Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70313.t1 | GAU19706.1 | 71.4 | 640 | 160 | 5 | 1 | 618 | 1 | 639 | 3.00E-253 | 884.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70313.t1 | Q6AVI0 | 28.2 | 563 | 343 | 16 | 77 | 609 | 171 | 702 | 7.0e-57 | 223.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70313.t1 | A0A2Z6LS78 | 71.4 | 640 | 160 | 5 | 1 | 618 | 1 | 639 | 2.2e-253 | 884.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene70313 | 0.807425 | 5.09E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene70313 | 0.802379 | 5.77E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene70313 | 0.802141 | 6.46E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene70313 | 0.804672 | 1.93E-49 | -1.69E-46 |
| MS.gene052190 | MS.gene70313 | 0.82057 | 6.40E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene70313 | 0.805326 | 1.41E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene70313 | 0.818747 | 1.67E-52 | -1.69E-46 |
| MS.gene052867 | MS.gene70313 | 0.803526 | 3.34E-49 | -1.69E-46 |
| MS.gene053221 | MS.gene70313 | 0.819395 | 1.19E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene70313 | 0.825352 | 4.91E-54 | -1.69E-46 |
| MS.gene053966 | MS.gene70313 | 0.808523 | 2.97E-50 | -1.69E-46 |
| MS.gene055357 | MS.gene70313 | 0.812264 | 4.63E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene70313 | 0.828908 | 6.92E-55 | -1.69E-46 |
| MS.gene05604 | MS.gene70313 | 0.806581 | 7.67E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene70313 | 0.838584 | 2.64E-57 | -1.69E-46 |
| MS.gene057693 | MS.gene70313 | 0.809563 | 1.78E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene70313 | 0.812317 | 4.50E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene70313 | 0.803044 | 4.21E-49 | -1.69E-46 |
| MS.gene058829 | MS.gene70313 | 0.815549 | 8.73E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene70313 | 0.810615 | 1.06E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene70313 | 0.810392 | 1.18E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene70313 | 0.800739 | 1.25E-48 | -1.69E-46 |
| MS.gene060781 | MS.gene70313 | 0.806581 | 7.67E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70313.t1 | AT3G42170 | 27.110 | 557 | 350 | 14 | 69 | 610 | 138 | 653 | 6.92e-58 | 206 |
| MS.gene70313.t1 | AT3G42170 | 27.110 | 557 | 350 | 14 | 69 | 610 | 160 | 675 | 1.04e-57 | 206 |
Find 89 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCCCATAACTGGTTATT+TGG | 0.145613 | 4.1:+9439624 | MS.gene70313:CDS |
| TTGTTGAGTGGGATAAATTT+AGG | 0.165670 | 4.1:+9438002 | MS.gene70313:CDS |
| TACTTTAACGGCTCATTATA+TGG | 0.197596 | 4.1:+9438210 | MS.gene70313:CDS |
| CTCATTATGAGAAGCAAATT+TGG | 0.226906 | 4.1:-9438032 | None:intergenic |
| TAAGCTTGAAGAGAGTTTAA+AGG | 0.234730 | 4.1:+9438519 | MS.gene70313:CDS |
| TCTGATGCAACTGTGATTAT+TGG | 0.250021 | 4.1:-9439522 | None:intergenic |
| CTTTCCCACTCTTCACTTGA+TGG | 0.250054 | 4.1:-9438781 | None:intergenic |
| AAATATGAACAAAATGAGTA+TGG | 0.263851 | 4.1:-9438882 | None:intergenic |
| GCTCAATTTCTTTCTAGATA+TGG | 0.267417 | 4.1:+9438055 | MS.gene70313:CDS |
| GAAGGTGATTGGTTATTTAC+AGG | 0.271369 | 4.1:+9438312 | MS.gene70313:CDS |
| TTTCATAATCAAAGGACATT+TGG | 0.290158 | 4.1:-9437879 | None:intergenic |
| TTAAACTCTCTTCAAGCTTA+AGG | 0.308627 | 4.1:-9438516 | None:intergenic |
| TGTTGAGTGGGATAAATTTA+GGG | 0.308675 | 4.1:+9438003 | MS.gene70313:CDS |
| ATTTGGATGTGTCCGGTAAA+TGG | 0.309001 | 4.1:+9438668 | MS.gene70313:CDS |
| TCTCCCATAACTGGTTATTT+GGG | 0.317025 | 4.1:+9439625 | MS.gene70313:CDS |
| GTTGTTCAAGATTTACCATT+AGG | 0.318472 | 4.1:-9439654 | None:intergenic |
| GAAAATTTGTGAATTCTTGA+TGG | 0.320622 | 4.1:+9438810 | MS.gene70313:CDS |
| TTCATAATCAAAGGACATTT+GGG | 0.323172 | 4.1:-9437878 | None:intergenic |
| ACTTGTATCTCAGCATATTC+TGG | 0.339810 | 4.1:+9437684 | MS.gene70313:CDS |
| TCGTAGCTATATTACTTTAA+CGG | 0.341643 | 4.1:+9438198 | MS.gene70313:CDS |
| TTATTTGGGTTCACACCTAA+TGG | 0.345111 | 4.1:+9439639 | MS.gene70313:CDS |
| AGATACAAGTTTGTAAAATT+CGG | 0.352972 | 4.1:-9437671 | None:intergenic |
| GAGTCAACTTGATCTTTATT+TGG | 0.355874 | 4.1:+9439398 | MS.gene70313:CDS |
| TGAGTTGAAGTAGAAGAAAA+AGG | 0.379024 | 4.1:-9439210 | None:intergenic |
| CTCTCGTACTCTCCCATAAC+TGG | 0.380193 | 4.1:+9439616 | MS.gene70313:CDS |
| GAACAAGTATAAAAGTTGTA+TGG | 0.401983 | 4.1:+9439575 | MS.gene70313:CDS |
| TCTTTATTTGGAAGAGATAG+AGG | 0.403271 | 4.1:+9439410 | MS.gene70313:CDS |
| TTCAACTCAGGATTGGAATC+TGG | 0.404305 | 4.1:+9439224 | MS.gene70313:CDS |
| AAACAGCTAGCTGGAATAGA+AGG | 0.405542 | 4.1:+9438130 | MS.gene70313:CDS |
| AAGTGCAAAGGTCATAAATA+TGG | 0.406903 | 4.1:+9439462 | MS.gene70313:CDS |
| TCCATTTCACTTTGTTGAGT+GGG | 0.411202 | 4.1:+9437991 | MS.gene70313:CDS |
| AGGCAAGAAAAGTATGTAGA+TGG | 0.411458 | 4.1:+9439372 | MS.gene70313:CDS |
| TGGCACCGATGGCTTGCATT+TGG | 0.417274 | 4.1:+9438651 | MS.gene70313:CDS |
| TCCCACTCAACAAAGTGAAA+TGG | 0.425213 | 4.1:-9437992 | None:intergenic |
| GATTGGTTATTTACAGGAAT+GGG | 0.428538 | 4.1:+9438318 | MS.gene70313:CDS |
| AAAGGTAGTAAGTGACGTAT+TGG | 0.428636 | 4.1:+9438537 | MS.gene70313:CDS |
| TTGCACTTCCAATATTCTAA+AGG | 0.433259 | 4.1:-9439447 | None:intergenic |
| TGAACCCAAATAACCAGTTA+TGG | 0.438055 | 4.1:-9439629 | None:intergenic |
| GAGCTATCAAGGAAGGTGAT+TGG | 0.442922 | 4.1:+9438301 | MS.gene70313:CDS |
| CTTCTACTTCAACTCAGGAT+TGG | 0.445475 | 4.1:+9439217 | MS.gene70313:CDS |
| ATAAGTAGAGACCCATTTAC+CGG | 0.448356 | 4.1:-9438680 | None:intergenic |
| TGCGAGTTGCCATCATTAGC+TGG | 0.451166 | 4.1:-9438382 | None:intergenic |
| CAAATTTGCTTCTCATAATG+AGG | 0.461420 | 4.1:+9438033 | MS.gene70313:CDS |
| TGATTGGTTATTTACAGGAA+TGG | 0.461963 | 4.1:+9438317 | MS.gene70313:CDS |
| TTTGGATGTGTCCGGTAAAT+GGG | 0.464336 | 4.1:+9438669 | MS.gene70313:CDS |
| TAAGTGTTGTGCTCATGTCT+TGG | 0.475565 | 4.1:+9438492 | MS.gene70313:CDS |
| TTTCCCACTCTTCACTTGAT+GGG | 0.475902 | 4.1:-9438780 | None:intergenic |
| GAACCCAAATAACCAGTTAT+GGG | 0.476358 | 4.1:-9439628 | None:intergenic |
| AGGAATATCTTGAAATAAAG+AGG | 0.479100 | 4.1:+9439352 | MS.gene70313:intron |
| ATCATAACATGGTTCGTGAA+TGG | 0.480106 | 4.1:+9437939 | MS.gene70313:CDS |
| AGTAGATTGAGAAGTAATAG+TGG | 0.482788 | 4.1:-9438848 | None:intergenic |
| CTCATTATATGGATGATCAA+TGG | 0.483240 | 4.1:+9438221 | MS.gene70313:CDS |
| AAGGACATTTGGGAATATGT+TGG | 0.484528 | 4.1:-9437868 | None:intergenic |
| AATATAGCTACGAGAAGAAG+TGG | 0.494168 | 4.1:-9438188 | None:intergenic |
| TTCCATTTCACTTTGTTGAG+TGG | 0.494574 | 4.1:+9437990 | MS.gene70313:CDS |
| TGTCAATGTGTTGAAGAAGT+TGG | 0.495655 | 4.1:+9438619 | MS.gene70313:CDS |
| TCAAGTGAAGAGTGGGAAAG+AGG | 0.498562 | 4.1:+9438784 | MS.gene70313:CDS |
| ATATGGTATTCTTGAAAGGA+TGG | 0.514469 | 4.1:+9439479 | MS.gene70313:CDS |
| GAAGAAGTTGGTGGCGGTGA+TGG | 0.519417 | 4.1:+9438631 | MS.gene70313:CDS |
| ATAAATATGGTATTCTTGAA+AGG | 0.529261 | 4.1:+9439475 | MS.gene70313:CDS |
| GATAATGATCCAGCTAATGA+TGG | 0.532662 | 4.1:+9438373 | MS.gene70313:CDS |
| GTGACGTATTGGAAAAGATA+AGG | 0.535221 | 4.1:+9438548 | MS.gene70313:CDS |
| GGCTTGCATTTGGATGTGTC+CGG | 0.544192 | 4.1:+9438661 | MS.gene70313:CDS |
| ACTGCTGCCAGGACTAAAAG+TGG | 0.552302 | 4.1:-9439547 | None:intergenic |
| CTTTATTTGGAAGAGATAGA+GGG | 0.557361 | 4.1:+9439411 | MS.gene70313:CDS |
| AACGTCAAGTAGTTTATATG+TGG | 0.558793 | 4.1:+9439182 | MS.gene70313:CDS |
| AGCTCAAAATTATCATGTGA+TGG | 0.561203 | 4.1:-9438283 | None:intergenic |
| ATACGAGATTTCATAATCAA+AGG | 0.562920 | 4.1:-9437887 | None:intergenic |
| ATCTCAGCATATTCTGGTGA+CGG | 0.564629 | 4.1:+9437690 | MS.gene70313:CDS |
| AATATGAACAAAATGAGTAT+GGG | 0.569310 | 4.1:-9438881 | None:intergenic |
| CTGCCCATCAAGTGAAGAGT+GGG | 0.571068 | 4.1:+9438777 | MS.gene70313:CDS |
| TTGTGAGTGTGTCAAACTCT+AGG | 0.579871 | 4.1:+9438584 | MS.gene70313:CDS |
| TTAGAATATTGGAAGTGCAA+AGG | 0.579944 | 4.1:+9439450 | MS.gene70313:CDS |
| ACAGTGAGAGATGTGGCGTT+GGG | 0.582337 | 4.1:+9437640 | MS.gene70313:CDS |
| TATAGCGTGATTCTTGCACT+TGG | 0.582509 | 4.1:+9439009 | MS.gene70313:CDS |
| GGTGGCGGTGATGGCACCGA+TGG | 0.585901 | 4.1:+9438640 | MS.gene70313:CDS |
| TTGTTCAAAATACTGCTGCC+AGG | 0.586609 | 4.1:-9439558 | None:intergenic |
| TACGGAGACAGTAAAAGATA+AGG | 0.592519 | 4.1:+9439098 | MS.gene70313:CDS |
| AACAGTGAGAGATGTGGCGT+TGG | 0.594987 | 4.1:+9437639 | MS.gene70313:CDS |
| CAAAGAGCTCAATCATAACA+TGG | 0.601276 | 4.1:+9437928 | MS.gene70313:CDS |
| CACATCCAAATGCAAGCCAT+CGG | 0.607045 | 4.1:-9438656 | None:intergenic |
| CAATGTGTTGAAGAAGTTGG+TGG | 0.610783 | 4.1:+9438622 | MS.gene70313:CDS |
| ACTGCCCATCAAGTGAAGAG+TGG | 0.632218 | 4.1:+9438776 | MS.gene70313:CDS |
| ATAGCGTGATTCTTGCACTT+GGG | 0.634243 | 4.1:+9439010 | MS.gene70313:CDS |
| ACAAAATGAGTATGGGACGT+AGG | 0.649232 | 4.1:-9438874 | None:intergenic |
| AGATGACACGATAAGAGACA+TGG | 0.679302 | 4.1:+9438945 | MS.gene70313:CDS |
| AAGATAAGGTGAGCAGTGCG+AGG | 0.681217 | 4.1:+9439112 | MS.gene70313:CDS |
| TGTGTTGAAGAAGTTGGTGG+CGG | 0.686517 | 4.1:+9438625 | MS.gene70313:CDS |
| GATTGCAACAGTGAGAGATG+TGG | 0.744647 | 4.1:+9437633 | MS.gene70313:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTTTTTCTATTACTA+TGG | + | chr4.1:9438351-9438370 | MS.gene70313:CDS | 10.0% |
| !! | TTTGTCAAAATTAATAAAGA+TGG | + | chr4.1:9437770-9437789 | MS.gene70313:intron | 15.0% |
| !!! | ATAAAAATCCTTTAGAATAT+TGG | + | chr4.1:9439439-9439458 | MS.gene70313:CDS | 15.0% |
| !! | AAATATGAACAAAATGAGTA+TGG | - | chr4.1:9438885-9438904 | None:intergenic | 20.0% |
| !! | AATATGAACAAAATGAGTAT+GGG | - | chr4.1:9438884-9438903 | None:intergenic | 20.0% |
| !! | AGATACAAGTTTGTAAAATT+CGG | - | chr4.1:9437674-9437693 | None:intergenic | 20.0% |
| !! | ATAAATATGGTATTCTTGAA+AGG | + | chr4.1:9439475-9439494 | MS.gene70313:CDS | 20.0% |
| !!! | ACTCATTTTGTTCATATTTT+GGG | + | chr4.1:9438886-9438905 | MS.gene70313:CDS | 20.0% |
| !!! | ATTGTTGAATTTTTGTCATT+TGG | + | chr4.1:9438258-9438277 | MS.gene70313:CDS | 20.0% |
| !!! | TACTCATTTTGTTCATATTT+TGG | + | chr4.1:9438885-9438904 | MS.gene70313:CDS | 20.0% |
| !!! | TTAAAATGTTTTTCTAGAGA+TGG | - | chr4.1:9438475-9438494 | None:intergenic | 20.0% |
| ! | ACAAAACAAAACAAAAGAGT+TGG | - | chr4.1:9439290-9439309 | None:intergenic | 25.0% |
| ! | AGCTTAAAAGGTTTAATGTT+TGG | + | chr4.1:9437741-9437760 | MS.gene70313:intron | 25.0% |
| ! | AGGAATATCTTGAAATAAAG+AGG | + | chr4.1:9439352-9439371 | MS.gene70313:intron | 25.0% |
| ! | ATACGAGATTTCATAATCAA+AGG | - | chr4.1:9437890-9437909 | None:intergenic | 25.0% |
| ! | CGAAAAATTAGGTTATGATA+CGG | + | chr4.1:9439080-9439099 | MS.gene70313:CDS | 25.0% |
| ! | GAAAATTTGTGAATTCTTGA+TGG | + | chr4.1:9438810-9438829 | MS.gene70313:CDS | 25.0% |
| ! | GAACAAGTATAAAAGTTGTA+TGG | + | chr4.1:9439575-9439594 | MS.gene70313:CDS | 25.0% |
| ! | GAGTATCTATACGAAAAATT+AGG | + | chr4.1:9439069-9439088 | MS.gene70313:CDS | 25.0% |
| ! | TCGTAGCTATATTACTTTAA+CGG | + | chr4.1:9438198-9438217 | MS.gene70313:CDS | 25.0% |
| ! | TTCATAATCAAAGGACATTT+GGG | - | chr4.1:9437881-9437900 | None:intergenic | 25.0% |
| ! | TTTCATAATCAAAGGACATT+TGG | - | chr4.1:9437882-9437901 | None:intergenic | 25.0% |
| !! | ATGATAATTTTGAGCTATCA+AGG | + | chr4.1:9438290-9438309 | MS.gene70313:CDS | 25.0% |
| !! | CTCATTTTGTTCATATTTTG+GGG | + | chr4.1:9438887-9438906 | MS.gene70313:CDS | 25.0% |
| !! | TCTTTGATTTAAACTGTCAT+AGG | + | chr4.1:9439332-9439351 | MS.gene70313:intron | 25.0% |
| !! | TTTTAAACACATGTGTTCAA+AGG | - | chr4.1:9438740-9438759 | None:intergenic | 25.0% |
| !!! | AACCTTTTAAGCTTTTTCTT+TGG | - | chr4.1:9437734-9437753 | None:intergenic | 25.0% |
| !!! | GAATTCTTGATGGTTTTTTA+TGG | + | chr4.1:9438820-9438839 | MS.gene70313:CDS | 25.0% |
| AAAAATTTGAACTTCAGACG+AGG | - | chr4.1:9439048-9439067 | None:intergenic | 30.0% | |
| AACGTCAAGTAGTTTATATG+TGG | + | chr4.1:9439182-9439201 | MS.gene70313:CDS | 30.0% | |
| AAGTGCAAAGGTCATAAATA+TGG | + | chr4.1:9439462-9439481 | MS.gene70313:CDS | 30.0% | |
| AGCTCAAAATTATCATGTGA+TGG | - | chr4.1:9438286-9438305 | None:intergenic | 30.0% | |
| AGTAGATTGAGAAGTAATAG+TGG | - | chr4.1:9438851-9438870 | None:intergenic | 30.0% | |
| ATATGGTATTCTTGAAAGGA+TGG | + | chr4.1:9439479-9439498 | MS.gene70313:CDS | 30.0% | |
| CTCATTATATGGATGATCAA+TGG | + | chr4.1:9438221-9438240 | MS.gene70313:CDS | 30.0% | |
| CTCATTATGAGAAGCAAATT+TGG | - | chr4.1:9438035-9438054 | None:intergenic | 30.0% | |
| CTCCAAAGAAAAAGCTTAAA+AGG | + | chr4.1:9437729-9437748 | MS.gene70313:CDS | 30.0% | |
| GAGTCAACTTGATCTTTATT+TGG | + | chr4.1:9439398-9439417 | MS.gene70313:CDS | 30.0% | |
| GCTCAATTTCTTTCTAGATA+TGG | + | chr4.1:9438055-9438074 | MS.gene70313:CDS | 30.0% | |
| TAAGCTTGAAGAGAGTTTAA+AGG | + | chr4.1:9438519-9438538 | MS.gene70313:CDS | 30.0% | |
| TACTTTAACGGCTCATTATA+TGG | + | chr4.1:9438210-9438229 | MS.gene70313:CDS | 30.0% | |
| TGTTGAGTGGGATAAATTTA+GGG | + | chr4.1:9438003-9438022 | MS.gene70313:CDS | 30.0% | |
| TTAAACTCTCTTCAAGCTTA+AGG | - | chr4.1:9438519-9438538 | None:intergenic | 30.0% | |
| TTGCACTTCCAATATTCTAA+AGG | - | chr4.1:9439450-9439469 | None:intergenic | 30.0% | |
| TTGTTGAGTGGGATAAATTT+AGG | + | chr4.1:9438002-9438021 | MS.gene70313:CDS | 30.0% | |
| ! | CAAATTTGCTTCTCATAATG+AGG | + | chr4.1:9438033-9438052 | MS.gene70313:CDS | 30.0% |
| ! | CTTTATTTGGAAGAGATAGA+GGG | + | chr4.1:9439411-9439430 | MS.gene70313:CDS | 30.0% |
| ! | GATTGGTTATTTACAGGAAT+GGG | + | chr4.1:9438318-9438337 | MS.gene70313:CDS | 30.0% |
| ! | TAATTTTGAGCTATCAAGGA+AGG | + | chr4.1:9438294-9438313 | MS.gene70313:CDS | 30.0% |
| ! | TCTTTATTTGGAAGAGATAG+AGG | + | chr4.1:9439410-9439429 | MS.gene70313:CDS | 30.0% |
| ! | TGAGTTGAAGTAGAAGAAAA+AGG | - | chr4.1:9439213-9439232 | None:intergenic | 30.0% |
| ! | TGATTGGTTATTTACAGGAA+TGG | + | chr4.1:9438317-9438336 | MS.gene70313:CDS | 30.0% |
| ! | TTAGAATATTGGAAGTGCAA+AGG | + | chr4.1:9439450-9439469 | MS.gene70313:CDS | 30.0% |
| ! | TTTTTCTTCTACTTCAACTC+AGG | + | chr4.1:9439212-9439231 | MS.gene70313:CDS | 30.0% |
| !! | CTTTTAAGCTTTTTCTTTGG+AGG | - | chr4.1:9437731-9437750 | None:intergenic | 30.0% |
| !! | TCGTCTGAAGTTCAAATTTT+TGG | + | chr4.1:9439047-9439066 | MS.gene70313:CDS | 30.0% |
| AAACTGAAAAAACAGCTAGC+TGG | + | chr4.1:9438121-9438140 | MS.gene70313:CDS | 35.0% | |
| AAAGGTAGTAAGTGACGTAT+TGG | + | chr4.1:9438537-9438556 | MS.gene70313:CDS | 35.0% | |
| AAGGACATTTGGGAATATGT+TGG | - | chr4.1:9437871-9437890 | None:intergenic | 35.0% | |
| AATATAGCTACGAGAAGAAG+TGG | - | chr4.1:9438191-9438210 | None:intergenic | 35.0% | |
| ACTTGTATCTCAGCATATTC+TGG | + | chr4.1:9437684-9437703 | MS.gene70313:CDS | 35.0% | |
| ATAAGTAGAGACCCATTTAC+CGG | - | chr4.1:9438683-9438702 | None:intergenic | 35.0% | |
| ATCATAACATGGTTCGTGAA+TGG | + | chr4.1:9437939-9437958 | MS.gene70313:CDS | 35.0% | |
| ATGTGTGAATGTATGACTTG+TGG | + | chr4.1:9437800-9437819 | MS.gene70313:intron | 35.0% | |
| CAAAGAGCTCAATCATAACA+TGG | + | chr4.1:9437928-9437947 | MS.gene70313:CDS | 35.0% | |
| GAACCCAAATAACCAGTTAT+GGG | - | chr4.1:9439631-9439650 | None:intergenic | 35.0% | |
| GATAATGATCCAGCTAATGA+TGG | + | chr4.1:9438373-9438392 | MS.gene70313:CDS | 35.0% | |
| GTGACGTATTGGAAAAGATA+AGG | + | chr4.1:9438548-9438567 | MS.gene70313:CDS | 35.0% | |
| TACGGAGACAGTAAAAGATA+AGG | + | chr4.1:9439098-9439117 | MS.gene70313:CDS | 35.0% | |
| TCCATTTCACTTTGTTGAGT+GGG | + | chr4.1:9437991-9438010 | MS.gene70313:CDS | 35.0% | |
| TCTCCCATAACTGGTTATTT+GGG | + | chr4.1:9439625-9439644 | MS.gene70313:CDS | 35.0% | |
| TCTGATGCAACTGTGATTAT+TGG | - | chr4.1:9439525-9439544 | None:intergenic | 35.0% | |
| TGAACCCAAATAACCAGTTA+TGG | - | chr4.1:9439632-9439651 | None:intergenic | 35.0% | |
| TGTCAATGTGTTGAAGAAGT+TGG | + | chr4.1:9438619-9438638 | MS.gene70313:CDS | 35.0% | |
| TGTGGGAAACTATTTACTTG+TGG | + | chr4.1:9437818-9437837 | MS.gene70313:intron | 35.0% | |
| TTCCATTTCACTTTGTTGAG+TGG | + | chr4.1:9437990-9438009 | MS.gene70313:CDS | 35.0% | |
| ! | AGGCAAGAAAAGTATGTAGA+TGG | + | chr4.1:9439372-9439391 | MS.gene70313:CDS | 35.0% |
| ! | GAAGGTGATTGGTTATTTAC+AGG | + | chr4.1:9438312-9438331 | MS.gene70313:CDS | 35.0% |
| ! | TGTGTGAATGTATGACTTGT+GGG | + | chr4.1:9437801-9437820 | MS.gene70313:intron | 35.0% |
| ! | TTATTTGGGTTCACACCTAA+TGG | + | chr4.1:9439639-9439658 | MS.gene70313:CDS | 35.0% |
| !! | TGTGTTTGAGTTTTCGTTGT+TGG | + | chr4.1:9438158-9438177 | MS.gene70313:CDS | 35.0% |
| AAACAGCTAGCTGGAATAGA+AGG | + | chr4.1:9438130-9438149 | MS.gene70313:CDS | 40.0% | |
| ACAAAATGAGTATGGGACGT+AGG | - | chr4.1:9438877-9438896 | None:intergenic | 40.0% | |
| AGATGACACGATAAGAGACA+TGG | + | chr4.1:9438945-9438964 | MS.gene70313:CDS | 40.0% | |
| ATAGCGTGATTCTTGCACTT+GGG | + | chr4.1:9439010-9439029 | MS.gene70313:CDS | 40.0% | |
| ATCTCAGCATATTCTGGTGA+CGG | + | chr4.1:9437690-9437709 | MS.gene70313:CDS | 40.0% | |
| ATTTGGATGTGTCCGGTAAA+TGG | + | chr4.1:9438668-9438687 | MS.gene70313:CDS | 40.0% | |
| CAATGTGTTGAAGAAGTTGG+TGG | + | chr4.1:9438622-9438641 | MS.gene70313:CDS | 40.0% | |
| CTCTCCCATAACTGGTTATT+TGG | + | chr4.1:9439624-9439643 | MS.gene70313:CDS | 40.0% | |
| CTTCTACTTCAACTCAGGAT+TGG | + | chr4.1:9439217-9439236 | MS.gene70313:CDS | 40.0% | |
| GGGAAACTATTTACTTGTGG+CGG | + | chr4.1:9437821-9437840 | MS.gene70313:intron | 40.0% | |
| TATAGCGTGATTCTTGCACT+TGG | + | chr4.1:9439009-9439028 | MS.gene70313:CDS | 40.0% | |
| TCCCACTCAACAAAGTGAAA+TGG | - | chr4.1:9437995-9438014 | None:intergenic | 40.0% | |
| TTCAACTCAGGATTGGAATC+TGG | + | chr4.1:9439224-9439243 | MS.gene70313:CDS | 40.0% | |
| TTGTGAGTGTGTCAAACTCT+AGG | + | chr4.1:9438584-9438603 | MS.gene70313:CDS | 40.0% | |
| TTGTTCAAAATACTGCTGCC+AGG | - | chr4.1:9439561-9439580 | None:intergenic | 40.0% | |
| TTTCCCACTCTTCACTTGAT+GGG | - | chr4.1:9438783-9438802 | None:intergenic | 40.0% | |
| TTTGGATGTGTCCGGTAAAT+GGG | + | chr4.1:9438669-9438688 | MS.gene70313:CDS | 40.0% | |
| ! | TAAGTGTTGTGCTCATGTCT+TGG | + | chr4.1:9438492-9438511 | MS.gene70313:CDS | 40.0% |
| ! | TGACGTTGATGCACTTTTGT+CGG | - | chr4.1:9439169-9439188 | None:intergenic | 40.0% |
| !! | TCAGAATCCACTTTTAGTCC+TGG | + | chr4.1:9439540-9439559 | MS.gene70313:CDS | 40.0% |
| CACATCCAAATGCAAGCCAT+CGG | - | chr4.1:9438659-9438678 | None:intergenic | 45.0% | |
| CTTTCCCACTCTTCACTTGA+TGG | - | chr4.1:9438784-9438803 | None:intergenic | 45.0% | |
| GAGCTATCAAGGAAGGTGAT+TGG | + | chr4.1:9438301-9438320 | MS.gene70313:CDS | 45.0% | |
| GATTGCAACAGTGAGAGATG+TGG | + | chr4.1:9437633-9437652 | MS.gene70313:CDS | 45.0% | |
| TCAAGTGAAGAGTGGGAAAG+AGG | + | chr4.1:9438784-9438803 | MS.gene70313:CDS | 45.0% | |
| ! | TTTACTTGTGGCGGAAGATC+AGG | + | chr4.1:9437830-9437849 | MS.gene70313:intron | 45.0% |
| !! | TGTGTTGAAGAAGTTGGTGG+CGG | + | chr4.1:9438625-9438644 | MS.gene70313:CDS | 45.0% |
| AACAGTGAGAGATGTGGCGT+TGG | + | chr4.1:9437639-9437658 | MS.gene70313:CDS | 50.0% | |
| AAGATAAGGTGAGCAGTGCG+AGG | + | chr4.1:9439112-9439131 | MS.gene70313:CDS | 50.0% | |
| ACAGTGAGAGATGTGGCGTT+GGG | + | chr4.1:9437640-9437659 | MS.gene70313:CDS | 50.0% | |
| ACTGCCCATCAAGTGAAGAG+TGG | + | chr4.1:9438776-9438795 | MS.gene70313:CDS | 50.0% | |
| ACTGCTGCCAGGACTAAAAG+TGG | - | chr4.1:9439550-9439569 | None:intergenic | 50.0% | |
| CTCTCGTACTCTCCCATAAC+TGG | + | chr4.1:9439616-9439635 | MS.gene70313:CDS | 50.0% | |
| CTGCCCATCAAGTGAAGAGT+GGG | + | chr4.1:9438777-9438796 | MS.gene70313:CDS | 50.0% | |
| GGCTTGCATTTGGATGTGTC+CGG | + | chr4.1:9438661-9438680 | MS.gene70313:CDS | 50.0% | |
| TGCGAGTTGCCATCATTAGC+TGG | - | chr4.1:9438385-9438404 | None:intergenic | 50.0% | |
| !! | GAAGAAGTTGGTGGCGGTGA+TGG | + | chr4.1:9438631-9438650 | MS.gene70313:CDS | 55.0% |
| !! | TGGCACCGATGGCTTGCATT+TGG | + | chr4.1:9438651-9438670 | MS.gene70313:CDS | 55.0% |
| ! | GGTGGCGGTGATGGCACCGA+TGG | + | chr4.1:9438640-9438659 | MS.gene70313:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 9437630 | 9439671 | 9437630 | ID=MS.gene70313 |
| chr4.1 | mRNA | 9437630 | 9439671 | 9437630 | ID=MS.gene70313.t1;Parent=MS.gene70313 |
| chr4.1 | exon | 9437630 | 9437750 | 9437630 | ID=MS.gene70313.t1.exon1;Parent=MS.gene70313.t1 |
| chr4.1 | CDS | 9437630 | 9437750 | 9437630 | ID=cds.MS.gene70313.t1;Parent=MS.gene70313.t1 |
| chr4.1 | exon | 9437852 | 9439269 | 9437852 | ID=MS.gene70313.t1.exon2;Parent=MS.gene70313.t1 |
| chr4.1 | CDS | 9437852 | 9439269 | 9437852 | ID=cds.MS.gene70313.t1;Parent=MS.gene70313.t1 |
| chr4.1 | exon | 9439354 | 9439671 | 9439354 | ID=MS.gene70313.t1.exon3;Parent=MS.gene70313.t1 |
| chr4.1 | CDS | 9439354 | 9439671 | 9439354 | ID=cds.MS.gene70313.t1;Parent=MS.gene70313.t1 |
| Gene Sequence |
| Protein sequence |
