Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70439.t1 | AES71816.1 | 60.1 | 238 | 62 | 3 | 1 | 238 | 1 | 205 | 2.80E-69 | 271.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70439.t1 | G7J9H7 | 60.1 | 238 | 62 | 3 | 1 | 238 | 1 | 205 | 2.0e-69 | 271.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene77468 | MS.gene70439 | PPI |
MS.gene71282 | MS.gene70439 | PPI |
MS.gene77472 | MS.gene70439 | PPI |
MS.gene045214 | MS.gene70439 | PPI |
MS.gene70439 | MS.gene71524 | PPI |
MS.gene71531 | MS.gene70439 | PPI |
MS.gene77466 | MS.gene70439 | PPI |
MS.gene044370 | MS.gene70439 | PPI |
MS.gene70476 | MS.gene70439 | PPI |
MS.gene25704 | MS.gene70439 | PPI |
MS.gene70439 | MS.gene044326 | PPI |
MS.gene044361 | MS.gene70439 | PPI |
MS.gene79115 | MS.gene70439 | PPI |
MS.gene70439 | MS.gene049263 | PPI |
MS.gene70443 | MS.gene70439 | PPI |
MS.gene70424 | MS.gene70439 | PPI |
MS.gene70427 | MS.gene70439 | PPI |
MS.gene71528 | MS.gene70439 | PPI |
MS.gene044376 | MS.gene70439 | PPI |
MS.gene044363 | MS.gene70439 | PPI |
MS.gene70430 | MS.gene70439 | PPI |
MS.gene77464 | MS.gene70439 | PPI |
MS.gene71284 | MS.gene70439 | PPI |
MS.gene70439 | MS.gene044323 | PPI |
MS.gene70418 | MS.gene70439 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70439.t1 | MTR_3g083030 | 66.250 | 240 | 70 | 3 | 1 | 239 | 1 | 230 | 2.09e-104 | 301 |
MS.gene70439.t1 | MTR_3g083080 | 62.185 | 238 | 57 | 3 | 1 | 238 | 1 | 205 | 4.54e-100 | 290 |
MS.gene70439.t1 | MTR_3g083050 | 53.333 | 240 | 78 | 3 | 1 | 239 | 1 | 207 | 6.98e-74 | 223 |
MS.gene70439.t1 | MTR_3g082340 | 35.628 | 247 | 125 | 8 | 1 | 238 | 1 | 222 | 1.49e-35 | 126 |
MS.gene70439.t1 | MTR_3g082420 | 38.261 | 230 | 119 | 9 | 17 | 238 | 7 | 221 | 1.53e-34 | 123 |
MS.gene70439.t1 | MTR_3g086030 | 51.852 | 108 | 44 | 1 | 54 | 161 | 4 | 103 | 3.05e-28 | 105 |
MS.gene70439.t1 | MTR_3g083150 | 36.327 | 245 | 117 | 8 | 1 | 239 | 1 | 212 | 1.66e-25 | 99.8 |
MS.gene70439.t1 | MTR_3g080680 | 38.462 | 208 | 105 | 10 | 39 | 238 | 6 | 198 | 4.29e-21 | 87.8 |
MS.gene70439.t1 | MTR_3g083100 | 42.857 | 126 | 58 | 3 | 128 | 239 | 49 | 174 | 1.33e-20 | 85.9 |
MS.gene70439.t1 | MTR_8g461300 | 38.728 | 173 | 81 | 10 | 83 | 238 | 34 | 198 | 8.52e-19 | 81.6 |
MS.gene70439.t1 | MTR_4g055800 | 30.345 | 145 | 79 | 5 | 86 | 222 | 143 | 273 | 1.40e-13 | 68.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 62 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAATTCCGGTTCGGATTTC+AGG | 0.202617 | 3.1:+66318928 | None:intergenic |
TGCAGAGGGGAGTGAGTTTA+AGG | 0.216980 | 3.1:+66318451 | None:intergenic |
TTCAGTTCCGGTGGCAATTC+CGG | 0.272860 | 3.1:+66318879 | None:intergenic |
TCGCCAGAGCTAAGCATAAA+AGG | 0.284068 | 3.1:-66318656 | MS.gene70439:CDS |
TCCGGTTCCGACTTCAGTTC+GGG | 0.301504 | 3.1:+66318897 | None:intergenic |
TCGGGTTCAGGTTGCAATTC+CGG | 0.306399 | 3.1:+66318915 | None:intergenic |
TCATATTTCTGTCTCTGTTT+CGG | 0.331334 | 3.1:+66318819 | None:intergenic |
TCCGACTTCAGTTCGGGTTC+AGG | 0.333407 | 3.1:+66318903 | None:intergenic |
TTCGGTTGCGACTTCAGTTC+CGG | 0.367780 | 3.1:+66318837 | None:intergenic |
TCCGGTTCCAACTTCAGTTC+CGG | 0.379777 | 3.1:+66318867 | None:intergenic |
TTCCGGTTCCGACTTCAGTT+CGG | 0.385258 | 3.1:+66318896 | None:intergenic |
GCGATTTACGTATAAGAATA+AGG | 0.390721 | 3.1:-66318709 | MS.gene70439:CDS |
GCAATACAATGCTAAGAATC+AGG | 0.399334 | 3.1:-66318415 | MS.gene70439:intron |
AAGGCGAAGATCATCGGTTA+TGG | 0.404672 | 3.1:+66318470 | None:intergenic |
GAAAATTATAACAGGTCTGT+TGG | 0.444773 | 3.1:+66318203 | None:intergenic |
TCTTGTTCCATACGTGGGCC+TGG | 0.449501 | 3.1:+66318181 | None:intergenic |
TTCAGGTTGCAATTCCGGTT+CGG | 0.449691 | 3.1:+66318920 | None:intergenic |
GAATCACATACATGTTTGTT+CGG | 0.450921 | 3.1:-66318996 | MS.gene70439:CDS |
CACGTATGGAACAAGAGGCC+TGG | 0.458410 | 3.1:-66318174 | MS.gene70439:CDS |
ACCCGAACTGAAGTCGGAAC+CGG | 0.459886 | 3.1:-66318898 | MS.gene70439:CDS |
CGCACACACTTAAACACAAA+AGG | 0.462554 | 3.1:+66318729 | None:intergenic |
TCCCCTCTGCAAGCTTGCGT+TGG | 0.466151 | 3.1:-66318439 | MS.gene70439:CDS |
AACAGAGACAGAAATATGAA+TGG | 0.466188 | 3.1:-66318815 | MS.gene70439:CDS |
TTCAGTTCCGGTGCTAACTC+CGG | 0.468654 | 3.1:+66318849 | None:intergenic |
TGGGCCTGGAAAATTATAAC+AGG | 0.482469 | 3.1:+66318195 | None:intergenic |
ACGTATGGAACAAGAGGCCT+GGG | 0.488378 | 3.1:-66318173 | MS.gene70439:CDS |
ACCGGAACTGAAGTTGGAAC+CGG | 0.489325 | 3.1:-66318868 | MS.gene70439:CDS |
GACACCACCTCAGGTGGCCC+AGG | 0.497237 | 3.1:+66318156 | None:intergenic |
ATATATACCACCAGGTCTCC+AGG | 0.503658 | 3.1:+66318269 | None:intergenic |
TGGAGGAGTAATAGCATCAA+AGG | 0.514021 | 3.1:+66318530 | None:intergenic |
TCATCGCAGCAATCCGTGGC+AGG | 0.518220 | 3.1:+66318963 | None:intergenic |
AGAAAAGCAGAAATATGTTA+CGG | 0.518698 | 3.1:-66318507 | MS.gene70439:CDS |
ATTGCCACCGGAACTGAAGT+TGG | 0.518984 | 3.1:-66318874 | MS.gene70439:CDS |
CAGGCCTCTTGTTCCATACG+TGG | 0.522394 | 3.1:+66318175 | None:intergenic |
GAGTTTAAGGCGAAGATCAT+CGG | 0.527340 | 3.1:+66318464 | None:intergenic |
ACAGAGACAGAAATATGAAT+GGG | 0.527605 | 3.1:-66318814 | MS.gene70439:CDS |
GAGGCCTGGGCCACCTGAGG+TGG | 0.535128 | 3.1:-66318160 | MS.gene70439:CDS |
CTCCAACGCAAGCTTGCAGA+GGG | 0.537666 | 3.1:+66318437 | None:intergenic |
ATGGCACACGACACCACCTC+AGG | 0.542265 | 3.1:+66318147 | None:intergenic |
CTGACATTGTGAAGACAACC+TGG | 0.546641 | 3.1:-66318287 | MS.gene70439:CDS |
GAAGTGCCTGAAATCCGAAC+CGG | 0.551355 | 3.1:-66318934 | MS.gene70439:CDS |
CGGCGTCATCCGACCTGCCA+CGG | 0.552704 | 3.1:-66318976 | MS.gene70439:CDS |
AGATCATCGGTTATGGAAAG+TGG | 0.556078 | 3.1:+66318477 | None:intergenic |
AGGCCTCTTGTTCCATACGT+GGG | 0.562166 | 3.1:+66318176 | None:intergenic |
ACGGATTGCTGCGATGAAAG+AGG | 0.563989 | 3.1:-66318957 | MS.gene70439:CDS |
CGGATTGCTGCGATGAAAGA+GGG | 0.569780 | 3.1:-66318956 | MS.gene70439:CDS |
ATTATAACAGGTCTGTTGGA+AGG | 0.577695 | 3.1:+66318207 | None:intergenic |
ACCTGAACCCGAACTGAAGT+CGG | 0.580010 | 3.1:-66318904 | MS.gene70439:CDS |
CAAGAGGCCTGGGCCACCTG+AGG | 0.581372 | 3.1:-66318163 | MS.gene70439:CDS |
CGCAGCAATCCGTGGCAGGT+CGG | 0.581919 | 3.1:+66318967 | None:intergenic |
GGAGGAGTAATAGCATCAAA+GGG | 0.583487 | 3.1:+66318531 | None:intergenic |
GTCGGAACCGGAATTGCCAC+CGG | 0.601982 | 3.1:-66318886 | MS.gene70439:CDS |
GTGAAGACAACCTGGAGACC+TGG | 0.604519 | 3.1:-66318279 | MS.gene70439:CDS |
TCTTTCATCGCAGCAATCCG+TGG | 0.614163 | 3.1:+66318959 | None:intergenic |
GTTGGAACCGGAGTTAGCAC+CGG | 0.614360 | 3.1:-66318856 | MS.gene70439:CDS |
GGTTCCAACTTCAGTTCCGG+TGG | 0.621297 | 3.1:+66318870 | None:intergenic |
AGGCCCACGTATGGAACAAG+AGG | 0.623282 | 3.1:-66318179 | MS.gene70439:CDS |
GCACACGACACCACCTCAGG+TGG | 0.634060 | 3.1:+66318150 | None:intergenic |
GCTCCAACGCAAGCTTGCAG+AGG | 0.640098 | 3.1:+66318436 | None:intergenic |
GTGATGTAATATATACCACC+AGG | 0.685832 | 3.1:+66318261 | None:intergenic |
TCCAACGCAAGCTTGCAGAG+GGG | 0.750745 | 3.1:+66318438 | None:intergenic |
AAGACAACCTGGAGACCTGG+TGG | 0.761347 | 3.1:-66318276 | MS.gene70439:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGTATGCTTCTTAATTATTA+GGG | - | chr3.1:66318815-66318834 | MS.gene70439:CDS | 20.0% |
!! | TAGTATGCTTCTTAATTATT+AGG | - | chr3.1:66318814-66318833 | MS.gene70439:CDS | 20.0% |
! | AGAAAAGCAGAAATATGTTA+CGG | - | chr3.1:66318635-66318654 | MS.gene70439:intron | 25.0% |
!!! | TAACATATTTCTGCTTTTCT+TGG | + | chr3.1:66318635-66318654 | None:intergenic | 25.0% |
AACAGAGACAGAAATATGAA+TGG | - | chr3.1:66318327-66318346 | MS.gene70439:intron | 30.0% | |
ACAGAGACAGAAATATGAAT+GGG | - | chr3.1:66318328-66318347 | MS.gene70439:intron | 30.0% | |
GAAAATTATAACAGGTCTGT+TGG | + | chr3.1:66318942-66318961 | None:intergenic | 30.0% | |
GAATCACATACATGTTTGTT+CGG | - | chr3.1:66318146-66318165 | MS.gene70439:CDS | 30.0% | |
GCGATTTACGTATAAGAATA+AGG | - | chr3.1:66318433-66318452 | MS.gene70439:CDS | 30.0% | |
GGCTCAGATTAAAAAAGATA+AGG | - | chr3.1:66318454-66318473 | MS.gene70439:CDS | 30.0% | |
! | TCATATTTCTGTCTCTGTTT+CGG | + | chr3.1:66318326-66318345 | None:intergenic | 30.0% |
!!! | TTCTTGTTTTTGTGCTTGAA+AGG | + | chr3.1:66318906-66318925 | None:intergenic | 30.0% |
ATTATAACAGGTCTGTTGGA+AGG | + | chr3.1:66318938-66318957 | None:intergenic | 35.0% | |
GCAATACAATGCTAAGAATC+AGG | - | chr3.1:66318727-66318746 | MS.gene70439:CDS | 35.0% | |
GTGATGTAATATATACCACC+AGG | + | chr3.1:66318884-66318903 | None:intergenic | 35.0% | |
TCAAGCACAAAAACAAGAAC+AGG | - | chr3.1:66318907-66318926 | MS.gene70439:CDS | 35.0% | |
! | CAGACCTGTTATAATTTTCC+AGG | - | chr3.1:66318943-66318962 | MS.gene70439:CDS | 35.0% |
!! | CATATTTCTGCTTTTCTTGG+AGG | + | chr3.1:66318632-66318651 | None:intergenic | 35.0% |
CGCACACACTTAAACACAAA+AGG | + | chr3.1:66318416-66318435 | None:intergenic | 40.0% | |
GAGATAGATGCGTTACAGAT+AGG | + | chr3.1:66318523-66318542 | None:intergenic | 40.0% | |
GGAGGAGTAATAGCATCAAA+GGG | + | chr3.1:66318614-66318633 | None:intergenic | 40.0% | |
TGGAGGAGTAATAGCATCAA+AGG | + | chr3.1:66318615-66318634 | None:intergenic | 40.0% | |
TGGGCCTGGAAAATTATAAC+AGG | + | chr3.1:66318950-66318969 | None:intergenic | 40.0% | |
! | AGATCATCGGTTATGGAAAG+TGG | + | chr3.1:66318668-66318687 | None:intergenic | 40.0% |
! | GAGTTTAAGGCGAAGATCAT+CGG | + | chr3.1:66318681-66318700 | None:intergenic | 40.0% |
ATATATACCACCAGGTCTCC+AGG | + | chr3.1:66318876-66318895 | None:intergenic | 45.0% | |
CTGACATTGTGAAGACAACC+TGG | - | chr3.1:66318855-66318874 | MS.gene70439:CDS | 45.0% | |
TCGCCAGAGCTAAGCATAAA+AGG | - | chr3.1:66318486-66318505 | MS.gene70439:CDS | 45.0% | |
! | AAGGCGAAGATCATCGGTTA+TGG | + | chr3.1:66318675-66318694 | None:intergenic | 45.0% |
! | ACGCCTTTTATGCTTAGCTC+TGG | + | chr3.1:66318492-66318511 | None:intergenic | 45.0% |
! | TAATTTTCCAGGCCCACGTA+TGG | - | chr3.1:66318954-66318973 | MS.gene70439:CDS | 45.0% |
!! | TTCAGGTTGCAATTCCGGTT+CGG | + | chr3.1:66318225-66318244 | None:intergenic | 45.0% |
!!! | TTAATTTAATTTCTTAATTT+TGG | - | chr3.1:66318573-66318592 | MS.gene70439:intron | 5.0% |
ACCGGAACTGAAGTTGGAAC+CGG | - | chr3.1:66318274-66318293 | MS.gene70439:CDS | 50.0% | |
ACCTGAACCCGAACTGAAGT+CGG | - | chr3.1:66318238-66318257 | MS.gene70439:CDS | 50.0% | |
ACGTATGGAACAAGAGGCCT+GGG | - | chr3.1:66318969-66318988 | MS.gene70439:CDS | 50.0% | |
AGGCCTCTTGTTCCATACGT+GGG | + | chr3.1:66318969-66318988 | None:intergenic | 50.0% | |
ATTGCCACCGGAACTGAAGT+TGG | - | chr3.1:66318268-66318287 | MS.gene70439:CDS | 50.0% | |
CGGATTGCTGCGATGAAAGA+GGG | - | chr3.1:66318186-66318205 | MS.gene70439:CDS | 50.0% | |
TCCGGTTCCAACTTCAGTTC+CGG | + | chr3.1:66318278-66318297 | None:intergenic | 50.0% | |
TCTTTCATCGCAGCAATCCG+TGG | + | chr3.1:66318186-66318205 | None:intergenic | 50.0% | |
TGCAGAGGGGAGTGAGTTTA+AGG | + | chr3.1:66318694-66318713 | None:intergenic | 50.0% | |
TTCAGTTCCGGTGGCAATTC+CGG | + | chr3.1:66318266-66318285 | None:intergenic | 50.0% | |
TTCCGGTTCCGACTTCAGTT+CGG | + | chr3.1:66318249-66318268 | None:intergenic | 50.0% | |
TTCGGTTGCGACTTCAGTTC+CGG | + | chr3.1:66318308-66318327 | None:intergenic | 50.0% | |
! | ACGGATTGCTGCGATGAAAG+AGG | - | chr3.1:66318185-66318204 | MS.gene70439:CDS | 50.0% |
! | GAAGTGCCTGAAATCCGAAC+CGG | - | chr3.1:66318208-66318227 | MS.gene70439:CDS | 50.0% |
! | TTCAGTTCCGGTGCTAACTC+CGG | + | chr3.1:66318296-66318315 | None:intergenic | 50.0% |
!! | GCAATTCCGGTTCGGATTTC+AGG | + | chr3.1:66318217-66318236 | None:intergenic | 50.0% |
!! | TCGGGTTCAGGTTGCAATTC+CGG | + | chr3.1:66318230-66318249 | None:intergenic | 50.0% |
AAGACAACCTGGAGACCTGG+TGG | - | chr3.1:66318866-66318885 | MS.gene70439:CDS | 55.0% | |
ACCCGAACTGAAGTCGGAAC+CGG | - | chr3.1:66318244-66318263 | MS.gene70439:CDS | 55.0% | |
AGGCCCACGTATGGAACAAG+AGG | - | chr3.1:66318963-66318982 | MS.gene70439:CDS | 55.0% | |
CACGTATGGAACAAGAGGCC+TGG | - | chr3.1:66318968-66318987 | MS.gene70439:CDS | 55.0% | |
CAGGCCTCTTGTTCCATACG+TGG | + | chr3.1:66318970-66318989 | None:intergenic | 55.0% | |
CTCCAACGCAAGCTTGCAGA+GGG | + | chr3.1:66318708-66318727 | None:intergenic | 55.0% | |
GGTTCCAACTTCAGTTCCGG+TGG | + | chr3.1:66318275-66318294 | None:intergenic | 55.0% | |
GTGAAGACAACCTGGAGACC+TGG | - | chr3.1:66318863-66318882 | MS.gene70439:CDS | 55.0% | |
GTTGGAACCGGAGTTAGCAC+CGG | - | chr3.1:66318286-66318305 | MS.gene70439:CDS | 55.0% | |
TCCAACGCAAGCTTGCAGAG+GGG | + | chr3.1:66318707-66318726 | None:intergenic | 55.0% | |
TCCGGTTCCGACTTCAGTTC+GGG | + | chr3.1:66318248-66318267 | None:intergenic | 55.0% | |
TCTTGTTCCATACGTGGGCC+TGG | + | chr3.1:66318964-66318983 | None:intergenic | 55.0% | |
! | TCCGACTTCAGTTCGGGTTC+AGG | + | chr3.1:66318242-66318261 | None:intergenic | 55.0% |
ATGGCACACGACACCACCTC+AGG | + | chr3.1:66318998-66319017 | None:intergenic | 60.0% | |
GCTCCAACGCAAGCTTGCAG+AGG | + | chr3.1:66318709-66318728 | None:intergenic | 60.0% | |
GTCGGAACCGGAATTGCCAC+CGG | - | chr3.1:66318256-66318275 | MS.gene70439:CDS | 60.0% | |
TCATCGCAGCAATCCGTGGC+AGG | + | chr3.1:66318182-66318201 | None:intergenic | 60.0% | |
TCCCCTCTGCAAGCTTGCGT+TGG | - | chr3.1:66318703-66318722 | MS.gene70439:CDS | 60.0% | |
CGCAGCAATCCGTGGCAGGT+CGG | + | chr3.1:66318178-66318197 | None:intergenic | 65.0% | |
GCACACGACACCACCTCAGG+TGG | + | chr3.1:66318995-66319014 | None:intergenic | 65.0% | |
CAAGAGGCCTGGGCCACCTG+AGG | - | chr3.1:66318979-66318998 | MS.gene70439:CDS | 70.0% | |
CGGCGTCATCCGACCTGCCA+CGG | - | chr3.1:66318166-66318185 | MS.gene70439:CDS | 70.0% | |
GACACCACCTCAGGTGGCCC+AGG | + | chr3.1:66318989-66319008 | None:intergenic | 70.0% | |
GAGGCCTGGGCCACCTGAGG+TGG | - | chr3.1:66318982-66319001 | MS.gene70439:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 66318137 | 66319027 | 66318137 | ID=MS.gene70439 |
chr3.1 | mRNA | 66318137 | 66319027 | 66318137 | ID=MS.gene70439.t1;Parent=MS.gene70439 |
chr3.1 | exon | 66318638 | 66319027 | 66318638 | ID=MS.gene70439.t1.exon1;Parent=MS.gene70439.t1 |
chr3.1 | CDS | 66318638 | 66319027 | 66318638 | ID=cds.MS.gene70439.t1;Parent=MS.gene70439.t1 |
chr3.1 | exon | 66318416 | 66318553 | 66318416 | ID=MS.gene70439.t1.exon2;Parent=MS.gene70439.t1 |
chr3.1 | CDS | 66318416 | 66318553 | 66318416 | ID=cds.MS.gene70439.t1;Parent=MS.gene70439.t1 |
chr3.1 | exon | 66318137 | 66318328 | 66318137 | ID=MS.gene70439.t1.exon3;Parent=MS.gene70439.t1 |
chr3.1 | CDS | 66318137 | 66318328 | 66318137 | ID=cds.MS.gene70439.t1;Parent=MS.gene70439.t1 |
Gene Sequence |
Protein sequence |