Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71935.t1 | XP_003608724.1 | 92.1 | 757 | 56 | 2 | 1 | 756 | 1 | 754 | 0.00E+00 | 1377.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71935.t1 | G7JIX8 | 92.1 | 757 | 56 | 2 | 1 | 756 | 1 | 754 | 0.0e+00 | 1377.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050105 | MS.gene71935 | 0.80307 | 4.15E-49 | -1.69E-46 |
| MS.gene050605 | MS.gene71935 | 0.812376 | 4.37E-51 | -1.69E-46 |
| MS.gene050680 | MS.gene71935 | 0.804456 | 2.14E-49 | -1.69E-46 |
| MS.gene051368 | MS.gene71935 | 0.830116 | 3.52E-55 | -1.69E-46 |
| MS.gene052333 | MS.gene71935 | 0.833312 | 5.73E-56 | -1.69E-46 |
| MS.gene052426 | MS.gene71935 | 0.81452 | 1.48E-51 | -1.69E-46 |
| MS.gene052674 | MS.gene71935 | 0.823389 | 1.42E-53 | -1.69E-46 |
| MS.gene052675 | MS.gene71935 | 0.827313 | 1.68E-54 | -1.69E-46 |
| MS.gene052677 | MS.gene71935 | 0.829245 | 5.74E-55 | -1.69E-46 |
| MS.gene052954 | MS.gene71935 | 0.808624 | 2.83E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene71935 | 0.835035 | 2.12E-56 | -1.69E-46 |
| MS.gene05415 | MS.gene71935 | 0.800494 | 1.40E-48 | -1.69E-46 |
| MS.gene054479 | MS.gene71935 | 0.829843 | 4.10E-55 | -1.69E-46 |
| MS.gene054559 | MS.gene71935 | 0.817309 | 3.53E-52 | -1.69E-46 |
| MS.gene054994 | MS.gene71935 | 0.804462 | 2.14E-49 | -1.69E-46 |
| MS.gene05510 | MS.gene71935 | 0.825929 | 3.58E-54 | -1.69E-46 |
| MS.gene055230 | MS.gene71935 | 0.809007 | 2.34E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene71935 | 0.861227 | 1.19E-63 | -1.69E-46 |
| MS.gene056480 | MS.gene71935 | 0.816853 | 4.46E-52 | -1.69E-46 |
| MS.gene057156 | MS.gene71935 | -0.840902 | 6.57E-58 | -1.69E-46 |
| MS.gene057208 | MS.gene71935 | 0.8167 | 4.83E-52 | -1.69E-46 |
| MS.gene058146 | MS.gene71935 | 0.806082 | 9.78E-50 | -1.69E-46 |
| MS.gene058595 | MS.gene71935 | 0.802261 | 6.10E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene71935 | 0.810129 | 1.34E-50 | -1.69E-46 |
| MS.gene059161 | MS.gene71935 | 0.820443 | 6.84E-53 | -1.69E-46 |
| MS.gene060322 | MS.gene71935 | 0.815326 | 9.79E-52 | -1.69E-46 |
| MS.gene060683 | MS.gene71935 | 0.801722 | 7.87E-49 | -1.69E-46 |
| MS.gene060685 | MS.gene71935 | 0.801226 | 9.95E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene71935 | 0.817878 | 2.62E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71935.t1 | MTR_4g101050 | 93.131 | 757 | 48 | 2 | 1 | 756 | 1 | 754 | 0.0 | 1409 |
| MS.gene71935.t1 | MTR_4g101070 | 83.377 | 758 | 122 | 2 | 1 | 756 | 3 | 758 | 0.0 | 1287 |
| MS.gene71935.t1 | MTR_4g101070 | 85.110 | 591 | 84 | 2 | 1 | 589 | 3 | 591 | 0.0 | 1025 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71935.t1 | AT4G17250 | 47.067 | 733 | 374 | 8 | 6 | 731 | 3 | 728 | 0.0 | 678 |
| MS.gene71935.t1 | AT5G47580 | 47.862 | 725 | 364 | 6 | 6 | 723 | 6 | 723 | 0.0 | 656 |
| MS.gene71935.t1 | AT4G17250 | 49.601 | 627 | 307 | 6 | 6 | 628 | 3 | 624 | 0.0 | 624 |
| MS.gene71935.t1 | AT4G17250 | 44.811 | 636 | 337 | 8 | 103 | 731 | 1 | 629 | 0.0 | 542 |
Find 123 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAAACACTTCTCAATATT+TGG | 0.113246 | 8.4:+23206515 | None:intergenic |
| AAAACTTGTTATTGAGTTAT+TGG | 0.151568 | 8.4:-23206678 | MS.gene71935:CDS |
| GCACAAATTCTACTAAATTA+AGG | 0.193234 | 8.4:-23205806 | MS.gene71935:CDS |
| AGACAAGCAGTTTATGTTCT+TGG | 0.232324 | 8.4:-23205984 | MS.gene71935:CDS |
| GAGATGAATTGATGAAATTT+TGG | 0.235831 | 8.4:-23207396 | MS.gene71935:CDS |
| ACTTCCTAAACCACCGATTA+TGG | 0.236006 | 8.4:+23207005 | None:intergenic |
| GGTTCTAGCGTTTCGAGTTT+AGG | 0.274993 | 8.4:-23206833 | MS.gene71935:CDS |
| TTTGACGGAAACAGCGATTA+TGG | 0.290610 | 8.4:+23207831 | None:intergenic |
| AATAACTCAATAACAAGTTT+TGG | 0.300017 | 8.4:+23206680 | None:intergenic |
| TCAGTTTCATGTACTGCTTC+TGG | 0.302903 | 8.4:-23207331 | MS.gene71935:CDS |
| TACCCTATGTGTTGGATCTT+GGG | 0.320599 | 8.4:-23206887 | MS.gene71935:CDS |
| GGTGATAATTGCTGATATAT+TGG | 0.324339 | 8.4:-23206087 | MS.gene71935:CDS |
| TTACCCTATGTGTTGGATCT+TGG | 0.340486 | 8.4:-23206888 | MS.gene71935:CDS |
| CTGGTGTTATCTATGAGTTT+TGG | 0.346173 | 8.4:-23207606 | MS.gene71935:CDS |
| ATTTGTATACAGTTTGTAAC+TGG | 0.348616 | 8.4:-23207625 | MS.gene71935:CDS |
| TTCGATCTTATTTGATGTCT+TGG | 0.352328 | 8.4:-23207264 | MS.gene71935:CDS |
| GGATCCATAATCGGTGGTTT+AGG | 0.355959 | 8.4:-23207009 | MS.gene71935:CDS |
| CACAAATTCTACTAAATTAA+GGG | 0.366106 | 8.4:-23205805 | MS.gene71935:CDS |
| GTGTAGAACCTCCATATAAT+TGG | 0.370757 | 8.4:-23206580 | MS.gene71935:CDS |
| TGAAACCATGATGAATGTTT+TGG | 0.374188 | 8.4:-23207683 | MS.gene71935:CDS |
| GCATCAAAACCCGCAAACTA+TGG | 0.374364 | 8.4:-23207894 | MS.gene71935:CDS |
| TCCAAATATTGAGAAGTGTT+TGG | 0.384738 | 8.4:-23206516 | MS.gene71935:CDS |
| TGGTGTTATTATGTTTGTTA+TGG | 0.385001 | 8.4:-23207575 | MS.gene71935:CDS |
| GAAAATAACATTGACAAAGA+TGG | 0.388204 | 8.4:-23206440 | MS.gene71935:CDS |
| ATGGGGAGTGACCAATTATA+TGG | 0.392822 | 8.4:+23206569 | None:intergenic |
| TTGAATCAAGATGTCATAAC+AGG | 0.394357 | 8.4:-23206146 | MS.gene71935:CDS |
| AAAGTCTCTCACTAGTGATA+TGG | 0.398070 | 8.4:+23206123 | None:intergenic |
| AAGTAGCTGCTGTTGGTGTT+GGG | 0.416316 | 8.4:-23207177 | MS.gene71935:CDS |
| TTATGGATCCGAAAACTAAT+CGG | 0.416338 | 8.4:+23207022 | None:intergenic |
| ATTGGGATGCAACTATTCAT+TGG | 0.418222 | 8.4:-23206727 | MS.gene71935:CDS |
| TCTGTTACGTGTTTGAATAC+TGG | 0.424899 | 8.4:-23206032 | MS.gene71935:CDS |
| GCAAGGGAACCATAGTTTGC+GGG | 0.425897 | 8.4:+23207885 | None:intergenic |
| TTGGGATGCAACTATTCATT+GGG | 0.426148 | 8.4:-23206726 | MS.gene71935:CDS |
| GCTAATTCTATGCCTTCTCT+TGG | 0.426410 | 8.4:-23207721 | MS.gene71935:CDS |
| CAAGTAGCTGCTGTTGGTGT+TGG | 0.430580 | 8.4:-23207178 | MS.gene71935:CDS |
| GGTTTGTTGCTGTTAGATAT+AGG | 0.434375 | 8.4:-23207132 | MS.gene71935:CDS |
| AAAATAACATTGACAAAGAT+GGG | 0.438230 | 8.4:-23206439 | MS.gene71935:CDS |
| GGTGTCCAAATGTGAGGAAA+AGG | 0.448572 | 8.4:-23207111 | MS.gene71935:CDS |
| TGGAAGGGTATTGGACTGAT+AGG | 0.449136 | 8.4:-23207066 | MS.gene71935:CDS |
| TTGCAAGGATTCAAAGGAGT+TGG | 0.456334 | 8.4:-23206638 | MS.gene71935:CDS |
| GTGATAATTGCTGATATATT+GGG | 0.460994 | 8.4:-23206086 | MS.gene71935:CDS |
| AGCATGGCCTATAAAAGTAT+TGG | 0.464015 | 8.4:-23206210 | MS.gene71935:CDS |
| AGCAGTCCTCAATTTATACT+TGG | 0.465661 | 8.4:-23207358 | MS.gene71935:CDS |
| AGGTGATGATGAAAGACAAT+TGG | 0.467748 | 8.4:-23206745 | MS.gene71935:CDS |
| TAATCGGTGGTTTAGGAAGT+TGG | 0.470451 | 8.4:-23207002 | MS.gene71935:CDS |
| ATCTTATTTGATGTCTTGGT+CGG | 0.471584 | 8.4:-23207260 | MS.gene71935:CDS |
| ACGAAAGATTAAACATTACA+TGG | 0.473168 | 8.4:-23207512 | MS.gene71935:CDS |
| TTGTGTATTAAACTACAGAT+AGG | 0.474492 | 8.4:-23206950 | MS.gene71935:CDS |
| ATGCTTGCTAGTGTCACAAT+GGG | 0.474989 | 8.4:+23206551 | None:intergenic |
| CTATTGCTCCTGCTTTGAGA+TGG | 0.477023 | 8.4:-23207153 | MS.gene71935:CDS |
| TGCCATGATTTGCACTATCA+TGG | 0.477597 | 8.4:-23207743 | MS.gene71935:CDS |
| AAAACAACAAGAGTTTGATA+AGG | 0.479736 | 8.4:-23207434 | MS.gene71935:CDS |
| TAGATTCCTATCCATGGCAT+TGG | 0.480860 | 8.4:+23207973 | None:intergenic |
| CACCATGCAAAGGAAGAATT+CGG | 0.481803 | 8.4:+23206600 | None:intergenic |
| TTTCAATTTACCCTATGTGT+TGG | 0.483405 | 8.4:-23206895 | MS.gene71935:CDS |
| TCCCTCTGTACTATCTTCAC+TGG | 0.489314 | 8.4:-23205844 | MS.gene71935:CDS |
| ATCTTGATTCAACAGAAGAA+TGG | 0.490265 | 8.4:+23206157 | None:intergenic |
| CACGTAACAGATATAACATA+AGG | 0.492851 | 8.4:+23206044 | None:intergenic |
| TGCAAGGGAACCATAGTTTG+CGG | 0.495659 | 8.4:+23207884 | None:intergenic |
| ACAGCGGAAATTGTGTGGCT+TGG | 0.498066 | 8.4:-23206395 | MS.gene71935:CDS |
| AGCGTTTCGAGTTTAGGATC+AGG | 0.502068 | 8.4:-23206827 | MS.gene71935:CDS |
| ATAGTTCAAGTAGCTGCTGT+TGG | 0.504833 | 8.4:-23207184 | MS.gene71935:CDS |
| TGATCATGCCGGTGAGGCAT+AGG | 0.505034 | 8.4:+23207787 | None:intergenic |
| GTGGGACTAATATTGAAGAT+TGG | 0.516737 | 8.4:-23205899 | MS.gene71935:CDS |
| GGTGATGATGAAAGACAATT+GGG | 0.520329 | 8.4:-23206744 | MS.gene71935:CDS |
| AGTTTGATAAGGTTACTGAT+AGG | 0.520646 | 8.4:-23207423 | MS.gene71935:CDS |
| AGGAGAGGAAGAGTTGGTTG+AGG | 0.523488 | 8.4:-23206765 | MS.gene71935:CDS |
| TGTGTATTAAACTACAGATA+GGG | 0.533409 | 8.4:-23206949 | MS.gene71935:CDS |
| CATAGCCAAAACATTCATCA+TGG | 0.534666 | 8.4:+23207678 | None:intergenic |
| CCTAGAGTGGATTTCTGCCG+TGG | 0.535174 | 8.4:-23205918 | MS.gene71935:CDS |
| GTCCTCAATTTATACTTGGA+AGG | 0.536449 | 8.4:-23207354 | MS.gene71935:CDS |
| GAGATCAACGGAGAGTTTGA+CGG | 0.537395 | 8.4:+23207816 | None:intergenic |
| TTTAGGATCAGGCACAAAGC+AGG | 0.537499 | 8.4:-23206816 | MS.gene71935:CDS |
| AAAGAGAGCATTTCCTAGAG+TGG | 0.537845 | 8.4:-23205931 | MS.gene71935:CDS |
| TGGTCGGTTAAATTCTGCAC+TGG | 0.538042 | 8.4:-23207244 | MS.gene71935:CDS |
| TTGAGACAAAAGTATTTGCA+AGG | 0.538484 | 8.4:+23207868 | None:intergenic |
| TAATTTAGTAGAATTTGTGC+AGG | 0.538913 | 8.4:+23205809 | None:intergenic |
| TCAATCTTGCAAGGATTCAA+AGG | 0.541067 | 8.4:-23206644 | MS.gene71935:CDS |
| GACCGAATTCTTCCTTTGCA+TGG | 0.544863 | 8.4:-23206602 | MS.gene71935:CDS |
| CTGGTGAATGTGATTACAAA+TGG | 0.547354 | 8.4:-23207225 | MS.gene71935:CDS |
| GAACTGATCTCTATAGAAAG+TGG | 0.548534 | 8.4:-23206373 | MS.gene71935:CDS |
| AGCCATGATAGTGCAAATCA+TGG | 0.549705 | 8.4:+23207741 | None:intergenic |
| ATCCCAAGATCCAACACATA+GGG | 0.550450 | 8.4:+23206885 | None:intergenic |
| TCAACACTCCTATGCCTCAC+CGG | 0.551904 | 8.4:-23207795 | MS.gene71935:CDS |
| AAGAATATGTGCAACAGTGA+AGG | 0.562876 | 8.4:-23208024 | MS.gene71935:CDS |
| GACCTTCCAAGTATAAATTG+AGG | 0.576629 | 8.4:+23207352 | None:intergenic |
| ATTTCAGCAAACCAATGCCA+TGG | 0.577285 | 8.4:-23207984 | MS.gene71935:CDS |
| AATCCCAAGATCCAACACAT+AGG | 0.577754 | 8.4:+23206884 | None:intergenic |
| CGGTTTATTCTGCATCTCGA+AGG | 0.578932 | 8.4:-23206785 | MS.gene71935:CDS |
| ATGGGGAATTCATTAAAGCT+CGG | 0.585709 | 8.4:-23206421 | MS.gene71935:CDS |
| CCACGGCAGAAATCCACTCT+AGG | 0.586419 | 8.4:+23205918 | None:intergenic |
| GCTTTGCTAGCTGATCATGC+CGG | 0.587589 | 8.4:+23207776 | None:intergenic |
| AATGCTTGCTAGTGTCACAA+TGG | 0.588252 | 8.4:+23206550 | None:intergenic |
| GCTATGTAGATTCCTATCCA+TGG | 0.588339 | 8.4:+23207967 | None:intergenic |
| GCAACAAACCATCTCAAAGC+AGG | 0.589830 | 8.4:+23207145 | None:intergenic |
| GTTTAATGCTTAAGCAGAAG+AGG | 0.590609 | 8.4:-23205875 | MS.gene71935:CDS |
| CTAGAGTGGATTTCTGCCGT+GGG | 0.592323 | 8.4:-23205917 | MS.gene71935:CDS |
| GCGAGAAGAATCAAACTCAA+AGG | 0.592711 | 8.4:-23207458 | MS.gene71935:CDS |
| TCCAGTGAAGATAGTACAGA+GGG | 0.597861 | 8.4:+23205843 | None:intergenic |
| GGAAACAGCGATTATGGTCA+AGG | 0.602310 | 8.4:+23207837 | None:intergenic |
| TCTCGAAGGAGAGGAAGAGT+TGG | 0.603815 | 8.4:-23206771 | MS.gene71935:CDS |
| TTCTGCGTTACACCAAGAGA+AGG | 0.609942 | 8.4:+23207709 | None:intergenic |
| ATGTCTGCAGATCTCATCAA+AGG | 0.611092 | 8.4:-23207916 | MS.gene71935:CDS |
| AGCAAACCAATGCCATGGAT+AGG | 0.618922 | 8.4:-23207979 | MS.gene71935:CDS |
| AATCTTCAATATTAGTCCCA+CGG | 0.619042 | 8.4:+23205901 | None:intergenic |
| ACTATTCATTGGGTTCAACA+AGG | 0.621311 | 8.4:-23206716 | MS.gene71935:CDS |
| CTCTGTACTATCTTCACTGG+AGG | 0.621968 | 8.4:-23205841 | MS.gene71935:CDS |
| GGAAAACAGCGGAAATTGTG+TGG | 0.624134 | 8.4:-23206400 | MS.gene71935:CDS |
| TATTCTGCATCTCGAAGGAG+AGG | 0.624822 | 8.4:-23206780 | MS.gene71935:CDS |
| GATATAGGTGTCCAAATGTG+AGG | 0.626396 | 8.4:-23207117 | MS.gene71935:CDS |
| CATAGGAGTGTTGAGATCAA+CGG | 0.634065 | 8.4:+23207804 | None:intergenic |
| GGAGGTTCTACACCATGCAA+AGG | 0.640891 | 8.4:+23206590 | None:intergenic |
| GCTAGCTGATCATGCCGGTG+AGG | 0.641170 | 8.4:+23207781 | None:intergenic |
| TGAGACAAAAGTATTTGCAA+GGG | 0.647084 | 8.4:+23207869 | None:intergenic |
| GGGAGTGACCAATTATATGG+AGG | 0.669045 | 8.4:+23206572 | None:intergenic |
| TTAAAGTAAGTCCTTCAGCA+TGG | 0.672802 | 8.4:-23206226 | MS.gene71935:CDS |
| TATTAAACTACAGATAGGGA+TGG | 0.673003 | 8.4:-23206945 | MS.gene71935:CDS |
| AAATAACATTGACAAAGATG+GGG | 0.675781 | 8.4:-23206438 | MS.gene71935:CDS |
| CATTAAAGCTCGGAAAACAG+CGG | 0.676723 | 8.4:-23206411 | MS.gene71935:CDS |
| GTATTGGACTGATAGGCTAG+TGG | 0.680875 | 8.4:-23207059 | MS.gene71935:CDS |
| CTCCAGTGAAGATAGTACAG+AGG | 0.707560 | 8.4:+23205842 | None:intergenic |
| TGCTTGCTAGTGTCACAATG+GGG | 0.738579 | 8.4:+23206552 | None:intergenic |
| GCACAAAGCAGGATCTACGA+CGG | 0.742357 | 8.4:-23206805 | MS.gene71935:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAACATTGACAAAGAT+GGG | - | chr8.4:23207373-23207392 | MS.gene71935:CDS | 20.0% |
| !! | CACAAATTCTACTAAATTAA+GGG | - | chr8.4:23208007-23208026 | MS.gene71935:CDS | 20.0% |
| !!! | AAAACTTGTTATTGAGTTAT+TGG | - | chr8.4:23207134-23207153 | MS.gene71935:CDS | 20.0% |
| !!! | AATAACTCAATAACAAGTTT+TGG | + | chr8.4:23207135-23207154 | None:intergenic | 20.0% |
| ! | AAAAAATGTTCAATCTTGCA+AGG | - | chr8.4:23207159-23207178 | MS.gene71935:CDS | 25.0% |
| ! | AAAACAACAAGAGTTTGATA+AGG | - | chr8.4:23206378-23206397 | MS.gene71935:CDS | 25.0% |
| ! | AAATAACATTGACAAAGATG+GGG | - | chr8.4:23207374-23207393 | MS.gene71935:CDS | 25.0% |
| ! | ACGAAAGATTAAACATTACA+TGG | - | chr8.4:23206300-23206319 | MS.gene71935:CDS | 25.0% |
| ! | ATTTGTATACAGTTTGTAAC+TGG | - | chr8.4:23206187-23206206 | MS.gene71935:CDS | 25.0% |
| ! | GAAAATAACATTGACAAAGA+TGG | - | chr8.4:23207372-23207391 | MS.gene71935:CDS | 25.0% |
| ! | GCACAAATTCTACTAAATTA+AGG | - | chr8.4:23208006-23208025 | MS.gene71935:CDS | 25.0% |
| ! | GTGATAATTGCTGATATATT+GGG | - | chr8.4:23207726-23207745 | MS.gene71935:CDS | 25.0% |
| ! | TAATTTAGTAGAATTTGTGC+AGG | + | chr8.4:23208006-23208025 | None:intergenic | 25.0% |
| ! | TGTGTATTAAACTACAGATA+GGG | - | chr8.4:23206863-23206882 | MS.gene71935:CDS | 25.0% |
| ! | TTGTGTATTAAACTACAGAT+AGG | - | chr8.4:23206862-23206881 | MS.gene71935:CDS | 25.0% |
| !! | ATTGATGAAATTTTGGATGA+TGG | - | chr8.4:23206423-23206442 | MS.gene71935:CDS | 25.0% |
| !! | GAGATGAATTGATGAAATTT+TGG | - | chr8.4:23206416-23206435 | MS.gene71935:CDS | 25.0% |
| !! | TTTTCTATGAACTTCACATA+AGG | + | chr8.4:23207357-23207376 | None:intergenic | 25.0% |
| !!! | AAGAAAATTTTTCAAGTGGA+AGG | - | chr8.4:23206730-23206749 | MS.gene71935:CDS | 25.0% |
| !!! | AGAAAATTTTTCAAGTGGAA+GGG | - | chr8.4:23206731-23206750 | MS.gene71935:CDS | 25.0% |
| !!! | TGGTGTTATTATGTTTGTTA+TGG | - | chr8.4:23206237-23206256 | MS.gene71935:CDS | 25.0% |
| !!! | TTTGAAGCCAATACTTTTAT+AGG | + | chr8.4:23207612-23207631 | None:intergenic | 25.0% |
| AATCTTCAATATTAGTCCCA+CGG | + | chr8.4:23207914-23207933 | None:intergenic | 30.0% | |
| ACCAAACACTTCTCAATATT+TGG | + | chr8.4:23207300-23207319 | None:intergenic | 30.0% | |
| AGTTTGATAAGGTTACTGAT+AGG | - | chr8.4:23206389-23206408 | MS.gene71935:CDS | 30.0% | |
| ATCTTGATTCAACAGAAGAA+TGG | + | chr8.4:23207658-23207677 | None:intergenic | 30.0% | |
| CACGTAACAGATATAACATA+AGG | + | chr8.4:23207771-23207790 | None:intergenic | 30.0% | |
| GGTGATAATTGCTGATATAT+TGG | - | chr8.4:23207725-23207744 | MS.gene71935:CDS | 30.0% | |
| TATTAAACTACAGATAGGGA+TGG | - | chr8.4:23206867-23206886 | MS.gene71935:CDS | 30.0% | |
| TTATGGATCCGAAAACTAAT+CGG | + | chr8.4:23206793-23206812 | None:intergenic | 30.0% | |
| TTGAATCAAGATGTCATAAC+AGG | - | chr8.4:23207666-23207685 | MS.gene71935:CDS | 30.0% | |
| TTTCAATTTACCCTATGTGT+TGG | - | chr8.4:23206917-23206936 | MS.gene71935:CDS | 30.0% | |
| ! | ATCTTATTTGATGTCTTGGT+CGG | - | chr8.4:23206552-23206571 | MS.gene71935:CDS | 30.0% |
| ! | TGAAACCATGATGAATGTTT+TGG | - | chr8.4:23206129-23206148 | MS.gene71935:CDS | 30.0% |
| ! | TTCGATCTTATTTGATGTCT+TGG | - | chr8.4:23206548-23206567 | MS.gene71935:CDS | 30.0% |
| !! | TCCAAATATTGAGAAGTGTT+TGG | - | chr8.4:23207296-23207315 | MS.gene71935:CDS | 30.0% |
| !! | TGAGACAAAAGTATTTGCAA+GGG | + | chr8.4:23205946-23205965 | None:intergenic | 30.0% |
| !! | TTAGTTTTCGGATCCATAAT+CGG | - | chr8.4:23206794-23206813 | MS.gene71935:CDS | 30.0% |
| !! | TTGAGACAAAAGTATTTGCA+AGG | + | chr8.4:23205947-23205966 | None:intergenic | 30.0% |
| !!! | CTGCAAGAAAATTTTTCAAG+TGG | - | chr8.4:23206726-23206745 | MS.gene71935:CDS | 30.0% |
| !!! | TATGAGTTTTGGATTGAACA+TGG | - | chr8.4:23206217-23206236 | MS.gene71935:CDS | 30.0% |
| AAAGTCTCTCACTAGTGATA+TGG | + | chr8.4:23207692-23207711 | None:intergenic | 35.0% | |
| AAGAATATGTGCAACAGTGA+AGG | - | chr8.4:23205788-23205807 | MS.gene71935:CDS | 35.0% | |
| ACTATTCATTGGGTTCAACA+AGG | - | chr8.4:23207096-23207115 | MS.gene71935:CDS | 35.0% | |
| AGACAAGCAGTTTATGTTCT+TGG | - | chr8.4:23207828-23207847 | MS.gene71935:CDS | 35.0% | |
| AGCAGTCCTCAATTTATACT+TGG | - | chr8.4:23206454-23206473 | MS.gene71935:CDS | 35.0% | |
| ATGGGGAATTCATTAAAGCT+CGG | - | chr8.4:23207391-23207410 | MS.gene71935:CDS | 35.0% | |
| ATTGGGATGCAACTATTCAT+TGG | - | chr8.4:23207085-23207104 | MS.gene71935:CDS | 35.0% | |
| CATAGCCAAAACATTCATCA+TGG | + | chr8.4:23206137-23206156 | None:intergenic | 35.0% | |
| CTGGTGAATGTGATTACAAA+TGG | - | chr8.4:23206587-23206606 | MS.gene71935:CDS | 35.0% | |
| GAACTGATCTCTATAGAAAG+TGG | - | chr8.4:23207439-23207458 | MS.gene71935:CDS | 35.0% | |
| GACCTTCCAAGTATAAATTG+AGG | + | chr8.4:23206463-23206482 | None:intergenic | 35.0% | |
| GTCCTCAATTTATACTTGGA+AGG | - | chr8.4:23206458-23206477 | MS.gene71935:CDS | 35.0% | |
| GTGGGACTAATATTGAAGAT+TGG | - | chr8.4:23207913-23207932 | MS.gene71935:CDS | 35.0% | |
| GTGTAGAACCTCCATATAAT+TGG | - | chr8.4:23207232-23207251 | MS.gene71935:CDS | 35.0% | |
| GTTTAATGCTTAAGCAGAAG+AGG | - | chr8.4:23207937-23207956 | MS.gene71935:CDS | 35.0% | |
| TAGCTGAGTTTGCAAAAACA+AGG | - | chr8.4:23207526-23207545 | MS.gene71935:CDS | 35.0% | |
| TCAATCTTGCAAGGATTCAA+AGG | - | chr8.4:23207168-23207187 | MS.gene71935:CDS | 35.0% | |
| TCTGTTACGTGTTTGAATAC+TGG | - | chr8.4:23207780-23207799 | MS.gene71935:CDS | 35.0% | |
| TTAAAGTAAGTCCTTCAGCA+TGG | - | chr8.4:23207586-23207605 | MS.gene71935:CDS | 35.0% | |
| TTGGGATGCAACTATTCATT+GGG | - | chr8.4:23207086-23207105 | MS.gene71935:CDS | 35.0% | |
| ! | AGCATGGCCTATAAAAGTAT+TGG | - | chr8.4:23207602-23207621 | MS.gene71935:CDS | 35.0% |
| ! | AGGTGATGATGAAAGACAAT+TGG | - | chr8.4:23207067-23207086 | MS.gene71935:CDS | 35.0% |
| ! | GGTGATGATGAAAGACAATT+GGG | - | chr8.4:23207068-23207087 | MS.gene71935:CDS | 35.0% |
| ! | TTTTGTAGGACTTGGAAACT+CGG | - | chr8.4:23206958-23206977 | MS.gene71935:CDS | 35.0% |
| !! | GGTTTGTTGCTGTTAGATAT+AGG | - | chr8.4:23206680-23206699 | MS.gene71935:CDS | 35.0% |
| !! | TGGGATTTTGTGAGTTTTGT+AGG | - | chr8.4:23206944-23206963 | MS.gene71935:CDS | 35.0% |
| !! | TGTTTTTGCAAACTCAGCTA+GGG | + | chr8.4:23207526-23207545 | None:intergenic | 35.0% |
| !! | TTTGTGAGTTTTGTAGGACT+TGG | - | chr8.4:23206950-23206969 | MS.gene71935:CDS | 35.0% |
| !!! | CATGATGAATGTTTTGGCTA+TGG | - | chr8.4:23206135-23206154 | MS.gene71935:CDS | 35.0% |
| !!! | CTGGTGTTATCTATGAGTTT+TGG | - | chr8.4:23206206-23206225 | MS.gene71935:CDS | 35.0% |
| !!! | GAGAAAGTCCGATTAGTTTT+CGG | - | chr8.4:23206782-23206801 | MS.gene71935:CDS | 35.0% |
| !!! | GAGACTTTTTGAAGCAGTAA+CGG | - | chr8.4:23207704-23207723 | MS.gene71935:CDS | 35.0% |
| !!! | TTGTTTTTGCAAACTCAGCT+AGG | + | chr8.4:23207527-23207546 | None:intergenic | 35.0% |
| !!! | TTTTTCAAGTGGAAGGGTAT+TGG | - | chr8.4:23206737-23206756 | MS.gene71935:CDS | 35.0% |
| AATCCCAAGATCCAACACAT+AGG | + | chr8.4:23206931-23206950 | None:intergenic | 40.0% | |
| ATAGTTCAAGTAGCTGCTGT+TGG | - | chr8.4:23206628-23206647 | MS.gene71935:CDS | 40.0% | |
| ATCCCAAGATCCAACACATA+GGG | + | chr8.4:23206930-23206949 | None:intergenic | 40.0% | |
| ATGGGGAGTGACCAATTATA+TGG | + | chr8.4:23207246-23207265 | None:intergenic | 40.0% | |
| ATGTCTGCAGATCTCATCAA+AGG | - | chr8.4:23205896-23205915 | MS.gene71935:CDS | 40.0% | |
| ATTTCAGCAAACCAATGCCA+TGG | - | chr8.4:23205828-23205847 | MS.gene71935:CDS | 40.0% | |
| CACCATGCAAAGGAAGAATT+CGG | + | chr8.4:23207215-23207234 | None:intergenic | 40.0% | |
| CATTAAAGCTCGGAAAACAG+CGG | - | chr8.4:23207401-23207420 | MS.gene71935:CDS | 40.0% | |
| GATATAGGTGTCCAAATGTG+AGG | - | chr8.4:23206695-23206714 | MS.gene71935:CDS | 40.0% | |
| GCGAGAAGAATCAAACTCAA+AGG | - | chr8.4:23206354-23206373 | MS.gene71935:CDS | 40.0% | |
| GCTAATTCTATGCCTTCTCT+TGG | - | chr8.4:23206091-23206110 | MS.gene71935:CDS | 40.0% | |
| GCTATGTAGATTCCTATCCA+TGG | + | chr8.4:23205848-23205867 | None:intergenic | 40.0% | |
| TAATCGGTGGTTTAGGAAGT+TGG | - | chr8.4:23206810-23206829 | MS.gene71935:CDS | 40.0% | |
| TACCCTATGTGTTGGATCTT+GGG | - | chr8.4:23206925-23206944 | MS.gene71935:CDS | 40.0% | |
| TAGATTCCTATCCATGGCAT+TGG | + | chr8.4:23205842-23205861 | None:intergenic | 40.0% | |
| TCAGTTTCATGTACTGCTTC+TGG | - | chr8.4:23206481-23206500 | MS.gene71935:CDS | 40.0% | |
| TCCAGTGAAGATAGTACAGA+GGG | + | chr8.4:23207972-23207991 | None:intergenic | 40.0% | |
| TTACCCTATGTGTTGGATCT+TGG | - | chr8.4:23206924-23206943 | MS.gene71935:CDS | 40.0% | |
| TTGCAAGGATTCAAAGGAGT+TGG | - | chr8.4:23207174-23207193 | MS.gene71935:CDS | 40.0% | |
| TTTGACGGAAACAGCGATTA+TGG | + | chr8.4:23205984-23206003 | None:intergenic | 40.0% | |
| ! | AATGCTTGCTAGTGTCACAA+TGG | + | chr8.4:23207265-23207284 | None:intergenic | 40.0% |
| ! | ACTTCCTAAACCACCGATTA+TGG | + | chr8.4:23206810-23206829 | None:intergenic | 40.0% |
| ! | ACTTTTATAGGCCATGCTGA+AGG | + | chr8.4:23207600-23207619 | None:intergenic | 40.0% |
| ! | AGCCATGATAGTGCAAATCA+TGG | + | chr8.4:23206074-23206093 | None:intergenic | 40.0% |
| ! | ATGCTTGCTAGTGTCACAAT+GGG | + | chr8.4:23207264-23207283 | None:intergenic | 40.0% |
| ! | TGCCATGATTTGCACTATCA+TGG | - | chr8.4:23206069-23206088 | MS.gene71935:CDS | 40.0% |
| !! | AAAGAGAGCATTTCCTAGAG+TGG | - | chr8.4:23207881-23207900 | MS.gene71935:CDS | 40.0% |
| !! | CATAGGAGTGTTGAGATCAA+CGG | + | chr8.4:23206011-23206030 | None:intergenic | 40.0% |
| AGCAAACCAATGCCATGGAT+AGG | - | chr8.4:23205833-23205852 | MS.gene71935:CDS | 45.0% | |
| CGGTTTATTCTGCATCTCGA+AGG | - | chr8.4:23207027-23207046 | MS.gene71935:CDS | 45.0% | |
| CTCCAGTGAAGATAGTACAG+AGG | + | chr8.4:23207973-23207992 | None:intergenic | 45.0% | |
| CTCTGTACTATCTTCACTGG+AGG | - | chr8.4:23207971-23207990 | MS.gene71935:CDS | 45.0% | |
| GACCGAATTCTTCCTTTGCA+TGG | - | chr8.4:23207210-23207229 | MS.gene71935:CDS | 45.0% | |
| GAGATCAACGGAGAGTTTGA+CGG | + | chr8.4:23205999-23206018 | None:intergenic | 45.0% | |
| GCAACAAACCATCTCAAAGC+AGG | + | chr8.4:23206670-23206689 | None:intergenic | 45.0% | |
| GCATCAAAACCCGCAAACTA+TGG | - | chr8.4:23205918-23205937 | MS.gene71935:CDS | 45.0% | |
| GGAAAACAGCGGAAATTGTG+TGG | - | chr8.4:23207412-23207431 | MS.gene71935:CDS | 45.0% | |
| GGAAACAGCGATTATGGTCA+AGG | + | chr8.4:23205978-23205997 | None:intergenic | 45.0% | |
| GGATCCATAATCGGTGGTTT+AGG | - | chr8.4:23206803-23206822 | MS.gene71935:CDS | 45.0% | |
| GGGAGTGACCAATTATATGG+AGG | + | chr8.4:23207243-23207262 | None:intergenic | 45.0% | |
| GGTGTCCAAATGTGAGGAAA+AGG | - | chr8.4:23206701-23206720 | MS.gene71935:CDS | 45.0% | |
| GTATTGGACTGATAGGCTAG+TGG | - | chr8.4:23206753-23206772 | MS.gene71935:CDS | 45.0% | |
| TATTCTGCATCTCGAAGGAG+AGG | - | chr8.4:23207032-23207051 | MS.gene71935:CDS | 45.0% | |
| TCCCTCTGTACTATCTTCAC+TGG | - | chr8.4:23207968-23207987 | MS.gene71935:CDS | 45.0% | |
| TGCAAGGGAACCATAGTTTG+CGG | + | chr8.4:23205931-23205950 | None:intergenic | 45.0% | |
| TGGTCGGTTAAATTCTGCAC+TGG | - | chr8.4:23206568-23206587 | MS.gene71935:CDS | 45.0% | |
| TTCTGCGTTACACCAAGAGA+AGG | + | chr8.4:23206106-23206125 | None:intergenic | 45.0% | |
| ! | AAGTAGCTGCTGTTGGTGTT+GGG | - | chr8.4:23206635-23206654 | MS.gene71935:CDS | 45.0% |
| ! | CAGCTCCTTTTCCTCACATT+TGG | + | chr8.4:23206709-23206728 | None:intergenic | 45.0% |
| ! | GTTTTCGGATCCATAATCGG+TGG | - | chr8.4:23206797-23206816 | MS.gene71935:CDS | 45.0% |
| ! | TGCTTGCTAGTGTCACAATG+GGG | + | chr8.4:23207263-23207282 | None:intergenic | 45.0% |
| ! | TTTAGGATCAGGCACAAAGC+AGG | - | chr8.4:23206996-23207015 | MS.gene71935:CDS | 45.0% |
| !! | AGCGTTTCGAGTTTAGGATC+AGG | - | chr8.4:23206985-23207004 | MS.gene71935:CDS | 45.0% |
| !! | CTATTGCTCCTGCTTTGAGA+TGG | - | chr8.4:23206659-23206678 | MS.gene71935:CDS | 45.0% |
| !! | GGTTCTAGCGTTTCGAGTTT+AGG | - | chr8.4:23206979-23206998 | MS.gene71935:CDS | 45.0% |
| !! | TGGAAGGGTATTGGACTGAT+AGG | - | chr8.4:23206746-23206765 | MS.gene71935:CDS | 45.0% |
| ACAGCGGAAATTGTGTGGCT+TGG | - | chr8.4:23207417-23207436 | MS.gene71935:CDS | 50.0% | |
| CAAGTAGCTGCTGTTGGTGT+TGG | - | chr8.4:23206634-23206653 | MS.gene71935:CDS | 50.0% | |
| GCACAAAGCAGGATCTACGA+CGG | - | chr8.4:23207007-23207026 | MS.gene71935:CDS | 50.0% | |
| GCTTTGCTAGCTGATCATGC+CGG | + | chr8.4:23206039-23206058 | None:intergenic | 50.0% | |
| GGAGGTTCTACACCATGCAA+AGG | + | chr8.4:23207225-23207244 | None:intergenic | 50.0% | |
| TCAACACTCCTATGCCTCAC+CGG | - | chr8.4:23206017-23206036 | MS.gene71935:CDS | 50.0% | |
| TCTCGAAGGAGAGGAAGAGT+TGG | - | chr8.4:23207041-23207060 | MS.gene71935:CDS | 50.0% | |
| ! | AGGAGAGGAAGAGTTGGTTG+AGG | - | chr8.4:23207047-23207066 | MS.gene71935:CDS | 50.0% |
| ! | CTAGAGTGGATTTCTGCCGT+GGG | - | chr8.4:23207895-23207914 | MS.gene71935:CDS | 50.0% |
| ! | GCAAGGGAACCATAGTTTGC+GGG | + | chr8.4:23205930-23205949 | None:intergenic | 50.0% |
| CCACGGCAGAAATCCACTCT+AGG | + | chr8.4:23207897-23207916 | None:intergenic | 55.0% | |
| TGATCATGCCGGTGAGGCAT+AGG | + | chr8.4:23206028-23206047 | None:intergenic | 55.0% | |
| ! | CCTAGAGTGGATTTCTGCCG+TGG | - | chr8.4:23207894-23207913 | MS.gene71935:CDS | 55.0% |
| GCTAGCTGATCATGCCGGTG+AGG | + | chr8.4:23206034-23206053 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 23205782 | 23208052 | 23205782 | ID=MS.gene71935 |
| chr8.4 | mRNA | 23205782 | 23208052 | 23205782 | ID=MS.gene71935.t1;Parent=MS.gene71935 |
| chr8.4 | exon | 23205782 | 23208052 | 23205782 | ID=MS.gene71935.t1.exon1;Parent=MS.gene71935.t1 |
| chr8.4 | CDS | 23205782 | 23208052 | 23205782 | ID=cds.MS.gene71935.t1;Parent=MS.gene71935.t1 |
| Gene Sequence |
| Protein sequence |
