036186-45036205 | None:intergenic | 35.0% | |
| GAAAATTTCGCAGAGATTGA+TGG | + | chr7.4:45034477-45034496 | MS.gene66082:CDS | 35.0% | |
| GCAGCAACAAGCATTATTTA+TGG | + | chr7.4:45036952-45036971 | MS.gene66082:CDS | 35.0% | |
| GGTGTGTCATATACATACAT+GGG | + | chr7.4:45036381-45036400 | MS.gene66082:intron | 35.0% | |
| GTGTGTCATATACATACATG+GGG | + | chr7.4:45036382-45036401 | MS.gene66082:intron | 35.0% | |
| TACTCCAACAACTTATGAAG+TGG | + | chr7.4:45036904-45036923 | MS.gene66082:CDS | 35.0% | |
| TCATCCACTTCATAAGTTGT+TGG | - | chr7.4:45036911-45036930 | None:intergenic | 35.0% | |
| TCCCAGATGAATAGTAAACA+GGG | - | chr7.4:45036021-45036040 | None:intergenic | 35.0% | |
| TGCAGTGAATGAGAAAGATA+TGG | + | chr7.4:45036446-45036465 | MS.gene66082:intron | 35.0% | |
| ! | TAACTTCTGTGACTTGTGAT+AGG | + | chr7.4:45035193-45035212 | MS.gene66082:intron | 35.0% |
| ! | TCCTACTCTAGAAAAGTAAC+TGG | - | chr7.4:45036539-45036558 | None:intergenic | 35.0% |
| ! | TTTTCCCTTAAAAAGACGAG+TGG | - | chr7.4:45035671-45035690 | None:intergenic | 35.0% |
| AACACGACACATGAGAGTTA+TGG | - | chr7.4:45036355-45036374 | None:intergenic | 40.0% | |
| ACGAAGCCTAGAATTTCCAA+CGG | - | chr7.4:45034367-45034386 | None:intergenic | 40.0% | |
| AGACGGTGATTCCATGATTA+CGG | - | chr7.4:45034190-45034209 | None:intergenic | 40.0% | |
| AGCTGTCAGTAAATTGGAAC+CGG | - | chr7.4:45036180-45036199 | None:intergenic | 40.0% | |
| AGGAAGGCAAATGCTAACTT+GGG | - | chr7.4:45035885-45035904 | None:intergenic | 40.0% | |
| AGTGGATGAATTCTTTGCCT+TGG | + | chr7.4:45036922-45036941 | MS.gene66082:CDS | 40.0% | |
| ATAGTAAACAGGGGCAATCA+AGG | - | chr7.4:45036011-45036030 | None:intergenic | 40.0% | |
| ATGAGGAAATCCAAAACCAC+CGG | + | chr7.4:45034153-45034172 | MS.gene66082:CDS | 40.0% | |
| CATTCACTTGTCGAGTAAGT+TGG | + | chr7.4:45036065-45036084 | MS.gene66082:intron | 40.0% | |
| CATTTCATCTTGGCTGCTTA+TGG | - | chr7.4:45036307-45036326 | None:intergenic | 40.0% | |
| CCCAGATGAATAGTAAACAG+GGG | - | chr7.4:45036020-45036039 | None:intergenic | 40.0% | |
| CCCCTGTTTACTATTCATCT+GGG | + | chr7.4:45036017-45036036 | MS.gene66082:intron | 40.0% | |
| GAAGAGGAATCAGAGTGATT+CGG | - | chr7.4:45034273-45034292 | None:intergenic | 40.0% | |
| GCACACCTTGTAGTTTAATC+AGG | + | chr7.4:45036801-45036820 | MS.gene66082:CDS | 40.0% | |
| GCATGTGTTCTTGAATAGTG+CGG | - | chr7.4:45036877-45036896 | None:intergenic | 40.0% | |
| GGATCCCTGATTAAACTACA+AGG | - | chr7.4:45036809-45036828 | None:intergenic | 40.0% | |
| GGTACCACTGAATGAAAGAT+TGG | + | chr7.4:45036086-45036105 | MS.gene66082:intron | 40.0% | |
| GTGGTACCAATAATGCAGAA+GGG | + | chr7.4:45035409-45035428 | MS.gene66082:intron | 40.0% | |
| TCAACACCCTTCTGCATTAT+TGG | - | chr7.4:45035418-45035437 | None:intergenic | 40.0% | |
| TGAGCATGAGCGAATATTTC+TGG | + | chr7.4:45036241-45036260 | MS.gene66082:intron | 40.0% | |
| TGGAACCGGTTAATGAAGAT+TGG | - | chr7.4:45036166-45036185 | None:intergenic | 40.0% | |
| TGTGGTACCAATAATGCAGA+AGG | + | chr7.4:45035408-45035427 | MS.gene66082:intron | 40.0% | |
| TTCTAGGCTTCGTGAATGTT+CGG | + | chr7.4:45034374-45034393 | MS.gene66082:CDS | 40.0% | |
| TTTGTCTTGTGGTTGAACCA+GGG | - | chr7.4:45036847-45036866 | None:intergenic | 40.0% | |
| ! | CAGAGATTGATGGTAGAGAT+AGG | + | chr7.4:45034487-45034506 | MS.gene66082:CDS | 40.0% |
| ! | TTCGCTGTTGAAGGTTCTTT+TGG | + | chr7.4:45034453-45034472 | MS.gene66082:CDS | 40.0% |
| !! | ATTCATCTGGGATTTTCTGC+AGG | + | chr7.4:45036029-45036048 | MS.gene66082:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTAA+GGG | + | chr7.4:45035726-45035745 | MS.gene66082:intron | 40.0% |
| !! | TCATGTTAACTTGTGCCCTA+AGG | + | chr7.4:45035725-45035744 | MS.gene66082:intron | 40.0% |
| !!! | GCCAGTTACTTTTCTAGAGT+AGG | + | chr7.4:45036535-45036554 | MS.gene66082:intron | 40.0% |
| ACTGTGTGATAACTGCAGAC+AGG | - | chr7.4:45036636-45036655 | None:intergenic | 45.0% | |
| AGGGCACAAGTTAACATGAG+AGG | - | chr7.4:45035724-45035743 | None:intergenic | 45.0% | |
| ATCCTCAAAACTGTAGGGGT+TGG | - | chr7.4:45037043-45037062 | None:intergenic | 45.0% | |
| CCAAGTATCATTCATACCCC+TGG | + | chr7.4:45036827-45036846 | MS.gene66082:CDS | 45.0% | |
| CGAAGCCTAGAATTTCCAAC+GGG | - | chr7.4:45034366-45034385 | None:intergenic | 45.0% | |
| CTCATGTGTCGTGTTAGCAA+AGG | + | chr7.4:45036360-45036379 | MS.gene66082:intron | 45.0% | |
| CTCCTTAACATGTGCCCTTA+GGG | - | chr7.4:45035743-45035762 | None:intergenic | 45.0% | |
| CTGCAGTTATCACACAGTTC+TGG | + | chr7.4:45036638-45036657 | MS.gene66082:intron | 45.0% | |
| CTGGTTCAACCACAAGACAA+AGG | + | chr7.4:45036846-45036865 | MS.gene66082:CDS | 45.0% | |
| CTTTGTCTTGTGGTTGAACC+AGG | - | chr7.4:45036848-45036867 | None:intergenic | 45.0% | |
| GAGGAAGGCAAATGCTAACT+TGG | - | chr7.4:45035886-45035905 | None:intergenic | 45.0% | |
| GATGAGAATGAGAATCGCGA+TGG | + | chr7.4:45034426-45034445 | MS.gene66082:CDS | 45.0% | |
| GATGGTGATTTCGCTGTTGA+AGG | + | chr7.4:45034444-45034463 | MS.gene66082:CDS | 45.0% | |
| GCCCCTGTTTACTATTCATC+TGG | + | chr7.4:45036016-45036035 | MS.gene66082:intron | 45.0% | |
| GCGTCCAATCTTTCATTCAG+TGG | - | chr7.4:45036093-45036112 | None:intergenic | 45.0% | |
| TCCTTAACATGTGCCCTTGA+GGG | + | chr7.4:45035859-45035878 | MS.gene66082:intron | 45.0% | |
| TTCCTTAACATGTGCCCTTG+AGG | + | chr7.4:45035858-45035877 | MS.gene66082:intron | 45.0% | |
| TTGTCTTGTGGTTGAACCAG+GGG | - | chr7.4:45036846-45036865 | None:intergenic | 45.0% | |
| ! | CCAGGGGTATGAATGATACT+TGG | - | chr7.4:45036830-45036849 | None:intergenic | 45.0% |
| !! | ATCTGGGATTTTCTGCAGGT+AGG | + | chr7.4:45036033-45036052 | MS.gene66082:intron | 45.0% |
| !! | TCTGGGATTTTCTGCAGGTA+GGG | + | chr7.4:45036034-45036053 | MS.gene66082:intron | 45.0% |
| !! | TGTGATTGTTGGTAGCACTG+AGG | + | chr7.4:45035134-45035153 | MS.gene66082:intron | 45.0% |
| !! | TTTCTGGAGAGCAAGGGTTT+TGG | - | chr7.4:45034244-45034263 | None:intergenic | 45.0% |
| AATGCTAACTTGGGCCCTCA+AGG | - | chr7.4:45035876-45035895 | None:intergenic | 50.0% | |
| ATGCTAACTTGGGCCCTCAA+GGG | - | chr7.4:45035875-45035894 | None:intergenic | 50.0% | |
| CACATGAGAGTTATGGCTGC+TGG | - | chr7.4:45036348-45036367 | None:intergenic | 50.0% | |
| CGGTGATTCCATGATTACGG+CGG | - | chr7.4:45034187-45034206 | None:intergenic | 50.0% | |
| CTGCTCCCGTTGGAAATTCT+AGG | + | chr7.4:45034358-45034377 | MS.gene66082:CDS | 50.0% | |
| GCTCCTTAACATGTGCCCTT+AGG | - | chr7.4:45035744-45035763 | None:intergenic | 50.0% | |
| GTGAATGATGTACCTCTCCC+AGG | + | chr7.4:45037182-45037201 | MS.gene66082:CDS | 50.0% | |
| TCTCCCAGGACGATACGAAT+GGG | + | chr7.4:45037196-45037215 | MS.gene66082:CDS | 50.0% | |
| ! | AGTGATTCGGCGGAGATTTC+TGG | - | chr7.4:45034260-45034279 | None:intergenic | 50.0% |
| ! | CGGAGATTTCTGGAGAGCAA+GGG | - | chr7.4:45034250-45034269 | None:intergenic | 50.0% |
| ! | GAGGAATCAGAGTGATTCGG+CGG | - | chr7.4:45034270-45034289 | None:intergenic | 50.0% |
| ! | GTCCAACCCCTACAGTTTTG+AGG | + | chr7.4:45037038-45037057 | MS.gene66082:intron | 50.0% |
| ! | TGCCCTAAGGGCACATGTTA+AGG | + | chr7.4:45035738-45035757 | MS.gene66082:intron | 50.0% |
| ! | TTGTTGCTGCTTCTCTGCCA+AGG | - | chr7.4:45036942-45036961 | None:intergenic | 50.0% |
| CATTCGTATCGTCCTGGGAG+AGG | - | chr7.4:45037197-45037216 | None:intergenic | 55.0% | |
| CTCTCCCAGGACGATACGAA+TGG | + | chr7.4:45037195-45037214 | MS.gene66082:CDS | 55.0% | |
| GAGACAAGCCCTGACTCAGT+GGG | - | chr7.4:45036507-45036526 | None:intergenic | 55.0% | |
| GCGGTTCGTCCTTTGTCTTG+TGG | - | chr7.4:45036858-45036877 | None:intergenic | 55.0% | |
| GGACCCATTCGTATCGTCCT+GGG | - | chr7.4:45037202-45037221 | None:intergenic | 55.0% | |
| TGCTTGAGCCCACTGAGTCA+GGG | + | chr7.4:45036496-45036515 | MS.gene66082:intron | 55.0% | |
| TTGCTTGAGCCCACTGAGTC+AGG | + | chr7.4:45036495-45036514 | MS.gene66082:intron | 55.0% | |
| ! | GCCCTCAAGGGCACATGTTA+AGG | - | chr7.4:45035863-45035882 | None:intergenic | 55.0% |
| ! | GCGGAGATTTCTGGAGAGCA+AGG | - | chr7.4:45034251-45034270 | None:intergenic | 55.0% |
| !! | CAAGGGTTTTGGCACGTGTC+CGG | - | chr7.4:45034233-45034252 | None:intergenic | 55.0% |
| ACGGAGCTGGAGGAAGGAAG+AGG | - | chr7.4:45034289-45034308 | None:intergenic | 60.0% | |
| CGATGTCGCCGCCGTAATCA+TGG | + | chr7.4:45034176-45034195 | MS.gene66082:CDS | 60.0% | |
| GAAGCGGCGGAGGAACCTTA+CGG | - | chr7.4:45034323-45034342 | None:intergenic | 60.0% | |
| GGAGACAAGCCCTGACTCAG+TGG | - | chr7.4:45036508-45036527 | None:intergenic | 60.0% | |
| GGGACCCATTCGTATCGTCC+TGG | - | chr7.4:45037203-45037222 | None:intergenic | 60.0% | |
| GTGTCCTTGCGAGGTGGAAG+CGG | - | chr7.4:45034339-45034358 | None:intergenic | 60.0% | |
| ACGGGAGCAGTGTCCTTGCG+AGG | - | chr7.4:45034348-45034367 | None:intergenic | 65.0% | |
| ACGTGTCCGGACACCAACGG+CGG | - | chr7.4:45034220-45034239 | None:intergenic | 65.0% | |
| CCAACGGCGGTGGTGTGAGA+CGG | - | chr7.4:45034207-45034226 | None:intergenic | 65.0% | |
| CGCAAGGACACTGCTCCCGT+TGG | + | chr7.4:45034348-45034367 | MS.gene66082:CDS | 65.0% | |
| GAGGAACCTTACGGAGGCGG+CGG | - | chr7.4:45034314-45034333 | None:intergenic | 65.0% | |
| GATTACGGCGGCGACATCGC+CGG | - | chr7.4:45034175-45034194 | None:intergenic | 65.0% | |
| GCGGAGGAACCTTACGGAGG+CGG | - | chr7.4:45034317-45034336 | None:intergenic | 65.0% | |
| GGAGCAGTGTCCTTGCGAGG+TGG | - | chr7.4:45034345-45034364 | None:intergenic | 65.0% | |
| GGCACGTGTCCGGACACCAA+CGG | - | chr7.4:45034223-45034242 | None:intergenic | 65.0% | |
| TCCTTGCGAGGTGGAAGCGG+CGG | - | chr7.4:45034336-45034355 | None:intergenic | 65.0% | |
| ! | ACACCACCGCCGTTGGTGTC+CGG | + | chr7.4:45034211-45034230 | MS.gene66082:CDS | 65.0% |
| ! | GGCGACATCGCCGGTGGTTT+TGG | - | chr7.4:45034166-45034185 | None:intergenic | 65.0% |
| CCGTCTCACACCACCGCCGT+TGG | + | chr7.4:45034204-45034223 | MS.gene66082:CDS | 70.0% | |
| CCTTACGGAGGCGGCGGCTA+CGG | - | chr7.4:45034308-45034327 | None:intergenic | 70.0% | |
| GCGGCGGAGGAACCTTACGG+AGG | - | chr7.4:45034320-45034339 | None:intergenic | 70.0% | |
| GCGGCTACGGAGCTGGAGGA+AGG | - | chr7.4:45034295-45034314 | None:intergenic | 70.0% | |
| TCCGCCGCTTCCACCTCGCA+AGG | + | chr7.4:45034332-45034351 | MS.gene66082:CDS | 70.0% | |
| TGTCCGGACACCAACGGCGG+TGG | - | chr7.4:45034217-45034236 | None:intergenic | 70.0% | |
| TTGCGAGGTGGAAGCGGCGG+AGG | - | chr7.4:45034333-45034352 | None:intergenic | 70.0% | |
| CCGTAGCCGCCGCCTCCGTA+AGG | + | chr7.4:45034305-45034324 | MS.gene66082:CDS | 75.0% | |
| TACGGCGGCGACATCGCCGG+TGG | - | chr7.4:45034172-45034191 | None:intergenic | 75.0% | |
| ! | GGAGGCGGCGGCTACGGAGC+TGG | - | chr7.4:45034302-45034321 | None:intergenic | 80.0% |
| ! | GGCGGCGGCTACGGAGCTGG+AGG | - | chr7.4:45034299-45034318 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 45034141 | 45037235 | 45034141 | ID=MS.gene66082 |
| chr7.4 | mRNA | 45034141 | 45037235 | 45034141 | ID=MS.gene66082.t1;Parent=MS.gene66082 |
| chr7.4 | exon | 45034141 | 45034508 | 45034141 | ID=MS.gene66082.t1.exon1;Parent=MS.gene66082.t1 |
| chr7.4 | CDS | 45034141 | 45034508 | 45034141 | ID=cds.MS.gene66082.t1;Parent=MS.gene66082.t1 |
| chr7.4 | exon | 45036787 | 45036978 | 45036787 | ID=MS.gene66082.t1.exon2;Parent=MS.gene66082.t1 |
| chr7.4 | CDS | 45036787 | 45036978 | 45036787 | ID=cds.MS.gene66082.t1;Parent=MS.gene66082.t1 |
| chr7.4 | exon | 45037166 | 45037235 | 45037166 | ID=MS.gene66082.t1.exon3;Parent=MS.gene66082.t1 |
| chr7.4 | CDS | 45037166 | 45037235 | 45037166 | ID=cds.MS.gene66082.t1;Parent=MS.gene66082.t1 |
| Gene Sequence |
| Protein sequence |
