Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71529.t1 | AES71816.1 | 69.3 | 202 | 20 | 4 | 1 | 169 | 1 | 193 | 3.00E-64 | 255 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71529.t1 | G7J9H7 | 69.3 | 202 | 20 | 4 | 1 | 169 | 1 | 193 | 2.2e-64 | 255.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene77472 | MS.gene71529 | PPI |
MS.gene71529 | MS.gene70430 | PPI |
MS.gene71529 | MS.gene25704 | PPI |
MS.gene71529 | MS.gene77468 | PPI |
MS.gene71529 | MS.gene71531 | PPI |
MS.gene71529 | MS.gene044323 | PPI |
MS.gene71529 | MS.gene71282 | PPI |
MS.gene71529 | MS.gene71528 | PPI |
MS.gene71529 | MS.gene71284 | PPI |
MS.gene71529 | MS.gene044376 | PPI |
MS.gene71529 | MS.gene045214 | PPI |
MS.gene71529 | MS.gene77466 | PPI |
MS.gene71529 | MS.gene044361 | PPI |
MS.gene70443 | MS.gene71529 | PPI |
MS.gene044363 | MS.gene71529 | PPI |
MS.gene71529 | MS.gene71524 | PPI |
MS.gene71529 | MS.gene70424 | PPI |
MS.gene71529 | MS.gene77464 | PPI |
MS.gene70418 | MS.gene71529 | PPI |
MS.gene71529 | MS.gene049263 | PPI |
MS.gene71529 | MS.gene044370 | PPI |
MS.gene71529 | MS.gene044326 | PPI |
MS.gene71529 | MS.gene79115 | PPI |
MS.gene71529 | MS.gene70427 | PPI |
MS.gene71529 | MS.gene70476 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71529.t1 | MTR_3g083080 | 68.966 | 203 | 21 | 4 | 1 | 170 | 1 | 194 | 2.96e-88 | 258 |
MS.gene71529.t1 | MTR_3g083030 | 44.954 | 218 | 57 | 5 | 1 | 161 | 1 | 212 | 9.50e-49 | 159 |
MS.gene71529.t1 | MTR_3g083050 | 47.692 | 195 | 62 | 4 | 1 | 161 | 1 | 189 | 1.45e-47 | 155 |
MS.gene71529.t1 | MTR_3g082340 | 30.144 | 209 | 95 | 8 | 1 | 161 | 1 | 206 | 1.69e-17 | 77.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 44 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCGGTTGCAATCCCGTTAC+AGG | 0.190009 | 3.4:-78255762 | None:intergenic |
CCGGAAAACTGTGATGAAAA+AGG | 0.252165 | 3.4:+78255732 | MS.gene71529:CDS |
AATCTGAGCCTTATTCTTAT+AGG | 0.253945 | 3.4:-78255898 | None:intergenic |
CGCCCACACATAAACATAAA+AGG | 0.266595 | 3.4:-78255870 | None:intergenic |
TCATATTTCTTTCTCCGTTT+CGG | 0.317369 | 3.4:-78255780 | None:intergenic |
GCGATTTACCTATAAGAATA+AGG | 0.398069 | 3.4:+78255890 | MS.gene71529:CDS |
TCTTGTTTCATACTTGTGCT+TGG | 0.413432 | 3.4:-78256226 | None:intergenic |
ATAAATGCTAACAGGTCATT+AGG | 0.415829 | 3.4:+78256372 | MS.gene71529:intron |
TATGGATTTACTACTCAAAC+CGG | 0.438570 | 3.4:-78256409 | None:intergenic |
TTAGGCCTGTGCAAAATAAC+CGG | 0.445160 | 3.4:+78256390 | MS.gene71529:CDS |
GAAAATTATAGCAGAGATGT+TGG | 0.447031 | 3.4:-78256204 | None:intergenic |
CGGCGTCACCCAACCTTCTC+CGG | 0.453638 | 3.4:+78255713 | MS.gene71529:CDS |
AACGGAGAAAGAAATATGAA+TGG | 0.461826 | 3.4:+78255784 | MS.gene71529:CDS |
AAAGGGAATCAACCTGTAAC+GGG | 0.471848 | 3.4:+78255750 | MS.gene71529:CDS |
TGCAGAGGGGAGTGAGTTCA+AGG | 0.477142 | 3.4:-78255965 | None:intergenic |
CACGACGGCGGCAAAATATG+TGG | 0.492216 | 3.4:+78256881 | MS.gene71529:CDS |
CGGAGAAGGTTGGGTGACGC+CGG | 0.498648 | 3.4:-78255712 | None:intergenic |
TTCTTGTTCGTGTGCTTGAA+AGG | 0.503496 | 3.4:-78256162 | None:intergenic |
AATGTCGATGGAATTCAATA+CGG | 0.514369 | 3.4:+78255683 | None:intergenic |
GGAGAAGGTTGGGTGACGCC+GGG | 0.516300 | 3.4:-78255711 | None:intergenic |
TAACGGGATTGCAACCGAAA+CGG | 0.516954 | 3.4:+78255766 | MS.gene71529:CDS |
ACGGAGAAAGAAATATGAAT+GGG | 0.520163 | 3.4:+78255785 | MS.gene71529:CDS |
CAAGTACAATGCTGAGAACC+AGG | 0.527031 | 3.4:+78256001 | MS.gene71529:CDS |
ATACATACAACCAGGTCTCC+AGG | 0.532645 | 3.4:-78256132 | None:intergenic |
AAGATCATCGGTTAAGTCGA+TGG | 0.533943 | 3.4:-78255940 | None:intergenic |
GAATTCAATACGGTTTCGCC+CGG | 0.538537 | 3.4:+78255693 | MS.gene71529:CDS |
TTGACATTGTGAAGACAACC+TGG | 0.541774 | 3.4:+78256114 | MS.gene71529:CDS |
TTTGCCGCCGTCGTGCAAAG+AGG | 0.560812 | 3.4:-78256873 | None:intergenic |
AAAAGGGAATCAACCTGTAA+CGG | 0.561384 | 3.4:+78255749 | MS.gene71529:CDS |
GTCTAACACAAACTTGCAGA+GGG | 0.571934 | 3.4:-78255979 | None:intergenic |
ATTATAGCAGAGATGTTGGA+AGG | 0.576865 | 3.4:-78256200 | None:intergenic |
AGATCATCGGTTAAGTCGAT+GGG | 0.584455 | 3.4:-78255939 | None:intergenic |
GAGTTCAAGGCAAAGATCAT+CGG | 0.594092 | 3.4:-78255952 | None:intergenic |
GTGAAGACAACCTGGAGACC+TGG | 0.604519 | 3.4:+78256122 | MS.gene71529:CDS |
TCCGTGTTACAGAATGTCGA+TGG | 0.606334 | 3.4:+78255671 | None:intergenic |
GACGACAGAAGCTTTGCGCA+CGG | 0.608634 | 3.4:+78256839 | MS.gene71529:CDS |
ATAACCTCTTTGCACGACGG+CGG | 0.614814 | 3.4:+78256869 | MS.gene71529:CDS |
GTTGACAGAAACTTTGCTCA+CGG | 0.614889 | 3.4:+78256815 | MS.gene71529:CDS |
ACGGCGGCAAAATATGTGGA+TGG | 0.637748 | 3.4:+78256885 | MS.gene71529:CDS |
TGTCTAACACAAACTTGCAG+AGG | 0.637970 | 3.4:-78255980 | None:intergenic |
GATATAACCTCTTTGCACGA+CGG | 0.649315 | 3.4:+78256866 | MS.gene71529:CDS |
GTAATGTAATACATACAACC+AGG | 0.734534 | 3.4:-78256140 | None:intergenic |
GACAGAAGCTTTGCGCACGG+CGG | 0.747493 | 3.4:+78256842 | MS.gene71529:CDS |
TCTAACACAAACTTGCAGAG+GGG | 0.776478 | 3.4:-78255978 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATATTTGGTTTTAAAATTTA+TGG | - | chr3.4:78256462-78256481 | None:intergenic | 10.0% |
!!! | AAAAATTGGTAATAGTTTTT+TGG | - | chr3.4:78256553-78256572 | None:intergenic | 15.0% |
!!! | AAAATTGGTAATAGTTTTTT+GGG | - | chr3.4:78256552-78256571 | None:intergenic | 15.0% |
!!! | AATTTATGGTTATTTTAGAA+TGG | - | chr3.4:78256448-78256467 | None:intergenic | 15.0% |
! | ATCAACCAAACCATTTAAAA+TGG | + | chr3.4:78256480-78256499 | MS.gene71529:intron | 25.0% |
!! | ACTAATTTTTCTCCTGATTT+AGG | + | chr3.4:78256073-78256092 | MS.gene71529:intron | 25.0% |
!! | CATCATGTTTAATCTTTTCT+TGG | + | chr3.4:78256343-78256362 | MS.gene71529:intron | 25.0% |
!! | CTAATTTTTCTCCTGATTTA+GGG | + | chr3.4:78256074-78256093 | MS.gene71529:intron | 25.0% |
!! | TATAACCGATCCATTTTAAA+TGG | - | chr3.4:78256493-78256512 | None:intergenic | 25.0% |
!!! | TAAATGGTTTGGTTGATATT+TGG | - | chr3.4:78256477-78256496 | None:intergenic | 25.0% |
!!! | TGGTTATTTTAGAATGGTTA+CGG | - | chr3.4:78256442-78256461 | None:intergenic | 25.0% |
!!! | TTTTGGGCTTTTTCTTTTTA+GGG | - | chr3.4:78256536-78256555 | None:intergenic | 25.0% |
!!! | TTTTTCTTTTTAGGGATAAC+CGG | - | chr3.4:78256528-78256547 | None:intergenic | 25.0% |
!!! | TTTTTGGGCTTTTTCTTTTT+AGG | - | chr3.4:78256537-78256556 | None:intergenic | 25.0% |
AACGGAGAAAGAAATATGAA+TGG | + | chr3.4:78255784-78255803 | MS.gene71529:CDS | 30.0% | |
ACGGAGAAAGAAATATGAAT+GGG | + | chr3.4:78255785-78255804 | MS.gene71529:CDS | 30.0% | |
ATAAATGCTAACAGGTCATT+AGG | + | chr3.4:78256372-78256391 | MS.gene71529:intron | 30.0% | |
GAAAATTATAGCAGAGATGT+TGG | - | chr3.4:78256207-78256226 | None:intergenic | 30.0% | |
GCGATTTACCTATAAGAATA+AGG | + | chr3.4:78255890-78255909 | MS.gene71529:CDS | 30.0% | |
GGAGATTTATAAATGCTAAC+AGG | + | chr3.4:78256364-78256383 | MS.gene71529:intron | 30.0% | |
GGTTATAAACCATTGTTAAC+CGG | + | chr3.4:78256506-78256525 | MS.gene71529:intron | 30.0% | |
GTAATGTAATACATACAACC+AGG | - | chr3.4:78256143-78256162 | None:intergenic | 30.0% | |
TATGGATTTACTACTCAAAC+CGG | - | chr3.4:78256412-78256431 | None:intergenic | 30.0% | |
TCATATTTCTTTCTCCGTTT+CGG | - | chr3.4:78255783-78255802 | None:intergenic | 30.0% | |
! | AAGCCTTTTATGTTTATGTG+TGG | + | chr3.4:78255867-78255886 | MS.gene71529:CDS | 30.0% |
! | AGCCTTTTATGTTTATGTGT+GGG | + | chr3.4:78255868-78255887 | MS.gene71529:CDS | 30.0% |
! | CCAAACCATTTAAAATGGAT+CGG | + | chr3.4:78256485-78256504 | MS.gene71529:intron | 30.0% |
! | TGAGTTGAAAGCAGAAAAAT+TGG | - | chr3.4:78256567-78256586 | None:intergenic | 30.0% |
!! | AATCTGAGCCTTATTCTTAT+AGG | - | chr3.4:78255901-78255920 | None:intergenic | 30.0% |
!! | TTCTTGTAATTTGTTGAACC+TGG | - | chr3.4:78256022-78256041 | None:intergenic | 30.0% |
!!! | GGTTATTTTAGAATGGTTAC+GGG | - | chr3.4:78256441-78256460 | None:intergenic | 30.0% |
AAAAGGGAATCAACCTGTAA+CGG | + | chr3.4:78255749-78255768 | MS.gene71529:CDS | 35.0% | |
AAGCACAAGTATGAAACAAG+AGG | + | chr3.4:78256228-78256247 | MS.gene71529:intron | 35.0% | |
ATTATAGCAGAGATGTTGGA+AGG | - | chr3.4:78256203-78256222 | None:intergenic | 35.0% | |
CAAAATTTGCACCCTAAATC+AGG | - | chr3.4:78256088-78256107 | None:intergenic | 35.0% | |
CGGAAAACTGTGATGAAAAA+GGG | + | chr3.4:78255733-78255752 | MS.gene71529:CDS | 35.0% | |
! | CCGATCCATTTTAAATGGTT+TGG | - | chr3.4:78256488-78256507 | None:intergenic | 35.0% |
! | TCTTGTTTCATACTTGTGCT+TGG | - | chr3.4:78256229-78256248 | None:intergenic | 35.0% |
!! | CCTTTTTCATCACAGTTTTC+CGG | - | chr3.4:78255735-78255754 | None:intergenic | 35.0% |
!!! | TTTTAGAATGGTTACGGGTA+TGG | - | chr3.4:78256436-78256455 | None:intergenic | 35.0% |
AAAGGGAATCAACCTGTAAC+GGG | + | chr3.4:78255750-78255769 | MS.gene71529:CDS | 40.0% | |
AAGTATGAAACAAGAGGCCT+GGG | + | chr3.4:78256234-78256253 | MS.gene71529:intron | 40.0% | |
AATGGTTACGGGTATGGTTA+TGG | - | chr3.4:78256430-78256449 | None:intergenic | 40.0% | |
ACCTAACACGTACATCATCA+TGG | + | chr3.4:78256290-78256309 | MS.gene71529:intron | 40.0% | |
CCGGAAAACTGTGATGAAAA+AGG | + | chr3.4:78255732-78255751 | MS.gene71529:CDS | 40.0% | |
CGCCCACACATAAACATAAA+AGG | - | chr3.4:78255873-78255892 | None:intergenic | 40.0% | |
GAGTTCAAGGCAAAGATCAT+CGG | - | chr3.4:78255955-78255974 | None:intergenic | 40.0% | |
GATATAACCTCTTTGCACGA+CGG | + | chr3.4:78256866-78256885 | MS.gene71529:CDS | 40.0% | |
GTCTAACACAAACTTGCAGA+GGG | - | chr3.4:78255982-78256001 | None:intergenic | 40.0% | |
GTTGACAGAAACTTTGCTCA+CGG | + | chr3.4:78256815-78256834 | MS.gene71529:CDS | 40.0% | |
TAGGGATAACCGGTTAACAA+TGG | - | chr3.4:78256518-78256537 | None:intergenic | 40.0% | |
TCTAACACAAACTTGCAGAG+GGG | - | chr3.4:78255981-78256000 | None:intergenic | 40.0% | |
TGTCTAACACAAACTTGCAG+AGG | - | chr3.4:78255983-78256002 | None:intergenic | 40.0% | |
TTAGGCCTGTGCAAAATAAC+CGG | + | chr3.4:78256390-78256409 | MS.gene71529:CDS | 40.0% | |
TTCTTGTTCGTGTGCTTGAA+AGG | - | chr3.4:78256165-78256184 | None:intergenic | 40.0% | |
TTGACATTGTGAAGACAACC+TGG | + | chr3.4:78256114-78256133 | MS.gene71529:CDS | 40.0% | |
! | AAGATCATCGGTTAAGTCGA+TGG | - | chr3.4:78255943-78255962 | None:intergenic | 40.0% |
! | ACCATGATGATGTACGTGTT+AGG | - | chr3.4:78256294-78256313 | None:intergenic | 40.0% |
! | AGATCATCGGTTAAGTCGAT+GGG | - | chr3.4:78255942-78255961 | None:intergenic | 40.0% |
! | TGATGATGTACGTGTTAGGT+AGG | - | chr3.4:78256290-78256309 | None:intergenic | 40.0% |
!! | TCAAACCGGTTATTTTGCAC+AGG | - | chr3.4:78256398-78256417 | None:intergenic | 40.0% |
ATACATACAACCAGGTCTCC+AGG | - | chr3.4:78256135-78256154 | None:intergenic | 45.0% | |
CAAGTACAATGCTGAGAACC+AGG | + | chr3.4:78256001-78256020 | MS.gene71529:CDS | 45.0% | |
CAAGTATGAAACAAGAGGCC+TGG | + | chr3.4:78256233-78256252 | MS.gene71529:intron | 45.0% | |
GAATTCAATACGGTTTCGCC+CGG | + | chr3.4:78255693-78255712 | MS.gene71529:CDS | 45.0% | |
TAACGGGATTGCAACCGAAA+CGG | + | chr3.4:78255766-78255785 | MS.gene71529:CDS | 45.0% | |
TACGTGTTAGGTAGGCTTCA+TGG | - | chr3.4:78256282-78256301 | None:intergenic | 45.0% | |
! | ACAGTTTTCCGGAGAAGGTT+GGG | - | chr3.4:78255724-78255743 | None:intergenic | 45.0% |
! | TCATCACAGTTTTCCGGAGA+AGG | - | chr3.4:78255729-78255748 | None:intergenic | 45.0% |
ACGGCGGCAAAATATGTGGA+TGG | + | chr3.4:78256885-78256904 | MS.gene71529:CDS | 50.0% | |
ATAACCTCTTTGCACGACGG+CGG | + | chr3.4:78256869-78256888 | MS.gene71529:CDS | 50.0% | |
ATGGCACATGACTTGACCTC+AGG | - | chr3.4:78256263-78256282 | None:intergenic | 50.0% | |
GACGGAGATGAAAACGCAAG+AGG | + | chr3.4:78256616-78256635 | MS.gene71529:intron | 50.0% | |
GGAGATGAAAACGCAAGAGG+AGG | + | chr3.4:78256619-78256638 | MS.gene71529:intron | 50.0% | |
TTCAACTCACTCCGATGACG+TGG | + | chr3.4:78256578-78256597 | MS.gene71529:intron | 50.0% | |
TTCGGTTGCAATCCCGTTAC+AGG | - | chr3.4:78255765-78255784 | None:intergenic | 50.0% | |
! | CACAGTTTTCCGGAGAAGGT+TGG | - | chr3.4:78255725-78255744 | None:intergenic | 50.0% |
CACGACGGCGGCAAAATATG+TGG | + | chr3.4:78256881-78256900 | MS.gene71529:CDS | 55.0% | |
GACGACAGAAGCTTTGCGCA+CGG | + | chr3.4:78256839-78256858 | MS.gene71529:CDS | 55.0% | |
GCACATGACTTGACCTCAGG+TGG | - | chr3.4:78256260-78256279 | None:intergenic | 55.0% | |
GTGAAGACAACCTGGAGACC+TGG | + | chr3.4:78256122-78256141 | MS.gene71529:CDS | 55.0% | |
TCACAGAGATGACTCCGACG+AGG | + | chr3.4:78256723-78256742 | MS.gene71529:intron | 55.0% | |
TGCAGAGGGGAGTGAGTTCA+AGG | - | chr3.4:78255968-78255987 | None:intergenic | 55.0% | |
CTCACTCCGATGACGTGGCA+CGG | + | chr3.4:78256583-78256602 | MS.gene71529:intron | 60.0% | |
GACAGAAGCTTTGCGCACGG+CGG | + | chr3.4:78256842-78256861 | MS.gene71529:CDS | 60.0% | |
TAACCGCCGTGCCACGTCAT+CGG | - | chr3.4:78256592-78256611 | None:intergenic | 60.0% | |
TGGCACGGCGGTTACATGGA+CGG | + | chr3.4:78256598-78256617 | MS.gene71529:intron | 60.0% | |
TTTGCCGCCGTCGTGCAAAG+AGG | - | chr3.4:78256876-78256895 | None:intergenic | 60.0% | |
ACTCCGATGACGTGGCACGG+CGG | + | chr3.4:78256586-78256605 | MS.gene71529:intron | 65.0% | |
CGGAGAAGGTTGGGTGACGC+CGG | - | chr3.4:78255715-78255734 | None:intergenic | 65.0% | |
CGGCGTCACCCAACCTTCTC+CGG | + | chr3.4:78255713-78255732 | MS.gene71529:CDS | 65.0% | |
CTCCGACGAGGTGTGCACGA+CGG | + | chr3.4:78256735-78256754 | MS.gene71529:intron | 65.0% | |
GACGTGGCACGGCGGTTACA+TGG | + | chr3.4:78256594-78256613 | MS.gene71529:intron | 65.0% | |
GACTTGACCTCAGGTGGCCC+AGG | - | chr3.4:78256254-78256273 | None:intergenic | 65.0% | |
GGAGAAGGTTGGGTGACGCC+GGG | - | chr3.4:78255714-78255733 | None:intergenic | 65.0% | |
CAAGAGGCCTGGGCCACCTG+AGG | + | chr3.4:78256244-78256263 | MS.gene71529:intron | 70.0% | |
CGCCGTCGTGCACACCTCGT+CGG | - | chr3.4:78256740-78256759 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 78255684 | 78256913 | 78255684 | ID=MS.gene71529 |
chr3.4 | mRNA | 78255684 | 78256913 | 78255684 | ID=MS.gene71529.t1;Parent=MS.gene71529 |
chr3.4 | exon | 78255684 | 78256022 | 78255684 | ID=MS.gene71529.t1.exon1;Parent=MS.gene71529.t1 |
chr3.4 | CDS | 78255684 | 78256022 | 78255684 | ID=cds.MS.gene71529.t1;Parent=MS.gene71529.t1 |
chr3.4 | exon | 78256095 | 78256235 | 78256095 | ID=MS.gene71529.t1.exon2;Parent=MS.gene71529.t1 |
chr3.4 | CDS | 78256095 | 78256235 | 78256095 | ID=cds.MS.gene71529.t1;Parent=MS.gene71529.t1 |
chr3.4 | exon | 78256386 | 78256420 | 78256386 | ID=MS.gene71529.t1.exon3;Parent=MS.gene71529.t1 |
chr3.4 | CDS | 78256386 | 78256420 | 78256386 | ID=cds.MS.gene71529.t1;Parent=MS.gene71529.t1 |
chr3.4 | exon | 78256811 | 78256913 | 78256811 | ID=MS.gene71529.t1.exon4;Parent=MS.gene71529.t1 |
chr3.4 | CDS | 78256811 | 78256913 | 78256811 | ID=cds.MS.gene71529.t1;Parent=MS.gene71529.t1 |
Gene Sequence |
Protein sequence |