Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69757.t1 | XP_003601436.2 | 77.2 | 92 | 20 | 1 | 26 | 117 | 108 | 198 | 4.20E-32 | 147.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69757.t1 | G7J7C7 | 77.2 | 92 | 20 | 1 | 26 | 117 | 108 | 198 | 3.0e-32 | 147.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69757 | MS.gene77468 | PPI |
| MS.gene69757 | MS.gene71531 | PPI |
| MS.gene70443 | MS.gene69757 | PPI |
| MS.gene69757 | MS.gene044323 | PPI |
| MS.gene044361 | MS.gene69757 | PPI |
| MS.gene79115 | MS.gene69757 | PPI |
| MS.gene69757 | MS.gene71284 | PPI |
| MS.gene70430 | MS.gene69757 | PPI |
| MS.gene69757 | MS.gene045214 | PPI |
| MS.gene044376 | MS.gene69757 | PPI |
| MS.gene044363 | MS.gene69757 | PPI |
| MS.gene69757 | MS.gene71282 | PPI |
| MS.gene69757 | MS.gene71524 | PPI |
| MS.gene69757 | MS.gene71528 | PPI |
| MS.gene69757 | MS.gene77464 | PPI |
| MS.gene77472 | MS.gene69757 | PPI |
| MS.gene70418 | MS.gene69757 | PPI |
| MS.gene69757 | MS.gene044326 | PPI |
| MS.gene69757 | MS.gene70427 | PPI |
| MS.gene69757 | MS.gene70424 | PPI |
| MS.gene69757 | MS.gene049263 | PPI |
| MS.gene77466 | MS.gene69757 | PPI |
| MS.gene044370 | MS.gene69757 | PPI |
| MS.gene69757 | MS.gene70476 | PPI |
| MS.gene25704 | MS.gene69757 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69757.t1 | MTR_3g080680 | 82.353 | 85 | 14 | 1 | 33 | 117 | 115 | 198 | 1.14e-46 | 149 |
| MS.gene69757.t1 | MTR_8g461300 | 54.082 | 98 | 40 | 2 | 25 | 117 | 101 | 198 | 3.30e-23 | 89.7 |
| MS.gene69757.t1 | MTR_3g082420 | 48.980 | 98 | 47 | 2 | 23 | 117 | 124 | 221 | 8.86e-23 | 89.4 |
| MS.gene69757.t1 | MTR_3g082340 | 48.980 | 98 | 47 | 2 | 23 | 117 | 125 | 222 | 1.54e-22 | 88.6 |
| MS.gene69757.t1 | MTR_3g083150 | 45.918 | 98 | 47 | 4 | 22 | 117 | 118 | 211 | 6.98e-13 | 62.8 |
| MS.gene69757.t1 | MTR_3g083100 | 45.745 | 94 | 40 | 5 | 32 | 117 | 83 | 173 | 5.41e-12 | 60.1 |
| MS.gene69757.t1 | MTR_3g083030 | 44.681 | 94 | 43 | 5 | 25 | 117 | 144 | 229 | 7.67e-12 | 60.5 |
| MS.gene69757.t1 | MTR_3g083050 | 44.681 | 94 | 43 | 5 | 25 | 117 | 121 | 206 | 7.79e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGGAATCTACCTGCTTA+TGG | 0.235704 | 3.4:+77220334 | MS.gene69757:intron |
| TCTGATCTCAGGTGGTTTAA+TGG | 0.243396 | 3.4:-77221962 | None:intergenic |
| AATAGATTCTACCATTAATA+AGG | 0.262811 | 3.4:-77221822 | None:intergenic |
| TGCACCCATGCCCTTATTAA+TGG | 0.282700 | 3.4:+77221811 | MS.gene69757:CDS |
| GCTTATGGATATGGTTGTTT+TGG | 0.286009 | 3.4:+77220349 | MS.gene69757:CDS |
| AATCTACCTGCTTATGGATA+TGG | 0.331529 | 3.4:+77220340 | MS.gene69757:CDS |
| CCATGCAAATAACAATTATC+AGG | 0.370914 | 3.4:+77221673 | MS.gene69757:CDS |
| TCGGATATGTGAAGGGATCT+TGG | 0.430201 | 3.4:-77221599 | None:intergenic |
| TGGAGAGTGTTTCGAGAGTA+GGG | 0.456595 | 3.4:-77221631 | None:intergenic |
| GCTTGGAAAGTTGTTAAAGC+AGG | 0.466031 | 3.4:-77221892 | None:intergenic |
| ATAGATTCTACCATTAATAA+GGG | 0.476198 | 3.4:-77221821 | None:intergenic |
| TTGGAGAGTGTTTCGAGAGT+AGG | 0.477252 | 3.4:-77221632 | None:intergenic |
| CCTGATAATTGTTATTTGCA+TGG | 0.481860 | 3.4:-77221673 | None:intergenic |
| GAGAGTAGGGCGAACATCAT+CGG | 0.484219 | 3.4:-77221618 | None:intergenic |
| AACACTCTCCAAGCTTGCAT+TGG | 0.485739 | 3.4:+77221643 | MS.gene69757:CDS |
| AGGCCATGAAACACAAAAGT+TGG | 0.488464 | 3.4:-77221781 | None:intergenic |
| GTGGCACACTCTCTGATCTC+AGG | 0.491079 | 3.4:-77221973 | None:intergenic |
| GTAATAGTCCAATGCAAGCT+TGG | 0.503651 | 3.4:-77221651 | None:intergenic |
| TTCTACCATTAATAAGGGCA+TGG | 0.508172 | 3.4:-77221816 | None:intergenic |
| ATGGCACACTCTTTGACCAC+AGG | 0.540193 | 3.4:-77221943 | None:intergenic |
| CTTGGAAAGTTGTTAAAGCA+GGG | 0.540365 | 3.4:-77221891 | None:intergenic |
| AAACAACCATATCCATAAGC+AGG | 0.551051 | 3.4:-77220346 | None:intergenic |
| GGGCATGGGTGCACTTGACA+AGG | 0.587845 | 3.4:-77221801 | None:intergenic |
| GAACATCATCGGATATGTGA+AGG | 0.588800 | 3.4:-77221607 | None:intergenic |
| GAACACAGCATACTTCAGCT+TGG | 0.589049 | 3.4:-77221909 | None:intergenic |
| TCTACCATTAATAAGGGCAT+GGG | 0.597706 | 3.4:-77221815 | None:intergenic |
| AGTTGTTAAAGCAGGGGTGT+CGG | 0.599691 | 3.4:-77221884 | None:intergenic |
| GCACACTCTCTGATCTCAGG+TGG | 0.621362 | 3.4:-77221970 | None:intergenic |
| TTGGAAAGTTGTTAAAGCAG+GGG | 0.623852 | 3.4:-77221890 | None:intergenic |
| AACATCATCGGATATGTGAA+GGG | 0.631978 | 3.4:-77221606 | None:intergenic |
| TGTTCGAGACAAACAACCTG+TGG | 0.674826 | 3.4:+77221927 | MS.gene69757:CDS |
| TGGAGTGTATTAGATTGTAG+TGG | 0.705380 | 3.4:-77221992 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTTACTTAAAAAATTATA+AGG | - | chr3.4:77220957-77220976 | None:intergenic | 10.0% |
| !! | ATAAAATCAAGTAATTAAAA+AGG | - | chr3.4:77220529-77220548 | None:intergenic | 10.0% |
| !! | TTCTTCATTATATTATATTA+GGG | + | chr3.4:77221757-77221776 | MS.gene69757:intron | 10.0% |
| !!! | ACATTTTTTTTTTTTTTTTG+AGG | + | chr3.4:77220783-77220802 | MS.gene69757:intron | 10.0% |
| !!! | CATTTTTTTTTTTTTTTTGA+GGG | + | chr3.4:77220784-77220803 | MS.gene69757:intron | 10.0% |
| !! | ATTATTGAAATGTATATAGT+CGG | + | chr3.4:77220821-77220840 | MS.gene69757:intron | 15.0% |
| !! | CTTCTTCATTATATTATATT+AGG | + | chr3.4:77221756-77221775 | MS.gene69757:intron | 15.0% |
| !!! | CTTTCTTTTAAAAATTTCAA+GGG | - | chr3.4:77221179-77221198 | None:intergenic | 15.0% |
| !!! | GAATTGCAATTTTTTATTTA+TGG | + | chr3.4:77220698-77220717 | MS.gene69757:intron | 15.0% |
| !!! | TCTTTCTTTTAAAAATTTCA+AGG | - | chr3.4:77221180-77221199 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAAATGTCCC+TGG | - | chr3.4:77220780-77220799 | None:intergenic | 20.0% |
| !! | AATAGATTCTACCATTAATA+AGG | - | chr3.4:77221825-77221844 | None:intergenic | 20.0% |
| !! | ACATGTTTAATCAATATTCT+TGG | + | chr3.4:77220121-77220140 | MS.gene69757:intron | 20.0% |
| !! | AGAAGAACAATTAATTAGTT+TGG | - | chr3.4:77221741-77221760 | None:intergenic | 20.0% |
| !! | ATAGATTCTACCATTAATAA+GGG | - | chr3.4:77221824-77221843 | None:intergenic | 20.0% |
| !! | ATATGTAGCAATAAAATCAA+AGG | - | chr3.4:77220176-77220195 | None:intergenic | 20.0% |
| !! | ATCAAAGATTATATTTATGC+AGG | + | chr3.4:77221566-77221585 | MS.gene69757:intron | 20.0% |
| !! | ATCAAGTAATTAAAAAGGAA+AGG | - | chr3.4:77220524-77220543 | None:intergenic | 20.0% |
| !! | ATTATTGAGAAATTTAACGA+GGG | + | chr3.4:77220987-77221006 | MS.gene69757:intron | 20.0% |
| !! | CACAAAAATTAATTGATATC+TGG | + | chr3.4:77221048-77221067 | MS.gene69757:intron | 20.0% |
| !! | GTGTAGTTAATTAAATATGA+TGG | + | chr3.4:77220410-77220429 | MS.gene69757:intron | 20.0% |
| !! | GTTTAATGTGTTAAAAAGAT+AGG | - | chr3.4:77221157-77221176 | None:intergenic | 20.0% |
| !! | TATTATTGAGAAATTTAACG+AGG | + | chr3.4:77220986-77221005 | MS.gene69757:intron | 20.0% |
| !! | TATTCTTGGAGATTTATAAA+TGG | + | chr3.4:77220135-77220154 | MS.gene69757:intron | 20.0% |
| !! | TTAAAATTGGACTGTATTAA+AGG | - | chr3.4:77220633-77220652 | None:intergenic | 20.0% |
| !!! | AATTCAATTTTGTTCAATCT+TGG | - | chr3.4:77220683-77220702 | None:intergenic | 20.0% |
| !!! | GAATATTGATTAAACATGTA+AGG | - | chr3.4:77220120-77220139 | None:intergenic | 20.0% |
| ! | AAGATTATATTTATGCAGGA+TGG | + | chr3.4:77221570-77221589 | MS.gene69757:intron | 25.0% |
| ! | AAGTAATTAAAAAGGAAAGG+AGG | - | chr3.4:77220521-77220540 | None:intergenic | 25.0% |
| ! | ACCAAATAACCAACATTTAT+TGG | + | chr3.4:77221125-77221144 | MS.gene69757:intron | 25.0% |
| ! | AGTAATTAAAAAGGAAAGGA+GGG | - | chr3.4:77220520-77220539 | None:intergenic | 25.0% |
| ! | ATACATTTCAATAATGTCTC+TGG | - | chr3.4:77220816-77220835 | None:intergenic | 25.0% |
| ! | ATTGATTAAACATGTAAGGA+TGG | - | chr3.4:77220116-77220135 | None:intergenic | 25.0% |
| ! | CCAGGTTTCAAAATTAAAAT+TGG | - | chr3.4:77220646-77220665 | None:intergenic | 25.0% |
| ! | TAAACTCAAGTAACAACTTA+TGG | - | chr3.4:77220555-77220574 | None:intergenic | 25.0% |
| ! | TCAATATACCAAAATTACCA+AGG | + | chr3.4:77221220-77221239 | MS.gene69757:intron | 25.0% |
| !! | ATCATAAATGCGATGATTTT+AGG | - | chr3.4:77221500-77221519 | None:intergenic | 25.0% |
| !! | ATTTATGGTGAATTTAGCTT+TGG | + | chr3.4:77220713-77220732 | MS.gene69757:intron | 25.0% |
| !! | CAACTCAAAAATTGTTGTTA+AGG | + | chr3.4:77221521-77221540 | MS.gene69757:intron | 25.0% |
| !! | CAATTAATTTTTGTGTGAAC+TGG | - | chr3.4:77221043-77221062 | None:intergenic | 25.0% |
| !!! | AACAATTTTTTAGAGGGAAT+TGG | + | chr3.4:77221402-77221421 | MS.gene69757:intron | 25.0% |
| !!! | ACAAGCAAACAATTTTTTAG+AGG | + | chr3.4:77221395-77221414 | MS.gene69757:intron | 25.0% |
| !!! | ACAATTTTTTAGAGGGAATT+GGG | + | chr3.4:77221403-77221422 | MS.gene69757:intron | 25.0% |
| !!! | CAAGCAAACAATTTTTTAGA+GGG | + | chr3.4:77221396-77221415 | MS.gene69757:intron | 25.0% |
| !!! | CCAATTTTAATTTTGAAACC+TGG | + | chr3.4:77220643-77220662 | MS.gene69757:intron | 25.0% |
| !!! | GGTAATTTTGGTATATTGAA+AGG | - | chr3.4:77221219-77221238 | None:intergenic | 25.0% |
| !!! | TTTTTAAGTAAGTTGACATG+AGG | + | chr3.4:77220963-77220982 | MS.gene69757:intron | 25.0% |
| AGGATTTAGCCAATAAATGT+TGG | - | chr3.4:77221137-77221156 | None:intergenic | 30.0% | |
| AGGTAGGTTTAAAAGTTAGA+TGG | - | chr3.4:77220267-77220286 | None:intergenic | 30.0% | |
| CCATGCAAATAACAATTATC+AGG | + | chr3.4:77221673-77221692 | MS.gene69757:CDS | 30.0% | |
| GAAACCTGGTTTATACTTAA+TGG | + | chr3.4:77220657-77220676 | MS.gene69757:intron | 30.0% | |
| GCAAAAGGAATACAGAATTA+GGG | - | chr3.4:77220317-77220336 | None:intergenic | 30.0% | |
| GCTTGATATATACATGGTAA+TGG | + | chr3.4:77220845-77220864 | MS.gene69757:intron | 30.0% | |
| GTAATTAAAAAGGAAAGGAG+GGG | - | chr3.4:77220519-77220538 | None:intergenic | 30.0% | |
| TAGGTTTAAAAGTTAGATGG+CGG | - | chr3.4:77220264-77220283 | None:intergenic | 30.0% | |
| TGCAAAAGGAATACAGAATT+AGG | - | chr3.4:77220318-77220337 | None:intergenic | 30.0% | |
| ! | GCCAATAAATGTTGGTTATT+TGG | - | chr3.4:77221129-77221148 | None:intergenic | 30.0% |
| ! | TAATTCTGTATTCCTTTTGC+AGG | + | chr3.4:77220317-77220336 | MS.gene69757:intron | 30.0% |
| !! | ACTTGGTTTTTACATCATGT+TGG | - | chr3.4:77221295-77221314 | None:intergenic | 30.0% |
| !! | ACTTTTGTCCTTGGTAATTT+TGG | - | chr3.4:77221231-77221250 | None:intergenic | 30.0% |
| !! | CCTGATAATTGTTATTTGCA+TGG | - | chr3.4:77221676-77221695 | None:intergenic | 30.0% |
| AAAATGTCCCTGGAATGTAA+TGG | - | chr3.4:77220770-77220789 | None:intergenic | 35.0% | |
| AAACAACCATATCCATAAGC+AGG | - | chr3.4:77220349-77220368 | None:intergenic | 35.0% | |
| AACATCATCGGATATGTGAA+GGG | - | chr3.4:77221609-77221628 | None:intergenic | 35.0% | |
| AATCTACCTGCTTATGGATA+TGG | + | chr3.4:77220340-77220359 | MS.gene69757:CDS | 35.0% | |
| AGGAATACAGAATTAGGGTT+AGG | - | chr3.4:77220312-77220331 | None:intergenic | 35.0% | |
| ATACCTGGTTAGCAAAACTA+TGG | + | chr3.4:77221322-77221341 | MS.gene69757:intron | 35.0% | |
| CTTGGAAAGTTGTTAAAGCA+GGG | - | chr3.4:77221894-77221913 | None:intergenic | 35.0% | |
| GACTATTCTTCAAGACAACA+TGG | - | chr3.4:77221478-77221497 | None:intergenic | 35.0% | |
| GCATTCTCTTCTCTTTCATA+AGG | + | chr3.4:77220461-77220480 | MS.gene69757:intron | 35.0% | |
| GGAATACAGAATTAGGGTTA+GGG | - | chr3.4:77220311-77220330 | None:intergenic | 35.0% | |
| GTGTCTTCACACATTAATGT+CGG | + | chr3.4:77220487-77220506 | MS.gene69757:intron | 35.0% | |
| TATACCACTGTGATTCACAA+AGG | - | chr3.4:77220287-77220306 | None:intergenic | 35.0% | |
| TGACATGCACGACTTTAATT+TGG | + | chr3.4:77220892-77220911 | MS.gene69757:intron | 35.0% | |
| TTCTACCATTAATAAGGGCA+TGG | - | chr3.4:77221819-77221838 | None:intergenic | 35.0% | |
| TTGGAAAGTTGTTAAAGCAG+GGG | - | chr3.4:77221893-77221912 | None:intergenic | 35.0% | |
| TTGGCCATTAAGTATAAACC+AGG | - | chr3.4:77220664-77220683 | None:intergenic | 35.0% | |
| TTGGTAAAGAGTAGACTCAT+TGG | - | chr3.4:77221110-77221129 | None:intergenic | 35.0% | |
| ! | ATCACATTGGCTGATGTAAT+TGG | + | chr3.4:77221265-77221284 | MS.gene69757:intron | 35.0% |
| ! | ATCTTCTTCTTCAGCTTTTG+CGG | - | chr3.4:77221860-77221879 | None:intergenic | 35.0% |
| ! | GCTTATGGATATGGTTGTTT+TGG | + | chr3.4:77220349-77220368 | MS.gene69757:CDS | 35.0% |
| ! | TCTACCATTAATAAGGGCAT+GGG | - | chr3.4:77221818-77221837 | None:intergenic | 35.0% |
| ! | TCTTCAAGACAACATGGTTT+TGG | - | chr3.4:77221472-77221491 | None:intergenic | 35.0% |
| !! | TAGTTTTGCTAACCAGGTAT+TGG | - | chr3.4:77221322-77221341 | None:intergenic | 35.0% |
| !!! | TGTACTTTTTTCACAGACTG+AGG | - | chr3.4:77220586-77220605 | None:intergenic | 35.0% |
| AAAGAGTAGACTCATTGGCA+AGG | - | chr3.4:77221105-77221124 | None:intergenic | 40.0% | |
| ACCTTTGTCCATTACATTCC+AGG | + | chr3.4:77220759-77220778 | MS.gene69757:intron | 40.0% | |
| AGGCCATGAAACACAAAAGT+TGG | - | chr3.4:77221784-77221803 | None:intergenic | 40.0% | |
| CCTTTGTCCATTACATTCCA+GGG | + | chr3.4:77220760-77220779 | MS.gene69757:intron | 40.0% | |
| GAAACATGTGAAAGTAAGCC+TGG | + | chr3.4:77220375-77220394 | MS.gene69757:intron | 40.0% | |
| GAACATCATCGGATATGTGA+AGG | - | chr3.4:77221610-77221629 | None:intergenic | 40.0% | |
| GCTTGGAAAGTTGTTAAAGC+AGG | - | chr3.4:77221895-77221914 | None:intergenic | 40.0% | |
| GTAATAGTCCAATGCAAGCT+TGG | - | chr3.4:77221654-77221673 | None:intergenic | 40.0% | |
| TCTGATCTCAGGTGGTTTAA+TGG | - | chr3.4:77221965-77221984 | None:intergenic | 40.0% | |
| TGTATTGCAAGCTTTCTCTG+TGG | - | chr3.4:77221378-77221397 | None:intergenic | 40.0% | |
| ! | ATCTGGTTCACATTAGCAAC+AGG | + | chr3.4:77221065-77221084 | MS.gene69757:intron | 40.0% |
| ! | GGTCCAACTTTTGTGTTTCA+TGG | + | chr3.4:77221778-77221797 | MS.gene69757:CDS | 40.0% |
| ! | GTCGGTGCTTGATATATACA+TGG | + | chr3.4:77220839-77220858 | MS.gene69757:intron | 40.0% |
| ! | TTCTTCAGCTTTTGCGGTAA+AGG | - | chr3.4:77221854-77221873 | None:intergenic | 40.0% |
| !! | AACCAAGTTGATCCAATACC+TGG | + | chr3.4:77221307-77221326 | MS.gene69757:intron | 40.0% |
| !! | AACCAGGTATTGGATCAACT+TGG | - | chr3.4:77221312-77221331 | None:intergenic | 40.0% |
| !! | TGACCATAGTTTTGCTAACC+AGG | - | chr3.4:77221328-77221347 | None:intergenic | 40.0% |
| !! | TTAACGAGGGATTAGTCTTG+CGG | + | chr3.4:77221000-77221019 | MS.gene69757:intron | 40.0% |
| AACACTCTCCAAGCTTGCAT+TGG | + | chr3.4:77221643-77221662 | MS.gene69757:CDS | 45.0% | |
| AGCAGGTAGATTCCTGCAAA+AGG | - | chr3.4:77220332-77220351 | None:intergenic | 45.0% | |
| CCACTGTGATTCACAAAGGT+AGG | - | chr3.4:77220283-77220302 | None:intergenic | 45.0% | |
| CCTACCTTTGTGAATCACAG+TGG | + | chr3.4:77220280-77220299 | MS.gene69757:intron | 45.0% | |
| CTGCAGCTGAAGAATCACAT+TGG | + | chr3.4:77221252-77221271 | MS.gene69757:intron | 45.0% | |
| GAACACAGCATACTTCAGCT+TGG | - | chr3.4:77221912-77221931 | None:intergenic | 45.0% | |
| TCGGATATGTGAAGGGATCT+TGG | - | chr3.4:77221602-77221621 | None:intergenic | 45.0% | |
| TGCACCCATGCCCTTATTAA+TGG | + | chr3.4:77221811-77221830 | MS.gene69757:CDS | 45.0% | |
| TGCAGGAATCTACCTGCTTA+TGG | + | chr3.4:77220334-77220353 | MS.gene69757:intron | 45.0% | |
| TGTTCGAGACAAACAACCTG+TGG | + | chr3.4:77221927-77221946 | MS.gene69757:CDS | 45.0% | |
| ! | AGCTGCAGTACTTTTGTCCT+TGG | - | chr3.4:77221240-77221259 | None:intergenic | 45.0% |
| ! | AGTTGTTAAAGCAGGGGTGT+CGG | - | chr3.4:77221887-77221906 | None:intergenic | 45.0% |
| !! | CCCTGGAATGTAATGGACAA+AGG | - | chr3.4:77220763-77220782 | None:intergenic | 45.0% |
| !! | TGGAGAGTGTTTCGAGAGTA+GGG | - | chr3.4:77221634-77221653 | None:intergenic | 45.0% |
| !! | TTGGAGAGTGTTTCGAGAGT+AGG | - | chr3.4:77221635-77221654 | None:intergenic | 45.0% |
| AGACTCATTGGCAAGGTCGT+GGG | - | chr3.4:77221098-77221117 | None:intergenic | 50.0% | |
| ATGGCACACTCTTTGACCAC+AGG | - | chr3.4:77221946-77221965 | None:intergenic | 50.0% | |
| CTACACCTAGAAGTCTGTCC+AGG | - | chr3.4:77220396-77220415 | None:intergenic | 50.0% | |
| GAGAGTAGGGCGAACATCAT+CGG | - | chr3.4:77221621-77221640 | None:intergenic | 50.0% | |
| GTAAGCCTGGACAGACTTCT+AGG | + | chr3.4:77220388-77220407 | MS.gene69757:intron | 50.0% | |
| TAGACTCATTGGCAAGGTCG+TGG | - | chr3.4:77221099-77221118 | None:intergenic | 50.0% | |
| TGTGGCGCTAACAAGCTCAT+AGG | - | chr3.4:77221360-77221379 | None:intergenic | 50.0% | |
| GCACACTCTCTGATCTCAGG+TGG | - | chr3.4:77221973-77221992 | None:intergenic | 55.0% | |
| GTGGCACACTCTCTGATCTC+AGG | - | chr3.4:77221976-77221995 | None:intergenic | 55.0% | |
| GGGCATGGGTGCACTTGACA+AGG | - | chr3.4:77221804-77221823 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 77220098 | 77222005 | 77220098 | ID=MS.gene69757 |
| chr3.4 | mRNA | 77220098 | 77222005 | 77220098 | ID=MS.gene69757.t1;Parent=MS.gene69757 |
| chr3.4 | exon | 77220098 | 77220100 | 77220098 | ID=MS.gene69757.t1.exon1;Parent=MS.gene69757.t1 |
| chr3.4 | CDS | 77220098 | 77220100 | 77220098 | ID=cds.MS.gene69757.t1;Parent=MS.gene69757.t1 |
| chr3.4 | exon | 77220339 | 77220387 | 77220339 | ID=MS.gene69757.t1.exon2;Parent=MS.gene69757.t1 |
| chr3.4 | CDS | 77220339 | 77220387 | 77220339 | ID=cds.MS.gene69757.t1;Parent=MS.gene69757.t1 |
| chr3.4 | exon | 77221588 | 77221694 | 77221588 | ID=MS.gene69757.t1.exon3;Parent=MS.gene69757.t1 |
| chr3.4 | CDS | 77221588 | 77221694 | 77221588 | ID=cds.MS.gene69757.t1;Parent=MS.gene69757.t1 |
| chr3.4 | exon | 77221778 | 77222005 | 77221778 | ID=MS.gene69757.t1.exon4;Parent=MS.gene69757.t1 |
| chr3.4 | CDS | 77221778 | 77222005 | 77221778 | ID=cds.MS.gene69757.t1;Parent=MS.gene69757.t1 |
| Gene Sequence |
| Protein sequence |
