Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67595.t1 | XP_003607217.2 | 90 | 948 | 92 | 1 | 1 | 945 | 40 | 987 | 0.00E+00 | 1706 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67595.t1 | P36428 | 72.5 | 947 | 255 | 3 | 4 | 945 | 55 | 1001 | 0.0e+00 | 1406.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67595.t1 | G7JNH3 | 90.0 | 948 | 92 | 1 | 1 | 945 | 1 | 948 | 0.0e+00 | 1706.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049666 | MS.gene67595 | 0.802145 | 6.45E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene67595 | 0.824386 | 8.30E-54 | -1.69E-46 |
| MS.gene050561 | MS.gene67595 | 0.818364 | 2.04E-52 | -1.69E-46 |
| MS.gene050562 | MS.gene67595 | 0.812583 | 3.94E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene67595 | 0.807211 | 5.65E-50 | -1.69E-46 |
| MS.gene052239 | MS.gene67595 | -0.804545 | 2.05E-49 | -1.69E-46 |
| MS.gene053195 | MS.gene67595 | 0.805037 | 1.62E-49 | -1.69E-46 |
| MS.gene055694 | MS.gene67595 | 0.818026 | 2.43E-52 | -1.69E-46 |
| MS.gene057598 | MS.gene67595 | 0.804532 | 2.06E-49 | -1.69E-46 |
| MS.gene058294 | MS.gene67595 | 0.808306 | 3.30E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene67595 | 0.800743 | 1.25E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene67595 | MS.gene68723 | PPI |
| MS.gene063074 | MS.gene67595 | PPI |
| MS.gene68122 | MS.gene67595 | PPI |
| MS.gene67595 | MS.gene014188 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67595.t1 | MTR_4g074640 | 89.979 | 948 | 92 | 1 | 1 | 945 | 1 | 948 | 0.0 | 1739 |
| MS.gene67595.t1 | MTR_4g074670 | 82.713 | 457 | 79 | 0 | 5 | 461 | 8 | 464 | 0.0 | 824 |
| MS.gene67595.t1 | MTR_4g074670 | 75.393 | 191 | 47 | 0 | 757 | 947 | 445 | 635 | 5.10e-71 | 248 |
| MS.gene67595.t1 | MTR_4g074670 | 80.142 | 282 | 56 | 0 | 180 | 461 | 1 | 282 | 1.72e-162 | 484 |
| MS.gene67595.t1 | MTR_4g074670 | 81.609 | 174 | 32 | 0 | 774 | 947 | 280 | 453 | 5.13e-73 | 248 |
| MS.gene67595.t1 | MTR_3g118360 | 34.182 | 825 | 451 | 21 | 13 | 804 | 86 | 851 | 1.62e-126 | 404 |
| MS.gene67595.t1 | MTR_3g118360 | 34.182 | 825 | 451 | 21 | 13 | 804 | 86 | 851 | 2.41e-126 | 404 |
| MS.gene67595.t1 | MTR_3g118360 | 34.182 | 825 | 451 | 21 | 13 | 804 | 86 | 851 | 1.78e-125 | 404 |
| MS.gene67595.t1 | MTR_3g118360 | 31.699 | 612 | 346 | 15 | 222 | 802 | 1 | 571 | 1.21e-65 | 234 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67595.t1 | AT1G50200 | 72.545 | 947 | 255 | 3 | 4 | 945 | 55 | 1001 | 0.0 | 1401 |
| MS.gene67595.t1 | AT1G50200 | 71.937 | 955 | 255 | 4 | 4 | 945 | 55 | 1009 | 0.0 | 1394 |
| MS.gene67595.t1 | AT5G22800 | 35.152 | 825 | 444 | 22 | 13 | 804 | 83 | 849 | 2.91e-133 | 425 |
| MS.gene67595.t1 | AT5G22800 | 35.152 | 825 | 444 | 22 | 13 | 804 | 108 | 874 | 4.82e-133 | 425 |
Find 217 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCATAATGTTCAAGTTTA+TGG | 0.095893 | 5.2:+14436191 | MS.gene67595:CDS |
| AACATTTATGCTACTTATTT+TGG | 0.136454 | 5.2:+14430540 | MS.gene67595:CDS |
| GAAGAACAATAGATCCTTTC+TGG | 0.201321 | 5.2:-14436625 | None:intergenic |
| CACCAGCTCGAATGCACTTC+TGG | 0.208889 | 5.2:-14430258 | None:intergenic |
| ACTGGTGCTCGGCCATATTC+TGG | 0.216626 | 5.2:+14432552 | MS.gene67595:CDS |
| AAGGGTCTGCGGACTGTTTC+TGG | 0.234343 | 5.2:+14436867 | MS.gene67595:CDS |
| TCTTTGGTCAGGAAAATTTC+TGG | 0.242948 | 5.2:+14430779 | MS.gene67595:intron |
| ATGGAACCTTGTCTTTATTC+AGG | 0.262339 | 5.2:+14430915 | MS.gene67595:CDS |
| GTTTCAAATTTGCTTGGTTC+AGG | 0.270432 | 5.2:+14434717 | MS.gene67595:CDS |
| GACAGCTGTGGAACATGTTC+AGG | 0.291996 | 5.2:+14433699 | MS.gene67595:CDS |
| TGCTCTTGATGCAATTAAAA+TGG | 0.295903 | 5.2:+14437263 | MS.gene67595:CDS |
| TAACCGAGATGCCGCGTCTT+TGG | 0.300564 | 5.2:+14430861 | MS.gene67595:CDS |
| ATCAAGAACTGCTCAAAATA+AGG | 0.306307 | 5.2:+14434496 | MS.gene67595:CDS |
| CCAGTGTCAACGTGCTTTGC+AGG | 0.310029 | 5.2:-14431123 | None:intergenic |
| GAAAGGAGATAAAGGTAAAT+TGG | 0.318522 | 5.2:+14439652 | MS.gene67595:CDS |
| AATTGACTCAATTCTTCTTA+AGG | 0.321886 | 5.2:-14436772 | None:intergenic |
| ATGTATGGTTAGCGGCTATA+AGG | 0.328806 | 5.2:-14436461 | None:intergenic |
| CCTGGACGTGTTCTTCCCTT+TGG | 0.334344 | 5.2:+14430630 | MS.gene67595:CDS |
| TGGTGATGTTGGTGTAATTC+TGG | 0.341373 | 5.2:+14435469 | MS.gene67595:CDS |
| TGAGCAAATTAATGCTGAAT+TGG | 0.344749 | 5.2:+14436800 | MS.gene67595:CDS |
| TCAGGAAAATTTCTGGGAAA+TGG | 0.345759 | 5.2:+14430786 | MS.gene67595:intron |
| GGTCCGACTTTCCCAGAATA+TGG | 0.356983 | 5.2:-14432564 | None:intergenic |
| CTGTCATTTGCCATTGCTGA+TGG | 0.364745 | 5.2:+14432645 | MS.gene67595:CDS |
| CTCTTCGAAGAACTTCAAAA+AGG | 0.370514 | 5.2:-14429153 | None:intergenic |
| TTTGAATTGTGGGATACATA+TGG | 0.375692 | 5.2:+14434286 | MS.gene67595:CDS |
| GGCCAAGATGGCCCTACTTC+AGG | 0.378146 | 5.2:+14439012 | MS.gene67595:CDS |
| AGTAGATGAAGCGGCTAAGC+TGG | 0.382670 | 5.2:+14437305 | MS.gene67595:CDS |
| TCGTGCTTCACATTGGTAAT+GGG | 0.382910 | 5.2:+14436219 | MS.gene67595:CDS |
| ATGTTGGGCAGCTGGTCTTT+TGG | 0.385798 | 5.2:+14430340 | MS.gene67595:CDS |
| AGTTTGCCCAATCTAGTGTT+AGG | 0.386296 | 5.2:-14430217 | None:intergenic |
| ATGTCTCTGGACTCGTAGTC+AGG | 0.387872 | 5.2:-14430588 | None:intergenic |
| AGCAGAATAGCATCGAAAAT+AGG | 0.394070 | 5.2:-14431216 | None:intergenic |
| CTTTGGTCAGGAAAATTTCT+GGG | 0.395767 | 5.2:+14430780 | MS.gene67595:intron |
| GAGTGGCTGAGTAATGCTTT+GGG | 0.399075 | 5.2:+14439683 | MS.gene67595:CDS |
| ACTCCATCTGCATTGAGATA+TGG | 0.403780 | 5.2:+14430896 | MS.gene67595:CDS |
| ATAGGTAGCGTTTGAATTGT+GGG | 0.406155 | 5.2:+14434276 | MS.gene67595:intron |
| TTCTCATGTTGATGTTGGCC+TGG | 0.406787 | 5.2:+14439293 | MS.gene67595:CDS |
| TGTTGATCCTAACACTAGAT+TGG | 0.408359 | 5.2:+14430210 | MS.gene67595:CDS |
| AATGTAGGTTTATCCTGATC+CGG | 0.410601 | 5.2:+14436964 | MS.gene67595:intron |
| CAAGAGGAGGAGGAAAGTTT+CGG | 0.410641 | 5.2:+14433531 | MS.gene67595:CDS |
| TTCGTGCTTCACATTGGTAA+TGG | 0.413069 | 5.2:+14436218 | MS.gene67595:CDS |
| GCATCAACAAGTCGATTTCT+CGG | 0.413075 | 5.2:-14440398 | None:intergenic |
| CTTAAGGAATCAGCATCAAC+AGG | 0.414659 | 5.2:-14436756 | None:intergenic |
| AGAGTGGCTGAGTAATGCTT+TGG | 0.418202 | 5.2:+14439682 | MS.gene67595:CDS |
| AACAGCAGCAAGAGCACATT+AGG | 0.421486 | 5.2:+14433499 | MS.gene67595:CDS |
| CTATGCTGAGCAAGGTGGTC+AGG | 0.422720 | 5.2:+14435505 | MS.gene67595:CDS |
| AAGTGTTGTGGCAAATGTGC+TGG | 0.430083 | 5.2:+14433455 | MS.gene67595:CDS |
| AACAAGGTTGTAGTTTGTGC+TGG | 0.431318 | 5.2:+14439620 | MS.gene67595:CDS |
| TCCACCTCCGGCGTCATGTC+AGG | 0.434003 | 5.2:+14429092 | None:intergenic |
| ATTTCAGCTTTCTTAGCAGC+AGG | 0.441476 | 5.2:-14438986 | None:intergenic |
| TACCTGAAGTAGGGCCATCT+TGG | 0.443045 | 5.2:-14439014 | None:intergenic |
| TTGAATTGTGGGATACATAT+GGG | 0.443063 | 5.2:+14434287 | MS.gene67595:CDS |
| TGTATGGTTAGCGGCTATAA+GGG | 0.450030 | 5.2:-14436460 | None:intergenic |
| ACCCTTGATACGCATGGCTT+CGG | 0.450138 | 5.2:-14436850 | None:intergenic |
| TATAGGTAGCGTTTGAATTG+TGG | 0.450971 | 5.2:+14434275 | MS.gene67595:intron |
| GCGTTAGCAAAGAGGAGAGT+AGG | 0.452058 | 5.2:-14429224 | None:intergenic |
| ATAAAATTGACATGGCATAC+AGG | 0.452723 | 5.2:+14432598 | MS.gene67595:CDS |
| TTAAACAAGAAGCCATTAGC+TGG | 0.452886 | 5.2:+14430371 | MS.gene67595:CDS |
| TTTCGGCAGAACCTTAGTTA+AGG | 0.454210 | 5.2:+14433548 | MS.gene67595:CDS |
| TGCCGAAGCCATGCGTATCA+AGG | 0.455197 | 5.2:+14436848 | MS.gene67595:CDS |
| ACCAGCTCGAATGCACTTCT+GGG | 0.457402 | 5.2:-14430257 | None:intergenic |
| AAGTTCCCATGCCCAGCTAA+TGG | 0.458940 | 5.2:-14430383 | None:intergenic |
| CAGGAAAATTTCTGGGAAAT+GGG | 0.459057 | 5.2:+14430787 | MS.gene67595:intron |
| GTGTCGGAGAAAGGAGATAA+AGG | 0.459986 | 5.2:+14439644 | MS.gene67595:CDS |
| AAACTTTAACCATATGTCTC+TGG | 0.460356 | 5.2:-14430601 | None:intergenic |
| TGTAAGGATTACAGCTGAAA+AGG | 0.463474 | 5.2:+14439233 | MS.gene67595:CDS |
| CTGGTGCTCGGCCATATTCT+GGG | 0.468254 | 5.2:+14432553 | MS.gene67595:CDS |
| GTTGATCCTAACACTAGATT+GGG | 0.468358 | 5.2:+14430211 | MS.gene67595:CDS |
| TGCATTTCTCATGTTGATGT+TGG | 0.470612 | 5.2:+14439288 | MS.gene67595:CDS |
| AAAACAAATGCAAAGCTGTA+AGG | 0.471642 | 5.2:+14439217 | MS.gene67595:CDS |
| ATGATAGTTTCAAATTTGCT+TGG | 0.474087 | 5.2:+14434711 | MS.gene67595:CDS |
| GTAACACATTTACAGGCAAC+TGG | 0.475309 | 5.2:+14432534 | MS.gene67595:intron |
| GGGAGATGTGGTAAAGGAAA+AGG | 0.476017 | 5.2:+14439716 | MS.gene67595:CDS |
| GACACAACTCTAGCCGGATC+AGG | 0.476857 | 5.2:-14436977 | None:intergenic |
| GGAAAAGGAGGTCTTGTAAC+GGG | 0.477542 | 5.2:+14439731 | MS.gene67595:CDS |
| GTAACATGTGTGTGCATGTA+TGG | 0.480970 | 5.2:-14436476 | None:intergenic |
| GTCAACGTGCTTTGCAGGCA+GGG | 0.481293 | 5.2:-14431118 | None:intergenic |
| GGGTTGTTGCGGATCACATC+AGG | 0.482984 | 5.2:+14432619 | MS.gene67595:CDS |
| TTTCAAATTTGCTTGGTTCA+GGG | 0.485471 | 5.2:+14434718 | MS.gene67595:CDS |
| TGTCAACGTGCTTTGCAGGC+AGG | 0.486337 | 5.2:-14431119 | None:intergenic |
| TAAGCTGGAAGGAAGTTTGC+TGG | 0.490814 | 5.2:+14437320 | MS.gene67595:CDS |
| TGTGCTGGGGTGTCGGAGAA+AGG | 0.492016 | 5.2:+14439635 | MS.gene67595:CDS |
| GAGGAGAGTAGGGTCATTGA+AGG | 0.494575 | 5.2:-14429213 | None:intergenic |
| GTTGATTCTGTTAATACTGA+TGG | 0.494916 | 5.2:+14435449 | MS.gene67595:CDS |
| TTGTGACAGCTGTTATTCTA+CGG | 0.496737 | 5.2:-14437233 | None:intergenic |
| TGTCATTTGCCATTGCTGAT+GGG | 0.498811 | 5.2:+14432646 | MS.gene67595:CDS |
| CAACATATAATACCTGAAGT+AGG | 0.498903 | 5.2:-14439024 | None:intergenic |
| CACGAACTGCTGCAACATCC+AGG | 0.499765 | 5.2:-14439311 | None:intergenic |
| GCTGAGGAGGGAATTGCTAA+AGG | 0.500043 | 5.2:+14437207 | MS.gene67595:CDS |
| GTTAATACTGATGGTGATGT+TGG | 0.502082 | 5.2:+14435458 | MS.gene67595:CDS |
| TGATGAATGCAGGAAGTACT+TGG | 0.502247 | 5.2:+14436590 | MS.gene67595:intron |
| TTCAGGGGAACGTACTGAGC+GGG | 0.503019 | 5.2:+14433716 | MS.gene67595:CDS |
| AGGAGGTCTTGTAACGGGTC+AGG | 0.503180 | 5.2:+14439736 | MS.gene67595:CDS |
| TTTGCATAGACTTTCGATGT+TGG | 0.504113 | 5.2:+14436137 | MS.gene67595:intron |
| TGCTAAGAAAGCTGAAATCA+AGG | 0.509077 | 5.2:+14438991 | MS.gene67595:CDS |
| CTCCGTCGAGCTGTTCGCTA+TGG | 0.511679 | 5.2:+14433121 | MS.gene67595:CDS |
| CTACCTGTGTGAGATCTAAC+GGG | 0.513935 | 5.2:-14434312 | None:intergenic |
| GTCTATCCTCACCTTAACTA+AGG | 0.519096 | 5.2:-14433559 | None:intergenic |
| GTGGTAAAAGCAATATATAC+TGG | 0.521169 | 5.2:+14435416 | MS.gene67595:CDS |
| TGTTACTGTCAGCAAGTTGG+TGG | 0.522495 | 5.2:+14434626 | MS.gene67595:intron |
| GAACATACTTTACAGCCAAA+GGG | 0.526626 | 5.2:-14430645 | None:intergenic |
| AAGAAGCCATTAGCTGGGCA+TGG | 0.527805 | 5.2:+14430377 | MS.gene67595:CDS |
| ATGCTTTGGGGTCACTGAAA+GGG | 0.529281 | 5.2:+14439696 | MS.gene67595:CDS |
| TTCTGGGAAATGGGTGACAC+AGG | 0.529618 | 5.2:+14430796 | MS.gene67595:CDS |
| ATTGCTGATGGGTCTCGTCC+CGG | 0.532789 | 5.2:+14432657 | MS.gene67595:CDS |
| GTATCTCTCACGCGCTTCGC+CGG | 0.533290 | 5.2:-14429131 | None:intergenic |
| TAAACAAGAAGCCATTAGCT+GGG | 0.537126 | 5.2:+14430372 | MS.gene67595:CDS |
| AGGAACCGACATTGAGTGGC+CGG | 0.537230 | 5.2:+14429112 | MS.gene67595:CDS |
| AATTTGAAACTATCATCTGT+TGG | 0.537269 | 5.2:-14434704 | None:intergenic |
| AGAACATACTTTACAGCCAA+AGG | 0.538832 | 5.2:-14430646 | None:intergenic |
| CCTACCTGTGTGAGATCTAA+CGG | 0.539043 | 5.2:-14434313 | None:intergenic |
| ATGTCTAACCACAGTTCAGT+AGG | 0.539072 | 5.2:+14431073 | MS.gene67595:intron |
| AACATATAATACCTGAAGTA+GGG | 0.539900 | 5.2:-14439023 | None:intergenic |
| GGAAGGAAGTTTGCTGGATG+AGG | 0.540536 | 5.2:+14437326 | MS.gene67595:CDS |
| AATGCTTTGGGGTCACTGAA+AGG | 0.543277 | 5.2:+14439695 | MS.gene67595:CDS |
| CCTGCAAAGCACGTTGACAC+TGG | 0.543375 | 5.2:+14431123 | MS.gene67595:CDS |
| GAACTTGAAATGAAGCATGT+TGG | 0.543494 | 5.2:-14436172 | None:intergenic |
| TAACCAAAGACGCGGCATCT+CGG | 0.543926 | 5.2:-14430864 | None:intergenic |
| AGGAGAGTAGGGTCATTGAA+GGG | 0.545511 | 5.2:-14429212 | None:intergenic |
| CGTTAGCAAAGAGGAGAGTA+GGG | 0.548303 | 5.2:-14429223 | None:intergenic |
| CCAACTGACACAACTCTAGC+CGG | 0.548858 | 5.2:-14436983 | None:intergenic |
| ACCCAGAAGTGCATTCGAGC+TGG | 0.549128 | 5.2:+14430256 | MS.gene67595:CDS |
| CTTCACATTGGTAATGGGAC+TGG | 0.552145 | 5.2:+14436224 | MS.gene67595:CDS |
| TTTGGTGGTGATGATAAAGC+TGG | 0.555876 | 5.2:+14430558 | MS.gene67595:CDS |
| CTGAAAGGGAGATGTGGTAA+AGG | 0.558294 | 5.2:+14439710 | MS.gene67595:CDS |
| TGTAGTTTGTGCTGGGGTGT+CGG | 0.558316 | 5.2:+14439628 | MS.gene67595:CDS |
| ACAAGGTTGTAGTTTGTGCT+GGG | 0.558406 | 5.2:+14439621 | MS.gene67595:CDS |
| TGTCTCTGGACTCGTAGTCA+GGG | 0.559464 | 5.2:-14430587 | None:intergenic |
| AGCTGAAATCAAGGCCAAGA+TGG | 0.559778 | 5.2:+14439000 | MS.gene67595:CDS |
| CCGGCTAGAGTTGTGTCAGT+TGG | 0.560215 | 5.2:+14436983 | MS.gene67595:CDS |
| ACAGCTGTGGAACATGTTCA+GGG | 0.561456 | 5.2:+14433700 | MS.gene67595:CDS |
| CGACGTATTAAAAGCTGAAG+AGG | 0.562921 | 5.2:+14433147 | MS.gene67595:CDS |
| CTTCGCCGGCCACTCAATGT+CGG | 0.563252 | 5.2:-14429117 | None:intergenic |
| TAAACAGGGGTTATCAGTGA+TGG | 0.563816 | 5.2:+14439574 | MS.gene67595:intron |
| AATGGGACTGGTATCTCTGT+TGG | 0.564833 | 5.2:+14436236 | MS.gene67595:CDS |
| CATGGCATACAGGGTTGTTG+CGG | 0.565636 | 5.2:+14432608 | MS.gene67595:CDS |
| TCAAAATGAATTTCTGTACA+AGG | 0.566846 | 5.2:-14430829 | None:intergenic |
| CAACTACAAGTTGATGTCGA+AGG | 0.567680 | 5.2:+14434440 | MS.gene67595:CDS |
| CCAAAGGGAAGAACACGTCC+AGG | 0.567955 | 5.2:-14430630 | None:intergenic |
| GCATGTGATTCAAGAGGAGG+AGG | 0.569350 | 5.2:+14433521 | MS.gene67595:CDS |
| GGCAAACATGTATACCAGAA+AGG | 0.569840 | 5.2:+14436611 | MS.gene67595:CDS |
| TCTATTTCATCTGAATTGTG+TGG | 0.570785 | 5.2:+14437055 | MS.gene67595:CDS |
| TGATGCATCACGCATAAATG+AGG | 0.574360 | 5.2:+14440348 | MS.gene67595:CDS |
| TAAAATTGACATGGCATACA+GGG | 0.576644 | 5.2:+14432599 | MS.gene67595:CDS |
| GCCGAAGCCATGCGTATCAA+GGG | 0.577052 | 5.2:+14436849 | MS.gene67595:CDS |
| TGAGCAGCAAGTAGATGAAG+CGG | 0.577455 | 5.2:+14437296 | MS.gene67595:CDS |
| CATAATGTTCAAGTTTATGG+AGG | 0.577824 | 5.2:+14436194 | MS.gene67595:CDS |
| ACTACGAGTCCAGAGACATA+TGG | 0.578092 | 5.2:+14430592 | MS.gene67595:CDS |
| CGGCCATATTCTGGGAAAGT+CGG | 0.580129 | 5.2:+14432561 | MS.gene67595:CDS |
| GTTCCATATCTCAATGCAGA+TGG | 0.580307 | 5.2:-14430899 | None:intergenic |
| GCTGATCTAGCTGTTAAAGA+TGG | 0.581410 | 5.2:+14439255 | MS.gene67595:CDS |
| AAGCACGTTGACACTGGCAT+GGG | 0.581424 | 5.2:+14431129 | MS.gene67595:CDS |
| AGAAGCCATTAGCTGGGCAT+GGG | 0.583711 | 5.2:+14430378 | MS.gene67595:CDS |
| ACATTTCAAAATAAGTGTGA+TGG | 0.584569 | 5.2:-14430321 | None:intergenic |
| CAGGGATTTAAGAGAGCCAT+CGG | 0.586238 | 5.2:-14431100 | None:intergenic |
| ATCACGCATAAATGAGGCTA+TGG | 0.587205 | 5.2:+14440354 | MS.gene67595:CDS |
| GATGAAGCGGCTAAGCTGGA+AGG | 0.587596 | 5.2:+14437309 | MS.gene67595:CDS |
| GTAGCATAAATGTTGTCTGA+TGG | 0.588340 | 5.2:-14430531 | None:intergenic |
| CACTGAGGAATCTACAAACA+AGG | 0.589743 | 5.2:+14439604 | MS.gene67595:CDS |
| AAAGCACGTTGACACTGGCA+TGG | 0.589998 | 5.2:+14431128 | MS.gene67595:CDS |
| TGTCAGGAACCGACATTGAG+TGG | 0.592532 | 5.2:+14429108 | MS.gene67595:CDS |
| ATTTACAGGCAACTGGTGCT+CGG | 0.594779 | 5.2:+14432541 | MS.gene67595:intron |
| AGATGTGGTAAAGGAAAAGG+AGG | 0.595385 | 5.2:+14439719 | MS.gene67595:CDS |
| CAGAAGTGCATTCGAGCTGG+TGG | 0.598259 | 5.2:+14430259 | MS.gene67595:CDS |
| TTCTGGGAAAGTCGGACCAA+GGG | 0.599667 | 5.2:+14432569 | MS.gene67595:CDS |
| AGTGTTGTGGCAAATGTGCT+GGG | 0.603198 | 5.2:+14433456 | MS.gene67595:CDS |
| TTGGATGTAAATGCAAAGGA+GGG | 0.603719 | 5.2:+14436819 | MS.gene67595:CDS |
| ACTCTCCTCTTTGCTAACGC+CGG | 0.603866 | 5.2:+14429227 | MS.gene67595:CDS |
| CCGGACCGGCGTTAGCAAAG+AGG | 0.604298 | 5.2:-14429232 | None:intergenic |
| TTTCGTTCTCAGGGTCAGCA+AGG | 0.607814 | 5.2:-14437024 | None:intergenic |
| TGGCAACAAAGTAGTATGCA+AGG | 0.607863 | 5.2:+14436256 | MS.gene67595:CDS |
| CCGCAGACCCTTGATACGCA+TGG | 0.609092 | 5.2:-14436856 | None:intergenic |
| GGAGAGTAGGGTCATTGAAG+GGG | 0.610058 | 5.2:-14429211 | None:intergenic |
| TGTCTAACCACAGTTCAGTA+GGG | 0.613871 | 5.2:+14431074 | MS.gene67595:intron |
| GGAGGTTTCGTGCTTCACAT+TGG | 0.619470 | 5.2:+14436212 | MS.gene67595:CDS |
| TGCGAAATTTAAGACAGCTG+TGG | 0.620526 | 5.2:+14433687 | MS.gene67595:CDS |
| AGTTGGTGGTGCTATTGTCA+TGG | 0.620882 | 5.2:+14434640 | MS.gene67595:CDS |
| GTCCATAGCGAACAGCTCGA+CGG | 0.621482 | 5.2:-14433123 | None:intergenic |
| ACAAGCTTCTATGCTGAGCA+AGG | 0.625524 | 5.2:+14435497 | MS.gene67595:CDS |
| ATTGGATGTAAATGCAAAGG+AGG | 0.628352 | 5.2:+14436818 | MS.gene67595:CDS |
| GTCTTAGGACCATGAGAGTG+TGG | 0.631834 | 5.2:+14435397 | MS.gene67595:intron |
| TCAGGGGAACGTACTGAGCG+GGG | 0.634186 | 5.2:+14433717 | MS.gene67595:CDS |
| GTGTGTGCATGTATGGTTAG+CGG | 0.634249 | 5.2:-14436469 | None:intergenic |
| GGGACGAGACCCATCAGCAA+TGG | 0.635525 | 5.2:-14432655 | None:intergenic |
| GACGTATTAAAAGCTGAAGA+GGG | 0.636943 | 5.2:+14433148 | MS.gene67595:CDS |
| TAGGCATGTGATTCAAGAGG+AGG | 0.642062 | 5.2:+14433518 | MS.gene67595:CDS |
| ATTTCATCTGAATTGTGTGG+CGG | 0.642488 | 5.2:+14437058 | MS.gene67595:CDS |
| AGTGGCTGAGTAATGCTTTG+GGG | 0.644347 | 5.2:+14439684 | MS.gene67595:CDS |
| GTCTCTGGACTCGTAGTCAG+GGG | 0.645675 | 5.2:-14430586 | None:intergenic |
| ATTCTGGGAAAGTCGGACCA+AGG | 0.646320 | 5.2:+14432568 | MS.gene67595:CDS |
| CACAACGATCTTGACGACGT+GGG | 0.646477 | 5.2:+14430286 | MS.gene67595:CDS |
| AGGAAAAGGAGGTCTTGTAA+CGG | 0.647670 | 5.2:+14439730 | MS.gene67595:CDS |
| TGAATTGGATGTAAATGCAA+AGG | 0.649794 | 5.2:+14436815 | MS.gene67595:CDS |
| CATTAGGCATGTGATTCAAG+AGG | 0.650394 | 5.2:+14433515 | MS.gene67595:CDS |
| GTCATTATTAACCAAAGACG+CGG | 0.655004 | 5.2:-14430872 | None:intergenic |
| GGGTCACTGAAAGGGAGATG+TGG | 0.655092 | 5.2:+14439704 | MS.gene67595:CDS |
| GCACAACGATCTTGACGACG+TGG | 0.662521 | 5.2:+14430285 | MS.gene67595:CDS |
| GGATGTTGCAGCAGTTCGTG+AGG | 0.665110 | 5.2:+14439314 | MS.gene67595:CDS |
| CAGTTCAGTAGGGAGGCCGA+TGG | 0.666367 | 5.2:+14431084 | MS.gene67595:intron |
| CAAGGTTGTAGTTTGTGCTG+GGG | 0.666393 | 5.2:+14439622 | MS.gene67595:CDS |
| ATGGGTGACACAGGTCCGTG+TGG | 0.668329 | 5.2:+14430805 | MS.gene67595:CDS |
| AGGGTCATTGAAGGGGACGA+CGG | 0.669299 | 5.2:-14429204 | None:intergenic |
| GGATGCAGATAAAATTGACA+TGG | 0.670809 | 5.2:+14432590 | MS.gene67595:CDS |
| ATTTCTGTACAAGGTCCACA+CGG | 0.677167 | 5.2:-14430820 | None:intergenic |
| AATCAGGCTTGTAAGTGTTG+TGG | 0.679087 | 5.2:+14433443 | MS.gene67595:intron |
| ACATATTTCAAACACACGAG+AGG | 0.690196 | 5.2:+14437164 | MS.gene67595:CDS |
| AAGGGAAGAACACGTCCAGG+AGG | 0.692145 | 5.2:-14430627 | None:intergenic |
| AAATAACCTGAATAAAGACA+AGG | 0.695023 | 5.2:-14430921 | None:intergenic |
| GGGGAACGTACTGAGCGGGG+AGG | 0.695954 | 5.2:+14433720 | MS.gene67595:CDS |
| AGCTTCTATGCTGAGCAAGG+TGG | 0.702055 | 5.2:+14435500 | MS.gene67595:CDS |
| CAGCTGTGGAACATGTTCAG+GGG | 0.704327 | 5.2:+14433701 | MS.gene67595:CDS |
| TGGATGTAAATGCAAAGGAG+GGG | 0.709884 | 5.2:+14436820 | MS.gene67595:CDS |
| CCATGCGTATCAAGGGTCTG+CGG | 0.712151 | 5.2:+14436856 | MS.gene67595:CDS |
| GTTCAGGGGAACGTACTGAG+CGG | 0.716267 | 5.2:+14433715 | MS.gene67595:CDS |
| CTAACCACAGTTCAGTAGGG+AGG | 0.721171 | 5.2:+14431077 | MS.gene67595:intron |
| GTAAATTGGATGTATCAGAG+TGG | 0.743531 | 5.2:+14439666 | MS.gene67595:CDS |
| GTTCCCGTTAGATCTCACAC+AGG | 0.766218 | 5.2:+14434309 | MS.gene67595:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 14429107 | 14440417 | 14429107 | ID=MS.gene67595 |
| chr5.2 | mRNA | 14429107 | 14440417 | 14429107 | ID=MS.gene67595.t1;Parent=MS.gene67595 |
| chr5.2 | exon | 14429107 | 14429248 | 14429107 | ID=MS.gene67595.t1.exon1;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14429107 | 14429248 | 14429107 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14430176 | 14430414 | 14430176 | ID=MS.gene67595.t1.exon2;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14430176 | 14430414 | 14430176 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14430519 | 14430659 | 14430519 | ID=MS.gene67595.t1.exon3;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14430519 | 14430659 | 14430519 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14430790 | 14430936 | 14430790 | ID=MS.gene67595.t1.exon4;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14430790 | 14430936 | 14430790 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14431087 | 14431239 | 14431087 | ID=MS.gene67595.t1.exon5;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14431087 | 14431239 | 14431087 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14432549 | 14432678 | 14432549 | ID=MS.gene67595.t1.exon6;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14432549 | 14432678 | 14432549 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14433086 | 14433182 | 14433086 | ID=MS.gene67595.t1.exon7;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14433086 | 14433182 | 14433086 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14433449 | 14433569 | 14433449 | ID=MS.gene67595.t1.exon8;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14433449 | 14433569 | 14433449 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14433682 | 14433741 | 14433682 | ID=MS.gene67595.t1.exon9;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14433682 | 14433741 | 14433682 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14434280 | 14434330 | 14434280 | ID=MS.gene67595.t1.exon10;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14434280 | 14434330 | 14434280 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14434422 | 14434517 | 14434422 | ID=MS.gene67595.t1.exon11;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14434422 | 14434517 | 14434422 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14434638 | 14434739 | 14434638 | ID=MS.gene67595.t1.exon12;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14434638 | 14434739 | 14434638 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14435404 | 14435526 | 14435404 | ID=MS.gene67595.t1.exon13;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14435404 | 14435526 | 14435404 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14436146 | 14436277 | 14436146 | ID=MS.gene67595.t1.exon14;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14436146 | 14436277 | 14436146 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14436441 | 14436512 | 14436441 | ID=MS.gene67595.t1.exon15;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14436441 | 14436512 | 14436441 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14436602 | 14436677 | 14436602 | ID=MS.gene67595.t1.exon16;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14436602 | 14436677 | 14436602 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14436751 | 14436893 | 14436751 | ID=MS.gene67595.t1.exon17;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14436751 | 14436893 | 14436751 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14436971 | 14437079 | 14436971 | ID=MS.gene67595.t1.exon18;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14436971 | 14437079 | 14436971 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14437160 | 14437347 | 14437160 | ID=MS.gene67595.t1.exon19;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14437160 | 14437347 | 14437160 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14438944 | 14439033 | 14438944 | ID=MS.gene67595.t1.exon20;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14438944 | 14439033 | 14438944 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14439180 | 14439362 | 14439180 | ID=MS.gene67595.t1.exon21;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14439180 | 14439362 | 14439180 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14439581 | 14439757 | 14439581 | ID=MS.gene67595.t1.exon22;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14439581 | 14439757 | 14439581 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| chr5.2 | exon | 14440343 | 14440417 | 14440343 | ID=MS.gene67595.t1.exon23;Parent=MS.gene67595.t1 |
| chr5.2 | CDS | 14440343 | 14440417 | 14440343 | ID=cds.MS.gene67595.t1;Parent=MS.gene67595.t1 |
| Gene Sequence |
| Protein sequence |
