Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76153.t1 | XP_003597581.1 | 90.8 | 229 | 21 | 0 | 1 | 229 | 1 | 229 | 1.70E-118 | 435.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76153.t1 | G7IS52 | 90.8 | 229 | 21 | 0 | 1 | 229 | 1 | 229 | 1.2e-118 | 435.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050026 | MS.gene76153 | 0.830565 | 2.73E-55 | -1.69E-46 |
| MS.gene051279 | MS.gene76153 | 0.820423 | 6.91E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene76153 | 0.805355 | 1.39E-49 | -1.69E-46 |
| MS.gene051957 | MS.gene76153 | 0.826483 | 2.65E-54 | -1.69E-46 |
| MS.gene052208 | MS.gene76153 | 0.817347 | 3.46E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene76153 | 0.8048 | 1.82E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene76153 | 0.815049 | 1.13E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene76153 | 0.809054 | 2.29E-50 | -1.69E-46 |
| MS.gene052616 | MS.gene76153 | 0.811986 | 5.32E-51 | -1.69E-46 |
| MS.gene052867 | MS.gene76153 | 0.804974 | 1.67E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene76153 | 0.803393 | 3.56E-49 | -1.69E-46 |
| MS.gene053974 | MS.gene76153 | 0.805651 | 1.20E-49 | -1.69E-46 |
| MS.gene053998 | MS.gene76153 | 0.801206 | 1.00E-48 | -1.69E-46 |
| MS.gene05415 | MS.gene76153 | 0.800912 | 1.15E-48 | -1.69E-46 |
| MS.gene054236 | MS.gene76153 | 0.801024 | 1.09E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene76153 | 0.802222 | 6.21E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene76153 | 0.805515 | 1.29E-49 | -1.69E-46 |
| MS.gene05531 | MS.gene76153 | 0.822699 | 2.06E-53 | -1.69E-46 |
| MS.gene055778 | MS.gene76153 | 0.818095 | 2.34E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene76153 | 0.80343 | 3.50E-49 | -1.69E-46 |
| MS.gene05690 | MS.gene76153 | 0.817096 | 3.94E-52 | -1.69E-46 |
| MS.gene057444 | MS.gene76153 | 0.818564 | 1.84E-52 | -1.69E-46 |
| MS.gene058037 | MS.gene76153 | 0.816817 | 4.55E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene76153 | 0.820612 | 6.26E-53 | -1.69E-46 |
| MS.gene058979 | MS.gene76153 | 0.812083 | 5.07E-51 | -1.69E-46 |
| MS.gene059272 | MS.gene76153 | 0.829735 | 4.36E-55 | -1.69E-46 |
| MS.gene059584 | MS.gene76153 | 0.811202 | 7.88E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene76153 | 0.827207 | 1.78E-54 | -1.69E-46 |
| MS.gene060310 | MS.gene76153 | 0.805755 | 1.15E-49 | -1.69E-46 |
| MS.gene060521 | MS.gene76153 | 0.807021 | 6.19E-50 | -1.69E-46 |
| MS.gene061091 | MS.gene76153 | 0.804935 | 1.70E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76153.t1 | MTR_2g099820 | 83.774 | 265 | 31 | 1 | 1 | 253 | 1 | 265 | 1.34e-150 | 423 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76153.t1 | AT3G13780 | 40.602 | 266 | 145 | 5 | 1 | 253 | 14 | 279 | 6.53e-54 | 177 |
Find 72 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACAAATTGATCCTGTTAG+AGG | 0.319279 | 2.3:+3900738 | MS.gene76153:CDS |
| TGATCCGGAATGTGGAGAAT+TGG | 0.345241 | 2.3:+3902191 | MS.gene76153:CDS |
| GAAATTCGAAATGGGTCATC+TGG | 0.368369 | 2.3:+3900611 | MS.gene76153:CDS |
| GATCTTCAAGAAATTCGAAA+TGG | 0.376754 | 2.3:+3900602 | MS.gene76153:CDS |
| TCATCCTCACTTTCTTTGCT+AGG | 0.386031 | 2.3:-3902232 | None:intergenic |
| GGATCATGCCCTTTGGATAC+TGG | 0.392754 | 2.3:-3902174 | None:intergenic |
| GTATCTTTGATATCTCTCTT+AGG | 0.392852 | 2.3:-3902421 | None:intergenic |
| TGTCTGTGAAAACACCCTTT+TGG | 0.396143 | 2.3:+3900655 | MS.gene76153:CDS |
| TCAAAGTTATTACCTCTAAC+AGG | 0.402555 | 2.3:-3900750 | None:intergenic |
| AAGGAACTTGTTGCTAAGGT+TGG | 0.407977 | 2.3:+3902349 | MS.gene76153:CDS |
| GATCCGGAATGTGGAGAATT+GGG | 0.436535 | 2.3:+3902192 | MS.gene76153:CDS |
| AGGAACTTGTTGCTAAGGTT+GGG | 0.441377 | 2.3:+3902350 | MS.gene76153:CDS |
| ACATTCCGGATCATGCCCTT+TGG | 0.441791 | 2.3:-3902181 | None:intergenic |
| AGGTTTCATTTCAAGTCGTT+GGG | 0.451069 | 2.3:+3900535 | MS.gene76153:CDS |
| TGAGGATAAAAGGAAAATGA+AGG | 0.453909 | 2.3:+3902264 | MS.gene76153:CDS |
| TGAGGAGGAGGAAGAGGAGG+AGG | 0.454700 | 2.3:+3902555 | MS.gene76153:CDS |
| AAGGTTTCATTTCAAGTCGT+TGG | 0.458103 | 2.3:+3900534 | MS.gene76153:CDS |
| CCTCTTCAAATTGAACCAAA+AGG | 0.462476 | 2.3:-3900670 | None:intergenic |
| ACACTGTTCGGACGAGGTTG+CGG | 0.462850 | 2.3:+3900432 | MS.gene76153:CDS |
| TGACGATGAGGAGGAGGAAG+AGG | 0.469148 | 2.3:+3902549 | MS.gene76153:CDS |
| TCGTTGGGAGAAACCCCATC+TGG | 0.475641 | 2.3:+3900550 | MS.gene76153:CDS |
| TGGTGATAGTGAAGATGATA+AGG | 0.481772 | 2.3:+3902330 | MS.gene76153:CDS |
| CTCTTCAAATTGAACCAAAA+GGG | 0.482178 | 2.3:-3900669 | None:intergenic |
| AATCAGACTCGTTGTTGAGT+TGG | 0.499196 | 2.3:-3900500 | None:intergenic |
| TGATAAGGAACTTGTTGCTA+AGG | 0.499728 | 2.3:+3902345 | MS.gene76153:CDS |
| TTGTTCTTCAAAACCCAGAT+GGG | 0.501960 | 2.3:-3900564 | None:intergenic |
| GCAAGGTCTAAAGAAAATAG+AGG | 0.503160 | 2.3:+3902397 | MS.gene76153:CDS |
| GATGACGAGGATGCTGTGGC+GGG | 0.505221 | 2.3:+3902595 | MS.gene76153:CDS |
| TAGCAAAGAAAGTGAGGATG+AGG | 0.513147 | 2.3:+3902234 | MS.gene76153:CDS |
| ACGACTTGAAATGAAACCTT+AGG | 0.513835 | 2.3:-3900531 | None:intergenic |
| AACAGCGATAAAACACTGTT+CGG | 0.515120 | 2.3:+3900420 | MS.gene76153:CDS |
| ATCTTCAAGAAATTCGAAAT+GGG | 0.522415 | 2.3:+3900603 | MS.gene76153:CDS |
| ACTCCCAATTCTCCACATTC+CGG | 0.528495 | 2.3:-3902195 | None:intergenic |
| AGTATCCAAAGGGCATGATC+CGG | 0.532093 | 2.3:+3902176 | MS.gene76153:CDS |
| TGAAGAGGAAGAAGATGACG+AGG | 0.532132 | 2.3:+3902582 | MS.gene76153:CDS |
| ATGGAGTTCGAAGGCGAAGA+TGG | 0.533843 | 2.3:+3900378 | MS.gene76153:CDS |
| CGATGAGGAGGAGGAAGAGG+AGG | 0.534580 | 2.3:+3902552 | MS.gene76153:CDS |
| GTCTGATTCAGAGCCTCCTA+AGG | 0.535965 | 2.3:+3900515 | MS.gene76153:CDS |
| GAGGATAAAAGGAAAATGAA+GGG | 0.536300 | 2.3:+3902265 | MS.gene76153:CDS |
| TGATGAAGAAGATGAGGATG+AGG | 0.536649 | 2.3:+3902516 | MS.gene76153:CDS |
| AGAGGAGGAGGAGTTTGAAG+AGG | 0.542676 | 2.3:+3902567 | MS.gene76153:CDS |
| TTAGACCTTGCGGAGTACCT+AGG | 0.545892 | 2.3:-3902385 | None:intergenic |
| AGATGACGAGGATGCTGTGG+CGG | 0.565850 | 2.3:+3902594 | MS.gene76153:CDS |
| AAACAATGACGATGAGGAGG+AGG | 0.568312 | 2.3:+3902543 | MS.gene76153:CDS |
| ATTGTTCTTCAAAACCCAGA+TGG | 0.569608 | 2.3:-3900565 | None:intergenic |
| CGTTGGGAGAAACCCCATCT+GGG | 0.574231 | 2.3:+3900551 | MS.gene76153:CDS |
| TTGGGAAAGGTAAGAAACCT+AGG | 0.574841 | 2.3:+3902368 | MS.gene76153:CDS |
| AACAAAGATGACGAGTGGAC+TGG | 0.577011 | 2.3:+3902310 | MS.gene76153:CDS |
| CTTGTTGCTAAGGTTGGGAA+AGG | 0.577595 | 2.3:+3902355 | MS.gene76153:CDS |
| GATAAAACACTGTTCGGACG+AGG | 0.578913 | 2.3:+3900426 | MS.gene76153:CDS |
| GAGTTTGACCAGTATCCAAA+GGG | 0.590357 | 2.3:+3902166 | MS.gene76153:CDS |
| AAAGGGCATGATCCGGAATG+TGG | 0.603271 | 2.3:+3902183 | MS.gene76153:CDS |
| AGAAGATGACGAGGATGCTG+TGG | 0.607746 | 2.3:+3902591 | MS.gene76153:CDS |
| GAAATGGGTCATCTGGAACT+CGG | 0.619115 | 2.3:+3900618 | MS.gene76153:CDS |
| TGAGTTTGACCAGTATCCAA+AGG | 0.622122 | 2.3:+3902165 | MS.gene76153:CDS |
| GATGATGATGAGACGCTAGG+AGG | 0.630052 | 2.3:+3902481 | MS.gene76153:CDS |
| ACTTGAAATGAAACCTTAGG+AGG | 0.632408 | 2.3:-3900528 | None:intergenic |
| TGTTCTTCAAAACCCAGATG+GGG | 0.634603 | 2.3:-3900563 | None:intergenic |
| GGAGCCTAGCAAAGAAAGTG+AGG | 0.635527 | 2.3:+3902228 | MS.gene76153:CDS |
| GAGACAACAAAGATGACGAG+TGG | 0.639451 | 2.3:+3902305 | MS.gene76153:CDS |
| GAATTGGGAGTGGTTTCTCG+AGG | 0.640949 | 2.3:+3902207 | MS.gene76153:CDS |
| TAATTCTGAATGGAGTTCGA+AGG | 0.641013 | 2.3:+3900369 | None:intergenic |
| GGAATGTGGAGAATTGGGAG+TGG | 0.641413 | 2.3:+3902197 | MS.gene76153:CDS |
| AGGATAAAAGGAAAATGAAG+GGG | 0.646152 | 2.3:+3902266 | MS.gene76153:CDS |
| TGTTACTGATGAAGAAGATG+AGG | 0.658205 | 2.3:+3902510 | MS.gene76153:CDS |
| GACGATGATGATGAGACGCT+AGG | 0.666439 | 2.3:+3902478 | MS.gene76153:CDS |
| ACAAAACAATGACGATGAGG+AGG | 0.667862 | 2.3:+3902540 | MS.gene76153:CDS |
| ATGACGAGGATGCTGTGGCG+GGG | 0.679104 | 2.3:+3902596 | MS.gene76153:CDS |
| AGATATCAAAGATACTAGTG+TGG | 0.683203 | 2.3:+3902429 | MS.gene76153:CDS |
| AGAAACCTAGGTACTCCGCA+AGG | 0.683889 | 2.3:+3902380 | MS.gene76153:CDS |
| GGAACAAAACAATGACGATG+AGG | 0.691982 | 2.3:+3902537 | MS.gene76153:CDS |
| CGTGATGACGAGAAACAGTG+TGG | 0.730657 | 2.3:-3900470 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATATATTATAGAAGA+AGG | - | chr2.3:3901498-3901517 | None:intergenic | 10.0% |
| !! | TTAAATTCATATTCAATATA+AGG | + | chr2.3:3901462-3901481 | MS.gene76153:intron | 10.0% |
| !! | AAAAATTATTTCCATCAAAA+AGG | - | chr2.3:3900777-3900796 | None:intergenic | 15.0% |
| !! | AAAATTATTTCCATCAAAAA+GGG | - | chr2.3:3900776-3900795 | None:intergenic | 15.0% |
| !! | AATTCCAATATTATTATGTA+TGG | + | chr2.3:3901549-3901568 | MS.gene76153:intron | 15.0% |
| !! | AGAATTATAATATCCTTAAA+AGG | - | chr2.3:3901056-3901075 | None:intergenic | 15.0% |
| !! | ATTCCAATATTATTATGTAT+GGG | + | chr2.3:3901550-3901569 | MS.gene76153:intron | 15.0% |
| !! | CTTATATATAAGCATTTATA+TGG | + | chr2.3:3901285-3901304 | MS.gene76153:intron | 15.0% |
| !! | TAAGGATATTATAATTCTAA+GGG | + | chr2.3:3901058-3901077 | MS.gene76153:intron | 15.0% |
| !! | TTAAGGATATTATAATTCTA+AGG | + | chr2.3:3901057-3901076 | MS.gene76153:intron | 15.0% |
| !!! | CTTTCAATTTTATTTTTTCT+TGG | + | chr2.3:3901589-3901608 | MS.gene76153:intron | 15.0% |
| !!! | GTTTTTAACTTATTTCAATA+AGG | + | chr2.3:3901180-3901199 | MS.gene76153:intron | 15.0% |
| !!! | TTATCTTTTGTTATAGAAAA+TGG | + | chr2.3:3901262-3901281 | MS.gene76153:intron | 15.0% |
| !! | ATAAGTTAAAAACAAACTCA+TGG | - | chr2.3:3901173-3901192 | None:intergenic | 20.0% |
| !! | GTTGTAACAAAATCAATAAT+TGG | + | chr2.3:3900848-3900867 | MS.gene76153:intron | 20.0% |
| !! | TTCATATTCAATATAAGGTA+AGG | + | chr2.3:3901467-3901486 | MS.gene76153:intron | 20.0% |
| !!! | AATTTTGAAAATGCAGATTT+TGG | + | chr2.3:3902124-3902143 | MS.gene76153:intron | 20.0% |
| ! | AAAACAAATTCATGCGTAAA+TGG | - | chr2.3:3902059-3902078 | None:intergenic | 25.0% |
| ! | AACTCGAATATTACCTATAA+TGG | + | chr2.3:3901665-3901684 | MS.gene76153:intron | 25.0% |
| ! | AATCTCACAGTTTATAATGA+TGG | - | chr2.3:3901114-3901133 | None:intergenic | 25.0% |
| ! | ACTCGAATATTACCTATAAT+GGG | + | chr2.3:3901666-3901685 | MS.gene76153:intron | 25.0% |
| ! | ATCTTCAAGAAATTCGAAAT+GGG | + | chr2.3:3900603-3900622 | MS.gene76153:CDS | 25.0% |
| ! | GATCCCATACATAATAATAT+TGG | - | chr2.3:3901556-3901575 | None:intergenic | 25.0% |
| ! | TAAGTTGTTTATCCAAAACA+TGG | + | chr2.3:3901335-3901354 | MS.gene76153:intron | 25.0% |
| !! | AATTCACAATGATAGCTTTT+AGG | + | chr2.3:3902082-3902101 | MS.gene76153:intron | 25.0% |
| !! | CTTCATTCCTTTTGTAAATT+TGG | + | chr2.3:3901614-3901633 | MS.gene76153:intron | 25.0% |
| !! | TATAAACTGTGAGATTGTTT+TGG | + | chr2.3:3901118-3901137 | MS.gene76153:intron | 25.0% |
| !!! | AAAAAGTGTTGAACTTTTCT+GGG | + | chr2.3:3901737-3901756 | MS.gene76153:intron | 25.0% |
| !!! | ATAATTCTAAGGGTCTTTTT+TGG | + | chr2.3:3901068-3901087 | MS.gene76153:intron | 25.0% |
| !!! | ATTTTGGTTTTCTTGTTATG+AGG | + | chr2.3:3902140-3902159 | MS.gene76153:CDS | 25.0% |
| !!! | TAAAAAGTGTTGAACTTTTC+TGG | + | chr2.3:3901736-3901755 | MS.gene76153:intron | 25.0% |
| !!! | TTTGAGAGTTTGTTTTGTAT+TGG | + | chr2.3:3900996-3901015 | MS.gene76153:intron | 25.0% |
| AATCGAAATGAAATGGTTGA+TGG | + | chr2.3:3901766-3901785 | MS.gene76153:intron | 30.0% | |
| ACCATAAACTATAGTACTCA+TGG | - | chr2.3:3901377-3901396 | None:intergenic | 30.0% | |
| ACCATGAGTACTATAGTTTA+TGG | + | chr2.3:3901373-3901392 | MS.gene76153:intron | 30.0% | |
| ACGAAGAATAATCCCATTAT+AGG | - | chr2.3:3901681-3901700 | None:intergenic | 30.0% | |
| ACTTGAAAATCTCTTTCTCA+AGG | - | chr2.3:3901826-3901845 | None:intergenic | 30.0% | |
| AGATATCAAAGATACTAGTG+TGG | + | chr2.3:3902429-3902448 | MS.gene76153:CDS | 30.0% | |
| AGGATAAAAGGAAAATGAAG+GGG | + | chr2.3:3902266-3902285 | MS.gene76153:CDS | 30.0% | |
| CATGCAACCAAATTTACAAA+AGG | - | chr2.3:3901624-3901643 | None:intergenic | 30.0% | |
| CTCATGGTTGAATTAGATTT+AGG | - | chr2.3:3901361-3901380 | None:intergenic | 30.0% | |
| CTCTTCAAATTGAACCAAAA+GGG | - | chr2.3:3900672-3900691 | None:intergenic | 30.0% | |
| GAAGTTATGAAAACACTTCA+AGG | + | chr2.3:3901142-3901161 | MS.gene76153:intron | 30.0% | |
| GAATTTGTAACCAACTAAAG+AGG | - | chr2.3:3901534-3901553 | None:intergenic | 30.0% | |
| GAGGATAAAAGGAAAATGAA+GGG | + | chr2.3:3902265-3902284 | MS.gene76153:CDS | 30.0% | |
| GATCTTCAAGAAATTCGAAA+TGG | + | chr2.3:3900602-3900621 | MS.gene76153:CDS | 30.0% | |
| GGTTAGAAATCGAAATGAAA+TGG | + | chr2.3:3901759-3901778 | MS.gene76153:intron | 30.0% | |
| GTATCTTTGATATCTCTCTT+AGG | - | chr2.3:3902424-3902443 | None:intergenic | 30.0% | |
| TCAAAGTTATTACCTCTAAC+AGG | - | chr2.3:3900753-3900772 | None:intergenic | 30.0% | |
| TGAATTATACTACCCTTAGA+AGG | - | chr2.3:3901997-3902016 | None:intergenic | 30.0% | |
| TGAGGATAAAAGGAAAATGA+AGG | + | chr2.3:3902264-3902283 | MS.gene76153:CDS | 30.0% | |
| ! | ATAACTTTGACCCTTTTTGA+TGG | + | chr2.3:3900763-3900782 | MS.gene76153:intron | 30.0% |
| ! | ATTAGATTTAGGCCATGTTT+TGG | - | chr2.3:3901350-3901369 | None:intergenic | 30.0% |
| ! | CTTTTGTAAATTTGGTTGCA+TGG | + | chr2.3:3901622-3901641 | MS.gene76153:intron | 30.0% |
| ! | TATATTTGTGCAGCCTTTTA+AGG | + | chr2.3:3901040-3901059 | MS.gene76153:intron | 30.0% |
| ! | TCTATTTTCTTTAGACCTTG+CGG | - | chr2.3:3902398-3902417 | None:intergenic | 30.0% |
| ! | TTTTCACAGACAAGCAAAAT+CGG | - | chr2.3:3900647-3900666 | None:intergenic | 30.0% |
| !! | AGGATGATTTTGAGGATAAA+AGG | + | chr2.3:3902254-3902273 | MS.gene76153:CDS | 30.0% |
| !! | GCTGTTTTGTAAAGAGAATT+TGG | - | chr2.3:3900406-3900425 | None:intergenic | 30.0% |
| !!! | AAAAGTGTTGAACTTTTCTG+GGG | + | chr2.3:3901738-3901757 | MS.gene76153:intron | 30.0% |
| AACAGCGATAAAACACTGTT+CGG | + | chr2.3:3900420-3900439 | MS.gene76153:CDS | 35.0% | |
| ACGACTTGAAATGAAACCTT+AGG | - | chr2.3:3900534-3900553 | None:intergenic | 35.0% | |
| ACTTGAAATGAAACCTTAGG+AGG | - | chr2.3:3900531-3900550 | None:intergenic | 35.0% | |
| ATTGTTCTTCAAAACCCAGA+TGG | - | chr2.3:3900568-3900587 | None:intergenic | 35.0% | |
| CCTCTTCAAATTGAACCAAA+AGG | - | chr2.3:3900673-3900692 | None:intergenic | 35.0% | |
| CTTATTTCAATAAGGTCTCC+AGG | + | chr2.3:3901188-3901207 | MS.gene76153:intron | 35.0% | |
| GATAGCTTAATAGCGTTCTA+AGG | + | chr2.3:3901428-3901447 | MS.gene76153:intron | 35.0% | |
| GCAAGGTCTAAAGAAAATAG+AGG | + | chr2.3:3902397-3902416 | MS.gene76153:CDS | 35.0% | |
| TCACAAATTGATCCTGTTAG+AGG | + | chr2.3:3900738-3900757 | MS.gene76153:CDS | 35.0% | |
| TGCTGAATTCATGTCAACAA+TGG | + | chr2.3:3901863-3901882 | MS.gene76153:intron | 35.0% | |
| TGTTACTGATGAAGAAGATG+AGG | + | chr2.3:3902510-3902529 | MS.gene76153:CDS | 35.0% | |
| TTATATCTTGTAAGTGCCTG+TGG | + | chr2.3:3901963-3901982 | MS.gene76153:intron | 35.0% | |
| TTGTTCTTCAAAACCCAGAT+GGG | - | chr2.3:3900567-3900586 | None:intergenic | 35.0% | |
| ! | AAGGTTTCATTTCAAGTCGT+TGG | + | chr2.3:3900534-3900553 | MS.gene76153:CDS | 35.0% |
| ! | AGGTTTCATTTCAAGTCGTT+GGG | + | chr2.3:3900535-3900554 | MS.gene76153:CDS | 35.0% |
| ! | GGATATGAGTTGCAAGTTTT+AGG | + | chr2.3:3901017-3901036 | MS.gene76153:intron | 35.0% |
| ! | TGGTGATAGTGAAGATGATA+AGG | + | chr2.3:3902330-3902349 | MS.gene76153:CDS | 35.0% |
| !! | TGATAAGGAACTTGTTGCTA+AGG | + | chr2.3:3902345-3902364 | MS.gene76153:CDS | 35.0% |
| !! | TGTTTTTCGAACTTGAGTGT+GGG | + | chr2.3:3901713-3901732 | MS.gene76153:intron | 35.0% |
| !! | TTGTTTTTCGAACTTGAGTG+TGG | + | chr2.3:3901712-3901731 | MS.gene76153:intron | 35.0% |
| !!! | AAAAACGAGCTTTTTTCGTG+AGG | - | chr2.3:3901803-3901822 | None:intergenic | 35.0% |
| !!! | CCTTTTGGTTCAATTTGAAG+AGG | + | chr2.3:3900670-3900689 | MS.gene76153:CDS | 35.0% |
| AACCAACTAAAGAGGAAAGC+AGG | - | chr2.3:3901526-3901545 | None:intergenic | 40.0% | |
| AATCAGACTCGTTGTTGAGT+TGG | - | chr2.3:3900503-3900522 | None:intergenic | 40.0% | |
| ACAAAACAATGACGATGAGG+AGG | + | chr2.3:3902540-3902559 | MS.gene76153:CDS | 40.0% | |
| CTACATTGCAAATCCTGCTA+AGG | - | chr2.3:3900949-3900968 | None:intergenic | 40.0% | |
| GAAATTCGAAATGGGTCATC+TGG | + | chr2.3:3900611-3900630 | MS.gene76153:CDS | 40.0% | |
| GAGTTTGACCAGTATCCAAA+GGG | + | chr2.3:3902166-3902185 | MS.gene76153:CDS | 40.0% | |
| GGAACAAAACAATGACGATG+AGG | + | chr2.3:3902537-3902556 | MS.gene76153:CDS | 40.0% | |
| GTCAATGACATTTCCTTAGC+AGG | + | chr2.3:3900933-3900952 | MS.gene76153:intron | 40.0% | |
| GTTTAGCGTTGTTCACTTGA+TGG | + | chr2.3:3902022-3902041 | MS.gene76153:intron | 40.0% | |
| TAGCAAAGAAAGTGAGGATG+AGG | + | chr2.3:3902234-3902253 | MS.gene76153:CDS | 40.0% | |
| TCATCCTCACTTTCTTTGCT+AGG | - | chr2.3:3902235-3902254 | None:intergenic | 40.0% | |
| TGAGTTTGACCAGTATCCAA+AGG | + | chr2.3:3902165-3902184 | MS.gene76153:CDS | 40.0% | |
| TGATGAAGAAGATGAGGATG+AGG | + | chr2.3:3902516-3902535 | MS.gene76153:CDS | 40.0% | |
| TGTTCTTCAAAACCCAGATG+GGG | - | chr2.3:3900566-3900585 | None:intergenic | 40.0% | |
| TTGGGAAAGGTAAGAAACCT+AGG | + | chr2.3:3902368-3902387 | MS.gene76153:CDS | 40.0% | |
| ! | TGAGGATGAGGATGATTTTG+AGG | + | chr2.3:3902246-3902265 | MS.gene76153:CDS | 40.0% |
| ! | TGTCTGTGAAAACACCCTTT+TGG | + | chr2.3:3900655-3900674 | MS.gene76153:CDS | 40.0% |
| !! | AAGGAACTTGTTGCTAAGGT+TGG | + | chr2.3:3902349-3902368 | MS.gene76153:CDS | 40.0% |
| !! | AGGAACTTGTTGCTAAGGTT+GGG | + | chr2.3:3902350-3902369 | MS.gene76153:CDS | 40.0% |
| !! | GCTATTTTCACAAGCTATCC+TGG | - | chr2.3:3901209-3901228 | None:intergenic | 40.0% |
| AAACAATGACGATGAGGAGG+AGG | + | chr2.3:3902543-3902562 | MS.gene76153:CDS | 45.0% | |
| AACAAAGATGACGAGTGGAC+TGG | + | chr2.3:3902310-3902329 | MS.gene76153:CDS | 45.0% | |
| ACTCCCAATTCTCCACATTC+CGG | - | chr2.3:3902198-3902217 | None:intergenic | 45.0% | |
| CAACTAAAGAGGAAAGCAGG+AGG | - | chr2.3:3901523-3901542 | None:intergenic | 45.0% | |
| CTCCTGCTTTCCTCTTTAGT+TGG | + | chr2.3:3901521-3901540 | MS.gene76153:intron | 45.0% | |
| CTTGTTGCTAAGGTTGGGAA+AGG | + | chr2.3:3902355-3902374 | MS.gene76153:CDS | 45.0% | |
| GAGACAACAAAGATGACGAG+TGG | + | chr2.3:3902305-3902324 | MS.gene76153:CDS | 45.0% | |
| GATAAAACACTGTTCGGACG+AGG | + | chr2.3:3900426-3900445 | MS.gene76153:CDS | 45.0% | |
| GATCCGGAATGTGGAGAATT+GGG | + | chr2.3:3902192-3902211 | MS.gene76153:CDS | 45.0% | |
| TGAAGAGGAAGAAGATGACG+AGG | + | chr2.3:3902582-3902601 | MS.gene76153:CDS | 45.0% | |
| TGATCCGGAATGTGGAGAAT+TGG | + | chr2.3:3902191-3902210 | MS.gene76153:CDS | 45.0% | |
| ! | AGTATCCAAAGGGCATGATC+CGG | + | chr2.3:3902176-3902195 | MS.gene76153:CDS | 45.0% |
| ! | GAAATGGGTCATCTGGAACT+CGG | + | chr2.3:3900618-3900637 | MS.gene76153:CDS | 45.0% |
| !!! | ATCATTTAAAATATAATTTT+TGG | + | chr2.3:3901917-3901936 | MS.gene76153:intron | 5.0% |
| ACATTCCGGATCATGCCCTT+TGG | - | chr2.3:3902184-3902203 | None:intergenic | 50.0% | |
| AGAAACCTAGGTACTCCGCA+AGG | + | chr2.3:3902380-3902399 | MS.gene76153:CDS | 50.0% | |
| AGAAGATGACGAGGATGCTG+TGG | + | chr2.3:3902591-3902610 | MS.gene76153:CDS | 50.0% | |
| AGAGGAGGAGGAGTTTGAAG+AGG | + | chr2.3:3902567-3902586 | MS.gene76153:CDS | 50.0% | |
| ATGGAGTTCGAAGGCGAAGA+TGG | + | chr2.3:3900378-3900397 | MS.gene76153:CDS | 50.0% | |
| GAATTGGGAGTGGTTTCTCG+AGG | + | chr2.3:3902207-3902226 | MS.gene76153:CDS | 50.0% | |
| GGAATGTGGAGAATTGGGAG+TGG | + | chr2.3:3902197-3902216 | MS.gene76153:CDS | 50.0% | |
| GGAGCCTAGCAAAGAAAGTG+AGG | + | chr2.3:3902228-3902247 | MS.gene76153:CDS | 50.0% | |
| GGATCATGCCCTTTGGATAC+TGG | - | chr2.3:3902177-3902196 | None:intergenic | 50.0% | |
| GTCTGATTCAGAGCCTCCTA+AGG | + | chr2.3:3900515-3900534 | MS.gene76153:CDS | 50.0% | |
| GTGGCTGTGTAGCCTTCTAA+GGG | + | chr2.3:3901982-3902001 | MS.gene76153:intron | 50.0% | |
| TGTGGCTGTGTAGCCTTCTA+AGG | + | chr2.3:3901981-3902000 | MS.gene76153:intron | 50.0% | |
| TTAGAAGGCTACACAGCCAC+AGG | - | chr2.3:3901982-3902001 | None:intergenic | 50.0% | |
| ! | AAAGGGCATGATCCGGAATG+TGG | + | chr2.3:3902183-3902202 | MS.gene76153:CDS | 50.0% |
| ! | CGTGATGACGAGAAACAGTG+TGG | - | chr2.3:3900473-3900492 | None:intergenic | 50.0% |
| ! | GACGATGATGATGAGACGCT+AGG | + | chr2.3:3902478-3902497 | MS.gene76153:CDS | 50.0% |
| ! | GATGATGATGAGACGCTAGG+AGG | + | chr2.3:3902481-3902500 | MS.gene76153:CDS | 50.0% |
| ! | TTAGACCTTGCGGAGTACCT+AGG | - | chr2.3:3902388-3902407 | None:intergenic | 50.0% |
| ACACTGTTCGGACGAGGTTG+CGG | + | chr2.3:3900432-3900451 | MS.gene76153:CDS | 55.0% | |
| AGATGACGAGGATGCTGTGG+CGG | + | chr2.3:3902594-3902613 | MS.gene76153:CDS | 55.0% | |
| CGTTGGGAGAAACCCCATCT+GGG | + | chr2.3:3900551-3900570 | MS.gene76153:CDS | 55.0% | |
| TCGTTGGGAGAAACCCCATC+TGG | + | chr2.3:3900550-3900569 | MS.gene76153:CDS | 55.0% | |
| TGACGATGAGGAGGAGGAAG+AGG | + | chr2.3:3902549-3902568 | MS.gene76153:CDS | 55.0% | |
| ATGACGAGGATGCTGTGGCG+GGG | + | chr2.3:3902596-3902615 | MS.gene76153:CDS | 60.0% | |
| CGATGAGGAGGAGGAAGAGG+AGG | + | chr2.3:3902552-3902571 | MS.gene76153:CDS | 60.0% | |
| GATGACGAGGATGCTGTGGC+GGG | + | chr2.3:3902595-3902614 | MS.gene76153:CDS | 60.0% | |
| TGAGGAGGAGGAAGAGGAGG+AGG | + | chr2.3:3902555-3902574 | MS.gene76153:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 3900378 | 3902621 | 3900378 | ID=MS.gene76153 |
| chr2.3 | mRNA | 3900378 | 3902621 | 3900378 | ID=MS.gene76153.t1;Parent=MS.gene76153 |
| chr2.3 | exon | 3900378 | 3900759 | 3900378 | ID=MS.gene76153.t1.exon1;Parent=MS.gene76153.t1 |
| chr2.3 | CDS | 3900378 | 3900759 | 3900378 | ID=cds.MS.gene76153.t1;Parent=MS.gene76153.t1 |
| chr2.3 | exon | 3902140 | 3902621 | 3902140 | ID=MS.gene76153.t1.exon2;Parent=MS.gene76153.t1 |
| chr2.3 | CDS | 3902140 | 3902621 | 3902140 | ID=cds.MS.gene76153.t1;Parent=MS.gene76153.t1 |
| Gene Sequence |
| Protein sequence |
