AlfalfaGEDB | MS.gene77164

M. sativa cultivar XinJiangDaYe / MS.gene77164

KEGG: -
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00176.26 PF00271.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77164.t1	XP_013470409.1	97.2	707	19	1	1	707	301	1006	0.00E+00	1328.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77164.t1	Q94BR5	63.9	717	243	8	1	707	237	947	6.0e-238	825.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77164.t1	A0A072VRQ7	97.2	707	19	1	1	707	301	1006	0.0e+00	1328.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene77164.t1	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene050551	MS.gene77164	PPI
MS.gene77164	MS.gene064351	PPI
MS.gene77164	MS.gene22899	PPI
MS.gene77164	MS.gene035828	PPI
MS.gene77164	MS.gene043593	PPI
MS.gene77164	MS.gene032628	PPI
MS.gene77164	MS.gene050374	PPI
MS.gene77164	MS.gene026001	PPI
MS.gene77164	MS.gene73093	PPI
MS.gene77164	MS.gene068879	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77164.t1	MTR_1g115215	97.313	707	18	1	1	707	301	1006	0.0	1412
MS.gene77164.t1	MTR_2g012830	57.282	721	278	12	1	707	565	1269	0.0	760
MS.gene77164.t1	MTR_1g044120	32.539	713	341	18	13	707	534	1124	7.92e-98	327
MS.gene77164.t1	MTR_2g084630	32.118	713	345	21	13	708	404	994	8.17e-97	322
MS.gene77164.t1	MTR_2g084630	31.302	722	348	23	13	708	398	997	6.07e-89	300
MS.gene77164.t1	MTR_4g049500	30.092	761	349	22	13	707	260	903	5.04e-82	280
MS.gene77164.t1	MTR_7g089190	28.857	700	333	17	13	707	250	789	7.24e-81	274
MS.gene77164.t1	MTR_1g035330	45.299	117	63	1	587	703	588	703	6.03e-24	107
MS.gene77164.t1	MTR_7g090960	45.082	122	66	1	583	704	1206	1326	2.46e-23	106
MS.gene77164.t1	MTR_7g090960	21.975	314	163	8	105	399	631	881	5.72e-12	70.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene77164.t1	AT1G50410	66.852	718	220	10	1	707	237	947	923
MS.gene77164.t1	AT1G50410	66.852	718	220	10	1	707	237	947	923
MS.gene77164.t1	AT1G50410	66.852	718	220	10	1	707	237	947	923
MS.gene77164.t1	AT3G20010	62.943	734	233	13	1	707	292	1013	857
MS.gene77164.t1	AT3G20010	62.943	734	233	13	1	707	292	1013	857
MS.gene77164.t1	AT3G20010	62.943	734	233	13	1	707	292	1013	857
MS.gene77164.t1	AT3G20010	62.943	734	233	13	1	707	1	722	857
MS.gene77164.t1	AT3G20010	62.943	734	233	13	1	707	26	747	857
MS.gene77164.t1	AT1G50410	63.902	651	218	9	1	640	237	881	790
MS.gene77164.t1	AT3G20010	59.398	665	232	12	1	638	292	945	723

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Find 137 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGGTGGTGCTTGTC+TGG	0.385925	2.2:-27716511	MS.gene77164:CDS
AAACAGGAGTTTGCATTGCT+TGG	0.345698	2.2:-27717349	MS.gene77164:CDS
AAACCTTGGTTTAAATAATA+TGG	0.188675	2.2:-27713224	MS.gene77164:CDS
AAAGAATCATAGGACTCAGA+TGG	0.603963	2.2:-27716560	MS.gene77164:CDS
AAAGGCAATCACAGATAAAA+TGG	0.318808	2.2:-27717170	MS.gene77164:CDS
AAAGGTAGGAAGGGATTAGT+CGG	0.569338	2.2:-27716658	MS.gene77164:CDS
AAATATTCAGAGTGCACATC+TGG	0.395770	2.2:-27713709	MS.gene77164:CDS
AACAGGAGTTTGCATTGCTT+GGG	0.374896	2.2:-27717348	MS.gene77164:CDS
AACAGTTAGTCTGGAGAAGG+TGG	0.536515	2.2:-27715468	MS.gene77164:CDS
AACTTGACTGCAGAACCTCA+AGG	0.667843	2.2:+27713851	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGCAATCACAGATAAAA+TGG	-	chr2.2:27713253-27713272	MS.gene77164:CDS	30.0%
AAATATGTCTAGCATTCTGA+TGG	+	chr2.2:27714555-27714574	None:intergenic	30.0%
AATAACAGAACATGTACCAT+AGG	+	chr2.2:27715593-27715612	None:intergenic	30.0%
AATATGTCTAGCATTCTGAT+GGG	+	chr2.2:27714554-27714573	None:intergenic	30.0%
ACAGTAGATAATCCAATTTC+TGG	+	chr2.2:27717084-27717103	None:intergenic	30.0%
ACCTTGATGAGTAAAATGTT+CGG	+	chr2.2:27714782-27714801	None:intergenic	30.0%
ACTTGTAAGATGCAATCAAA+AGG	+	chr2.2:27715561-27715580	None:intergenic	30.0%
ATCATCATCATCCAAATTCA+AGG	+	chr2.2:27713313-27713332	None:intergenic	30.0%
ATCTAAATAACAGAGTCATC+AGG	+	chr2.2:27716244-27716263	None:intergenic	30.0%
ATGGAAACAAGTCAAAGTTA+AGG	-	chr2.2:27715826-27715845	MS.gene77164:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	27713060	27717385	27713060	ID=MS.gene77164
chr2.2	mRNA	27713060	27717385	27713060	ID=MS.gene77164.t1;Parent=MS.gene77164
chr2.2	exon	27717326	27717385	27717326	ID=MS.gene77164.t1.exon1;Parent=MS.gene77164.t1
chr2.2	CDS	27717326	27717385	27717326	ID=cds.MS.gene77164.t1;Parent=MS.gene77164.t1
chr2.2	exon	27716329	27717235	27716329	ID=MS.gene77164.t1.exon2;Parent=MS.gene77164.t1
chr2.2	CDS	27716329	27717235	27716329	ID=cds.MS.gene77164.t1;Parent=MS.gene77164.t1
chr2.2	exon	27715403	27715533	27715403	ID=MS.gene77164.t1.exon3;Parent=MS.gene77164.t1
chr2.2	CDS	27715403	27715533	27715403	ID=cds.MS.gene77164.t1;Parent=MS.gene77164.t1
chr2.2	exon	27714964	27715189	27714964	ID=MS.gene77164.t1.exon4;Parent=MS.gene77164.t1
chr2.2	CDS	27714964	27715189	27714964	ID=cds.MS.gene77164.t1;Parent=MS.gene77164.t1
chr2.2	exon	27713549	27714132	27713549	ID=MS.gene77164.t1.exon5;Parent=MS.gene77164.t1
chr2.2	CDS	27713549	27714132	27713549	ID=cds.MS.gene77164.t1;Parent=MS.gene77164.t1
chr2.2	exon	27713060	27713278	27713060	ID=MS.gene77164.t1.exon6;Parent=MS.gene77164.t1
chr2.2	CDS	27713060	27713278	27713060	ID=cds.MS.gene77164.t1;Parent=MS.gene77164.t1

Gene Sequence

>MS.gene77164

ATGCTTCAGAGGGAAAACAGGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGTTATTTTTGAATCATCATTTTTTAATGACAAGCACTTGATATTTAACTGTGAACATTTTTATCTCAACTTTATAACCTTGTTCAAACAGGGTCTTGGAAAGACAATTTCAACGATTGCTCTCATCCTAATGCAAAGGCAATCACAGATAAAATGGAAAACAGATGATCCACGCAACCATAAAGCTGAAGCCTTGAATTTGGATGATGATGATGAGAATGGTAGTATTGATGTGGAAAAGGAAAAGCTTAAAAATGATGAAGAATCCAATGATGCAAAACCTATTATTGAACCGAGTAGTTCAACACAGGCCCCAGGTAGGAAAAGGCCAGCTGCTGGTACACTGGTTGTCTGCCCTGCAAGTGTTCTTCGGCAGTGGGCCAGAGAGCTTGATGAGAAAGTTGGAGATGAAAAGCTCTCTGTTTTGATTTTTCATGGGGGCAGTAGGACAAAGGATCCTGTTGAACTTGCAAAATATGATGTGGTTCTCACAACATACTCTCTTGTGACTAATGAAGTTCCCAAACAACCTTTAGTCGAGGAGGATGATATTGATGAAAAAGACGGGGAAAAGTTTGGCTTATCCTCCGATTTTTCTGTCAATAAAAAGAGGAAAAAGCTATATAATGGAAGTAAAAAGGGTAAAAAAGGTAGGAAGGGATTAGTCGGCTCTTCTTTCGATTGCGGTGGCGCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACGATAAAGAATCATAGGACTCAGATGGCCAGAGCTTGCTCCAGCCTTAGGGCAAAAAGAAGGTGGTGCTTGTCTGGCACGCCTATTCAGAATACCATCGATGATTTATATAGCTACTTTAGGTTCCTGAAGTATGATCCTTATGCTGTGTATAAATCATTCTACAATACAATAAAAGTCCCAATATCCAGAAATTCTATTCAAGGTTACAAAAAACTTCAAGCAGTTTTGAGGGCCATAATGCTACGTCGTACAAAAGGTGATTTTTTTTTTTCTTCATAATCTGGCTGCTAAGTCTTGATTGGATAGATTGTATGAATTTATCGTTTTCCTGGCTTGATTTAGGTTTTAAGTGTCATAGCAATATTGTTTGCTGATCTCCTCTTTAGTTAAAGTTCATGACTTAGATAATTTTTCATTGATTCTTTTTCTCATTTCCTTCTCTAACTTTGGTACCACCAATCAGCACACATTCATTCTTGTACAGGACAACCTCGTCCAGTTGTAATGATGTCAAGTCTTAAGTGAGTATGAAAAGCGAGTCATTGATGATCCTGGAAAGAATTCTTGCCATGCAAGCCACCTTCCATTAGTTTGATAAGTTTAGCCGAGGGTTTTGTAGTGGTGTGTGTCGACACCAAGTATTATATTTGGTGTTAATTTCATGTCCTTTGTTCTTCCCTCCATGAAATTCCCATCAGAATGCTAGACATATTTATTTATTTTGTTACATTGTTGATTTATTAAATTTTCTGTTTTGACTAAATTTTCTTGTTTTTAAATGATGGAATTATTTCTTCTATTCAATGAACTCATCCTTGATTTCTTTTTTAACGAGTCTGTGGCCATCATGTATAATGTAATGAATTTGGGATTGTTTCACCATAAAGAAATATAATATTGTTTCGTTAAGGGAGTGGACCGAACATTTTACTCATCAAGGTTTCTGGTTAGAGTGATCCCGATTTTCTTTAAAGTTGGTGTCATATTTACTGTATAGGGGTGATTATTTGTCTATTCTGTTTTTTCATATCAATTTATTTTATTTGTCTAGGAACTTTGCTTGATGGCAAGCCTATAATCACTTTACCTCCTAAAACAGTTAGTCTGGAGAAGGTGGATTTCTCCTATGAGGAGCGGGCCTTCTACAAGAAGTTGGAAGCTGATTCACGTTCTCAATTTAAGGTTTATTTCCTTTTATATTGCTTATATTAACTTGGTTGGACATAATGTAATGATACTGTTTGTTTTTCCCTGTCAAAATTAGTGTCTAGAAATTCGTTTTGATATTGGGTCAAGGCAATTGCAAATTATATGACATTGTTGTTCATCTGATATTTCTATGCTGATGGATATTACAAATTTGTAGTTCTGAAATGAAATGCTTGTACTTTGCAGGCATATGCAGCTGCTGGCACAGTAAATCAAAACTACGCAAATATTCTTTTAATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCGCTTCTTGTTAAAGAATATAATTTTGATCCTGTTGGGAAAGATTCTGTTGAAATGGCAAAAAAGCTTCCAAAGGAGATGCTGATCAATCTGTTTAATAGTCTGGAAACAACTTCCGCTATATGCTGTGTCTGCAATGTGAGTTAATTTTGATATGATAATTTCGTTATTGGTTTCCTTTGTTGCAATTGTGCCTCCTAAAAACATCCGGTATAGATCCTTTTGATTGCATCTTACAAGTCTTACTCTTCCTATGGTACATGTTCTGTTATTTGTCTAATGAATAATATTAGGAGGTACACTTCTCGATGGTTTGATATATGATTAAGTCTGTTAACAGATGTTTCTAAGCATATGTTTACTCTGATCATGTTTTAGGAGCGTCACACTATTAGTCTTTTCGGAACACTATAAATACACTTTGTTCACAAAATCAGGCAAAGTTTAACACTTAAAACCTTCAGTGTTAGAAAGTCATGTATTATGATGGAAACAAGTCAAAGTTAAGGAGTTCTAGTTGTATGTTTTGGCAAAATAAAACCCATATCATCACAAAGTAGTTATAGAATATATTTTAGGGGGGATGCATTCCAAGGGTATTTCATGTAGCACAATCCAAAACTACCAGGTAGCAGGTGATGTGATTTAATAATTGTTGTTTGAAAAAGTAAGTTTATTCAAATGAAGATAAAGGATTTTCAAGGAGGGCTGATCATCTTAATTGAGACCCTGTTTTATCAATTTGTTGATTGATTACTGAACTTGTTTTTATTATAATTTTCTACTTGAATGTCTGGAATTTTATTTATCTGTTAACCTGTTATTGCCAAGTGGTAAACAGTAGCTATGCATTGTCATTAAGGGTTCTGGCTGATTTATACTATGGTTTCAACAGGATCCACCTGATGACTCTGTTATTTAGATGTGTGGGGACCATATTCGATTGCCTCGTATAGAACCAACCCCAAAAAAGGTCACTGGAAATGGCTGCCTCACTGCGTGGACCATGTCTTCTGTTATCAATGCGTGTCAGAACATTTGACAAGTGATGATAATATGTGCCCTGCAGTTCATTGTAAAGAACAACTTGGGGAAGATCTTGTTTTCTCCAAAGCAACTTTGAGGAGTTGCCTCTGTGACGATCTTGGTGGTAGTAGTTCTAGCAAATCGAGTCTTGTTGATTATTCCCTAGTACAGAACAGTGAGTACAGCTCATCTAAAATCAAAGCTGTCCTTGAGGTTCTGCAGTCAAGTTGTAAATTGAAGACTCCTGGCTTACTGAATACCCCCGAAGGCAATAGAGATTCACTGCCTTCTGATGATTCCGATATTGAAGATTTTGATTCAGATGTCAAGGTTACAAAACACACAAGTAAATATTCAGAGTGCACATCTGGAGGACCACTAAAGGCTATAATTTTTTCTCAGTGGACTAGCATGTTGGACTTGGTCGAGACATCAATGGAGCAATCTGGCGTCAAATACAGGAGACTTGATGGCAGGATGACTCTTACTGCGAGGGACAGAGCTGTTAAGGATTTCAATACTGATCCTGAGGTTTGGCCATCCCCAATATTGTTAAAGCTGTAACTTCTTTTTATTCAAATCTATAAATGACACCAAGAAATGTGATGTAAGAACCTGTTTGTTAGTAGCTGAAGTACACCAAGAAATTAAATATGCTTTTTTCATTACGTCAATAACCCTGATTGCACTGCTAATCAGTATAATTAAACTAATACCAGAAATTGGATTATCTACTGTGATTCAAATGTGTAAACCTAGATTTTCTTTGTTGGCTGACTCACTTGATTTTTTTCTTTTCAGATTACTGTTATGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTAAATAATATGGTTGCCGCATGTCATGTTATTCTTTTGGACCTTTGGTGGAATCCAACTACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAGACTCGTCCTGTTACTGTGACACGGATCACCATAAAAGATACAGTTGAAGATAGAATATTGGCTCTACAGGTTTAA

Protein sequence

>MS.gene77164.t1

MLQRENRSLHCLGGILADDQGLGKTISTIALILMQRQSQIKWKTDDPRNHKAEALNLDDDDENGSIDVEKEKLKNDEESNDAKPIIEPSSSTQAPGRKRPAAGTLVVCPASVLRQWARELDEKVGDEKLSVLIFHGGSRTKDPVELAKYDVVLTTYSLVTNEVPKQPLVEEDDIDEKDGEKFGLSSDFSVNKKRKKLYNGSKKGKKGRKGLVGSSFDCGGALAKVGWFRVILDEAQTIKNHRTQMARACSSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSIQGYKKLQAVLRAIMLRRTKGTLLDGKPIITLPPKTVSLEKVDFSYEERAFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKEYNFDPVGKDSVEMAKKLPKEMLINLFNSLETTSAICCVCNVSHWKWLPHCVDHVFCYQCVSEHLTSDDNMCPAVHCKEQLGEDLVFSKATLRSCLCDDLGGSSSSKSSLVDYSLVQNSEYSSSKIKAVLEVLQSSCKLKTPGLLNTPEGNRDSLPSDDSDIEDFDSDVKVTKHTSKYSECTSGGPLKAIIFSQWTSMLDLVETSMEQSGVKYRRLDGRMTLTARDRAVKDFNTDPEITVMLMSLKAGNLGLNNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQV