Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76118.t1 | XP_024639058.1 | 98.6 | 561 | 8 | 0 | 1 | 561 | 1 | 561 | 0.00E+00 | 1129 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76118.t1 | G7K7B5 | 98.6 | 561 | 8 | 0 | 1 | 561 | 1 | 561 | 0.0e+00 | 1129.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049873 | MS.gene76118 | -0.801248 | 9.85E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene76118 | -0.806631 | 7.49E-50 | -1.69E-46 |
| MS.gene050303 | MS.gene76118 | -0.840158 | 1.03E-57 | -1.69E-46 |
| MS.gene050815 | MS.gene76118 | -0.808744 | 2.66E-50 | -1.69E-46 |
| MS.gene051330 | MS.gene76118 | -0.809819 | 1.57E-50 | -1.69E-46 |
| MS.gene05134 | MS.gene76118 | -0.807376 | 5.21E-50 | -1.69E-46 |
| MS.gene052302 | MS.gene76118 | -0.812775 | 3.58E-51 | -1.69E-46 |
| MS.gene052376 | MS.gene76118 | -0.827248 | 1.74E-54 | -1.69E-46 |
| MS.gene053054 | MS.gene76118 | 0.807356 | 5.26E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene76118 | -0.800256 | 1.57E-48 | -1.69E-46 |
| MS.gene055808 | MS.gene76118 | -0.83776 | 4.30E-57 | -1.69E-46 |
| MS.gene056091 | MS.gene76118 | -0.807822 | 4.19E-50 | -1.69E-46 |
| MS.gene056631 | MS.gene76118 | -0.824531 | 7.68E-54 | -1.69E-46 |
| MS.gene056642 | MS.gene76118 | -0.818726 | 1.69E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene76118 | -0.813943 | 1.98E-51 | -1.69E-46 |
| MS.gene057705 | MS.gene76118 | -0.802433 | 5.62E-49 | -1.69E-46 |
| MS.gene058216 | MS.gene76118 | -0.811099 | 8.29E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene76118 | -0.832173 | 1.10E-55 | -1.69E-46 |
| MS.gene059569 | MS.gene76118 | -0.813517 | 2.46E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene76118 | -0.822685 | 2.08E-53 | -1.69E-46 |
| MS.gene060429 | MS.gene76118 | -0.867966 | 9.26E-66 | -1.69E-46 |
| MS.gene060572 | MS.gene76118 | -0.806489 | 8.02E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76118.t1 | MTR_5g083740 | 98.574 | 561 | 8 | 0 | 1 | 561 | 1 | 561 | 0.0 | 1158 |
| MS.gene76118.t1 | MTR_3g072040 | 63.186 | 565 | 141 | 6 | 1 | 561 | 1 | 502 | 0.0 | 653 |
| MS.gene76118.t1 | MTR_3g072070 | 66.667 | 483 | 133 | 5 | 1 | 479 | 1 | 459 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76118.t1 | AT3G10980 | 59.298 | 570 | 206 | 10 | 5 | 560 | 6 | 563 | 0.0 | 631 |
| MS.gene76118.t1 | AT5G05350 | 56.929 | 534 | 199 | 7 | 30 | 560 | 20 | 525 | 0.0 | 598 |
Find 117 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTCTAGCAGTTTCTTTA+TGG | 0.127897 | 5.2:-71592214 | MS.gene76118:CDS |
| ATCTTATGCGTTGCTGTTTC+AGG | 0.172175 | 5.2:-71593377 | MS.gene76118:CDS |
| CGCATAAGATCCACGCAAAA+AGG | 0.191675 | 5.2:+71593390 | None:intergenic |
| CTAAGTTTGGCGATATCTTT+TGG | 0.228804 | 5.2:+71593179 | None:intergenic |
| CTAGGTAAAGATTATGATTC+TGG | 0.262677 | 5.2:-71592936 | MS.gene76118:CDS |
| GCATTCCTTGCCGACTTCTT+TGG | 0.266606 | 5.2:+71593308 | None:intergenic |
| TTTCGGCAAGCCTGCGGTTT+CGG | 0.267613 | 5.2:-71592466 | MS.gene76118:CDS |
| TTGAAGAAGTTGATCCTATT+AGG | 0.274814 | 5.2:+71593599 | None:intergenic |
| AATTATACCTCTTTCTCATT+TGG | 0.282202 | 5.2:+71592508 | None:intergenic |
| AGTGGCAAGACGCTTGAATT+TGG | 0.310045 | 5.2:+71593559 | None:intergenic |
| CACTTTGGCTATTCTGTTGT+TGG | 0.321220 | 5.2:-71592437 | MS.gene76118:CDS |
| GCAGTACTCCTTTCTAAGTT+TGG | 0.322615 | 5.2:+71593166 | None:intergenic |
| TTGTGCATTTGGTTGGAATA+TGG | 0.330037 | 5.2:-71592715 | MS.gene76118:CDS |
| CCTACTTATGACTTCTGTTT+CGG | 0.336304 | 5.2:-71592483 | MS.gene76118:CDS |
| GTGGAGGAATACTTGACATT+TGG | 0.338866 | 5.2:-71592779 | MS.gene76118:CDS |
| TCGAGAACTTGAAATATCTA+TGG | 0.347292 | 5.2:+71593682 | None:intergenic |
| AGGAGAACTTGTCCCAGATT+TGG | 0.348843 | 5.2:+71592284 | None:intergenic |
| GGTGTGTCATCAACCAAATC+TGG | 0.354088 | 5.2:-71592297 | MS.gene76118:CDS |
| ATTGAGGAATGTAACAATAA+TGG | 0.360036 | 5.2:-71593728 | MS.gene76118:CDS |
| CATTGAGTGCTATTCCTAAT+AGG | 0.364914 | 5.2:-71593613 | MS.gene76118:CDS |
| ACTTCATAACATAATGGTTT+CGG | 0.365084 | 5.2:-71593774 | None:intergenic |
| ATGGTTTCGGTTGATAATAA+TGG | 0.365993 | 5.2:-71593761 | MS.gene76118:CDS |
| ATCGGTGCACCTGCAATTGC+TGG | 0.371089 | 5.2:-71592981 | MS.gene76118:CDS |
| CACTTTGTGGTCTAAACTTA+GGG | 0.372572 | 5.2:-71593058 | MS.gene76118:CDS |
| GCACTTTGTGGTCTAAACTT+AGG | 0.372663 | 5.2:-71593059 | MS.gene76118:CDS |
| AGGATCAACTTCTTCAAAAT+CGG | 0.383821 | 5.2:-71593593 | MS.gene76118:CDS |
| AAGAAACTGCTAGAACTTAG+AGG | 0.389392 | 5.2:+71592219 | None:intergenic |
| TTTGCTCAATATGCACTTTG+TGG | 0.392887 | 5.2:-71593071 | MS.gene76118:CDS |
| AGATGACAATAGAATGGATT+AGG | 0.399686 | 5.2:-71593430 | MS.gene76118:CDS |
| CTTTGTATCACCGGCGGAGT+TGG | 0.401446 | 5.2:+71592111 | None:intergenic |
| TGGAGGAATACTTGACATTT+GGG | 0.407333 | 5.2:-71592778 | MS.gene76118:CDS |
| CTTGACGGTTTGAAAGTAGA+AGG | 0.422675 | 5.2:+71592243 | None:intergenic |
| TTTATCATCTACAATATGAT+AGG | 0.429440 | 5.2:+71592380 | None:intergenic |
| GAGCGCCCGGCCATCGGTGT+TGG | 0.439028 | 5.2:-71593023 | MS.gene76118:CDS |
| GCCAAGATGAAAATCCAAAA+GGG | 0.440423 | 5.2:+71592630 | None:intergenic |
| ATATTGAGGATGACACTGTT+AGG | 0.445757 | 5.2:-71592599 | MS.gene76118:CDS |
| CTTGCTCAAGAAATGCGAAC+GGG | 0.448066 | 5.2:-71592408 | MS.gene76118:CDS |
| GTATATAGACCAGCAATTGC+AGG | 0.456063 | 5.2:+71592972 | None:intergenic |
| AGGCAATGTCTAGTAGGTGC+TGG | 0.460261 | 5.2:-71592579 | MS.gene76118:CDS |
| ACAAGATGGTAGAATAACTT+TGG | 0.464879 | 5.2:+71593221 | None:intergenic |
| AGAAAGGAGTACTGCAAGAA+TGG | 0.467535 | 5.2:-71593158 | MS.gene76118:CDS |
| AATATGGAGAGACTTGGCTT+TGG | 0.469184 | 5.2:-71592699 | MS.gene76118:CDS |
| CTTGGCTGCTGTTAATATTG+AGG | 0.476409 | 5.2:-71592613 | MS.gene76118:CDS |
| CTAGAACTTAGAGGACTTGA+CGG | 0.477113 | 5.2:+71592228 | None:intergenic |
| ATCCTGTTCCTTGTCATGAC+TGG | 0.479597 | 5.2:-71593350 | MS.gene76118:CDS |
| TGTATCACCGGCGGAGTTGG+TGG | 0.481477 | 5.2:+71592114 | None:intergenic |
| AATCTTTACCTAGAGGACTA+AGG | 0.482009 | 5.2:+71592946 | None:intergenic |
| TCGCGACGCAGAGGTGAAAT+CGG | 0.484106 | 5.2:+71592321 | None:intergenic |
| TCATGAATGGAAACACATAA+TGG | 0.490549 | 5.2:-71593123 | MS.gene76118:CDS |
| TACCAGTCATGACAAGGAAC+AGG | 0.492780 | 5.2:+71593348 | None:intergenic |
| GAACTTATAAGCCTCATGAA+TGG | 0.495861 | 5.2:-71593136 | MS.gene76118:CDS |
| CATATTCCAACACCGATGGC+CGG | 0.496400 | 5.2:+71593017 | None:intergenic |
| TGAAGAAGATGACAATAGAA+TGG | 0.501131 | 5.2:-71593436 | MS.gene76118:CDS |
| AGATATCGCCAAACTTAGAA+AGG | 0.504835 | 5.2:-71593174 | MS.gene76118:CDS |
| ACGGAAGATAGTGGACCATC+TGG | 0.504935 | 5.2:+71592180 | None:intergenic |
| GGAGATTCTCTTTGTATCAC+CGG | 0.509159 | 5.2:+71592102 | None:intergenic |
| GGAGGATCCAAATGAGAAAG+AGG | 0.509367 | 5.2:-71592515 | MS.gene76118:CDS |
| AGTATTCCTCCACTCCACTT+TGG | 0.512153 | 5.2:+71592789 | None:intergenic |
| ATATTCCAACACCGATGGCC+GGG | 0.512263 | 5.2:+71593018 | None:intergenic |
| AGCCAAGATGAAAATCCAAA+AGG | 0.513987 | 5.2:+71592629 | None:intergenic |
| TATACAATCCTTAGTCCTCT+AGG | 0.515282 | 5.2:-71592954 | MS.gene76118:CDS |
| TCTGGGACAAGTTCTCCTCT+TGG | 0.516682 | 5.2:-71592279 | MS.gene76118:CDS |
| GGAATAGCACTCAATGTGCT+CGG | 0.531235 | 5.2:+71593620 | None:intergenic |
| GGTTGGAATATGGAGAGACT+TGG | 0.540609 | 5.2:-71592705 | MS.gene76118:CDS |
| CGGTTTCGGACTGCACACTT+TGG | 0.541886 | 5.2:-71592452 | MS.gene76118:CDS |
| ATCTTGTACTTCTGTGCCGA+TGG | 0.543050 | 5.2:-71593205 | MS.gene76118:CDS |
| CAAGCGTCTTGCCACTCAGA+TGG | 0.543275 | 5.2:-71593552 | MS.gene76118:CDS |
| TTATGCGTTGCTGTTTCAGG+TGG | 0.547321 | 5.2:-71593374 | MS.gene76118:CDS |
| GGCAATGTCTAGTAGGTGCT+GGG | 0.548348 | 5.2:-71592578 | MS.gene76118:CDS |
| ATAATGGTAGTGGTAATTCT+CGG | 0.552969 | 5.2:-71593107 | MS.gene76118:CDS |
| TAATGGTAAAGATGAAATTG+AGG | 0.553613 | 5.2:-71593744 | MS.gene76118:CDS |
| ATTATGTGTTTCCATTCATG+AGG | 0.556074 | 5.2:+71593125 | None:intergenic |
| GAATAGCACTCAATGTGCTC+GGG | 0.557900 | 5.2:+71593621 | None:intergenic |
| CCGAAACAGAAGTCATAAGT+AGG | 0.558846 | 5.2:+71592483 | None:intergenic |
| TTCAAGTTCTCGAAGAGCAA+TGG | 0.559290 | 5.2:-71593672 | MS.gene76118:CDS |
| AAGGCACAGATTGTGAAGCC+TGG | 0.561142 | 5.2:+71593528 | None:intergenic |
| AGATCTGAGCGCCCGGCCAT+CGG | 0.567721 | 5.2:-71593029 | MS.gene76118:CDS |
| ATGGAAACACATAATGGTAG+TGG | 0.568927 | 5.2:-71593117 | MS.gene76118:CDS |
| AGAAGTCGGCAAGGAATGCA+TGG | 0.573813 | 5.2:-71593304 | MS.gene76118:CDS |
| CTTCTGTTTCGGCAAGCCTG+CGG | 0.574737 | 5.2:-71592472 | MS.gene76118:CDS |
| GTGTGTCATCAACCAAATCT+GGG | 0.575863 | 5.2:-71592296 | MS.gene76118:CDS |
| ATTTCACCTCTGCGTCGCGA+AGG | 0.576158 | 5.2:-71592318 | MS.gene76118:CDS |
| AAGCTATGTGAACTCGGAGA+AGG | 0.576858 | 5.2:+71593509 | None:intergenic |
| TTCTGTGATTCCAAAGAAGT+CGG | 0.578176 | 5.2:-71593318 | MS.gene76118:CDS |
| TCTCTTAAGCTATGTGAACT+CGG | 0.578236 | 5.2:+71593503 | None:intergenic |
| ATGGAATATCATAGTCCAGA+TGG | 0.578861 | 5.2:-71592195 | MS.gene76118:CDS |
| GTATAAAAGATCTGAGCGCC+CGG | 0.584269 | 5.2:-71593036 | MS.gene76118:CDS |
| TGGATCGGACGAAGAATCAC+AGG | 0.586235 | 5.2:-71592916 | MS.gene76118:CDS |
| ACTGTTAGGCAATGTCTAGT+AGG | 0.586758 | 5.2:-71592585 | MS.gene76118:CDS |
| CATACAGAAAAGCATAAAAG+TGG | 0.591275 | 5.2:+71592656 | None:intergenic |
| TTGCTCAAGAAATGCGAACG+GGG | 0.591460 | 5.2:-71592407 | MS.gene76118:CDS |
| TCTTGCCACTCAGATGGACC+AGG | 0.594178 | 5.2:-71593546 | MS.gene76118:CDS |
| GCAGAGGTGAAATCGGCGGT+TGG | 0.594442 | 5.2:+71592328 | None:intergenic |
| AATGATTCCACCAACTCCGC+CGG | 0.599929 | 5.2:-71592121 | MS.gene76118:CDS |
| GTGCTCGGGAACTTTCTACC+AGG | 0.603559 | 5.2:+71593635 | None:intergenic |
| TCTTGCTCAAGAAATGCGAA+CGG | 0.603658 | 5.2:-71592409 | MS.gene76118:CDS |
| TAAAGATTATGATTCTGGAT+CGG | 0.607721 | 5.2:-71592931 | MS.gene76118:CDS |
| CCAAGATGAAAATCCAAAAG+GGG | 0.608853 | 5.2:+71592631 | None:intergenic |
| TGCTCAAGAAATGCGAACGG+GGG | 0.610733 | 5.2:-71592406 | MS.gene76118:CDS |
| GATTAGGAACCCGATGAACA+TGG | 0.611445 | 5.2:-71593414 | MS.gene76118:CDS |
| TGAGACTGAAATCATTTGAG+AGG | 0.616878 | 5.2:-71592860 | MS.gene76118:CDS |
| CAGTCGAAAATAGACCAAAG+TGG | 0.632679 | 5.2:-71592803 | MS.gene76118:CDS |
| AATAGACCAAAGTGGAGTGG+AGG | 0.635594 | 5.2:-71592795 | MS.gene76118:CDS |
| ATGGTGACAGATGAAAATCC+TGG | 0.643050 | 5.2:-71593653 | MS.gene76118:CDS |
| ATCGGCACAGAAGTACAAGA+TGG | 0.645219 | 5.2:+71593207 | None:intergenic |
| GACACACCTTCGCGACGCAG+AGG | 0.651096 | 5.2:+71592312 | None:intergenic |
| TGATTCCAAAGAAGTCGGCA+AGG | 0.653679 | 5.2:-71593313 | MS.gene76118:CDS |
| AGTGTGCAGTCCGAAACCGC+AGG | 0.654614 | 5.2:+71592456 | None:intergenic |
| TCAACATACCAGTCATGACA+AGG | 0.654796 | 5.2:+71593342 | None:intergenic |
| GATTCTCTTTGTATCACCGG+CGG | 0.656253 | 5.2:+71592105 | None:intergenic |
| GAAAATAGACCAAAGTGGAG+TGG | 0.658100 | 5.2:-71592798 | MS.gene76118:CDS |
| TATACATATTCCAACACCGA+TGG | 0.667440 | 5.2:+71593013 | None:intergenic |
| GGAGACGAGTTGACACCAAG+AGG | 0.669536 | 5.2:+71592264 | None:intergenic |
| GAATCATAATCTTTACCTAG+AGG | 0.677371 | 5.2:+71592939 | None:intergenic |
| CAAGATGAAAATCCAAAAGG+GGG | 0.678756 | 5.2:+71592632 | None:intergenic |
| CGACGCAGAGGTGAAATCGG+CGG | 0.690132 | 5.2:+71592324 | None:intergenic |
| TGAAGCCTGGTCCATCTGAG+TGG | 0.740360 | 5.2:+71593541 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATCATCTACAATATGAT+AGG | + | chr5.2:71593482-71593501 | None:intergenic | 20.0% |
| ! | AATTATACCTCTTTCTCATT+TGG | + | chr5.2:71593354-71593373 | None:intergenic | 25.0% |
| ! | ATTGAGGAATGTAACAATAA+TGG | - | chr5.2:71592131-71592150 | MS.gene76118:CDS | 25.0% |
| ! | TAAAGATTATGATTCTGGAT+CGG | - | chr5.2:71592928-71592947 | MS.gene76118:CDS | 25.0% |
| ! | TAATGGTAAAGATGAAATTG+AGG | - | chr5.2:71592115-71592134 | MS.gene76118:CDS | 25.0% |
| !! | ATATGTATAACTTTTGCGAT+CGG | - | chr5.2:71592860-71592879 | MS.gene76118:CDS | 25.0% |
| ACAAGATGGTAGAATAACTT+TGG | + | chr5.2:71592641-71592660 | None:intergenic | 30.0% | |
| AGGATCAACTTCTTCAAAAT+CGG | - | chr5.2:71592266-71592285 | MS.gene76118:CDS | 30.0% | |
| ATTATGTGTTTCCATTCATG+AGG | + | chr5.2:71592737-71592756 | None:intergenic | 30.0% | |
| CTAGGTAAAGATTATGATTC+TGG | - | chr5.2:71592923-71592942 | MS.gene76118:CDS | 30.0% | |
| GAATCATAATCTTTACCTAG+AGG | + | chr5.2:71592923-71592942 | None:intergenic | 30.0% | |
| TCATGAATGGAAACACATAA+TGG | - | chr5.2:71592736-71592755 | MS.gene76118:CDS | 30.0% | |
| TCGAGAACTTGAAATATCTA+TGG | + | chr5.2:71592180-71592199 | None:intergenic | 30.0% | |
| TGAAGAAGATGACAATAGAA+TGG | - | chr5.2:71592423-71592442 | MS.gene76118:CDS | 30.0% | |
| ! | AAGTTCTAGCAGTTTCTTTA+TGG | - | chr5.2:71593645-71593664 | MS.gene76118:CDS | 30.0% |
| ! | AGATGACAATAGAATGGATT+AGG | - | chr5.2:71592429-71592448 | MS.gene76118:CDS | 30.0% |
| ! | CACTTTTATGCTTTTCTGTA+TGG | - | chr5.2:71593204-71593223 | MS.gene76118:CDS | 30.0% |
| ! | CATACAGAAAAGCATAAAAG+TGG | + | chr5.2:71593206-71593225 | None:intergenic | 30.0% |
| ! | TTCAGAAAGCTCTTCTTTTA+CGG | + | chr5.2:71593701-71593720 | None:intergenic | 30.0% |
| ! | TTGAAGAAGTTGATCCTATT+AGG | + | chr5.2:71592263-71592282 | None:intergenic | 30.0% |
| !! | ATAATGGTAGTGGTAATTCT+CGG | - | chr5.2:71592752-71592771 | MS.gene76118:CDS | 30.0% |
| !! | ATGGTTTCGGTTGATAATAA+TGG | - | chr5.2:71592098-71592117 | MS.gene76118:CDS | 30.0% |
| !! | TTCTGTACTTTTTGTGCATT+TGG | - | chr5.2:71593133-71593152 | MS.gene76118:CDS | 30.0% |
| !!! | GGGATTGTTCTATGTTTTTT+CGG | - | chr5.2:71593301-71593320 | MS.gene76118:CDS | 30.0% |
| AAGAAACTGCTAGAACTTAG+AGG | + | chr5.2:71593643-71593662 | None:intergenic | 35.0% | |
| AATCTTTACCTAGAGGACTA+AGG | + | chr5.2:71592916-71592935 | None:intergenic | 35.0% | |
| AGATATCGCCAAACTTAGAA+AGG | - | chr5.2:71592685-71592704 | MS.gene76118:CDS | 35.0% | |
| AGCCAAGATGAAAATCCAAA+AGG | + | chr5.2:71593233-71593252 | None:intergenic | 35.0% | |
| ATATTGAGGATGACACTGTT+AGG | - | chr5.2:71593260-71593279 | MS.gene76118:CDS | 35.0% | |
| ATGGAAACACATAATGGTAG+TGG | - | chr5.2:71592742-71592761 | MS.gene76118:CDS | 35.0% | |
| ATGGAATATCATAGTCCAGA+TGG | - | chr5.2:71593664-71593683 | MS.gene76118:CDS | 35.0% | |
| CAAGATGAAAATCCAAAAGG+GGG | + | chr5.2:71593230-71593249 | None:intergenic | 35.0% | |
| CACTTTGTGGTCTAAACTTA+GGG | - | chr5.2:71592801-71592820 | MS.gene76118:CDS | 35.0% | |
| CCAAGATGAAAATCCAAAAG+GGG | + | chr5.2:71593231-71593250 | None:intergenic | 35.0% | |
| CCTACTTATGACTTCTGTTT+CGG | - | chr5.2:71593376-71593395 | MS.gene76118:CDS | 35.0% | |
| GAACTTATAAGCCTCATGAA+TGG | - | chr5.2:71592723-71592742 | MS.gene76118:CDS | 35.0% | |
| GCCAAGATGAAAATCCAAAA+GGG | + | chr5.2:71593232-71593251 | None:intergenic | 35.0% | |
| TATACAATCCTTAGTCCTCT+AGG | - | chr5.2:71592905-71592924 | MS.gene76118:CDS | 35.0% | |
| TATACATATTCCAACACCGA+TGG | + | chr5.2:71592849-71592868 | None:intergenic | 35.0% | |
| TCTCTTAAGCTATGTGAACT+CGG | + | chr5.2:71592359-71592378 | None:intergenic | 35.0% | |
| TGAGACTGAAATCATTTGAG+AGG | - | chr5.2:71592999-71593018 | MS.gene76118:CDS | 35.0% | |
| TGGAGGAATACTTGACATTT+GGG | - | chr5.2:71593081-71593100 | MS.gene76118:CDS | 35.0% | |
| TTCTGTGATTCCAAAGAAGT+CGG | - | chr5.2:71592541-71592560 | MS.gene76118:CDS | 35.0% | |
| TTGTGCATTTGGTTGGAATA+TGG | - | chr5.2:71593144-71593163 | MS.gene76118:CDS | 35.0% | |
| TTTGCTCAATATGCACTTTG+TGG | - | chr5.2:71592788-71592807 | MS.gene76118:CDS | 35.0% | |
| ! | CATTGAGTGCTATTCCTAAT+AGG | - | chr5.2:71592246-71592265 | MS.gene76118:CDS | 35.0% |
| ! | CGATATCTTTTGGATTCCAT+CGG | + | chr5.2:71592673-71592692 | None:intergenic | 35.0% |
| ! | CTAAGTTTGGCGATATCTTT+TGG | + | chr5.2:71592683-71592702 | None:intergenic | 35.0% |
| ! | GTTTTCAAAGAAACTCGACT+GGG | - | chr5.2:71592394-71592413 | MS.gene76118:CDS | 35.0% |
| ! | TCTTCTTTTACGGAAGATAG+TGG | + | chr5.2:71593691-71593710 | None:intergenic | 35.0% |
| ! | TGTTTTCAAAGAAACTCGAC+TGG | - | chr5.2:71592393-71592412 | MS.gene76118:CDS | 35.0% |
| !! | GTACTTTTTGTGCATTTGGT+TGG | - | chr5.2:71593137-71593156 | MS.gene76118:CDS | 35.0% |
| !!! | TGTTTTTTCGGTATGCTCTA+TGG | - | chr5.2:71593313-71593332 | MS.gene76118:CDS | 35.0% |
| AATATGGAGAGACTTGGCTT+TGG | - | chr5.2:71593160-71593179 | MS.gene76118:CDS | 40.0% | |
| ACTGTTAGGCAATGTCTAGT+AGG | - | chr5.2:71593274-71593293 | MS.gene76118:CDS | 40.0% | |
| ATGGTGACAGATGAAAATCC+TGG | - | chr5.2:71592206-71592225 | MS.gene76118:CDS | 40.0% | |
| CACTTTGGCTATTCTGTTGT+TGG | - | chr5.2:71593422-71593441 | MS.gene76118:CDS | 40.0% | |
| CAGTCGAAAATAGACCAAAG+TGG | - | chr5.2:71593056-71593075 | MS.gene76118:CDS | 40.0% | |
| CCGAAACAGAAGTCATAAGT+AGG | + | chr5.2:71593379-71593398 | None:intergenic | 40.0% | |
| CTAGAACTTAGAGGACTTGA+CGG | + | chr5.2:71593634-71593653 | None:intergenic | 40.0% | |
| CTTGACGGTTTGAAAGTAGA+AGG | + | chr5.2:71593619-71593638 | None:intergenic | 40.0% | |
| CTTGGCTGCTGTTAATATTG+AGG | - | chr5.2:71593246-71593265 | MS.gene76118:CDS | 40.0% | |
| GAAAATAGACCAAAGTGGAG+TGG | - | chr5.2:71593061-71593080 | MS.gene76118:CDS | 40.0% | |
| GCACTTTGTGGTCTAAACTT+AGG | - | chr5.2:71592800-71592819 | MS.gene76118:CDS | 40.0% | |
| GCAGTACTCCTTTCTAAGTT+TGG | + | chr5.2:71592696-71592715 | None:intergenic | 40.0% | |
| GCATAAGATCCACGCAAAAA+GGG | + | chr5.2:71592471-71592490 | None:intergenic | 40.0% | |
| GGAGATTCTCTTTGTATCAC+CGG | + | chr5.2:71593760-71593779 | None:intergenic | 40.0% | |
| GTATATAGACCAGCAATTGC+AGG | + | chr5.2:71592890-71592909 | None:intergenic | 40.0% | |
| GTGGAGGAATACTTGACATT+TGG | - | chr5.2:71593080-71593099 | MS.gene76118:CDS | 40.0% | |
| GTGTGTCATCAACCAAATCT+GGG | - | chr5.2:71593563-71593582 | MS.gene76118:CDS | 40.0% | |
| TCAACATACCAGTCATGACA+AGG | + | chr5.2:71592520-71592539 | None:intergenic | 40.0% | |
| TCTTGCTCAAGAAATGCGAA+CGG | - | chr5.2:71593450-71593469 | MS.gene76118:CDS | 40.0% | |
| ! | CCCCTTTTGGATTTTCATCT+TGG | - | chr5.2:71593228-71593247 | MS.gene76118:CDS | 40.0% |
| ! | GTATGCTCTATGGTGGTTTT+TGG | - | chr5.2:71593323-71593342 | MS.gene76118:CDS | 40.0% |
| ! | TTCAAGTTCTCGAAGAGCAA+TGG | - | chr5.2:71592187-71592206 | MS.gene76118:CDS | 40.0% |
| !! | AGAAAGGAGTACTGCAAGAA+TGG | - | chr5.2:71592701-71592720 | MS.gene76118:CDS | 40.0% |
| !! | ATCTTATGCGTTGCTGTTTC+AGG | - | chr5.2:71592482-71592501 | MS.gene76118:CDS | 40.0% |
| !! | TTTTTCGGTATGCTCTATGG+TGG | - | chr5.2:71593316-71593335 | MS.gene76118:CDS | 40.0% |
| AAGCTATGTGAACTCGGAGA+AGG | + | chr5.2:71592353-71592372 | None:intergenic | 45.0% | |
| AATAGACCAAAGTGGAGTGG+AGG | - | chr5.2:71593064-71593083 | MS.gene76118:CDS | 45.0% | |
| AGGAGAACTTGTCCCAGATT+TGG | + | chr5.2:71593578-71593597 | None:intergenic | 45.0% | |
| AGTATTCCTCCACTCCACTT+TGG | + | chr5.2:71593073-71593092 | None:intergenic | 45.0% | |
| AGTGGCAAGACGCTTGAATT+TGG | + | chr5.2:71592303-71592322 | None:intergenic | 45.0% | |
| ATCCTGTTCCTTGTCATGAC+TGG | - | chr5.2:71592509-71592528 | MS.gene76118:CDS | 45.0% | |
| ATCTTGTACTTCTGTGCCGA+TGG | - | chr5.2:71592654-71592673 | MS.gene76118:CDS | 45.0% | |
| CAAAAAGGGCCATGTTCATC+GGG | + | chr5.2:71592457-71592476 | None:intergenic | 45.0% | |
| CGCATAAGATCCACGCAAAA+AGG | + | chr5.2:71592472-71592491 | None:intergenic | 45.0% | |
| CTTGCTCAAGAAATGCGAAC+GGG | - | chr5.2:71593451-71593470 | MS.gene76118:CDS | 45.0% | |
| GAATAGCACTCAATGTGCTC+GGG | + | chr5.2:71592241-71592260 | None:intergenic | 45.0% | |
| GATTAGGAACCCGATGAACA+TGG | - | chr5.2:71592445-71592464 | MS.gene76118:CDS | 45.0% | |
| GATTCTCTTTGTATCACCGG+CGG | + | chr5.2:71593757-71593776 | None:intergenic | 45.0% | |
| GCAAAAAGGGCCATGTTCAT+CGG | + | chr5.2:71592458-71592477 | None:intergenic | 45.0% | |
| GGAATAGCACTCAATGTGCT+CGG | + | chr5.2:71592242-71592261 | None:intergenic | 45.0% | |
| GGAGGATCCAAATGAGAAAG+AGG | - | chr5.2:71593344-71593363 | MS.gene76118:CDS | 45.0% | |
| GGTGTGTCATCAACCAAATC+TGG | - | chr5.2:71593562-71593581 | MS.gene76118:CDS | 45.0% | |
| GGTTGGAATATGGAGAGACT+TGG | - | chr5.2:71593154-71593173 | MS.gene76118:CDS | 45.0% | |
| GTATAAAAGATCTGAGCGCC+CGG | - | chr5.2:71592823-71592842 | MS.gene76118:CDS | 45.0% | |
| TACCAGTCATGACAAGGAAC+AGG | + | chr5.2:71592514-71592533 | None:intergenic | 45.0% | |
| TGATTCCAAAGAAGTCGGCA+AGG | - | chr5.2:71592546-71592565 | MS.gene76118:CDS | 45.0% | |
| TTGCTCAAGAAATGCGAACG+GGG | - | chr5.2:71593452-71593471 | MS.gene76118:CDS | 45.0% | |
| ! | ATCGGCACAGAAGTACAAGA+TGG | + | chr5.2:71592655-71592674 | None:intergenic | 45.0% |
| ! | TTTTCTGTATGGCCCCCTTT+TGG | - | chr5.2:71593215-71593234 | MS.gene76118:CDS | 45.0% |
| !! | TGCTCTATGGTGGTTTTTGG+AGG | - | chr5.2:71593326-71593345 | MS.gene76118:CDS | 45.0% |
| !! | TTATGCGTTGCTGTTTCAGG+TGG | - | chr5.2:71592485-71592504 | MS.gene76118:CDS | 45.0% |
| AAGGCACAGATTGTGAAGCC+TGG | + | chr5.2:71592334-71592353 | None:intergenic | 50.0% | |
| AATGATTCCACCAACTCCGC+CGG | - | chr5.2:71593738-71593757 | MS.gene76118:CDS | 50.0% | |
| AGAAGTCGGCAAGGAATGCA+TGG | - | chr5.2:71592555-71592574 | MS.gene76118:CDS | 50.0% | |
| AGGCAATGTCTAGTAGGTGC+TGG | - | chr5.2:71593280-71593299 | MS.gene76118:CDS | 50.0% | |
| ATATTCCAACACCGATGGCC+GGG | + | chr5.2:71592844-71592863 | None:intergenic | 50.0% | |
| CATATTCCAACACCGATGGC+CGG | + | chr5.2:71592845-71592864 | None:intergenic | 50.0% | |
| GGCAATGTCTAGTAGGTGCT+GGG | - | chr5.2:71593281-71593300 | MS.gene76118:CDS | 50.0% | |
| TGCTCAAGAAATGCGAACGG+GGG | - | chr5.2:71593453-71593472 | MS.gene76118:CDS | 50.0% | |
| TGGATCGGACGAAGAATCAC+AGG | - | chr5.2:71592943-71592962 | MS.gene76118:CDS | 50.0% | |
| ! | TCTGGGACAAGTTCTCCTCT+TGG | - | chr5.2:71593580-71593599 | MS.gene76118:CDS | 50.0% |
| ! | TGAACATGGCCCTTTTTGCG+TGG | - | chr5.2:71592459-71592478 | MS.gene76118:CDS | 50.0% |
| !! | ACGGAAGATAGTGGACCATC+TGG | + | chr5.2:71593682-71593701 | None:intergenic | 50.0% |
| !! | GCATTCCTTGCCGACTTCTT+TGG | + | chr5.2:71592554-71592573 | None:intergenic | 50.0% |
| ATCGGTGCACCTGCAATTGC+TGG | - | chr5.2:71592878-71592897 | MS.gene76118:CDS | 55.0% | |
| ATTTCACCTCTGCGTCGCGA+AGG | - | chr5.2:71593541-71593560 | MS.gene76118:CDS | 55.0% | |
| CAAGCGTCTTGCCACTCAGA+TGG | - | chr5.2:71592307-71592326 | MS.gene76118:CDS | 55.0% | |
| CGGTTTCGGACTGCACACTT+TGG | - | chr5.2:71593407-71593426 | MS.gene76118:CDS | 55.0% | |
| CTTCTGTTTCGGCAAGCCTG+CGG | - | chr5.2:71593387-71593406 | MS.gene76118:CDS | 55.0% | |
| CTTTGTATCACCGGCGGAGT+TGG | + | chr5.2:71593751-71593770 | None:intergenic | 55.0% | |
| GTGCTCGGGAACTTTCTACC+AGG | + | chr5.2:71592227-71592246 | None:intergenic | 55.0% | |
| TCGCGACGCAGAGGTGAAAT+CGG | + | chr5.2:71593541-71593560 | None:intergenic | 55.0% | |
| TCTTGCCACTCAGATGGACC+AGG | - | chr5.2:71592313-71592332 | MS.gene76118:CDS | 55.0% | |
| TGAAGCCTGGTCCATCTGAG+TGG | + | chr5.2:71592321-71592340 | None:intergenic | 55.0% | |
| TTTCGGCAAGCCTGCGGTTT+CGG | - | chr5.2:71593393-71593412 | MS.gene76118:CDS | 55.0% | |
| ! | GGAGACGAGTTGACACCAAG+AGG | + | chr5.2:71593598-71593617 | None:intergenic | 55.0% |
| AGTGTGCAGTCCGAAACCGC+AGG | + | chr5.2:71593406-71593425 | None:intergenic | 60.0% | |
| CGACGCAGAGGTGAAATCGG+CGG | + | chr5.2:71593538-71593557 | None:intergenic | 60.0% | |
| GCAGAGGTGAAATCGGCGGT+TGG | + | chr5.2:71593534-71593553 | None:intergenic | 60.0% | |
| TGTATCACCGGCGGAGTTGG+TGG | + | chr5.2:71593748-71593767 | None:intergenic | 60.0% | |
| AGATCTGAGCGCCCGGCCAT+CGG | - | chr5.2:71592830-71592849 | MS.gene76118:CDS | 65.0% | |
| GACACACCTTCGCGACGCAG+AGG | + | chr5.2:71593550-71593569 | None:intergenic | 65.0% | |
| GAGCGCCCGGCCATCGGTGT+TGG | - | chr5.2:71592836-71592855 | MS.gene76118:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 71592098 | 71593783 | 71592098 | ID=MS.gene76118 |
| chr5.2 | mRNA | 71592098 | 71593783 | 71592098 | ID=MS.gene76118.t1;Parent=MS.gene76118 |
| chr5.2 | exon | 71592098 | 71593783 | 71592098 | ID=MS.gene76118.t1.exon1;Parent=MS.gene76118.t1 |
| chr5.2 | CDS | 71592098 | 71593783 | 71592098 | ID=cds.MS.gene76118.t1;Parent=MS.gene76118.t1 |
| Gene Sequence |
| Protein sequence |
