Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70425.t1 | AES71816.1 | 62.8 | 239 | 24 | 4 | 1 | 206 | 1 | 207 | 1.70E-67 | 265.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70425.t1 | G7J9H7 | 62.8 | 239 | 24 | 4 | 1 | 206 | 1 | 207 | 1.2e-67 | 265.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70425 | MS.gene25704 | PPI |
| MS.gene70425 | MS.gene77468 | PPI |
| MS.gene70425 | MS.gene71531 | PPI |
| MS.gene70425 | MS.gene044323 | PPI |
| MS.gene70425 | MS.gene71282 | PPI |
| MS.gene79115 | MS.gene70425 | PPI |
| MS.gene70425 | MS.gene71284 | PPI |
| MS.gene70425 | MS.gene044376 | PPI |
| MS.gene70425 | MS.gene71528 | PPI |
| MS.gene70425 | MS.gene045214 | PPI |
| MS.gene70425 | MS.gene77466 | PPI |
| MS.gene70425 | MS.gene044361 | PPI |
| MS.gene70443 | MS.gene70425 | PPI |
| MS.gene044363 | MS.gene70425 | PPI |
| MS.gene70425 | MS.gene71524 | PPI |
| MS.gene70430 | MS.gene70425 | PPI |
| MS.gene70425 | MS.gene70424 | PPI |
| MS.gene70425 | MS.gene77464 | PPI |
| MS.gene70425 | MS.gene044326 | PPI |
| MS.gene70425 | MS.gene70427 | PPI |
| MS.gene70425 | MS.gene70476 | PPI |
| MS.gene77472 | MS.gene70425 | PPI |
| MS.gene70425 | MS.gene049263 | PPI |
| MS.gene044370 | MS.gene70425 | PPI |
| MS.gene70418 | MS.gene70425 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70425.t1 | MTR_3g083080 | 62.762 | 239 | 24 | 4 | 1 | 206 | 1 | 207 | 3.83e-93 | 271 |
| MS.gene70425.t1 | MTR_3g083030 | 40.530 | 264 | 66 | 6 | 1 | 206 | 1 | 231 | 4.86e-52 | 167 |
| MS.gene70425.t1 | MTR_3g083050 | 43.154 | 241 | 69 | 6 | 1 | 206 | 1 | 208 | 6.26e-51 | 164 |
| MS.gene70425.t1 | MTR_3g082340 | 28.400 | 250 | 105 | 9 | 1 | 204 | 1 | 222 | 5.15e-18 | 79.3 |
| MS.gene70425.t1 | MTR_3g083100 | 32.778 | 180 | 67 | 7 | 36 | 204 | 37 | 173 | 6.68e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGGTTGCAATCCCGTTAC+AGG | 0.190009 | 3.1:+66128832 | None:intergenic |
| CCGGAAAACTGTGATGAAAA+AGG | 0.252165 | 3.1:-66128862 | MS.gene70425:CDS |
| CGCCCACACATAAACATAAA+AGG | 0.266595 | 3.1:+66128724 | None:intergenic |
| TCATATTTCTTTCTCCGTTT+CGG | 0.317369 | 3.1:+66128814 | None:intergenic |
| CTGCCCTGTTACAACTTTCC+AGG | 0.349354 | 3.1:-66126556 | MS.gene70425:CDS |
| GCGATTTACGTATAAGAATA+AGG | 0.390721 | 3.1:-66128704 | MS.gene70425:CDS |
| TGTGCCTGGAAAGTTGTAAC+AGG | 0.391227 | 3.1:+66126552 | None:intergenic |
| TCTTGTTTCATACTTGTGCT+TGG | 0.413432 | 3.1:+66128368 | None:intergenic |
| CAACTTTCCAGGCACAAGTC+TGG | 0.418826 | 3.1:-66126545 | MS.gene70425:CDS |
| TTGTTCTTCTTGTGCTTGAA+AGG | 0.439470 | 3.1:+66126593 | None:intergenic |
| GAAAATTATAGCAGAGATGT+TGG | 0.447031 | 3.1:+66128390 | None:intergenic |
| CGGCGTCACCCAACCTTCTC+CGG | 0.453638 | 3.1:-66128881 | MS.gene70425:CDS |
| TATCTGTTAGGTAGGCTTCA+TGG | 0.460806 | 3.1:+66126485 | None:intergenic |
| AACGGAGAAAGAAATATGAA+TGG | 0.461826 | 3.1:-66128810 | MS.gene70425:CDS |
| AAAGGGAATCAACCTGTAAC+GGG | 0.471848 | 3.1:-66128844 | MS.gene70425:CDS |
| TGCAGAGGGGAGTGAGTTCA+AGG | 0.477142 | 3.1:+66128629 | None:intergenic |
| TCTTGTTCCAGACTTGTGCC+TGG | 0.490727 | 3.1:+66126538 | None:intergenic |
| CGGAGAAGGTTGGGTGACGC+CGG | 0.498648 | 3.1:+66128882 | None:intergenic |
| TTCTTGTTCGTGTGCTTGAA+AGG | 0.503496 | 3.1:+66128432 | None:intergenic |
| AATGTCGATGGAATTCAATA+CGG | 0.514369 | 3.1:-66128911 | MS.gene70425:CDS |
| GGAGAAGGTTGGGTGACGCC+GGG | 0.516300 | 3.1:+66128883 | None:intergenic |
| TAACGGGATTGCAACCGAAA+CGG | 0.516954 | 3.1:-66128828 | MS.gene70425:CDS |
| ACGGAGAAAGAAATATGAAT+GGG | 0.520163 | 3.1:-66128809 | MS.gene70425:CDS |
| CAAGTACAATGCTGAGAACC+AGG | 0.527031 | 3.1:-66128593 | MS.gene70425:intron |
| ATACATACAACCAGGTCTCC+AGG | 0.532645 | 3.1:+66128462 | None:intergenic |
| AAGATCATCGGTTAAGTCGA+TGG | 0.533943 | 3.1:+66128654 | None:intergenic |
| GAATTCAATACGGTTTCGCC+CGG | 0.538537 | 3.1:-66128901 | MS.gene70425:CDS |
| TTGACATTGTGAAGACAACC+TGG | 0.541774 | 3.1:-66128480 | MS.gene70425:CDS |
| ATGGCACATGATTTGACCAC+AGG | 0.549403 | 3.1:+66126504 | None:intergenic |
| AAAAGGGAATCAACCTGTAA+CGG | 0.561384 | 3.1:-66128845 | MS.gene70425:CDS |
| GTCTAACACAAACTTGCAGA+GGG | 0.571934 | 3.1:+66128615 | None:intergenic |
| ATTATAGCAGAGATGTTGGA+AGG | 0.576865 | 3.1:+66128394 | None:intergenic |
| TGATGATGTATCTGTTAGGT+AGG | 0.579470 | 3.1:+66126477 | None:intergenic |
| AGATCATCGGTTAAGTCGAT+GGG | 0.584455 | 3.1:+66128655 | None:intergenic |
| GAGTTCAAGGCAAAGATCAT+CGG | 0.594092 | 3.1:+66128642 | None:intergenic |
| GTGAAGACAACCTGGAGACC+TGG | 0.604519 | 3.1:-66128472 | MS.gene70425:CDS |
| TCCGTGTTACAGAATGTCGA+TGG | 0.606334 | 3.1:-66128923 | None:intergenic |
| AGGCACAAGTCTGGAACAAG+AGG | 0.607182 | 3.1:-66126536 | MS.gene70425:CDS |
| GCACATGATTTGACCACAGG+TGG | 0.635650 | 3.1:+66126507 | None:intergenic |
| GTAACAGGGCAGCAGTTGTG+AGG | 0.636023 | 3.1:+66126567 | None:intergenic |
| TGTCTAACACAAACTTGCAG+AGG | 0.637970 | 3.1:+66128614 | None:intergenic |
| CAAGAGGTCTGAGCCACCTG+TGG | 0.668100 | 3.1:-66126520 | MS.gene70425:CDS |
| GTGCCTGGAAAGTTGTAACA+GGG | 0.695141 | 3.1:+66126553 | None:intergenic |
| GTAATGTAATACATACAACC+AGG | 0.734534 | 3.1:+66128454 | None:intergenic |
| TCTAACACAAACTTGCAGAG+GGG | 0.776478 | 3.1:+66128616 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTAGAAATATTTTTTAA+CGG | - | chr3.1:66128422-66128441 | MS.gene70425:CDS | 10.0% |
| !! | AAAATAAGGTTTATAAGATA+TGG | + | chr3.1:66128237-66128256 | None:intergenic | 15.0% |
| !! | AATTTCAAATACAATTTCAA+AGG | - | chr3.1:66127361-66127380 | MS.gene70425:intron | 15.0% |
| !! | ATTAAAAATACAAAATGACA+TGG | + | chr3.1:66128176-66128195 | None:intergenic | 15.0% |
| !! | TATTATAAAAACAAAATGCT+TGG | + | chr3.1:66127720-66127739 | None:intergenic | 15.0% |
| !!! | AAAAAATATTTCTACAAACA+CGG | + | chr3.1:66128420-66128439 | None:intergenic | 15.0% |
| !!! | ACAGTTTATTTTAAAGAAAA+GGG | + | chr3.1:66127457-66127476 | None:intergenic | 15.0% |
| !!! | CATTTTGTATTTTTAATCTT+TGG | - | chr3.1:66128179-66128198 | MS.gene70425:intron | 15.0% |
| !!! | TAAGTGAATTTTTTTTTGTT+TGG | - | chr3.1:66127884-66127903 | MS.gene70425:intron | 15.0% |
| !!! | TACAGTTTATTTTAAAGAAA+AGG | + | chr3.1:66127458-66127477 | None:intergenic | 15.0% |
| !! | AACAAATCATTCAAATATGA+AGG | + | chr3.1:66127743-66127762 | None:intergenic | 20.0% |
| !! | AATAGTACAAGTTACATAAT+TGG | - | chr3.1:66128061-66128080 | MS.gene70425:intron | 20.0% |
| !! | ATGAAGGAAAAAAAAAAAAC+TGG | - | chr3.1:66127317-66127336 | MS.gene70425:intron | 20.0% |
| !! | GAAAAAATATTGACAAAGAT+GGG | + | chr3.1:66128580-66128599 | None:intergenic | 20.0% |
| !! | GTTTATAAGATATGGAAAAT+TGG | + | chr3.1:66128229-66128248 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTTTGGCATAATT+AGG | - | chr3.1:66127894-66127913 | MS.gene70425:intron | 20.0% |
| ! | AAAAAATTCACTTATAGCAG+AGG | + | chr3.1:66127878-66127897 | None:intergenic | 25.0% |
| ! | AAATAGAATACTTCACATCT+TGG | - | chr3.1:66128656-66128675 | MS.gene70425:CDS | 25.0% |
| ! | AATGCAGTTTAAATTCCAAT+TGG | - | chr3.1:66128352-66128371 | MS.gene70425:intron | 25.0% |
| ! | AATGCCAAAATAAATTCAAC+AGG | + | chr3.1:66128531-66128550 | None:intergenic | 25.0% |
| ! | ACTATTATGTAACCAAACAA+AGG | + | chr3.1:66128613-66128632 | None:intergenic | 25.0% |
| ! | CATAATAGTGAATTTCATGA+AGG | - | chr3.1:66127301-66127320 | MS.gene70425:intron | 25.0% |
| ! | CGAAAAAATATTGACAAAGA+TGG | + | chr3.1:66128581-66128600 | None:intergenic | 25.0% |
| ! | TTGAGTAAAAAAAAAACCAG+TGG | + | chr3.1:66127617-66127636 | None:intergenic | 25.0% |
| !! | ACTAATTTTTCTCCTGATTT+AGG | - | chr3.1:66126880-66126899 | MS.gene70425:intron | 25.0% |
| !! | ATGTTGATAGAAACATCATT+CGG | - | chr3.1:66127247-66127266 | MS.gene70425:intron | 25.0% |
| !! | CATCATGTTTAATCTTTTCT+TGG | - | chr3.1:66127150-66127169 | MS.gene70425:intron | 25.0% |
| !! | CTAATTTTTCTCCTGATTTA+GGG | - | chr3.1:66126881-66126900 | MS.gene70425:intron | 25.0% |
| !! | TTAGCCTGTTGAATTTATTT+TGG | - | chr3.1:66128524-66128543 | MS.gene70425:intron | 25.0% |
| !!! | TCTAGCTCTTTTGTTTTTTT+GGG | - | chr3.1:66128446-66128465 | MS.gene70425:CDS | 25.0% |
| !!! | TGTCTGCTTCAAATTTTTTT+TGG | - | chr3.1:66127804-66127823 | MS.gene70425:intron | 25.0% |
| AACGGAGAAAGAAATATGAA+TGG | - | chr3.1:66126591-66126610 | MS.gene70425:CDS | 30.0% | |
| AAGTGTAAAAACTGCATTAG+TGG | + | chr3.1:66127853-66127872 | None:intergenic | 30.0% | |
| ACGGAGAAAGAAATATGAAT+GGG | - | chr3.1:66126592-66126611 | MS.gene70425:CDS | 30.0% | |
| ACTACTATTTAACCAAGCAA+AGG | + | chr3.1:66128729-66128748 | None:intergenic | 30.0% | |
| CCTTCAAACAAAAGACAATT+TGG | - | chr3.1:66127562-66127581 | MS.gene70425:intron | 30.0% | |
| GAAAATTATAGCAGAGATGT+TGG | + | chr3.1:66127014-66127033 | None:intergenic | 30.0% | |
| GCGATTTACGTATAAGAATA+AGG | - | chr3.1:66126697-66126716 | MS.gene70425:intron | 30.0% | |
| GGAGATTTATAAATGCTAAC+AGG | - | chr3.1:66127171-66127190 | MS.gene70425:intron | 30.0% | |
| GTAATGTAATACATACAACC+AGG | + | chr3.1:66126950-66126969 | None:intergenic | 30.0% | |
| GTTTGAAGGACAGTTAAAAT+GGG | + | chr3.1:66127551-66127570 | None:intergenic | 30.0% | |
| TAAGAATCACAACATTTCTC+TGG | + | chr3.1:66127643-66127662 | None:intergenic | 30.0% | |
| TCATATTTCTTTCTCCGTTT+CGG | + | chr3.1:66126590-66126609 | None:intergenic | 30.0% | |
| TCCTTATTGAAATTAGCAAG+CGG | - | chr3.1:66127201-66127220 | MS.gene70425:intron | 30.0% | |
| TGCATTAGTGGAGTTAAAAA+GGG | + | chr3.1:66127841-66127860 | None:intergenic | 30.0% | |
| TGTTTGAAGGACAGTTAAAA+TGG | + | chr3.1:66127552-66127571 | None:intergenic | 30.0% | |
| TTCTGTTCAGTACAATTTCT+AGG | - | chr3.1:66128484-66128503 | MS.gene70425:CDS | 30.0% | |
| ! | AAGCCTTTTATGTTTATGTG+TGG | - | chr3.1:66126674-66126693 | MS.gene70425:intron | 30.0% |
| ! | AGCCTTTTATGTTTATGTGT+GGG | - | chr3.1:66126675-66126694 | MS.gene70425:intron | 30.0% |
| !! | CCAAATTGTCTTTTGTTTGA+AGG | + | chr3.1:66127565-66127584 | None:intergenic | 30.0% |
| !! | TTCTTGTAATTTGTTGAACC+TGG | + | chr3.1:66126829-66126848 | None:intergenic | 30.0% |
| !!! | CTCTAGCTCTTTTGTTTTTT+TGG | - | chr3.1:66128445-66128464 | MS.gene70425:CDS | 30.0% |
| !!! | CTGCTTCAAATTTTTTTTGG+AGG | - | chr3.1:66127807-66127826 | MS.gene70425:intron | 30.0% |
| AAAAGGGAATCAACCTGTAA+CGG | - | chr3.1:66126556-66126575 | MS.gene70425:CDS | 35.0% | |
| AAATTGTTACCTCACATCCT+TGG | - | chr3.1:66127681-66127700 | MS.gene70425:intron | 35.0% | |
| AACAAAATGCTTGGAGACAA+AGG | + | chr3.1:66127711-66127730 | None:intergenic | 35.0% | |
| AAGCACAAGTATGAAACAAG+AGG | - | chr3.1:66127035-66127054 | MS.gene70425:intron | 35.0% | |
| AAGCAGACATTCAAACACAA+TGG | + | chr3.1:66127793-66127812 | None:intergenic | 35.0% | |
| ATTATAGCAGAGATGTTGGA+AGG | + | chr3.1:66127010-66127029 | None:intergenic | 35.0% | |
| CAAAATTTGCACCCTAAATC+AGG | + | chr3.1:66126895-66126914 | None:intergenic | 35.0% | |
| CGGAAAACTGTGATGAAAAA+GGG | - | chr3.1:66126540-66126559 | MS.gene70425:CDS | 35.0% | |
| CTGCATTAGTGGAGTTAAAA+AGG | + | chr3.1:66127842-66127861 | None:intergenic | 35.0% | |
| CTTCATGAGAAACTATGAGT+TGG | - | chr3.1:66127392-66127411 | MS.gene70425:intron | 35.0% | |
| GGCATAATTAGGTTCACAAA+GGG | - | chr3.1:66127905-66127924 | MS.gene70425:intron | 35.0% | |
| TGGAGAATAGTCAAAGATTG+TGG | - | chr3.1:66127966-66127985 | MS.gene70425:intron | 35.0% | |
| TGGCATAATTAGGTTCACAA+AGG | - | chr3.1:66127904-66127923 | MS.gene70425:intron | 35.0% | |
| TGTTAGAAGACTTCACATCT+TGG | - | chr3.1:66128766-66128785 | MS.gene70425:CDS | 35.0% | |
| TTGTTCTTCTTGTGCTTGAA+AGG | + | chr3.1:66128811-66128830 | None:intergenic | 35.0% | |
| ! | ACAATTTCTAGGCTGTCAAT+TGG | - | chr3.1:66128495-66128514 | MS.gene70425:CDS | 35.0% |
| ! | TATAGTGAGGGTGCAAAAAA+TGG | + | chr3.1:66127418-66127437 | None:intergenic | 35.0% |
| ! | TCCGCTTGCTAATTTCAATA+AGG | + | chr3.1:66127205-66127224 | None:intergenic | 35.0% |
| ! | TCTTGTTTCATACTTGTGCT+TGG | + | chr3.1:66127036-66127055 | None:intergenic | 35.0% |
| !! | ATGACATGGTCTTTTGTTTG+AGG | + | chr3.1:66128162-66128181 | None:intergenic | 35.0% |
| !! | CCTTTTTCATCACAGTTTTC+CGG | + | chr3.1:66126542-66126561 | None:intergenic | 35.0% |
| !! | TGACATGGTCTTTTGTTTGA+GGG | + | chr3.1:66128161-66128180 | None:intergenic | 35.0% |
| !!! | ACTGGTCTTCTTTTGTCATT+CGG | - | chr3.1:66128380-66128399 | MS.gene70425:intron | 35.0% |
| AAAGGGAATCAACCTGTAAC+GGG | - | chr3.1:66126557-66126576 | MS.gene70425:CDS | 40.0% | |
| AAATTCCAATTGGCATGCAC+TGG | - | chr3.1:66128362-66128381 | MS.gene70425:intron | 40.0% | |
| AAGTATGAAACAAGAGGCCT+GGG | - | chr3.1:66127041-66127060 | MS.gene70425:intron | 40.0% | |
| ACCTAACACGTACATCATCA+TGG | - | chr3.1:66127097-66127116 | MS.gene70425:intron | 40.0% | |
| CCGGAAAACTGTGATGAAAA+AGG | - | chr3.1:66126539-66126558 | MS.gene70425:CDS | 40.0% | |
| CGCCCACACATAAACATAAA+AGG | + | chr3.1:66126680-66126699 | None:intergenic | 40.0% | |
| GAGTTCAAGGCAAAGATCAT+CGG | + | chr3.1:66126762-66126781 | None:intergenic | 40.0% | |
| GTCTAACACAAACTTGCAGA+GGG | + | chr3.1:66126789-66126808 | None:intergenic | 40.0% | |
| TAGTTGTCTAGTCCTTTGCT+TGG | - | chr3.1:66128714-66128733 | MS.gene70425:CDS | 40.0% | |
| TCGTTGTCTAGTCCTTTGTT+TGG | - | chr3.1:66128598-66128617 | MS.gene70425:CDS | 40.0% | |
| TCTAACACAAACTTGCAGAG+GGG | + | chr3.1:66126788-66126807 | None:intergenic | 40.0% | |
| TGTCTAACACAAACTTGCAG+AGG | + | chr3.1:66126790-66126809 | None:intergenic | 40.0% | |
| TTCTTGTTCGTGTGCTTGAA+AGG | + | chr3.1:66126972-66126991 | None:intergenic | 40.0% | |
| TTGACATTGTGAAGACAACC+TGG | - | chr3.1:66126921-66126940 | MS.gene70425:intron | 40.0% | |
| ! | AAATGGGTGATTTGCATGTC+AGG | + | chr3.1:66127535-66127554 | None:intergenic | 40.0% |
| ! | AAGATCATCGGTTAAGTCGA+TGG | + | chr3.1:66126750-66126769 | None:intergenic | 40.0% |
| ! | ACCATGATGATGTACGTGTT+AGG | + | chr3.1:66127101-66127120 | None:intergenic | 40.0% |
| ! | AGATCATCGGTTAAGTCGAT+GGG | + | chr3.1:66126749-66126768 | None:intergenic | 40.0% |
| ! | ATGTCAGGCTTGGTTCAAAT+GGG | + | chr3.1:66127520-66127539 | None:intergenic | 40.0% |
| ! | TGATGATGTACGTGTTAGGT+AGG | + | chr3.1:66127097-66127116 | None:intergenic | 40.0% |
| AACCAGTGGACATTTGCACA+TGG | + | chr3.1:66127603-66127622 | None:intergenic | 45.0% | |
| ATACATACAACCAGGTCTCC+AGG | + | chr3.1:66126942-66126961 | None:intergenic | 45.0% | |
| ATCCATGTGCAAATGTCCAC+TGG | - | chr3.1:66127598-66127617 | MS.gene70425:intron | 45.0% | |
| ATGGCACATGATTTGACCAC+AGG | + | chr3.1:66128900-66128919 | None:intergenic | 45.0% | |
| CAAGTACAATGCTGAGAACC+AGG | - | chr3.1:66126808-66126827 | MS.gene70425:intron | 45.0% | |
| CAAGTATGAAACAAGAGGCC+TGG | - | chr3.1:66127040-66127059 | MS.gene70425:intron | 45.0% | |
| CATTCCGTGGCTTATAGTGA+GGG | + | chr3.1:66127430-66127449 | None:intergenic | 45.0% | |
| GAATTCAATACGGTTTCGCC+CGG | - | chr3.1:66126500-66126519 | MS.gene70425:CDS | 45.0% | |
| GACTATTCTCCACAAGTCAG+TGG | + | chr3.1:66127958-66127977 | None:intergenic | 45.0% | |
| GTGCCTGGAAAGTTGTAACA+GGG | + | chr3.1:66128851-66128870 | None:intergenic | 45.0% | |
| TAACGGGATTGCAACCGAAA+CGG | - | chr3.1:66126573-66126592 | MS.gene70425:CDS | 45.0% | |
| TACGTGTTAGGTAGGCTTCA+TGG | + | chr3.1:66127089-66127108 | None:intergenic | 45.0% | |
| TGTGCCTGGAAAGTTGTAAC+AGG | + | chr3.1:66128852-66128871 | None:intergenic | 45.0% | |
| ! | ACAGTTTTCCGGAGAAGGTT+GGG | + | chr3.1:66126531-66126550 | None:intergenic | 45.0% |
| ! | CATGTCAGGCTTGGTTCAAA+TGG | + | chr3.1:66127521-66127540 | None:intergenic | 45.0% |
| ! | TCATCACAGTTTTCCGGAGA+AGG | + | chr3.1:66126536-66126555 | None:intergenic | 45.0% |
| !! | TATCCACTACCACTGACTTG+TGG | - | chr3.1:66127946-66127965 | MS.gene70425:intron | 45.0% |
| !! | TGGTCTTTTGTTTGAGGGTG+TGG | + | chr3.1:66128156-66128175 | None:intergenic | 45.0% |
| !!! | AAAAAATACATTTTAAAATA+AGG | + | chr3.1:66128251-66128270 | None:intergenic | 5.0% |
| AAAGGCAAGCCAAGGATGTG+AGG | + | chr3.1:66127693-66127712 | None:intergenic | 50.0% | |
| ACAGTGCCACGAAGCAGTTA+TGG | + | chr3.1:66128314-66128333 | None:intergenic | 50.0% | |
| AGAAAAGGGTCAGCATTCCG+TGG | + | chr3.1:66127443-66127462 | None:intergenic | 50.0% | |
| ATGGCACATGACTTGACCTC+AGG | + | chr3.1:66127070-66127089 | None:intergenic | 50.0% | |
| CAACTTTCCAGGCACAAGTC+TGG | - | chr3.1:66128856-66128875 | MS.gene70425:CDS | 50.0% | |
| CTCCATCCATAACTGCTTCG+TGG | - | chr3.1:66128305-66128324 | MS.gene70425:intron | 50.0% | |
| CTGCCCTGTTACAACTTTCC+AGG | - | chr3.1:66128845-66128864 | MS.gene70425:CDS | 50.0% | |
| GAAGACCAGTGCATGCCAAT+TGG | + | chr3.1:66128370-66128389 | None:intergenic | 50.0% | |
| GCACATGATTTGACCACAGG+TGG | + | chr3.1:66128897-66128916 | None:intergenic | 50.0% | |
| GCATTCCGTGGCTTATAGTG+AGG | + | chr3.1:66127431-66127450 | None:intergenic | 50.0% | |
| TCTCCACAAGTCAGTGGTAG+TGG | + | chr3.1:66127952-66127971 | None:intergenic | 50.0% | |
| TCTTGTTCCAGACTTGTGCC+TGG | + | chr3.1:66128866-66128885 | None:intergenic | 50.0% | |
| TGCACCCTCACTATAAGCCA+CGG | - | chr3.1:66127423-66127442 | MS.gene70425:intron | 50.0% | |
| TGCCACGAAGCAGTTATGGA+TGG | + | chr3.1:66128310-66128329 | None:intergenic | 50.0% | |
| TTCGGTTGCAATCCCGTTAC+AGG | + | chr3.1:66126572-66126591 | None:intergenic | 50.0% | |
| TTGGAGACAAAGGCAAGCCA+AGG | + | chr3.1:66127701-66127720 | None:intergenic | 50.0% | |
| ! | AGGCACAAGTCTGGAACAAG+AGG | - | chr3.1:66128865-66128884 | MS.gene70425:CDS | 50.0% |
| ! | CACAGTTTTCCGGAGAAGGT+TGG | + | chr3.1:66126532-66126551 | None:intergenic | 50.0% |
| ! | GGTGATTTGCATGTCAGGCT+TGG | + | chr3.1:66127530-66127549 | None:intergenic | 50.0% |
| ! | TGTTTGAGGGTGTGGCTTAC+AGG | + | chr3.1:66128148-66128167 | None:intergenic | 50.0% |
| GCACATGACTTGACCTCAGG+TGG | + | chr3.1:66127067-66127086 | None:intergenic | 55.0% | |
| GTAACAGGGCAGCAGTTGTG+AGG | + | chr3.1:66128837-66128856 | None:intergenic | 55.0% | |
| GTGAAGACAACCTGGAGACC+TGG | - | chr3.1:66126929-66126948 | MS.gene70425:intron | 55.0% | |
| TGCAGAGGGGAGTGAGTTCA+AGG | + | chr3.1:66126775-66126794 | None:intergenic | 55.0% | |
| CAAGAGGTCTGAGCCACCTG+TGG | - | chr3.1:66128881-66128900 | MS.gene70425:CDS | 60.0% | |
| ! | GAGGGTGTGGCTTACAGGCT+TGG | + | chr3.1:66128143-66128162 | None:intergenic | 60.0% |
| CGGAGAAGGTTGGGTGACGC+CGG | + | chr3.1:66126522-66126541 | None:intergenic | 65.0% | |
| CGGCGTCACCCAACCTTCTC+CGG | - | chr3.1:66126520-66126539 | MS.gene70425:CDS | 65.0% | |
| GACTTGACCTCAGGTGGCCC+AGG | + | chr3.1:66127061-66127080 | None:intergenic | 65.0% | |
| GGAGAAGGTTGGGTGACGCC+GGG | + | chr3.1:66126521-66126540 | None:intergenic | 65.0% | |
| CAAGAGGCCTGGGCCACCTG+AGG | - | chr3.1:66127051-66127070 | MS.gene70425:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 66126491 | 66128932 | 66126491 | ID=MS.gene70425 |
| chr3.1 | mRNA | 66126491 | 66128932 | 66126491 | ID=MS.gene70425.t1;Parent=MS.gene70425 |
| chr3.1 | exon | 66128594 | 66128932 | 66128594 | ID=MS.gene70425.t1.exon1;Parent=MS.gene70425.t1 |
| chr3.1 | CDS | 66128594 | 66128932 | 66128594 | ID=cds.MS.gene70425.t1;Parent=MS.gene70425.t1 |
| chr3.1 | exon | 66128381 | 66128521 | 66128381 | ID=MS.gene70425.t1.exon2;Parent=MS.gene70425.t1 |
| chr3.1 | CDS | 66128381 | 66128521 | 66128381 | ID=cds.MS.gene70425.t1;Parent=MS.gene70425.t1 |
| chr3.1 | exon | 66126491 | 66126631 | 66126491 | ID=MS.gene70425.t1.exon3;Parent=MS.gene70425.t1 |
| chr3.1 | CDS | 66126491 | 66126631 | 66126491 | ID=cds.MS.gene70425.t1;Parent=MS.gene70425.t1 |
| Gene Sequence |
| Protein sequence |
