Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70426.t1 | RHN69088.1 | 75.2 | 214 | 28 | 5 | 95 | 308 | 1 | 189 | 7.40E-75 | 290.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70426.t1 | A0A396IWV3 | 75.2 | 214 | 28 | 5 | 95 | 308 | 1 | 189 | 5.3e-75 | 290.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70426 | MS.gene044326 | PPI |
| MS.gene044376 | MS.gene70426 | PPI |
| MS.gene044363 | MS.gene70426 | PPI |
| MS.gene70426 | MS.gene70427 | PPI |
| MS.gene70426 | MS.gene70424 | PPI |
| MS.gene70418 | MS.gene70426 | PPI |
| MS.gene70426 | MS.gene049263 | PPI |
| MS.gene70426 | MS.gene70476 | PPI |
| MS.gene70426 | MS.gene77468 | PPI |
| MS.gene70426 | MS.gene71531 | PPI |
| MS.gene77472 | MS.gene70426 | PPI |
| MS.gene70426 | MS.gene044323 | PPI |
| MS.gene77466 | MS.gene70426 | PPI |
| MS.gene70426 | MS.gene71284 | PPI |
| MS.gene044370 | MS.gene70426 | PPI |
| MS.gene70426 | MS.gene045214 | PPI |
| MS.gene25704 | MS.gene70426 | PPI |
| MS.gene70443 | MS.gene70426 | PPI |
| MS.gene70426 | MS.gene71282 | PPI |
| MS.gene044361 | MS.gene70426 | PPI |
| MS.gene70426 | MS.gene71524 | PPI |
| MS.gene70426 | MS.gene71528 | PPI |
| MS.gene79115 | MS.gene70426 | PPI |
| MS.gene70430 | MS.gene70426 | PPI |
| MS.gene70426 | MS.gene77464 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70426.t1 | MTR_3g083030 | 53.556 | 239 | 77 | 8 | 95 | 308 | 1 | 230 | 1.57e-71 | 221 |
| MS.gene70426.t1 | MTR_3g083050 | 53.881 | 219 | 84 | 7 | 95 | 308 | 1 | 207 | 1.78e-62 | 197 |
| MS.gene70426.t1 | MTR_3g083080 | 48.402 | 219 | 93 | 6 | 95 | 307 | 1 | 205 | 7.06e-59 | 187 |
| MS.gene70426.t1 | MTR_1g103580 | 59.574 | 94 | 22 | 2 | 3 | 95 | 40 | 118 | 2.10e-26 | 105 |
| MS.gene70426.t1 | MTR_3g086030 | 45.946 | 111 | 47 | 4 | 124 | 234 | 6 | 103 | 7.15e-21 | 87.4 |
| MS.gene70426.t1 | MTR_3g082340 | 35.135 | 222 | 114 | 12 | 106 | 307 | 11 | 222 | 1.39e-20 | 88.6 |
| MS.gene70426.t1 | MTR_3g082420 | 35.714 | 196 | 101 | 9 | 124 | 307 | 39 | 221 | 1.76e-20 | 88.2 |
| MS.gene70426.t1 | MTR_4g029360 | 45.570 | 79 | 43 | 0 | 5 | 83 | 3 | 81 | 4.23e-18 | 82.0 |
| MS.gene70426.t1 | MTR_2g017975 | 45.882 | 85 | 46 | 0 | 4 | 88 | 53 | 137 | 1.37e-17 | 79.3 |
| MS.gene70426.t1 | MTR_2g054740 | 44.156 | 77 | 43 | 0 | 5 | 81 | 74 | 150 | 5.08e-17 | 77.8 |
| MS.gene70426.t1 | MTR_3g083150 | 33.784 | 222 | 129 | 8 | 95 | 308 | 1 | 212 | 4.43e-15 | 73.2 |
| MS.gene70426.t1 | MTR_6g081950 | 47.143 | 70 | 37 | 0 | 3 | 72 | 236 | 305 | 8.92e-15 | 73.9 |
| MS.gene70426.t1 | MTR_6g045427 | 43.038 | 79 | 45 | 0 | 4 | 82 | 41 | 119 | 1.51e-14 | 72.0 |
| MS.gene70426.t1 | MTR_2g038480 | 55.556 | 54 | 24 | 0 | 3 | 56 | 1 | 54 | 6.36e-14 | 67.8 |
| MS.gene70426.t1 | MTR_8g028785 | 39.474 | 76 | 45 | 1 | 5 | 80 | 153 | 227 | 8.28e-12 | 65.5 |
| MS.gene70426.t1 | MTR_8g006720 | 36.250 | 80 | 51 | 0 | 6 | 85 | 179 | 258 | 3.71e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 83 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGTTCCGGTTCCGGTTTC+AGG | 0.174029 | 3.1:+66132335 | None:intergenic |
| CAGCTATAGTTTGGAGCATT+TGG | 0.248854 | 3.1:-66133926 | MS.gene70426:CDS |
| TTCTTTACATTCCAGGTTGC+AGG | 0.268049 | 3.1:+66132747 | None:intergenic |
| AACCATCTTCTTTACATTCC+AGG | 0.300918 | 3.1:+66132740 | None:intergenic |
| TCCAACTTCAGTTCCGGTTC+CGG | 0.326780 | 3.1:+66132328 | None:intergenic |
| CCTCTTTCATCGCAGCTATC+CGG | 0.342132 | 3.1:+66132364 | None:intergenic |
| ATATGTATGTGGCAGGATTA+TGG | 0.345225 | 3.1:-66134046 | MS.gene70426:CDS |
| TTCGGTTCCAACTTCAGTTC+CGG | 0.351103 | 3.1:+66132322 | None:intergenic |
| GAAATACAATACTGAGAATC+AGG | 0.365773 | 3.1:-66131861 | MS.gene70426:CDS |
| CCGATTGAAGCTGCTTCAAT+AGG | 0.370949 | 3.1:+66133967 | None:intergenic |
| GCATGTTTAAGTTGCCGTTT+CGG | 0.375760 | 3.1:+66132304 | None:intergenic |
| CTCTTTCATCGCAGCTATCC+GGG | 0.391793 | 3.1:+66132365 | None:intergenic |
| ACAGGCTAGCAGCTATAGTT+TGG | 0.393956 | 3.1:-66133935 | MS.gene70426:CDS |
| TCCCCTCTGCGAGGCTGCGT+TGG | 0.405826 | 3.1:-66131885 | MS.gene70426:CDS |
| CTGCCGTGTTACAACATTCC+AGG | 0.420339 | 3.1:-66131657 | MS.gene70426:CDS |
| TCGCTTCGAGTATAGGAATA+AGG | 0.423727 | 3.1:-66132194 | MS.gene70426:CDS |
| CCGAGAATTGCAGGATTAGT+TGG | 0.424527 | 3.1:-66131956 | MS.gene70426:intron |
| CGATCACATTTAAATATAAG+AGG | 0.432066 | 3.1:+66132214 | None:intergenic |
| CCGTAATTTAAAACTTTGGC+AGG | 0.432897 | 3.1:-66133898 | MS.gene70426:CDS |
| TGCACCGTAATTTAAAACTT+TGG | 0.440024 | 3.1:-66133902 | MS.gene70426:CDS |
| CAACATTCCAGGCACAAGTC+TGG | 0.445688 | 3.1:-66131646 | MS.gene70426:CDS |
| CGCAGAGGGGAGTGAGTTGA+AGG | 0.451519 | 3.1:+66131897 | None:intergenic |
| TCGGATGACGCCGAACAAAC+AGG | 0.454507 | 3.1:+66132393 | None:intergenic |
| ATGTGCTCAAGTGGTGGATC+GGG | 0.460678 | 3.1:-66133862 | MS.gene70426:CDS |
| AATGTGATCGCTTCGAGTAT+AGG | 0.463814 | 3.1:-66132201 | MS.gene70426:CDS |
| GGATCCGATACCTGTTTGTT+CGG | 0.471624 | 3.1:-66132403 | MS.gene70426:CDS |
| AAGGCGAAGATCATCATTGA+TGG | 0.480182 | 3.1:+66131916 | None:intergenic |
| AAGAGGGAAGTGCCTGAAAC+CGG | 0.483559 | 3.1:-66132347 | MS.gene70426:CDS |
| ACCGGAACCGGAACTGAAGT+TGG | 0.497592 | 3.1:-66132329 | MS.gene70426:CDS |
| GTAGTACCGTGCTGCTGTCT+TGG | 0.498021 | 3.1:+66133798 | None:intergenic |
| TGTTGTAACACGGCAGCAGT+TGG | 0.504047 | 3.1:+66131664 | None:intergenic |
| AATTGAAAGCCAAACGAAAA+CGG | 0.504358 | 3.1:+66132059 | None:intergenic |
| CCTATTGAAGCAGCTTCAAT+CGG | 0.506621 | 3.1:-66133967 | MS.gene70426:CDS |
| CATGTGCTCAAGTGGTGGAT+CGG | 0.513875 | 3.1:-66133863 | MS.gene70426:CDS |
| CGGCGTCATCCGACCTGCCC+CGG | 0.523577 | 3.1:-66132383 | MS.gene70426:CDS |
| GTTGTAACACGGCAGCAGTT+GGG | 0.523905 | 3.1:+66131665 | None:intergenic |
| CGCAGCTATCCGGGGCAGGT+CGG | 0.524449 | 3.1:+66132374 | None:intergenic |
| TTCAATCGGAACTTCGTCAC+AGG | 0.525263 | 3.1:-66133953 | MS.gene70426:CDS |
| CTGTTATATATGTATGTGGC+AGG | 0.527275 | 3.1:-66134053 | None:intergenic |
| AACGGCAACTTAAACATGCA+TGG | 0.528024 | 3.1:-66132300 | MS.gene70426:CDS |
| TCATCGCAGCTATCCGGGGC+AGG | 0.528179 | 3.1:+66132370 | None:intergenic |
| AACTGAAGTTGGAACCGAAA+CGG | 0.529822 | 3.1:-66132318 | MS.gene70426:CDS |
| ATACATACCACCAGGTCTCC+AGG | 0.529976 | 3.1:+66131721 | None:intergenic |
| AGCTTCAGCTTCTGTTGATG+TGG | 0.530628 | 3.1:+66133998 | None:intergenic |
| CACCAACGCAGCCTCGCAGA+GGG | 0.535103 | 3.1:+66131883 | None:intergenic |
| TGTACAGTTTACCTGCAACC+TGG | 0.536530 | 3.1:-66132758 | MS.gene70426:intron |
| CTGACATTGTGAAGACAACC+TGG | 0.546641 | 3.1:-66131739 | MS.gene70426:CDS |
| GAAGTGCCTGAAACCGGAAC+CGG | 0.547790 | 3.1:-66132341 | MS.gene70426:CDS |
| CCGGATAGCTGCGATGAAAG+AGG | 0.559882 | 3.1:-66132364 | MS.gene70426:CDS |
| GAAGATCATCATTGATGGGA+AGG | 0.563367 | 3.1:+66131921 | None:intergenic |
| ATTGAAGCTGCTTCAATAGG+AGG | 0.572659 | 3.1:+66133970 | None:intergenic |
| AGATCATCATTGATGGGAAG+GGG | 0.573339 | 3.1:+66131923 | None:intergenic |
| CGGATAGCTGCGATGAAAGA+GGG | 0.573668 | 3.1:-66132363 | MS.gene70426:CDS |
| ACGGCAACTTAAACATGCAT+GGG | 0.577716 | 3.1:-66132299 | MS.gene70426:CDS |
| CAGAGCAGTCACTAATCTCA+AGG | 0.578303 | 3.1:+66132257 | None:intergenic |
| GAGGCCTGTGTCTGAGTCTG+AGG | 0.582177 | 3.1:-66131618 | MS.gene70426:CDS |
| CTCGACACGTCACAGAGGAA+TGG | 0.583542 | 3.1:-66133839 | MS.gene70426:CDS |
| AAGATCATCATTGATGGGAA+GGG | 0.584250 | 3.1:+66131922 | None:intergenic |
| GACGCCGAACAAACAGGTAT+CGG | 0.594685 | 3.1:+66132399 | None:intergenic |
| ATAGCTGTTATATATGTATG+TGG | 0.600453 | 3.1:-66134057 | None:intergenic |
| GTATGTGGCAGGATTATGGC+AGG | 0.600587 | 3.1:-66134042 | MS.gene70426:CDS |
| ACACGTCACAGAGGAATGGT+TGG | 0.601951 | 3.1:-66133835 | MS.gene70426:CDS |
| GTGAAGACAACCTGGAGACC+TGG | 0.604519 | 3.1:-66131731 | MS.gene70426:CDS |
| AGGCGAAGATCATCATTGAT+GGG | 0.608811 | 3.1:+66131917 | None:intergenic |
| ATGACCTCAGACTCAGACAC+AGG | 0.613733 | 3.1:+66131614 | None:intergenic |
| GAGCTGTTTGTACTCAGCCA+TGG | 0.614513 | 3.1:+66132138 | None:intergenic |
| TCTTTCATCGCAGCTATCCG+GGG | 0.623898 | 3.1:+66132366 | None:intergenic |
| GAATGAATCATGTGCTCAAG+TGG | 0.632940 | 3.1:-66133871 | MS.gene70426:CDS |
| TAAGGAGATTAAAGTCGCCA+TGG | 0.636681 | 3.1:-66132155 | MS.gene70426:CDS |
| ATATATAGATACGTACACTT+AGG | 0.638669 | 3.1:+66132107 | None:intergenic |
| TCACCAACGCAGCCTCGCAG+AGG | 0.646731 | 3.1:+66131882 | None:intergenic |
| TCAACTCACTCCCCTCTGCG+AGG | 0.647226 | 3.1:-66131894 | MS.gene70426:CDS |
| TACGTACACTTAGGCCGCGA+CGG | 0.647938 | 3.1:+66132116 | None:intergenic |
| GTAACACGGCAGCAGTTGGG+AGG | 0.652651 | 3.1:+66131668 | None:intergenic |
| ATGGCAGGCAGTGCAGCATG+CGG | 0.653080 | 3.1:-66134027 | MS.gene70426:CDS |
| TGAATCATGTGCTCAAGTGG+TGG | 0.655365 | 3.1:-66133868 | MS.gene70426:CDS |
| GTAATATAATACATACCACC+AGG | 0.693054 | 3.1:+66131713 | None:intergenic |
| ACCAACGCAGCCTCGCAGAG+GGG | 0.695672 | 3.1:+66131884 | None:intergenic |
| TCTTCACCAAGACAGCAGCA+CGG | 0.730053 | 3.1:-66133804 | MS.gene70426:intron |
| GAGTACAAACAGCTCCGTCG+CGG | 0.736504 | 3.1:-66132130 | MS.gene70426:CDS |
| TCGGGCTCGACACGTCACAG+AGG | 0.753673 | 3.1:-66133844 | MS.gene70426:CDS |
| GTGCCTGGAATGTTGTAACA+CGG | 0.759624 | 3.1:+66131654 | None:intergenic |
| AAGACAACCTGGAGACCTGG+TGG | 0.761347 | 3.1:-66131728 | MS.gene70426:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTTAAAATAATTTCA+AGG | + | chr3.1:66133001-66133020 | None:intergenic | 10.0% |
| !! | CAATAATGAATAAATGTAAA+TGG | + | chr3.1:66132822-66132841 | None:intergenic | 15.0% |
| !! | TTAAAATAATTTCAAGGAAT+AGG | + | chr3.1:66132995-66133014 | None:intergenic | 15.0% |
| !!! | TTAGATATTTTAAAGTTTGA+AGG | + | chr3.1:66132733-66132752 | None:intergenic | 15.0% |
| !!! | TTTTATTCTCAGAAAAATAT+AGG | + | chr3.1:66133059-66133078 | None:intergenic | 15.0% |
| !!! | AAAATATAGGAAAAAGTGTT+TGG | + | chr3.1:66133046-66133065 | None:intergenic | 20.0% |
| !!! | TTATTTTAAAAAAAGTTCCC+AGG | - | chr3.1:66133006-66133025 | MS.gene70426:intron | 20.0% |
| !!! | TTTAAAATGTAACATTGATG+CGG | - | chr3.1:66131963-66131982 | MS.gene70426:intron | 20.0% |
| ! | AATCAATTGAAAGTAACTTC+AGG | - | chr3.1:66132707-66132726 | MS.gene70426:intron | 25.0% |
| ! | ATATATAGATACGTACACTT+AGG | + | chr3.1:66133532-66133551 | None:intergenic | 25.0% |
| ! | ATTTCCTTTACAAGTTAAAG+TGG | + | chr3.1:66132469-66132488 | None:intergenic | 25.0% |
| ! | CGATCACATTTAAATATAAG+AGG | + | chr3.1:66133425-66133444 | None:intergenic | 25.0% |
| ! | GAATAAATGTAAATGGAAGA+AGG | + | chr3.1:66132815-66132834 | None:intergenic | 25.0% |
| ! | TAATCCTACTTAATCTACTT+TGG | + | chr3.1:66132338-66132357 | None:intergenic | 25.0% |
| ! | TAGGTAAAATATGTTTGACT+TGG | + | chr3.1:66132976-66132995 | None:intergenic | 25.0% |
| ! | TGGTTAATTGTTTAATTCCT+GGG | + | chr3.1:66133026-66133045 | None:intergenic | 25.0% |
| ! | TTGGTTAATTGTTTAATTCC+TGG | + | chr3.1:66133027-66133046 | None:intergenic | 25.0% |
| !! | AAGAAGATGGTTTTTACAAT+AGG | - | chr3.1:66132907-66132926 | MS.gene70426:intron | 25.0% |
| !! | AGAAGATGGTTTTTACAATA+GGG | - | chr3.1:66132908-66132927 | MS.gene70426:intron | 25.0% |
| !! | TTCTTTATTTCTTTAATCCC+TGG | + | chr3.1:66132315-66132334 | None:intergenic | 25.0% |
| !!! | CTCTTACTTAATTTTGTTTC+TGG | - | chr3.1:66133632-66133651 | MS.gene70426:intron | 25.0% |
| !!! | TTATCCACTTTAACTTGTAA+AGG | - | chr3.1:66132462-66132481 | MS.gene70426:intron | 25.0% |
| AATTGAAAGCCAAACGAAAA+CGG | + | chr3.1:66133580-66133599 | None:intergenic | 30.0% | |
| AGAACCAAAGTAGATTAAGT+AGG | - | chr3.1:66132331-66132350 | MS.gene70426:CDS | 30.0% | |
| CTTTCTATCATGCATTACAA+TGG | - | chr3.1:66132112-66132131 | MS.gene70426:CDS | 30.0% | |
| GAAATACAATACTGAGAATC+AGG | - | chr3.1:66133775-66133794 | MS.gene70426:intron | 30.0% | |
| GGATAATGCATATTTCCATT+TGG | + | chr3.1:66132448-66132467 | None:intergenic | 30.0% | |
| GTAATATAATACATACCACC+AGG | + | chr3.1:66133926-66133945 | None:intergenic | 30.0% | |
| TAATTATAACGTTCATTCCC+AGG | - | chr3.1:66132940-66132959 | MS.gene70426:intron | 30.0% | |
| TTATTGCAATTACGTTCCTT+CGG | - | chr3.1:66132836-66132855 | MS.gene70426:intron | 30.0% | |
| ! | ATCTTGTTCTTTTGCTTGAA+AGG | + | chr3.1:66133948-66133967 | None:intergenic | 30.0% |
| ! | ATGTTACATTTTAAACGACC+CGG | + | chr3.1:66131958-66131977 | None:intergenic | 30.0% |
| ! | GAAGATGGTTTTTACAATAG+GGG | - | chr3.1:66132909-66132928 | MS.gene70426:intron | 30.0% |
| ! | TGCACCGTAATTTAAAACTT+TGG | - | chr3.1:66131734-66131753 | MS.gene70426:CDS | 30.0% |
| !! | AAGATGAAGAAAGAGTATCT+TGG | + | chr3.1:66132254-66132273 | None:intergenic | 30.0% |
| !!! | CCTGCCAAAGTTTTAAATTA+CGG | + | chr3.1:66131741-66131760 | None:intergenic | 30.0% |
| AACCATCTTCTTTACATTCC+AGG | + | chr3.1:66132899-66132918 | None:intergenic | 35.0% | |
| AACCTGGAATGTAAAGAAGA+TGG | - | chr3.1:66132894-66132913 | MS.gene70426:intron | 35.0% | |
| AAGATCATCATTGATGGGAA+GGG | + | chr3.1:66133717-66133736 | None:intergenic | 35.0% | |
| AGGAACGTAATTGCGATTAT+AGG | + | chr3.1:66132795-66132814 | None:intergenic | 35.0% | |
| AGGTGTATGTGAATGTGAAT+TGG | - | chr3.1:66133174-66133193 | MS.gene70426:intron | 35.0% | |
| ATATAGACCAGATCACCAAA+TGG | - | chr3.1:66132430-66132449 | MS.gene70426:intron | 35.0% | |
| ATTACAATGGATACGAGACA+TGG | - | chr3.1:66132125-66132144 | MS.gene70426:CDS | 35.0% | |
| GAAAAAGATGACTGTGATGA+AGG | - | chr3.1:66132370-66132389 | MS.gene70426:CDS | 35.0% | |
| GGAACGTAATTGCGATTATA+GGG | + | chr3.1:66132794-66132813 | None:intergenic | 35.0% | |
| GGCTCAGATTCAAAAAGATA+AGG | - | chr3.1:66133463-66133482 | MS.gene70426:intron | 35.0% | |
| GGGTTACAAAATTTATTCCC+TGG | + | chr3.1:66133114-66133133 | None:intergenic | 35.0% | |
| GGTGTATGTGAATGTGAATT+GGG | - | chr3.1:66133175-66133194 | MS.gene70426:intron | 35.0% | |
| TCCTGAGAAAATGAATACCA+GGG | - | chr3.1:66133094-66133113 | MS.gene70426:intron | 35.0% | |
| TTACAATGGATACGAGACAT+GGG | - | chr3.1:66132126-66132145 | MS.gene70426:CDS | 35.0% | |
| TTCATCTTTCACAAACTCCA+GGG | - | chr3.1:66132266-66132285 | MS.gene70426:CDS | 35.0% | |
| TTCCTGAGAAAATGAATACC+AGG | - | chr3.1:66133093-66133112 | MS.gene70426:intron | 35.0% | |
| ! | CATATTTCCATTTGGTGATC+TGG | + | chr3.1:66132440-66132459 | None:intergenic | 35.0% |
| ! | CCGTAATTTAAAACTTTGGC+AGG | - | chr3.1:66131738-66131757 | MS.gene70426:CDS | 35.0% |
| ! | GTAGATTAAGTAGGATTAGC+AGG | - | chr3.1:66132340-66132359 | MS.gene70426:CDS | 35.0% |
| ! | TAAGTAGGATTAGCAGGATT+AGG | - | chr3.1:66132346-66132365 | MS.gene70426:CDS | 35.0% |
| ! | TCCTATTGGTGTTTGTTTGA+GGG | + | chr3.1:66133134-66133153 | None:intergenic | 35.0% |
| ! | TGTTACATTTTAAACGACCC+GGG | + | chr3.1:66131957-66131976 | None:intergenic | 35.0% |
| ! | TTCCTATTGGTGTTTGTTTG+AGG | + | chr3.1:66133135-66133154 | None:intergenic | 35.0% |
| ! | TTTTGCTTTCCGTTTTCGTT+TGG | - | chr3.1:66133568-66133587 | MS.gene70426:intron | 35.0% |
| !! | TGTTTTCCACTGTTTTGAAC+CGG | - | chr3.1:66131986-66132005 | MS.gene70426:intron | 35.0% |
| AACGGCAACTTAAACATGCA+TGG | - | chr3.1:66133336-66133355 | MS.gene70426:intron | 40.0% | |
| AACTGAAGTTGGAACCGAAA+CGG | - | chr3.1:66133318-66133337 | MS.gene70426:intron | 40.0% | |
| AAGGCGAAGATCATCATTGA+TGG | + | chr3.1:66133723-66133742 | None:intergenic | 40.0% | |
| AATGTGATCGCTTCGAGTAT+AGG | - | chr3.1:66133435-66133454 | MS.gene70426:intron | 40.0% | |
| ACCCTCAAACAAACACCAAT+AGG | - | chr3.1:66133130-66133149 | MS.gene70426:intron | 40.0% | |
| ACGGCAACTTAAACATGCAT+GGG | - | chr3.1:66133337-66133356 | MS.gene70426:intron | 40.0% | |
| ACTCCAGGGTAGAGTTTAAT+CGG | - | chr3.1:66132280-66132299 | MS.gene70426:CDS | 40.0% | |
| AGATCATCATTGATGGGAAG+GGG | + | chr3.1:66133716-66133735 | None:intergenic | 40.0% | |
| AGGCGAAGATCATCATTGAT+GGG | + | chr3.1:66133722-66133741 | None:intergenic | 40.0% | |
| ATAGGAATTGCGTGTTCATC+AGG | - | chr3.1:66133148-66133167 | MS.gene70426:intron | 40.0% | |
| ATCATTGATGTCACGAAGCT+CGG | - | chr3.1:66132210-66132229 | MS.gene70426:CDS | 40.0% | |
| ATTGAAGCTGCTTCAATAGG+AGG | + | chr3.1:66131669-66131688 | None:intergenic | 40.0% | |
| CCAACTAATCCTGCAATTCT+CGG | + | chr3.1:66133683-66133702 | None:intergenic | 40.0% | |
| CCTATTGAAGCAGCTTCAAT+CGG | - | chr3.1:66131669-66131688 | MS.gene70426:CDS | 40.0% | |
| CTTCATCTTTCACAAACTCC+AGG | - | chr3.1:66132265-66132284 | MS.gene70426:CDS | 40.0% | |
| CTTGGCATGCTGCAATTATT+TGG | + | chr3.1:66132236-66132255 | None:intergenic | 40.0% | |
| GAAGATCATCATTGATGGGA+AGG | + | chr3.1:66133718-66133737 | None:intergenic | 40.0% | |
| GAATGAATCATGTGCTCAAG+TGG | - | chr3.1:66131765-66131784 | MS.gene70426:intron | 40.0% | |
| GACTTGGAATGTAGAATCCT+GGG | + | chr3.1:66132960-66132979 | None:intergenic | 40.0% | |
| GATGAACACGCAATTCCTAT+TGG | + | chr3.1:66133148-66133167 | None:intergenic | 40.0% | |
| GATGAAGGTAGAACAAGTGA+TGG | - | chr3.1:66132385-66132404 | MS.gene70426:CDS | 40.0% | |
| TAAGGAGATTAAAGTCGCCA+TGG | - | chr3.1:66133481-66133500 | MS.gene70426:intron | 40.0% | |
| TACAAACCAATTGCTTCCGA+AGG | + | chr3.1:66132855-66132874 | None:intergenic | 40.0% | |
| TACAATGGATACGAGACATG+GGG | - | chr3.1:66132127-66132146 | MS.gene70426:CDS | 40.0% | |
| TAGGAATTGCGTGTTCATCA+GGG | - | chr3.1:66133149-66133168 | MS.gene70426:intron | 40.0% | |
| TCGCTTCGAGTATAGGAATA+AGG | - | chr3.1:66133442-66133461 | MS.gene70426:intron | 40.0% | |
| TTCTTTACATTCCAGGTTGC+AGG | + | chr3.1:66132892-66132911 | None:intergenic | 40.0% | |
| ! | AGAACAAGTGATGGAGACAT+AGG | - | chr3.1:66132394-66132413 | MS.gene70426:CDS | 40.0% |
| ! | CAGCTATAGTTTGGAGCATT+TGG | - | chr3.1:66131710-66131729 | MS.gene70426:CDS | 40.0% |
| ! | GTATCAGCTTTGTGCTTCTT+TGG | + | chr3.1:66132545-66132564 | None:intergenic | 40.0% |
| ! | TCCCTGGTATTCATTTTCTC+AGG | + | chr3.1:66133098-66133117 | None:intergenic | 40.0% |
| ! | TGACTTGGAATGTAGAATCC+TGG | + | chr3.1:66132961-66132980 | None:intergenic | 40.0% |
| !! | GCATGTTTAAGTTGCCGTTT+CGG | + | chr3.1:66133335-66133354 | None:intergenic | 40.0% |
| !! | GTTTTCCACTGTTTTGAACC+GGG | - | chr3.1:66131987-66132006 | MS.gene70426:intron | 40.0% |
| AACACATGCATATCCCAACC+CGG | + | chr3.1:66132008-66132027 | None:intergenic | 45.0% | |
| ACAGGCTAGCAGCTATAGTT+TGG | - | chr3.1:66131701-66131720 | MS.gene70426:CDS | 45.0% | |
| ACTAATCCTGCAATTCTCGG+AGG | + | chr3.1:66133680-66133699 | None:intergenic | 45.0% | |
| AGCTTCAGCTTCTGTTGATG+TGG | + | chr3.1:66131641-66131660 | None:intergenic | 45.0% | |
| AGGCACAAGTCTGGAAAAAG+AGG | - | chr3.1:66133999-66134018 | MS.gene70426:CDS | 45.0% | |
| ATTGCGTGTTCATCAGGGTT+AGG | - | chr3.1:66133154-66133173 | MS.gene70426:intron | 45.0% | |
| CAGAGCAGTCACTAATCTCA+AGG | + | chr3.1:66133382-66133401 | None:intergenic | 45.0% | |
| CCCTTCGACATTCTGCAAAA+GGG | + | chr3.1:66133215-66133234 | None:intergenic | 45.0% | |
| CCGATTGAAGCTGCTTCAAT+AGG | + | chr3.1:66131672-66131691 | None:intergenic | 45.0% | |
| CTAATCCTGCAATTCTCGGA+GGG | + | chr3.1:66133679-66133698 | None:intergenic | 45.0% | |
| CTGACATTGTGAAGACAACC+TGG | - | chr3.1:66133897-66133916 | MS.gene70426:CDS | 45.0% | |
| GGATCCGATACCTGTTTGTT+CGG | - | chr3.1:66133233-66133252 | MS.gene70426:intron | 45.0% | |
| GTGCCTGGAATGTTGTAACA+CGG | + | chr3.1:66133985-66134004 | None:intergenic | 45.0% | |
| TAATCCTGCAATTCTCGGAG+GGG | + | chr3.1:66133678-66133697 | None:intergenic | 45.0% | |
| TACGTTCCTTCGGAAGCAAT+TGG | - | chr3.1:66132846-66132865 | MS.gene70426:intron | 45.0% | |
| TCATTTGCAGAAACCACTCC+CGG | - | chr3.1:66131936-66131955 | MS.gene70426:CDS | 45.0% | |
| TCCCTTCGACATTCTGCAAA+AGG | + | chr3.1:66133216-66133235 | None:intergenic | 45.0% | |
| TCGACATTCTGCAAAAGGGA+AGG | + | chr3.1:66133211-66133230 | None:intergenic | 45.0% | |
| TGAATCATGTGCTCAAGTGG+TGG | - | chr3.1:66131768-66131787 | MS.gene70426:intron | 45.0% | |
| TGCTGAACAACAATGCGAGA+AGG | + | chr3.1:66131883-66131902 | None:intergenic | 45.0% | |
| TGTACAGTTTACCTGCAACC+TGG | - | chr3.1:66132878-66132897 | MS.gene70426:intron | 45.0% | |
| TTAATCGGCGACAAACTCCA+GGG | - | chr3.1:66132295-66132314 | MS.gene70426:CDS | 45.0% | |
| TTCAATCGGAACTTCGTCAC+AGG | - | chr3.1:66131683-66131702 | MS.gene70426:CDS | 45.0% | |
| TTCGGTTCCAACTTCAGTTC+CGG | + | chr3.1:66133317-66133336 | None:intergenic | 45.0% | |
| TTCTGCAAATGAGTGATGCC+TGG | + | chr3.1:66131928-66131947 | None:intergenic | 45.0% | |
| TTTAATCGGCGACAAACTCC+AGG | - | chr3.1:66132294-66132313 | MS.gene70426:CDS | 45.0% | |
| ! | ACAAGTGATGGAGACATAGG+TGG | - | chr3.1:66132397-66132416 | MS.gene70426:CDS | 45.0% |
| ! | CCCTTTTGCAGAATGTCGAA+GGG | - | chr3.1:66133212-66133231 | MS.gene70426:intron | 45.0% |
| ! | CCGAGAATTGCAGGATTAGT+TGG | - | chr3.1:66133680-66133699 | MS.gene70426:intron | 45.0% |
| ! | TCCCTTTTGCAGAATGTCGA+AGG | - | chr3.1:66133211-66133230 | MS.gene70426:intron | 45.0% |
| ! | TCTTTTTCCAGACTTGTGCC+TGG | + | chr3.1:66134000-66134019 | None:intergenic | 45.0% |
| ACACGTCACAGAGGAATGGT+TGG | - | chr3.1:66131801-66131820 | MS.gene70426:intron | 50.0% | |
| AGTGATGCCTGGAACACTAG+TGG | + | chr3.1:66131917-66131936 | None:intergenic | 50.0% | |
| ATACATACCACCAGGTCTCC+AGG | + | chr3.1:66133918-66133937 | None:intergenic | 50.0% | |
| ATGACCTCAGACTCAGACAC+AGG | + | chr3.1:66134025-66134044 | None:intergenic | 50.0% | |
| CAACATTCCAGGCACAAGTC+TGG | - | chr3.1:66133990-66134009 | MS.gene70426:CDS | 50.0% | |
| CATTTGCAGAAACCACTCCC+GGG | - | chr3.1:66131937-66131956 | MS.gene70426:CDS | 50.0% | |
| CCCTACATTGACAGACACCA+GGG | + | chr3.1:66132082-66132101 | None:intergenic | 50.0% | |
| CCCTGGTGTCTGTCAATGTA+GGG | - | chr3.1:66132079-66132098 | MS.gene70426:CDS | 50.0% | |
| CCTACATTGACAGACACCAG+GGG | + | chr3.1:66132081-66132100 | None:intergenic | 50.0% | |
| CCTCTTTCATCGCAGCTATC+CGG | + | chr3.1:66133275-66133294 | None:intergenic | 50.0% | |
| CCTGGTGTCTGTCAATGTAG+GGG | - | chr3.1:66132080-66132099 | MS.gene70426:CDS | 50.0% | |
| CGGATAGCTGCGATGAAAGA+GGG | - | chr3.1:66133273-66133292 | MS.gene70426:intron | 50.0% | |
| CTCTTTCATCGCAGCTATCC+GGG | + | chr3.1:66133274-66133293 | None:intergenic | 50.0% | |
| CTGCCGTGTTACAACATTCC+AGG | - | chr3.1:66133979-66133998 | MS.gene70426:CDS | 50.0% | |
| GACGCCGAACAAACAGGTAT+CGG | + | chr3.1:66133240-66133259 | None:intergenic | 50.0% | |
| GAGCTGTTTGTACTCAGCCA+TGG | + | chr3.1:66133501-66133520 | None:intergenic | 50.0% | |
| GTATGTGGCAGGATTATGGC+AGG | - | chr3.1:66131594-66131613 | MS.gene70426:CDS | 50.0% | |
| GTGATGCCTGGAACACTAGT+GGG | + | chr3.1:66131916-66131935 | None:intergenic | 50.0% | |
| GTTGTAACACGGCAGCAGTT+GGG | + | chr3.1:66133974-66133993 | None:intergenic | 50.0% | |
| TCCAACTTCAGTTCCGGTTC+CGG | + | chr3.1:66133311-66133330 | None:intergenic | 50.0% | |
| TCTTCACCAAGACAGCAGCA+CGG | - | chr3.1:66131832-66131851 | MS.gene70426:intron | 50.0% | |
| TCTTTCATCGCAGCTATCCG+GGG | + | chr3.1:66133273-66133292 | None:intergenic | 50.0% | |
| TGTTGTAACACGGCAGCAGT+TGG | + | chr3.1:66133975-66133994 | None:intergenic | 50.0% | |
| ! | CATTTTAAACGACCCGGGAG+TGG | + | chr3.1:66131952-66131971 | None:intergenic | 50.0% |
| ! | TCGCCGATTAAACTCTACCC+TGG | + | chr3.1:66132286-66132305 | None:intergenic | 50.0% |
| !! | AAGAGGGAAGTGCCTGAAAC+CGG | - | chr3.1:66133289-66133308 | MS.gene70426:intron | 50.0% |
| !! | ATGTGCTCAAGTGGTGGATC+GGG | - | chr3.1:66131774-66131793 | MS.gene70426:intron | 50.0% |
| !! | CATGTGCTCAAGTGGTGGAT+CGG | - | chr3.1:66131773-66131792 | MS.gene70426:intron | 50.0% |
| !! | CCACTGTTTTGAACCGGGTT+GGG | - | chr3.1:66131992-66132011 | MS.gene70426:intron | 50.0% |
| !! | TCCACTGTTTTGAACCGGGT+TGG | - | chr3.1:66131991-66132010 | MS.gene70426:intron | 50.0% |
| AAGACAACCTGGAGACCTGG+TGG | - | chr3.1:66133908-66133927 | MS.gene70426:CDS | 55.0% | |
| ACCGGAACCGGAACTGAAGT+TGG | - | chr3.1:66133307-66133326 | MS.gene70426:intron | 55.0% | |
| ATCACCCCTCCGAGAATTGC+AGG | - | chr3.1:66133671-66133690 | MS.gene70426:intron | 55.0% | |
| CCCAACCCGGTTCAAAACAG+TGG | + | chr3.1:66131995-66132014 | None:intergenic | 55.0% | |
| CCCCTACATTGACAGACACC+AGG | + | chr3.1:66132083-66132102 | None:intergenic | 55.0% | |
| CCCCTGGTGTCTGTCAATGT+AGG | - | chr3.1:66132078-66132097 | MS.gene70426:CDS | 55.0% | |
| CCGGATAGCTGCGATGAAAG+AGG | - | chr3.1:66133272-66133291 | MS.gene70426:intron | 55.0% | |
| CTCGACACGTCACAGAGGAA+TGG | - | chr3.1:66131797-66131816 | MS.gene70426:intron | 55.0% | |
| GAGTACAAACAGCTCCGTCG+CGG | - | chr3.1:66133506-66133525 | MS.gene70426:intron | 55.0% | |
| GTGAAGACAACCTGGAGACC+TGG | - | chr3.1:66133905-66133924 | MS.gene70426:CDS | 55.0% | |
| TACGTACACTTAGGCCGCGA+CGG | + | chr3.1:66133523-66133542 | None:intergenic | 55.0% | |
| TCAGTTCCGGTTCCGGTTTC+AGG | + | chr3.1:66133304-66133323 | None:intergenic | 55.0% | |
| TCGGATGACGCCGAACAAAC+AGG | + | chr3.1:66133246-66133265 | None:intergenic | 55.0% | |
| ! | GAAGTGCCTGAAACCGGAAC+CGG | - | chr3.1:66133295-66133314 | MS.gene70426:intron | 55.0% |
| ! | GTAGTACCGTGCTGCTGTCT+TGG | + | chr3.1:66131841-66131860 | None:intergenic | 55.0% |
| ATGGCAGGCAGTGCAGCATG+CGG | - | chr3.1:66131609-66131628 | MS.gene70426:CDS | 60.0% | |
| CTGCTGCCCACTAGTGTTCC+AGG | - | chr3.1:66131907-66131926 | MS.gene70426:CDS | 60.0% | |
| GAGGCCTGTGTCTGAGTCTG+AGG | - | chr3.1:66134018-66134037 | MS.gene70426:CDS | 60.0% | |
| GTAACACGGCAGCAGTTGGG+AGG | + | chr3.1:66133971-66133990 | None:intergenic | 60.0% | |
| TCAACTCACTCCCCTCTGCG+AGG | - | chr3.1:66133742-66133761 | MS.gene70426:intron | 60.0% | |
| ! | CGCAGAGGGGAGTGAGTTGA+AGG | + | chr3.1:66133742-66133761 | None:intergenic | 60.0% |
| ACCAACGCAGCCTCGCAGAG+GGG | + | chr3.1:66133755-66133774 | None:intergenic | 65.0% | |
| CACCAACGCAGCCTCGCAGA+GGG | + | chr3.1:66133756-66133775 | None:intergenic | 65.0% | |
| CACCAGGGGCGAGAGACTCA+TGG | + | chr3.1:66132067-66132086 | None:intergenic | 65.0% | |
| GACCATGAGTCTCTCGCCCC+TGG | - | chr3.1:66132062-66132081 | MS.gene70426:intron | 65.0% | |
| TCACCAACGCAGCCTCGCAG+AGG | + | chr3.1:66133757-66133776 | None:intergenic | 65.0% | |
| TCATCGCAGCTATCCGGGGC+AGG | + | chr3.1:66133269-66133288 | None:intergenic | 65.0% | |
| TCGGGCTCGACACGTCACAG+AGG | - | chr3.1:66131792-66131811 | MS.gene70426:intron | 65.0% | |
| CGCAGCTATCCGGGGCAGGT+CGG | + | chr3.1:66133265-66133284 | None:intergenic | 70.0% | |
| TCCCCTCTGCGAGGCTGCGT+TGG | - | chr3.1:66133751-66133770 | MS.gene70426:intron | 70.0% | |
| CGGCGTCATCCGACCTGCCC+CGG | - | chr3.1:66133253-66133272 | MS.gene70426:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 66131592 | 66134066 | 66131592 | ID=MS.gene70426 |
| chr3.1 | mRNA | 66131592 | 66134066 | 66131592 | ID=MS.gene70426.t1;Parent=MS.gene70426 |
| chr3.1 | exon | 66133805 | 66134066 | 66133805 | ID=MS.gene70426.t1.exon1;Parent=MS.gene70426.t1 |
| chr3.1 | CDS | 66133805 | 66134066 | 66133805 | ID=cds.MS.gene70426.t1;Parent=MS.gene70426.t1 |
| chr3.1 | exon | 66132755 | 66132773 | 66132755 | ID=MS.gene70426.t1.exon2;Parent=MS.gene70426.t1 |
| chr3.1 | CDS | 66132755 | 66132773 | 66132755 | ID=cds.MS.gene70426.t1;Parent=MS.gene70426.t1 |
| chr3.1 | exon | 66132074 | 66132435 | 66132074 | ID=MS.gene70426.t1.exon3;Parent=MS.gene70426.t1 |
| chr3.1 | CDS | 66132074 | 66132435 | 66132074 | ID=cds.MS.gene70426.t1;Parent=MS.gene70426.t1 |
| chr3.1 | exon | 66131858 | 66131965 | 66131858 | ID=MS.gene70426.t1.exon4;Parent=MS.gene70426.t1 |
| chr3.1 | CDS | 66131858 | 66131965 | 66131858 | ID=cds.MS.gene70426.t1;Parent=MS.gene70426.t1 |
| chr3.1 | exon | 66131592 | 66131767 | 66131592 | ID=MS.gene70426.t1.exon5;Parent=MS.gene70426.t1 |
| chr3.1 | CDS | 66131592 | 66131767 | 66131592 | ID=cds.MS.gene70426.t1;Parent=MS.gene70426.t1 |
| Gene Sequence |
| Protein sequence |
