Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67098.t1 | XP_003589236.1 | 98.6 | 417 | 6 | 0 | 1 | 417 | 1 | 417 | 3.00E-236 | 827.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67098.t1 | O48723 | 66.0 | 394 | 131 | 3 | 12 | 405 | 10 | 400 | 3.5e-145 | 516.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67098.t1 | G7I4H1 | 98.6 | 417 | 6 | 0 | 1 | 417 | 1 | 417 | 2.1e-236 | 827.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050363 | MS.gene67098 | 0.812452 | 4.21E-51 | -1.69E-46 |
| MS.gene050381 | MS.gene67098 | 0.837369 | 5.41E-57 | -1.69E-46 |
| MS.gene050883 | MS.gene67098 | 0.821843 | 3.26E-53 | -1.69E-46 |
| MS.gene051127 | MS.gene67098 | 0.831768 | 1.38E-55 | -1.69E-46 |
| MS.gene053488 | MS.gene67098 | 0.815992 | 6.96E-52 | -1.69E-46 |
| MS.gene053561 | MS.gene67098 | 0.820022 | 8.54E-53 | -1.69E-46 |
| MS.gene054708 | MS.gene67098 | 0.808131 | 3.60E-50 | -1.69E-46 |
| MS.gene055124 | MS.gene67098 | 0.823251 | 1.53E-53 | -1.69E-46 |
| MS.gene055154 | MS.gene67098 | 0.820923 | 5.31E-53 | -1.69E-46 |
| MS.gene056310 | MS.gene67098 | 0.808242 | 3.41E-50 | -1.69E-46 |
| MS.gene056313 | MS.gene67098 | 0.825126 | 5.56E-54 | -1.69E-46 |
| MS.gene056408 | MS.gene67098 | 0.802147 | 6.44E-49 | -1.69E-46 |
| MS.gene058840 | MS.gene67098 | 0.822447 | 2.36E-53 | -1.69E-46 |
| MS.gene059691 | MS.gene67098 | 0.807091 | 5.99E-50 | -1.69E-46 |
| MS.gene059694 | MS.gene67098 | 0.812333 | 4.47E-51 | -1.69E-46 |
| MS.gene059697 | MS.gene67098 | 0.831104 | 2.02E-55 | -1.69E-46 |
| MS.gene060482 | MS.gene67098 | -0.815568 | 8.65E-52 | -1.69E-46 |
| MS.gene060808 | MS.gene67098 | 0.809547 | 1.79E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67098.t1 | MTR_1g019940 | 98.561 | 417 | 6 | 0 | 1 | 417 | 1 | 417 | 0.0 | 852 |
| MS.gene67098.t1 | MTR_1g019940 | 98.321 | 417 | 5 | 1 | 1 | 417 | 1 | 415 | 0.0 | 844 |
| MS.gene67098.t1 | MTR_3g101410 | 78.164 | 403 | 86 | 2 | 5 | 407 | 4 | 404 | 0.0 | 643 |
| MS.gene67098.t1 | MTR_3g101400 | 76.427 | 403 | 93 | 2 | 5 | 407 | 4 | 404 | 0.0 | 633 |
| MS.gene67098.t1 | MTR_1g019940 | 97.987 | 298 | 6 | 0 | 120 | 417 | 1 | 298 | 0.0 | 608 |
| MS.gene67098.t1 | MTR_5g017670 | 57.560 | 377 | 155 | 3 | 19 | 394 | 14 | 386 | 1.32e-158 | 453 |
| MS.gene67098.t1 | MTR_5g017680 | 55.076 | 394 | 170 | 4 | 9 | 400 | 1 | 389 | 1.99e-158 | 452 |
| MS.gene67098.t1 | MTR_8g007040 | 43.237 | 414 | 195 | 13 | 11 | 410 | 22 | 409 | 9.33e-100 | 304 |
| MS.gene67098.t1 | MTR_8g007140 | 46.329 | 395 | 174 | 8 | 10 | 399 | 22 | 383 | 1.52e-94 | 290 |
| MS.gene67098.t1 | MTR_8g007090 | 42.317 | 397 | 200 | 11 | 11 | 399 | 22 | 397 | 5.11e-93 | 286 |
| MS.gene67098.t1 | MTR_8g007095 | 42.065 | 397 | 201 | 11 | 11 | 399 | 22 | 397 | 1.03e-92 | 286 |
| MS.gene67098.t1 | MTR_8g007125 | 42.998 | 407 | 201 | 11 | 11 | 410 | 22 | 404 | 3.75e-88 | 274 |
| MS.gene67098.t1 | MTR_8g007065 | 40.441 | 408 | 212 | 11 | 10 | 409 | 21 | 405 | 5.99e-85 | 266 |
| MS.gene67098.t1 | MTR_1g095165 | 28.501 | 407 | 253 | 14 | 21 | 412 | 75 | 458 | 3.49e-37 | 141 |
| MS.gene67098.t1 | MTR_7g094940 | 28.736 | 261 | 147 | 9 | 23 | 269 | 32 | 267 | 4.81e-25 | 105 |
| MS.gene67098.t1 | MTR_1g072190 | 25.513 | 341 | 217 | 12 | 23 | 358 | 32 | 340 | 6.26e-25 | 105 |
| MS.gene67098.t1 | MTR_2g029510 | 27.190 | 331 | 189 | 12 | 6 | 330 | 54 | 338 | 1.91e-20 | 93.2 |
| MS.gene67098.t1 | MTR_0368s0010 | 26.545 | 275 | 173 | 11 | 144 | 412 | 43 | 294 | 1.30e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67098.t1 | AT2G26560 | 66.329 | 395 | 128 | 4 | 12 | 405 | 10 | 400 | 0.0 | 527 |
| MS.gene67098.t1 | AT4G37070 | 59.591 | 391 | 156 | 2 | 13 | 403 | 11 | 399 | 5.00e-169 | 480 |
| MS.gene67098.t1 | AT4G37050 | 60.804 | 398 | 148 | 2 | 14 | 404 | 28 | 424 | 3.08e-168 | 478 |
| MS.gene67098.t1 | AT4G37060 | 57.468 | 395 | 166 | 2 | 14 | 408 | 12 | 404 | 9.27e-165 | 469 |
| MS.gene67098.t1 | AT4G37070 | 59.200 | 375 | 151 | 2 | 13 | 387 | 11 | 383 | 1.52e-160 | 457 |
| MS.gene67098.t1 | AT4G37070 | 59.200 | 375 | 151 | 2 | 13 | 387 | 11 | 383 | 1.52e-160 | 457 |
| MS.gene67098.t1 | AT4G37060 | 53.286 | 426 | 166 | 3 | 14 | 408 | 12 | 435 | 3.58e-158 | 454 |
| MS.gene67098.t1 | AT4G37070 | 57.600 | 375 | 146 | 3 | 13 | 387 | 11 | 372 | 1.82e-152 | 436 |
| MS.gene67098.t1 | AT5G43590 | 53.077 | 390 | 172 | 4 | 13 | 399 | 6 | 387 | 7.65e-130 | 380 |
| MS.gene67098.t1 | AT5G43590 | 53.077 | 390 | 172 | 4 | 13 | 399 | 73 | 454 | 5.55e-129 | 380 |
| MS.gene67098.t1 | AT3G54950 | 27.569 | 399 | 258 | 11 | 21 | 414 | 98 | 470 | 1.40e-35 | 137 |
| MS.gene67098.t1 | AT4G29800 | 28.256 | 407 | 255 | 14 | 21 | 412 | 121 | 505 | 1.88e-35 | 137 |
| MS.gene67098.t1 | AT4G29800 | 28.186 | 408 | 255 | 14 | 21 | 412 | 121 | 506 | 2.74e-35 | 137 |
| MS.gene67098.t1 | AT2G39220 | 29.639 | 388 | 243 | 15 | 21 | 402 | 108 | 471 | 1.72e-34 | 134 |
| MS.gene67098.t1 | AT3G63200 | 28.707 | 317 | 192 | 10 | 23 | 333 | 32 | 320 | 1.10e-30 | 122 |
Find 83 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGGCAATGTTCAAGGTAAA+AGG | 0.209370 | 1.3:-3758243 | None:intergenic |
| TTAATAAATTCTCACCAATT+TGG | 0.220880 | 1.3:-3760339 | None:intergenic |
| TGATAATTACCTTCGAATTC+AGG | 0.242193 | 1.3:+3760101 | MS.gene67098:CDS |
| TCCAGAGTCAATTTAGAAAA+TGG | 0.281008 | 1.3:+3760373 | MS.gene67098:CDS |
| TTGAAGAAACTATGCCAAAT+TGG | 0.298509 | 1.3:+3760325 | MS.gene67098:CDS |
| GTAAAAGGGCTTGATATCTT+TGG | 0.318803 | 1.3:-3758228 | None:intergenic |
| GCTTCAGAGATCCCCTTGTT+TGG | 0.326246 | 1.3:+3758992 | MS.gene67098:intron |
| TACTCAATCAAGTGGTGATA+TGG | 0.328294 | 1.3:+3760035 | MS.gene67098:CDS |
| CCATATTCCAGAGGCTTGAT+TGG | 0.331569 | 1.3:-3759880 | None:intergenic |
| CCAATCAAGCCTCTGGAATA+TGG | 0.340675 | 1.3:+3759880 | MS.gene67098:CDS |
| GTAACCATTCTTAGTATTGA+TGG | 0.353477 | 1.3:+3757188 | MS.gene67098:CDS |
| ATTCCTTGAATCTCACCTTC+AGG | 0.368436 | 1.3:+3757250 | MS.gene67098:CDS |
| CCAAATGGGGATTATTAGAT+TGG | 0.382105 | 1.3:+3759974 | MS.gene67098:CDS |
| TGCACAAATGGCAGCCAAAT+GGG | 0.384292 | 1.3:+3759960 | MS.gene67098:CDS |
| TTGGTTTCTCCGGTTGTTAG+TGG | 0.394804 | 1.3:-3760406 | None:intergenic |
| TTTCTTTCCAATCAAGCCTC+TGG | 0.407655 | 1.3:+3759873 | MS.gene67098:CDS |
| CCAATCTAATAATCCCCATT+TGG | 0.412692 | 1.3:-3759974 | None:intergenic |
| TGAGAATTTATTAAAGAAAC+CGG | 0.414005 | 1.3:+3760348 | MS.gene67098:CDS |
| AGCATCTTCATTGGTTTCTC+CGG | 0.415887 | 1.3:-3760416 | None:intergenic |
| GGCTTGATTGGAAAGAAATC+AGG | 0.418966 | 1.3:-3759868 | None:intergenic |
| CTGATCATTTCAATAGGCAC+TGG | 0.431825 | 1.3:+3759910 | MS.gene67098:CDS |
| TCTTGCCTCTACTTGTGTGT+GGG | 0.432968 | 1.3:-3760612 | None:intergenic |
| CCTCTTGAGAGCATCTTCAT+TGG | 0.439200 | 1.3:-3760425 | None:intergenic |
| ATATTAATTACCTATGTTGT+GGG | 0.443069 | 1.3:-3758274 | None:intergenic |
| GCAAAGGTAATGAGATCTCT+TGG | 0.450334 | 1.3:+3758453 | MS.gene67098:CDS |
| CTGCACAAATGGCAGCCAAA+TGG | 0.451475 | 1.3:+3759959 | MS.gene67098:CDS |
| ACAAATAAAGATCAGGAAGC+TGG | 0.460216 | 1.3:+3759083 | MS.gene67098:CDS |
| AGGAATTCAATAATTGCAGC+AGG | 0.463149 | 1.3:-3757233 | None:intergenic |
| GGGCAATGTTCAAGGTAAAA+GGG | 0.470464 | 1.3:-3758242 | None:intergenic |
| TAACCATTCTTAGTATTGAT+GGG | 0.470961 | 1.3:+3757189 | MS.gene67098:CDS |
| GAGGAGTTCAATCTCATTGA+TGG | 0.474688 | 1.3:+3759113 | MS.gene67098:CDS |
| GATTACTTTGATGTGATCTC+AGG | 0.483035 | 1.3:+3758134 | MS.gene67098:CDS |
| CTTGGAGGACCCAAATATGA+TGG | 0.485178 | 1.3:+3758471 | MS.gene67098:CDS |
| TATATTAATTACCTATGTTG+TGG | 0.490009 | 1.3:-3758275 | None:intergenic |
| CAAGTTGTTAGAGAGAAACT+TGG | 0.490786 | 1.3:+3758507 | MS.gene67098:CDS |
| TTATTTGTGAAGTTGTGAGC+AGG | 0.494731 | 1.3:-3759068 | None:intergenic |
| TTGTGAGCAGGGAGATAAGT+AGG | 0.496729 | 1.3:-3759056 | None:intergenic |
| TGGTGTTTGCGCAAATAATC+CGG | 0.497493 | 1.3:+3759136 | MS.gene67098:CDS |
| CAAGTAGAGGCAAGAAAGCC+CGG | 0.498544 | 1.3:+3760620 | MS.gene67098:CDS |
| CAATAATTGCAGCAGGGATG+AGG | 0.499347 | 1.3:-3757226 | None:intergenic |
| GGAGAGGTTCACTGCACAAA+TGG | 0.505314 | 1.3:+3759948 | MS.gene67098:CDS |
| CAACTTCACAAATAAAGATC+AGG | 0.505940 | 1.3:+3759076 | MS.gene67098:CDS |
| TTCTTGCCTCTACTTGTGTG+TGG | 0.506302 | 1.3:-3760613 | None:intergenic |
| TCTCTCTAACAACTTGATGA+AGG | 0.508522 | 1.3:-3758500 | None:intergenic |
| TCTAAATTGACTCTGGAGAC+CGG | 0.508962 | 1.3:-3760367 | None:intergenic |
| TGATAAGATGAGAAAATGAT+TGG | 0.523309 | 1.3:-3758597 | None:intergenic |
| ATACCTGAAGGTGAGATTCA+AGG | 0.523660 | 1.3:-3757253 | None:intergenic |
| TTACCAAGTTCCCATAAGTA+GGG | 0.536098 | 1.3:-3757169 | None:intergenic |
| GTTACCAAGTTCCCATAAGT+AGG | 0.539081 | 1.3:-3757170 | None:intergenic |
| GTGATCTCAGGAACAAGTAC+AGG | 0.541512 | 1.3:+3758146 | MS.gene67098:CDS |
| ATGCAGGATGATACATTGAC+AGG | 0.541552 | 1.3:+3760265 | MS.gene67098:intron |
| TGAATCATGAAACTAGATGC+CGG | 0.546406 | 1.3:-3760639 | None:intergenic |
| TTACATAAAATTTCGATGGA+GGG | 0.558119 | 1.3:+3757113 | None:intergenic |
| GAATCATGAAACTAGATGCC+GGG | 0.560416 | 1.3:-3760638 | None:intergenic |
| TTAGATTGGCTAACACATAG+TGG | 0.560851 | 1.3:+3759988 | MS.gene67098:CDS |
| TGATCATTTCAATAGGCACT+GGG | 0.562419 | 1.3:+3759911 | MS.gene67098:CDS |
| TATTTGTGAAGTTGTGAGCA+GGG | 0.563364 | 1.3:-3759067 | None:intergenic |
| CTTGCCTCTACTTGTGTGTG+GGG | 0.564230 | 1.3:-3760611 | None:intergenic |
| AACCATTCTTAGTATTGATG+GGG | 0.567798 | 1.3:+3757190 | MS.gene67098:CDS |
| CAAAGTCTTGATGTCAAATG+TGG | 0.569923 | 1.3:-3758571 | None:intergenic |
| ATCTGTGTGCAGGAGTTGGA+TGG | 0.573566 | 1.3:+3758092 | MS.gene67098:intron |
| TTCTTCAGTAGACATTGCTA+CGG | 0.581643 | 1.3:+3760294 | MS.gene67098:CDS |
| TTTATCTGGAGCAGCTAACA+TGG | 0.585474 | 1.3:-3758183 | None:intergenic |
| GAAAGTTTAGCATCCAAACA+AGG | 0.590523 | 1.3:-3759005 | None:intergenic |
| TCAGGAAGCTGGAAAAGAAG+AGG | 0.603502 | 1.3:+3759094 | MS.gene67098:CDS |
| TTCAGTAGACATTGCTACGG+AGG | 0.603616 | 1.3:+3760297 | MS.gene67098:CDS |
| CCAATGAAGATGCTCTCAAG+AGG | 0.607291 | 1.3:+3760425 | MS.gene67098:CDS |
| AGTTGGATGGTGAAGATGCA+AGG | 0.613978 | 1.3:+3758105 | MS.gene67098:CDS |
| AAAGTTTAGCATCCAAACAA+GGG | 0.615469 | 1.3:-3759004 | None:intergenic |
| AGATCCCCACACACAAGTAG+AGG | 0.617675 | 1.3:+3760607 | MS.gene67098:CDS |
| GCACAAATGGCAGCCAAATG+GGG | 0.620024 | 1.3:+3759961 | MS.gene67098:CDS |
| AAGGTAATGAGATCTCTTGG+AGG | 0.632690 | 1.3:+3758456 | MS.gene67098:CDS |
| TACCAAGTTCCCATAAGTAG+GGG | 0.646419 | 1.3:-3757168 | None:intergenic |
| ATCTCAGGAACAAGTACAGG+AGG | 0.646501 | 1.3:+3758149 | MS.gene67098:CDS |
| ACCATTCTTAGTATTGATGG+GGG | 0.646720 | 1.3:+3757191 | MS.gene67098:CDS |
| TGGTGCGACACTATTAGCAA+AGG | 0.647189 | 1.3:+3758437 | MS.gene67098:CDS |
| GGAATTCAATAATTGCAGCA+GGG | 0.658810 | 1.3:-3757232 | None:intergenic |
| GAGTTCAATCTCATTGATGG+TGG | 0.662016 | 1.3:+3759116 | MS.gene67098:CDS |
| AAATGTGGGAACAACAATGT+TGG | 0.662239 | 1.3:-3758556 | None:intergenic |
| AAGTTTAGCATCCAAACAAG+GGG | 0.668793 | 1.3:-3759003 | None:intergenic |
| ACCAAGTTCCCATAAGTAGG+GGG | 0.679072 | 1.3:-3757167 | None:intergenic |
| AAAGTCTTGATGTCAAATGT+GGG | 0.692840 | 1.3:-3758570 | None:intergenic |
| AGAAAACGACCATATTCCAG+AGG | 0.710413 | 1.3:-3759889 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTTTATATATAA+TGG | + | chr1.3:3758649-3758668 | MS.gene67098:intron | 0.0% |
| !! | CCATAAAAAAAAAAAAAAAA+AGG | - | chr1.3:3760140-3760159 | None:intergenic | 10.0% |
| !! | GACAAAATATATAATTTATT+TGG | - | chr1.3:3758899-3758918 | None:intergenic | 10.0% |
| !! | TTCAAATAATAAAGTAATAT+TGG | - | chr1.3:3758051-3758070 | None:intergenic | 10.0% |
| !!! | CCTTTTTTTTTTTTTTTTTA+TGG | + | chr1.3:3760137-3760156 | MS.gene67098:intron | 10.0% |
| !!! | TCTAAAAAATAAGTTTTTAT+TGG | + | chr1.3:3758393-3758412 | MS.gene67098:intron | 10.0% |
| !! | GCACAATTATAATATAATTT+GGG | - | chr1.3:3760493-3760512 | None:intergenic | 15.0% |
| !! | TAAATTAATTAGTTGTTGAT+TGG | + | chr1.3:3759180-3759199 | MS.gene67098:intron | 15.0% |
| !! | TGCACAATTATAATATAATT+TGG | - | chr1.3:3760494-3760513 | None:intergenic | 15.0% |
| !! | TTGTTTATTTATATATTCGT+TGG | - | chr1.3:3759262-3759281 | None:intergenic | 15.0% |
| !!! | TAATTTATGTTTATTTTTCG+TGG | - | chr1.3:3757864-3757883 | None:intergenic | 15.0% |
| !!! | TCATTTTATCTATATGTTTT+AGG | - | chr1.3:3757770-3757789 | None:intergenic | 15.0% |
| !!! | TTATTTTCTTTTTGCATAAA+TGG | + | chr1.3:3757420-3757439 | MS.gene67098:intron | 15.0% |
| !!! | TTTTTTTTTTTTATGGTAGT+AGG | + | chr1.3:3760144-3760163 | MS.gene67098:intron | 15.0% |
| !! | AGATTTAACAGTTTATACAA+CGG | + | chr1.3:3757728-3757747 | MS.gene67098:intron | 20.0% |
| !! | ATATTAATTACCTATGTTGT+GGG | - | chr1.3:3758277-3758296 | None:intergenic | 20.0% |
| !! | ATTTATTATGCAAACTATCT+TGG | + | chr1.3:3757590-3757609 | MS.gene67098:intron | 20.0% |
| !! | CAATTATAATATAATTTGGG+TGG | - | chr1.3:3760490-3760509 | None:intergenic | 20.0% |
| !! | CATATATATAATATACCTGA+AGG | - | chr1.3:3757268-3757287 | None:intergenic | 20.0% |
| !! | CTTCTATTTGTAATTATTTG+AGG | + | chr1.3:3758330-3758349 | MS.gene67098:intron | 20.0% |
| !! | TAGCAAAAGAAATTTAAAGA+TGG | + | chr1.3:3757882-3757901 | MS.gene67098:intron | 20.0% |
| !! | TATATTAATTACCTATGTTG+TGG | - | chr1.3:3758278-3758297 | None:intergenic | 20.0% |
| !! | TATTCTATTCTAATACATTC+AGG | + | chr1.3:3760542-3760561 | MS.gene67098:intron | 20.0% |
| !! | TCAAAATTTGTATTATGCAA+TGG | + | chr1.3:3759326-3759345 | MS.gene67098:intron | 20.0% |
| !! | TGAGAATTTATTAAAGAAAC+CGG | + | chr1.3:3760348-3760367 | MS.gene67098:CDS | 20.0% |
| !! | TGAGTAAAAACATCAATTAA+GGG | - | chr1.3:3760021-3760040 | None:intergenic | 20.0% |
| !! | TGATGTACAAGATATATTAA+TGG | - | chr1.3:3760198-3760217 | None:intergenic | 20.0% |
| !! | TTAAGATTAATTAGTAGAGA+TGG | + | chr1.3:3760451-3760470 | MS.gene67098:intron | 20.0% |
| !! | TTAATAAATTCTCACCAATT+TGG | - | chr1.3:3760342-3760361 | None:intergenic | 20.0% |
| !! | TTCAAAAATAAAAGACAAAG+TGG | - | chr1.3:3759374-3759393 | None:intergenic | 20.0% |
| !! | TTGAGTAAAAACATCAATTA+AGG | - | chr1.3:3760022-3760041 | None:intergenic | 20.0% |
| !!! | AAAAAAAAGTGTCCTTTTTT+AGG | + | chr1.3:3757655-3757674 | MS.gene67098:intron | 20.0% |
| !!! | AAAAAAAGTGTCCTTTTTTA+GGG | + | chr1.3:3757656-3757675 | MS.gene67098:intron | 20.0% |
| !!! | ATGTATTTTAAATCCACAAT+TGG | - | chr1.3:3758682-3758701 | None:intergenic | 20.0% |
| !!! | ATTTCAAACAATTTTAGTCT+AGG | - | chr1.3:3758965-3758984 | None:intergenic | 20.0% |
| !!! | CTTTGAAATAAAACTATTGT+TGG | - | chr1.3:3758936-3758955 | None:intergenic | 20.0% |
| !!! | GAAAGTTTTTATATGTAAGT+TGG | + | chr1.3:3757530-3757549 | MS.gene67098:intron | 20.0% |
| !!! | GGTAAAACTTTTTACATTAA+CGG | + | chr1.3:3759612-3759631 | MS.gene67098:intron | 20.0% |
| !!! | TTTGTTATTTTTTATGATCC+AGG | + | chr1.3:3759798-3759817 | MS.gene67098:intron | 20.0% |
| ! | AATTGATTATTTGCACATAC+CGG | - | chr1.3:3759158-3759177 | None:intergenic | 25.0% |
| ! | ACAAAAAATTCCCCTAAAAA+AGG | - | chr1.3:3757670-3757689 | None:intergenic | 25.0% |
| ! | ACTAAATCCCAATTACATTA+TGG | + | chr1.3:3759414-3759433 | MS.gene67098:intron | 25.0% |
| ! | CATACATCCATAATGTAATT+GGG | - | chr1.3:3759424-3759443 | None:intergenic | 25.0% |
| ! | TAACAAATTCAACAAAATGC+AGG | + | chr1.3:3760249-3760268 | MS.gene67098:intron | 25.0% |
| ! | TGAAGAAAGAAACTCATATA+AGG | + | chr1.3:3759709-3759728 | MS.gene67098:intron | 25.0% |
| ! | TGATAAGATGAGAAAATGAT+TGG | - | chr1.3:3758600-3758619 | None:intergenic | 25.0% |
| ! | TTAAAATTCGAACTCTAAGT+AGG | - | chr1.3:3757322-3757341 | None:intergenic | 25.0% |
| !! | AATCATTTTCTCATCTTATC+AGG | + | chr1.3:3758599-3758618 | MS.gene67098:CDS | 25.0% |
| !! | AGGTATTTTCCATCATATTT+GGG | - | chr1.3:3758483-3758502 | None:intergenic | 25.0% |
| !! | TATGTTGTGGGAAAATTTTA+GGG | - | chr1.3:3758265-3758284 | None:intergenic | 25.0% |
| !!! | AAAAAAGTGTCCTTTTTTAG+GGG | + | chr1.3:3757657-3757676 | MS.gene67098:intron | 25.0% |
| !!! | AAGGTATTTTCCATCATATT+TGG | - | chr1.3:3758484-3758503 | None:intergenic | 25.0% |
| !!! | ATTGGTTCAATTTTTTGTAG+AGG | + | chr1.3:3758411-3758430 | MS.gene67098:intron | 25.0% |
| !!! | GATGTATGCACTTTTTATTT+TGG | + | chr1.3:3759436-3759455 | MS.gene67098:intron | 25.0% |
| !!! | TAACCATTCTTAGTATTGAT+GGG | + | chr1.3:3757189-3757208 | MS.gene67098:CDS | 25.0% |
| !!! | TGAAAGTACCTTGTATATAT+TGG | + | chr1.3:3757286-3757305 | MS.gene67098:intron | 25.0% |
| !!! | TGAGGAATTCAAGTTTTTTA+TGG | + | chr1.3:3758363-3758382 | MS.gene67098:intron | 25.0% |
| !!! | TTTATTTGGTCTTAAAACTG+TGG | - | chr1.3:3758885-3758904 | None:intergenic | 25.0% |
| AAAGTCTTGATGTCAAATGT+GGG | - | chr1.3:3758573-3758592 | None:intergenic | 30.0% | |
| AAAGTTTAGCATCCAAACAA+GGG | - | chr1.3:3759007-3759026 | None:intergenic | 30.0% | |
| AGCTGAAACAATTATTGATC+AGG | + | chr1.3:3758838-3758857 | MS.gene67098:intron | 30.0% | |
| AGTTTAGTTAAGAATCGCTT+GGG | + | chr1.3:3758795-3758814 | MS.gene67098:intron | 30.0% | |
| CAAAAATACTTTCACAAGAG+AGG | + | chr1.3:3760569-3760588 | MS.gene67098:CDS | 30.0% | |
| CAACTTCACAAATAAAGATC+AGG | + | chr1.3:3759076-3759095 | MS.gene67098:CDS | 30.0% | |
| GCATACATCCATAATGTAAT+TGG | - | chr1.3:3759425-3759444 | None:intergenic | 30.0% | |
| GTATTATGCAATGGCATATA+TGG | + | chr1.3:3759335-3759354 | MS.gene67098:intron | 30.0% | |
| TAGTTTAGTTAAGAATCGCT+TGG | + | chr1.3:3758794-3758813 | MS.gene67098:intron | 30.0% | |
| TCAGACACTAACACTTAATA+GGG | + | chr1.3:3757816-3757835 | MS.gene67098:intron | 30.0% | |
| TCCAGAGTCAATTTAGAAAA+TGG | + | chr1.3:3760373-3760392 | MS.gene67098:CDS | 30.0% | |
| TGATAATTACCTTCGAATTC+AGG | + | chr1.3:3760101-3760120 | MS.gene67098:CDS | 30.0% | |
| TTCAGACACTAACACTTAAT+AGG | + | chr1.3:3757815-3757834 | MS.gene67098:intron | 30.0% | |
| TTGAAGAAACTATGCCAAAT+TGG | + | chr1.3:3760325-3760344 | MS.gene67098:CDS | 30.0% | |
| ! | AATTCAGTCACAGAATTTTG+CGG | + | chr1.3:3757925-3757944 | MS.gene67098:intron | 30.0% |
| ! | AGACAAAGTGGATTTAATCA+TGG | - | chr1.3:3759362-3759381 | None:intergenic | 30.0% |
| ! | ATTTGAGGTGTATATACTTG+AGG | + | chr1.3:3758345-3758364 | MS.gene67098:intron | 30.0% |
| ! | CGTTTTCTGATCATTTCAAT+AGG | + | chr1.3:3759904-3759923 | MS.gene67098:CDS | 30.0% |
| ! | CTAAAATTTTCCCACAACAT+AGG | + | chr1.3:3758264-3758283 | MS.gene67098:CDS | 30.0% |
| ! | CTATGTTGTGGGAAAATTTT+AGG | - | chr1.3:3758266-3758285 | None:intergenic | 30.0% |
| ! | GAAATTTTACCTGAATTCGA+AGG | - | chr1.3:3760113-3760132 | None:intergenic | 30.0% |
| ! | GTAACCATTCTTAGTATTGA+TGG | + | chr1.3:3757188-3757207 | MS.gene67098:CDS | 30.0% |
| ! | TACCTTGTATATATTGGCTA+TGG | + | chr1.3:3757292-3757311 | MS.gene67098:intron | 30.0% |
| !! | AACCATTCTTAGTATTGATG+GGG | + | chr1.3:3757190-3757209 | MS.gene67098:CDS | 30.0% |
| !! | ACCATTTTCTAAATTGACTC+TGG | - | chr1.3:3760377-3760396 | None:intergenic | 30.0% |
| !! | ACTGTGGTTTTTCTAAAGAT+AGG | - | chr1.3:3758869-3758888 | None:intergenic | 30.0% |
| !! | GATGTTTTTACTCAATCAAG+TGG | + | chr1.3:3760027-3760046 | MS.gene67098:CDS | 30.0% |
| !! | GTAAGTTGGTTCCATAATAA+TGG | + | chr1.3:3757544-3757563 | MS.gene67098:intron | 30.0% |
| !! | TATGTTTATTTTTCGTGGCT+AGG | - | chr1.3:3757859-3757878 | None:intergenic | 30.0% |
| !!! | AAATTTTAGGGCAATGTTCA+AGG | - | chr1.3:3758253-3758272 | None:intergenic | 30.0% |
| !!! | AGTGGACGATTATTTTTATC+TGG | - | chr1.3:3758200-3758219 | None:intergenic | 30.0% |
| !!! | TCAATTTTTTGTAGAGGACT+TGG | + | chr1.3:3758417-3758436 | MS.gene67098:intron | 30.0% |
| AAATGTGGGAACAACAATGT+TGG | - | chr1.3:3758559-3758578 | None:intergenic | 35.0% | |
| AAGTTTAGCATCCAAACAAG+GGG | - | chr1.3:3759006-3759025 | None:intergenic | 35.0% | |
| ACAAATAAAGATCAGGAAGC+TGG | + | chr1.3:3759083-3759102 | MS.gene67098:CDS | 35.0% | |
| AGCCATAGCCAATATATACA+AGG | - | chr1.3:3757297-3757316 | None:intergenic | 35.0% | |
| AGGAATTCAATAATTGCAGC+AGG | - | chr1.3:3757236-3757255 | None:intergenic | 35.0% | |
| ATATCTTTGGCAGCAAAAAG+TGG | - | chr1.3:3758218-3758237 | None:intergenic | 35.0% | |
| CAAAGTCTTGATGTCAAATG+TGG | - | chr1.3:3758574-3758593 | None:intergenic | 35.0% | |
| CAAGTTGTTAGAGAGAAACT+TGG | + | chr1.3:3758507-3758526 | MS.gene67098:CDS | 35.0% | |
| CCAAATGGGGATTATTAGAT+TGG | + | chr1.3:3759974-3759993 | MS.gene67098:CDS | 35.0% | |
| CCAATCTAATAATCCCCATT+TGG | - | chr1.3:3759977-3759996 | None:intergenic | 35.0% | |
| GAAAGTTTAGCATCCAAACA+AGG | - | chr1.3:3759008-3759027 | None:intergenic | 35.0% | |
| GATTACTTTGATGTGATCTC+AGG | + | chr1.3:3758134-3758153 | MS.gene67098:CDS | 35.0% | |
| GGAATTCAATAATTGCAGCA+GGG | - | chr1.3:3757235-3757254 | None:intergenic | 35.0% | |
| GTAAAAGGGCTTGATATCTT+TGG | - | chr1.3:3758231-3758250 | None:intergenic | 35.0% | |
| GTCAAGTTATTGAACTCAAG+TGG | + | chr1.3:3758764-3758783 | MS.gene67098:intron | 35.0% | |
| GTTCCATAATAATGGCAGTA+GGG | + | chr1.3:3757552-3757571 | MS.gene67098:intron | 35.0% | |
| TAATGGAATGTTGCCAATTG+TGG | + | chr1.3:3758666-3758685 | MS.gene67098:intron | 35.0% | |
| TACTCAATCAAGTGGTGATA+TGG | + | chr1.3:3760035-3760054 | MS.gene67098:CDS | 35.0% | |
| TATTAATGGCATAACCTCTG+AGG | - | chr1.3:3760184-3760203 | None:intergenic | 35.0% | |
| TATTTGTGAAGTTGTGAGCA+GGG | - | chr1.3:3759070-3759089 | None:intergenic | 35.0% | |
| TCTCTCTAACAACTTGATGA+AGG | - | chr1.3:3758503-3758522 | None:intergenic | 35.0% | |
| TGATCATTTCAATAGGCACT+GGG | + | chr1.3:3759911-3759930 | MS.gene67098:CDS | 35.0% | |
| TGGCTAGGTTTATTAGTAGT+TGG | - | chr1.3:3757844-3757863 | None:intergenic | 35.0% | |
| TTACCAAGTTCCCATAAGTA+GGG | - | chr1.3:3757172-3757191 | None:intergenic | 35.0% | |
| TTATGCAAACTATCTTGGTG+AGG | + | chr1.3:3757595-3757614 | MS.gene67098:intron | 35.0% | |
| TTATTTGTGAAGTTGTGAGC+AGG | - | chr1.3:3759071-3759090 | None:intergenic | 35.0% | |
| TTCTTCAGTAGACATTGCTA+CGG | + | chr1.3:3760294-3760313 | MS.gene67098:CDS | 35.0% | |
| ! | AAGATTGTTGTGTGCTGATA+TGG | + | chr1.3:3759591-3759610 | MS.gene67098:intron | 35.0% |
| ! | TAGTGCAGCTACTTTATGAA+AGG | + | chr1.3:3757619-3757638 | MS.gene67098:intron | 35.0% |
| ! | TTAGATTGGCTAACACATAG+TGG | + | chr1.3:3759988-3760007 | MS.gene67098:CDS | 35.0% |
| !! | AATTAAGTTGATCTGTGTGC+AGG | + | chr1.3:3758082-3758101 | MS.gene67098:intron | 35.0% |
| !! | ACCATTCTTAGTATTGATGG+GGG | + | chr1.3:3757191-3757210 | MS.gene67098:CDS | 35.0% |
| AAATTCAGCCCCCTACTTAT+GGG | + | chr1.3:3757159-3757178 | MS.gene67098:CDS | 40.0% | |
| AAGGTAATGAGATCTCTTGG+AGG | + | chr1.3:3758456-3758475 | MS.gene67098:CDS | 40.0% | |
| AGAAAACGACCATATTCCAG+AGG | - | chr1.3:3759892-3759911 | None:intergenic | 40.0% | |
| AGGGCAATGTTCAAGGTAAA+AGG | - | chr1.3:3758246-3758265 | None:intergenic | 40.0% | |
| ATACCTGAAGGTGAGATTCA+AGG | - | chr1.3:3757256-3757275 | None:intergenic | 40.0% | |
| ATGCAGGATGATACATTGAC+AGG | + | chr1.3:3760265-3760284 | MS.gene67098:intron | 40.0% | |
| ATGGTAGTAGGAGTCGAATT+CGG | + | chr1.3:3760156-3760175 | MS.gene67098:intron | 40.0% | |
| ATTCCTTGAATCTCACCTTC+AGG | + | chr1.3:3757250-3757269 | MS.gene67098:CDS | 40.0% | |
| CATCCCTACTGCCATTATTA+TGG | - | chr1.3:3757558-3757577 | None:intergenic | 40.0% | |
| CATTCATTGCAACTAAAGCC+TGG | - | chr1.3:3759819-3759838 | None:intergenic | 40.0% | |
| CTGATCATTTCAATAGGCAC+TGG | + | chr1.3:3759910-3759929 | MS.gene67098:CDS | 40.0% | |
| GAGGAGTTCAATCTCATTGA+TGG | + | chr1.3:3759113-3759132 | MS.gene67098:CDS | 40.0% | |
| GAGTTCAATCTCATTGATGG+TGG | + | chr1.3:3759116-3759135 | MS.gene67098:CDS | 40.0% | |
| GCAAAGGTAATGAGATCTCT+TGG | + | chr1.3:3758453-3758472 | MS.gene67098:CDS | 40.0% | |
| GGCTTGATTGGAAAGAAATC+AGG | - | chr1.3:3759871-3759890 | None:intergenic | 40.0% | |
| GGGCAATGTTCAAGGTAAAA+GGG | - | chr1.3:3758245-3758264 | None:intergenic | 40.0% | |
| GGTTCCATAATAATGGCAGT+AGG | + | chr1.3:3757551-3757570 | MS.gene67098:intron | 40.0% | |
| GTTACCAAGTTCCCATAAGT+AGG | - | chr1.3:3757173-3757192 | None:intergenic | 40.0% | |
| TACCAAGTTCCCATAAGTAG+GGG | - | chr1.3:3757171-3757190 | None:intergenic | 40.0% | |
| TAGATATAGCGCAAGCTAAG+TGG | - | chr1.3:3760222-3760241 | None:intergenic | 40.0% | |
| TCCCCCATCAATACTAAGAA+TGG | - | chr1.3:3757195-3757214 | None:intergenic | 40.0% | |
| TGGTGTTTGCGCAAATAATC+CGG | + | chr1.3:3759136-3759155 | MS.gene67098:CDS | 40.0% | |
| TTTCTTTCCAATCAAGCCTC+TGG | + | chr1.3:3759873-3759892 | MS.gene67098:CDS | 40.0% | |
| ! | CATTTTGAGCCACTAACAAC+CGG | + | chr1.3:3760397-3760416 | MS.gene67098:CDS | 40.0% |
| ! | TCTAAATTGACTCTGGAGAC+CGG | - | chr1.3:3760370-3760389 | None:intergenic | 40.0% |
| ! | TTTATCTGGAGCAGCTAACA+TGG | - | chr1.3:3758186-3758205 | None:intergenic | 40.0% |
| !! | AGCATCTTCATTGGTTTCTC+CGG | - | chr1.3:3760419-3760438 | None:intergenic | 40.0% |
| !! | ATTCTTAGTATTGATGGGGG+AGG | + | chr1.3:3757194-3757213 | MS.gene67098:CDS | 40.0% |
| !! | TATTGATGGGGGAGGTATTA+GGG | + | chr1.3:3757202-3757221 | MS.gene67098:CDS | 40.0% |
| ACCAAGTTCCCATAAGTAGG+GGG | - | chr1.3:3757170-3757189 | None:intergenic | 45.0% | |
| AGTTGGATGGTGAAGATGCA+AGG | + | chr1.3:3758105-3758124 | MS.gene67098:CDS | 45.0% | |
| ATCTCAGGAACAAGTACAGG+AGG | + | chr1.3:3758149-3758168 | MS.gene67098:CDS | 45.0% | |
| CAAATTCAGCCCCCTACTTA+TGG | + | chr1.3:3757158-3757177 | MS.gene67098:CDS | 45.0% | |
| CAATAATTGCAGCAGGGATG+AGG | - | chr1.3:3757229-3757248 | None:intergenic | 45.0% | |
| CACTGGGACTGCAAAAAATG+AGG | + | chr1.3:3759927-3759946 | MS.gene67098:CDS | 45.0% | |
| CCAATGAAGATGCTCTCAAG+AGG | + | chr1.3:3760425-3760444 | MS.gene67098:CDS | 45.0% | |
| CCATATTCCAGAGGCTTGAT+TGG | - | chr1.3:3759883-3759902 | None:intergenic | 45.0% | |
| CTTGGAGGACCCAAATATGA+TGG | + | chr1.3:3758471-3758490 | MS.gene67098:CDS | 45.0% | |
| GGACTGCAAAAAATGAGGAG+AGG | + | chr1.3:3759932-3759951 | MS.gene67098:CDS | 45.0% | |
| GTGATCTCAGGAACAAGTAC+AGG | + | chr1.3:3758146-3758165 | MS.gene67098:CDS | 45.0% | |
| TCAGGAAGCTGGAAAAGAAG+AGG | + | chr1.3:3759094-3759113 | MS.gene67098:CDS | 45.0% | |
| TCTTGCCTCTACTTGTGTGT+GGG | - | chr1.3:3760615-3760634 | None:intergenic | 45.0% | |
| TGCACAAATGGCAGCCAAAT+GGG | + | chr1.3:3759960-3759979 | MS.gene67098:CDS | 45.0% | |
| TGGTGCGACACTATTAGCAA+AGG | + | chr1.3:3758437-3758456 | MS.gene67098:CDS | 45.0% | |
| TTCAGTAGACATTGCTACGG+AGG | + | chr1.3:3760297-3760316 | MS.gene67098:CDS | 45.0% | |
| TTCTTGCCTCTACTTGTGTG+TGG | - | chr1.3:3760616-3760635 | None:intergenic | 45.0% | |
| TTGGTTTCTCCGGTTGTTAG+TGG | - | chr1.3:3760409-3760428 | None:intergenic | 45.0% | |
| TTGTGAGCAGGGAGATAAGT+AGG | - | chr1.3:3759059-3759078 | None:intergenic | 45.0% | |
| !! | ATTGATGGGGGAGGTATTAG+GGG | + | chr1.3:3757203-3757222 | MS.gene67098:CDS | 45.0% |
| !! | CCAATCAAGCCTCTGGAATA+TGG | + | chr1.3:3759880-3759899 | MS.gene67098:CDS | 45.0% |
| !! | CCTCTTGAGAGCATCTTCAT+TGG | - | chr1.3:3760428-3760447 | None:intergenic | 45.0% |
| !! | GTATTGATGGGGGAGGTATT+AGG | + | chr1.3:3757201-3757220 | MS.gene67098:CDS | 45.0% |
| !! | ATTATTTAATTAATAATTGA+AGG | + | chr1.3:3759766-3759785 | MS.gene67098:intron | 5.0% |
| AGATCCCCACACACAAGTAG+AGG | + | chr1.3:3760607-3760626 | MS.gene67098:CDS | 50.0% | |
| AGTCGAATTCGGTACCTCAG+AGG | + | chr1.3:3760167-3760186 | MS.gene67098:intron | 50.0% | |
| ATCTGTGTGCAGGAGTTGGA+TGG | + | chr1.3:3758092-3758111 | MS.gene67098:intron | 50.0% | |
| CAAGTAGAGGCAAGAAAGCC+CGG | + | chr1.3:3760620-3760639 | MS.gene67098:CDS | 50.0% | |
| CTGCACAAATGGCAGCCAAA+TGG | + | chr1.3:3759959-3759978 | MS.gene67098:CDS | 50.0% | |
| CTTGCCTCTACTTGTGTGTG+GGG | - | chr1.3:3760614-3760633 | None:intergenic | 50.0% | |
| GCACAAATGGCAGCCAAATG+GGG | + | chr1.3:3759961-3759980 | MS.gene67098:CDS | 50.0% | |
| GCTTCAGAGATCCCCTTGTT+TGG | + | chr1.3:3758992-3759011 | MS.gene67098:intron | 50.0% | |
| GGAGAGGTTCACTGCACAAA+TGG | + | chr1.3:3759948-3759967 | MS.gene67098:CDS | 50.0% | |
| GTTGATCTGTGTGCAGGAGT+TGG | + | chr1.3:3758088-3758107 | MS.gene67098:intron | 50.0% | |
| GCCCCCTACTTATGGGAACT+TGG | + | chr1.3:3757166-3757185 | MS.gene67098:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 3757128 | 3760657 | 3757128 | ID=MS.gene67098 |
| chr1.3 | mRNA | 3757128 | 3760657 | 3757128 | ID=MS.gene67098.t1;Parent=MS.gene67098 |
| chr1.3 | exon | 3757128 | 3757271 | 3757128 | ID=MS.gene67098.t1.exon1;Parent=MS.gene67098.t1 |
| chr1.3 | CDS | 3757128 | 3757271 | 3757128 | ID=cds.MS.gene67098.t1;Parent=MS.gene67098.t1 |
| chr1.3 | exon | 3758104 | 3758285 | 3758104 | ID=MS.gene67098.t1.exon2;Parent=MS.gene67098.t1 |
| chr1.3 | CDS | 3758104 | 3758285 | 3758104 | ID=cds.MS.gene67098.t1;Parent=MS.gene67098.t1 |
| chr1.3 | exon | 3758431 | 3758620 | 3758431 | ID=MS.gene67098.t1.exon3;Parent=MS.gene67098.t1 |
| chr1.3 | CDS | 3758431 | 3758620 | 3758431 | ID=cds.MS.gene67098.t1;Parent=MS.gene67098.t1 |
| chr1.3 | exon | 3758993 | 3759157 | 3758993 | ID=MS.gene67098.t1.exon4;Parent=MS.gene67098.t1 |
| chr1.3 | CDS | 3758993 | 3759157 | 3758993 | ID=cds.MS.gene67098.t1;Parent=MS.gene67098.t1 |
| chr1.3 | exon | 3759820 | 3760122 | 3759820 | ID=MS.gene67098.t1.exon5;Parent=MS.gene67098.t1 |
| chr1.3 | CDS | 3759820 | 3760122 | 3759820 | ID=cds.MS.gene67098.t1;Parent=MS.gene67098.t1 |
| chr1.3 | exon | 3760271 | 3760446 | 3760271 | ID=MS.gene67098.t1.exon6;Parent=MS.gene67098.t1 |
| chr1.3 | CDS | 3760271 | 3760446 | 3760271 | ID=cds.MS.gene67098.t1;Parent=MS.gene67098.t1 |
| chr1.3 | exon | 3760564 | 3760657 | 3760564 | ID=MS.gene67098.t1.exon7;Parent=MS.gene67098.t1 |
| chr1.3 | CDS | 3760564 | 3760657 | 3760564 | ID=cds.MS.gene67098.t1;Parent=MS.gene67098.t1 |
| Gene Sequence |
| Protein sequence |
