Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77467.t1 | RHN69088.1 | 75.6 | 209 | 19 | 4 | 1 | 197 | 1 | 189 | 1.60E-75 | 292.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77467.t1 | A0A396IWV3 | 75.6 | 209 | 19 | 4 | 1 | 197 | 1 | 189 | 1.2e-75 | 292.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70443 | MS.gene77467 | PPI |
| MS.gene77467 | MS.gene71282 | PPI |
| MS.gene044363 | MS.gene77467 | PPI |
| MS.gene77467 | MS.gene71524 | PPI |
| MS.gene77467 | MS.gene71528 | PPI |
| MS.gene77467 | MS.gene70424 | PPI |
| MS.gene70430 | MS.gene77467 | PPI |
| MS.gene77467 | MS.gene77464 | PPI |
| MS.gene77467 | MS.gene71284 | PPI |
| MS.gene77467 | MS.gene044326 | PPI |
| MS.gene77467 | MS.gene70427 | PPI |
| MS.gene77467 | MS.gene70476 | PPI |
| MS.gene77472 | MS.gene77467 | PPI |
| MS.gene70418 | MS.gene77467 | PPI |
| MS.gene77467 | MS.gene049263 | PPI |
| MS.gene77467 | MS.gene25704 | PPI |
| MS.gene77467 | MS.gene77468 | PPI |
| MS.gene77467 | MS.gene71531 | PPI |
| MS.gene77467 | MS.gene044323 | PPI |
| MS.gene77467 | MS.gene044376 | PPI |
| MS.gene79115 | MS.gene77467 | PPI |
| MS.gene044370 | MS.gene77467 | PPI |
| MS.gene77467 | MS.gene045214 | PPI |
| MS.gene77467 | MS.gene77466 | PPI |
| MS.gene77467 | MS.gene044361 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77467.t1 | MTR_3g083030 | 53.419 | 234 | 68 | 7 | 1 | 197 | 1 | 230 | 1.88e-71 | 216 |
| MS.gene77467.t1 | MTR_3g083050 | 53.738 | 214 | 75 | 6 | 1 | 197 | 1 | 207 | 4.74e-63 | 194 |
| MS.gene77467.t1 | MTR_3g083080 | 48.815 | 211 | 87 | 5 | 1 | 196 | 1 | 205 | 1.41e-60 | 188 |
| MS.gene77467.t1 | MTR_3g082340 | 35.426 | 223 | 116 | 10 | 1 | 196 | 1 | 222 | 3.85e-23 | 92.4 |
| MS.gene77467.t1 | MTR_3g082420 | 37.433 | 187 | 93 | 9 | 30 | 196 | 39 | 221 | 8.24e-23 | 91.7 |
| MS.gene77467.t1 | MTR_3g086030 | 45.283 | 106 | 38 | 3 | 30 | 123 | 6 | 103 | 3.13e-21 | 85.9 |
| MS.gene77467.t1 | MTR_3g083150 | 31.507 | 219 | 121 | 6 | 1 | 197 | 1 | 212 | 4.28e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGTTCCGGTTCCGGTTTC+AGG | 0.174029 | 3.2:-71968364 | None:intergenic |
| TCCAACTTCAGTTCCGGTTC+CGG | 0.326780 | 3.2:-71968371 | None:intergenic |
| CCTCTTTCATCGCAGCTATC+CGG | 0.342132 | 3.2:-71968335 | None:intergenic |
| TTCGGTTCCAACTTCAGTTC+CGG | 0.351103 | 3.2:-71968377 | None:intergenic |
| GAAATACAATACTGAGAATC+AGG | 0.365773 | 3.2:+71970286 | MS.gene77467:CDS |
| GCATGTTTAAGTTGCCGTTT+CGG | 0.375760 | 3.2:-71968395 | None:intergenic |
| CTCTTTCATCGCAGCTATCC+GGG | 0.391793 | 3.2:-71968334 | None:intergenic |
| TCCCCTCTGCGAGGCTGCGT+TGG | 0.405826 | 3.2:+71970262 | MS.gene77467:CDS |
| CTGCCGTGTTACAACATTCC+AGG | 0.420339 | 3.2:+71970490 | MS.gene77467:CDS |
| TCGCTTCGAGTATAGGAATA+AGG | 0.423727 | 3.2:+71968505 | MS.gene77467:CDS |
| CCGAGAATTGCAGGATTAGT+TGG | 0.424527 | 3.2:+71970191 | MS.gene77467:intron |
| CGATCACATTTAAATATAAG+AGG | 0.432066 | 3.2:-71968485 | None:intergenic |
| CAACATTCCAGGCACAAGTC+TGG | 0.445688 | 3.2:+71970501 | MS.gene77467:CDS |
| CGCAGAGGGGAGTGAGTTGA+AGG | 0.451519 | 3.2:-71970250 | None:intergenic |
| TCGGATGACGCCGAACAAAC+AGG | 0.454507 | 3.2:-71968306 | None:intergenic |
| AATGTGATCGCTTCGAGTAT+AGG | 0.463814 | 3.2:+71968498 | MS.gene77467:CDS |
| GGATCCGATACCTGTTTGTT+CGG | 0.471624 | 3.2:+71968296 | MS.gene77467:CDS |
| AAGGCGAAGATCATCATTGA+TGG | 0.480182 | 3.2:-71970231 | None:intergenic |
| AAGAGGGAAGTGCCTGAAAC+CGG | 0.483559 | 3.2:+71968352 | MS.gene77467:CDS |
| ACCGGAACCGGAACTGAAGT+TGG | 0.497592 | 3.2:+71968370 | MS.gene77467:CDS |
| TGTTGTAACACGGCAGCAGT+TGG | 0.504047 | 3.2:-71970483 | None:intergenic |
| CGGCGTCATCCGACCTGCCC+CGG | 0.523577 | 3.2:+71968316 | MS.gene77467:CDS |
| GTTGTAACACGGCAGCAGTT+GGG | 0.523905 | 3.2:-71970482 | None:intergenic |
| CGCAGCTATCCGGGGCAGGT+CGG | 0.524449 | 3.2:-71968325 | None:intergenic |
| AACGGCAACTTAAACATGCA+TGG | 0.528024 | 3.2:+71968399 | MS.gene77467:CDS |
| TCATCGCAGCTATCCGGGGC+AGG | 0.528179 | 3.2:-71968329 | None:intergenic |
| AACTGAAGTTGGAACCGAAA+CGG | 0.529822 | 3.2:+71968381 | MS.gene77467:CDS |
| ATACATACCACCAGGTCTCC+AGG | 0.529976 | 3.2:-71970426 | None:intergenic |
| CACCAACGCAGCCTCGCAGA+GGG | 0.535103 | 3.2:-71970264 | None:intergenic |
| CTGACATTGTGAAGACAACC+TGG | 0.546641 | 3.2:+71970408 | MS.gene77467:CDS |
| GAAGTGCCTGAAACCGGAAC+CGG | 0.547790 | 3.2:+71968358 | MS.gene77467:CDS |
| CCGGATAGCTGCGATGAAAG+AGG | 0.559882 | 3.2:+71968335 | MS.gene77467:CDS |
| GAAGATCATCATTGATGGGA+AGG | 0.563367 | 3.2:-71970226 | None:intergenic |
| AGATCATCATTGATGGGAAG+GGG | 0.573339 | 3.2:-71970224 | None:intergenic |
| CGGATAGCTGCGATGAAAGA+GGG | 0.573668 | 3.2:+71968336 | MS.gene77467:CDS |
| ACGGCAACTTAAACATGCAT+GGG | 0.577716 | 3.2:+71968400 | MS.gene77467:CDS |
| CAGAGCAGTCACTAATCTCA+AGG | 0.578303 | 3.2:-71968442 | None:intergenic |
| GAGGCCTGTGTCTGAGTCTG+AGG | 0.582177 | 3.2:+71970529 | MS.gene77467:CDS |
| AAGATCATCATTGATGGGAA+GGG | 0.584250 | 3.2:-71970225 | None:intergenic |
| GACGCCGAACAAACAGGTAT+CGG | 0.594685 | 3.2:-71968300 | None:intergenic |
| GTGAAGACAACCTGGAGACC+TGG | 0.604519 | 3.2:+71970416 | MS.gene77467:CDS |
| AGGCGAAGATCATCATTGAT+GGG | 0.608811 | 3.2:-71970230 | None:intergenic |
| ATGACCTCAGACTCAGACAC+AGG | 0.613733 | 3.2:-71970533 | None:intergenic |
| GAGCTGTTTGTACTCAGCCA+TGG | 0.614513 | 3.2:-71968561 | None:intergenic |
| TCTTTCATCGCAGCTATCCG+GGG | 0.623898 | 3.2:-71968333 | None:intergenic |
| TAAGGAGATTAAAGTCGCCA+TGG | 0.636681 | 3.2:+71968544 | MS.gene77467:CDS |
| TCACCAACGCAGCCTCGCAG+AGG | 0.646731 | 3.2:-71970265 | None:intergenic |
| TCAACTCACTCCCCTCTGCG+AGG | 0.647226 | 3.2:+71970253 | MS.gene77467:CDS |
| TACGTACACTTAGGCCGCGA+CGG | 0.647938 | 3.2:-71968583 | None:intergenic |
| GTAACACGGCAGCAGTTGGG+AGG | 0.652651 | 3.2:-71970479 | None:intergenic |
| GTAATATAATACATACCACC+AGG | 0.693054 | 3.2:-71970434 | None:intergenic |
| ACCAACGCAGCCTCGCAGAG+GGG | 0.695672 | 3.2:-71970263 | None:intergenic |
| GAGTACAAACAGCTCCGTCG+CGG | 0.736504 | 3.2:+71968569 | MS.gene77467:CDS |
| GTGCCTGGAATGTTGTAACA+CGG | 0.759624 | 3.2:-71970493 | None:intergenic |
| AAGACAACCTGGAGACCTGG+TGG | 0.761347 | 3.2:+71970419 | MS.gene77467:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATTCTAATGTAGAAA+AGG | - | chr3.2:71968861-71968880 | None:intergenic | 15.0% |
| !!! | TTTTCTACATTAGAATATTA+TGG | + | chr3.2:71968860-71968879 | MS.gene77467:intron | 15.0% |
| !! | ACCTATAAATAGACTTATAT+GGG | - | chr3.2:71968793-71968812 | None:intergenic | 20.0% |
| ! | AAGACCAATAACAAATATCA+TGG | - | chr3.2:71969158-71969177 | None:intergenic | 25.0% |
| ! | ACCCATATAAGTCTATTTAT+AGG | + | chr3.2:71968789-71968808 | MS.gene77467:intron | 25.0% |
| ! | AGAATATTATGGATGTTTCT+AGG | + | chr3.2:71968871-71968890 | MS.gene77467:intron | 25.0% |
| ! | ATATATAGATACGTACACTT+AGG | - | chr3.2:71968595-71968614 | None:intergenic | 25.0% |
| ! | CAACTTAACATAGACATTAA+TGG | + | chr3.2:71969969-71969988 | MS.gene77467:intron | 25.0% |
| ! | CACCTATAAATAGACTTATA+TGG | - | chr3.2:71968794-71968813 | None:intergenic | 25.0% |
| ! | CGATCACATTTAAATATAAG+AGG | - | chr3.2:71968488-71968507 | None:intergenic | 25.0% |
| ! | GTTATAGAAGAACATATAGT+TGG | + | chr3.2:71969631-71969650 | MS.gene77467:intron | 25.0% |
| ! | TGCAATGTCAATAATATTGA+AGG | - | chr3.2:71968737-71968756 | None:intergenic | 25.0% |
| ! | TTCAAGCAAAAAAACTAAGA+AGG | - | chr3.2:71969525-71969544 | None:intergenic | 25.0% |
| !!! | CTCTTACTTAATTTTGTTTC+TGG | + | chr3.2:71970143-71970162 | MS.gene77467:intron | 25.0% |
| !!! | TTCTAGAACTAGAATAATCT+AGG | + | chr3.2:71968825-71968844 | MS.gene77467:intron | 25.0% |
| AAAAACTAAGAAGGCTATAG+AGG | - | chr3.2:71969516-71969535 | None:intergenic | 30.0% | |
| AATCTTCAACAATGTTGACA+AGG | - | chr3.2:71969232-71969251 | None:intergenic | 30.0% | |
| AATGTAGAAAAGGCAAACAA+AGG | - | chr3.2:71968851-71968870 | None:intergenic | 30.0% | |
| AATTGAAAGCCAAACGAAAA+CGG | - | chr3.2:71970091-71970110 | None:intergenic | 30.0% | |
| AGATTGTTCCATTAATGTCT+AGG | - | chr3.2:71968908-71968927 | None:intergenic | 30.0% | |
| ATAACAAATATCATGGCAAG+AGG | - | chr3.2:71969151-71969170 | None:intergenic | 30.0% | |
| ATTAGTGATGAGCATATTGT+AGG | + | chr3.2:71968684-71968703 | MS.gene77467:intron | 30.0% | |
| ATTGTTGAAGATTTCTGACA+GGG | + | chr3.2:71969239-71969258 | MS.gene77467:intron | 30.0% | |
| CAACTTAACCTAGACATTAA+TGG | + | chr3.2:71968897-71968916 | MS.gene77467:intron | 30.0% | |
| CTCCATTTATATTTATTGCC+TGG | + | chr3.2:71969390-71969409 | MS.gene77467:intron | 30.0% | |
| GAAATACAATACTGAGAATC+AGG | + | chr3.2:71970286-71970305 | MS.gene77467:CDS | 30.0% | |
| GTAATATAATACATACCACC+AGG | - | chr3.2:71970437-71970456 | None:intergenic | 30.0% | |
| GTCCAGGCAATAAATATAAA+TGG | - | chr3.2:71969395-71969414 | None:intergenic | 30.0% | |
| TTATTGACATTGCATCTCAA+AGG | + | chr3.2:71968743-71968762 | MS.gene77467:intron | 30.0% | |
| ! | AGTTTTCGAAATATGCATCA+AGG | - | chr3.2:71969020-71969039 | None:intergenic | 30.0% |
| ! | ATCTTGTTCTTTTGCTTGAA+AGG | - | chr3.2:71970459-71970478 | None:intergenic | 30.0% |
| ! | TATCTCATTTTGCTTTCTGT+TGG | + | chr3.2:71968624-71968643 | MS.gene77467:intron | 30.0% |
| !! | CTTGCCATGATATTTGTTAT+TGG | + | chr3.2:71969151-71969170 | MS.gene77467:intron | 30.0% |
| !! | TATGAAAAGAGTATCAATGC+AGG | - | chr3.2:71969093-71969112 | None:intergenic | 30.0% |
| AAGATCATCATTGATGGGAA+GGG | - | chr3.2:71970228-71970247 | None:intergenic | 35.0% | |
| AATCTACTACATGAGTGACA+AGG | - | chr3.2:71969297-71969316 | None:intergenic | 35.0% | |
| AGATTCACATACAACTAAGG+AGG | - | chr3.2:71969209-71969228 | None:intergenic | 35.0% | |
| AGGAGATTCACATACAACTA+AGG | - | chr3.2:71969212-71969231 | None:intergenic | 35.0% | |
| ATACAACTAAGGAGGAAGAA+TGG | - | chr3.2:71969201-71969220 | None:intergenic | 35.0% | |
| ATTGCATCTCAAAGGCTTAA+AGG | + | chr3.2:71968751-71968770 | MS.gene77467:intron | 35.0% | |
| CATGTAGTAGATTCTTGACA+GGG | + | chr3.2:71969304-71969323 | MS.gene77467:intron | 35.0% | |
| CATTGTTGAAGATTTCTGAC+AGG | + | chr3.2:71969238-71969257 | MS.gene77467:intron | 35.0% | |
| GGCTCAGATTCAAAAAGATA+AGG | + | chr3.2:71968526-71968545 | MS.gene77467:CDS | 35.0% | |
| GTCTATGACTCAAACACAAA+AGG | - | chr3.2:71969583-71969602 | None:intergenic | 35.0% | |
| TCATGTAGTAGATTCTTGAC+AGG | + | chr3.2:71969303-71969322 | MS.gene77467:intron | 35.0% | |
| TGTTGGAAAATATAGCGTGA+GGG | + | chr3.2:71968641-71968660 | MS.gene77467:intron | 35.0% | |
| TTTCGAAATATGCATCAAGG+AGG | - | chr3.2:71969017-71969036 | None:intergenic | 35.0% | |
| ! | CTTAACTTGAGTACAAGCAT+AGG | - | chr3.2:71969353-71969372 | None:intergenic | 35.0% |
| AACGGCAACTTAAACATGCA+TGG | + | chr3.2:71968399-71968418 | MS.gene77467:CDS | 40.0% | |
| AACTGAAGTTGGAACCGAAA+CGG | + | chr3.2:71968381-71968400 | MS.gene77467:CDS | 40.0% | |
| AAGGCGAAGATCATCATTGA+TGG | - | chr3.2:71970234-71970253 | None:intergenic | 40.0% | |
| AATGTGATCGCTTCGAGTAT+AGG | + | chr3.2:71968498-71968517 | MS.gene77467:CDS | 40.0% | |
| ACAAATATCATGGCAAGAGG+TGG | - | chr3.2:71969148-71969167 | None:intergenic | 40.0% | |
| ACGGCAACTTAAACATGCAT+GGG | + | chr3.2:71968400-71968419 | MS.gene77467:CDS | 40.0% | |
| AGATCATCATTGATGGGAAG+GGG | - | chr3.2:71970227-71970246 | None:intergenic | 40.0% | |
| AGGCGAAGATCATCATTGAT+GGG | - | chr3.2:71970233-71970252 | None:intergenic | 40.0% | |
| AGTGATGAGCATATTGTAGG+AGG | + | chr3.2:71968687-71968706 | MS.gene77467:intron | 40.0% | |
| CATAGGTCTTCGACATTAGT+CGG | + | chr3.2:71969449-71969468 | MS.gene77467:intron | 40.0% | |
| CCAACTAATCCTGCAATTCT+CGG | - | chr3.2:71970194-71970213 | None:intergenic | 40.0% | |
| CTGTTGGAAAATATAGCGTG+AGG | + | chr3.2:71968640-71968659 | MS.gene77467:intron | 40.0% | |
| GAAGATCATCATTGATGGGA+AGG | - | chr3.2:71970229-71970248 | None:intergenic | 40.0% | |
| GAGGAGACACATTAGTGATA+TGG | + | chr3.2:71968706-71968725 | MS.gene77467:intron | 40.0% | |
| GTACTCAAGTTAAGCATCAG+AGG | + | chr3.2:71969359-71969378 | MS.gene77467:intron | 40.0% | |
| TAAGGAGATTAAAGTCGCCA+TGG | + | chr3.2:71968544-71968563 | MS.gene77467:CDS | 40.0% | |
| TAGTCGGACTTGAACTTTAG+AGG | + | chr3.2:71969465-71969484 | MS.gene77467:intron | 40.0% | |
| TCGCTTCGAGTATAGGAATA+AGG | + | chr3.2:71968505-71968524 | MS.gene77467:CDS | 40.0% | |
| TCTTGATGAAGACTTCTGCA+TGG | + | chr3.2:71969174-71969193 | MS.gene77467:intron | 40.0% | |
| TTTGAATAGAGCACAAGTCC+AGG | - | chr3.2:71969411-71969430 | None:intergenic | 40.0% | |
| ! | CAACACTTTCCGTTTTCGTT+TGG | + | chr3.2:71970079-71970098 | MS.gene77467:intron | 40.0% |
| ! | CACGCTATATTTTCCAACAG+TGG | - | chr3.2:71968640-71968659 | None:intergenic | 40.0% |
| ! | GACTTGAACTTTAGAGGATC+GGG | + | chr3.2:71969471-71969490 | MS.gene77467:intron | 40.0% |
| ! | GGACTTGAACTTTAGAGGAT+CGG | + | chr3.2:71969470-71969489 | MS.gene77467:intron | 40.0% |
| ! | TTGAGTGTCTTATTCGCCAT+AGG | + | chr3.2:71969432-71969451 | MS.gene77467:intron | 40.0% |
| !! | AACATATAGTTGGTGACACG+AGG | + | chr3.2:71969641-71969660 | MS.gene77467:intron | 40.0% |
| !! | GAAAAGAGTATCAATGCAGG+AGG | - | chr3.2:71969090-71969109 | None:intergenic | 40.0% |
| !! | GCATGTTTAAGTTGCCGTTT+CGG | - | chr3.2:71968398-71968417 | None:intergenic | 40.0% |
| ACTAATCCTGCAATTCTCGG+AGG | - | chr3.2:71970191-71970210 | None:intergenic | 45.0% | |
| AGAAGGCTATAGAGGAGTTC+AGG | - | chr3.2:71969508-71969527 | None:intergenic | 45.0% | |
| AGGCACAAGTCTGGAAAAAG+AGG | + | chr3.2:71970510-71970529 | MS.gene77467:CDS | 45.0% | |
| AGTTAAGCATCAGAGGTCAC+AGG | + | chr3.2:71969366-71969385 | MS.gene77467:intron | 45.0% | |
| CAGAGCAGTCACTAATCTCA+AGG | - | chr3.2:71968445-71968464 | None:intergenic | 45.0% | |
| CGACTAATGTCGAAGACCTA+TGG | - | chr3.2:71969451-71969470 | None:intergenic | 45.0% | |
| CTAATCCTGCAATTCTCGGA+GGG | - | chr3.2:71970190-71970209 | None:intergenic | 45.0% | |
| CTGACATTGTGAAGACAACC+TGG | + | chr3.2:71970408-71970427 | MS.gene77467:CDS | 45.0% | |
| GGATCCGATACCTGTTTGTT+CGG | + | chr3.2:71968296-71968315 | MS.gene77467:CDS | 45.0% | |
| GTGCCTGGAATGTTGTAACA+CGG | - | chr3.2:71970496-71970515 | None:intergenic | 45.0% | |
| TAATCCTGCAATTCTCGGAG+GGG | - | chr3.2:71970189-71970208 | None:intergenic | 45.0% | |
| TCAAACAGAGTAGAGCCTTG+TGG | + | chr3.2:71969546-71969565 | MS.gene77467:intron | 45.0% | |
| TTCGGTTCCAACTTCAGTTC+CGG | - | chr3.2:71968380-71968399 | None:intergenic | 45.0% | |
| ! | AAGGAGTACATGTAGCCACA+AGG | - | chr3.2:71969564-71969583 | None:intergenic | 45.0% |
| ! | CCGAGAATTGCAGGATTAGT+TGG | + | chr3.2:71970191-71970210 | MS.gene77467:intron | 45.0% |
| ! | TCTTTTTCCAGACTTGTGCC+TGG | - | chr3.2:71970511-71970530 | None:intergenic | 45.0% |
| AGCTGCGTTCGGTCATTAAC+AGG | - | chr3.2:71969683-71969702 | None:intergenic | 50.0% | |
| AGTGGTATCAGAGCTGCGTT+CGG | - | chr3.2:71969694-71969713 | None:intergenic | 50.0% | |
| ATACATACCACCAGGTCTCC+AGG | - | chr3.2:71970429-71970448 | None:intergenic | 50.0% | |
| ATATAGCGTGAGGGAGCTAG+TGG | + | chr3.2:71968650-71968669 | MS.gene77467:intron | 50.0% | |
| ATGACCTCAGACTCAGACAC+AGG | - | chr3.2:71970536-71970555 | None:intergenic | 50.0% | |
| CAACATTCCAGGCACAAGTC+TGG | + | chr3.2:71970501-71970520 | MS.gene77467:CDS | 50.0% | |
| CCTCTTTCATCGCAGCTATC+CGG | - | chr3.2:71968338-71968357 | None:intergenic | 50.0% | |
| CGGATAGCTGCGATGAAAGA+GGG | + | chr3.2:71968336-71968355 | MS.gene77467:CDS | 50.0% | |
| CTCTTTCATCGCAGCTATCC+GGG | - | chr3.2:71968337-71968356 | None:intergenic | 50.0% | |
| CTGCCGTGTTACAACATTCC+AGG | + | chr3.2:71970490-71970509 | MS.gene77467:CDS | 50.0% | |
| GACGCCGAACAAACAGGTAT+CGG | - | chr3.2:71968303-71968322 | None:intergenic | 50.0% | |
| GAGCTGTTTGTACTCAGCCA+TGG | - | chr3.2:71968564-71968583 | None:intergenic | 50.0% | |
| GCTGCGTTCGGTCATTAACA+GGG | - | chr3.2:71969682-71969701 | None:intergenic | 50.0% | |
| GTTGTAACACGGCAGCAGTT+GGG | - | chr3.2:71970485-71970504 | None:intergenic | 50.0% | |
| TCCAACTTCAGTTCCGGTTC+CGG | - | chr3.2:71968374-71968393 | None:intergenic | 50.0% | |
| TCTTTCATCGCAGCTATCCG+GGG | - | chr3.2:71968336-71968355 | None:intergenic | 50.0% | |
| TGTTGTAACACGGCAGCAGT+TGG | - | chr3.2:71970486-71970505 | None:intergenic | 50.0% | |
| !! | AAGAGGGAAGTGCCTGAAAC+CGG | + | chr3.2:71968352-71968371 | MS.gene77467:CDS | 50.0% |
| AAGACAACCTGGAGACCTGG+TGG | + | chr3.2:71970419-71970438 | MS.gene77467:CDS | 55.0% | |
| ACCGGAACCGGAACTGAAGT+TGG | + | chr3.2:71968370-71968389 | MS.gene77467:CDS | 55.0% | |
| ATCACCCCTCCGAGAATTGC+AGG | + | chr3.2:71970182-71970201 | MS.gene77467:intron | 55.0% | |
| CCGGATAGCTGCGATGAAAG+AGG | + | chr3.2:71968335-71968354 | MS.gene77467:CDS | 55.0% | |
| GAGTACAAACAGCTCCGTCG+CGG | + | chr3.2:71968569-71968588 | MS.gene77467:CDS | 55.0% | |
| GTGAAGACAACCTGGAGACC+TGG | + | chr3.2:71970416-71970435 | MS.gene77467:CDS | 55.0% | |
| TACGTACACTTAGGCCGCGA+CGG | - | chr3.2:71968586-71968605 | None:intergenic | 55.0% | |
| TCAGTTCCGGTTCCGGTTTC+AGG | - | chr3.2:71968367-71968386 | None:intergenic | 55.0% | |
| TCGGATGACGCCGAACAAAC+AGG | - | chr3.2:71968309-71968328 | None:intergenic | 55.0% | |
| ! | CGCAGCTCTGATACCACTGT+TGG | + | chr3.2:71969696-71969715 | MS.gene77467:intron | 55.0% |
| ! | CTTTAGAGGATCGGGCTGTC+AGG | + | chr3.2:71969479-71969498 | MS.gene77467:intron | 55.0% |
| ! | GAAGTGCCTGAAACCGGAAC+CGG | + | chr3.2:71968358-71968377 | MS.gene77467:CDS | 55.0% |
| AGCGTGAGGGAGCTAGTGGT+AGG | + | chr3.2:71968654-71968673 | MS.gene77467:intron | 60.0% | |
| GAGGCCTGTGTCTGAGTCTG+AGG | + | chr3.2:71970529-71970548 | MS.gene77467:CDS | 60.0% | |
| GTAACACGGCAGCAGTTGGG+AGG | - | chr3.2:71970482-71970501 | None:intergenic | 60.0% | |
| TCAACTCACTCCCCTCTGCG+AGG | + | chr3.2:71970253-71970272 | MS.gene77467:CDS | 60.0% | |
| ! | CGCAGAGGGGAGTGAGTTGA+AGG | - | chr3.2:71970253-71970272 | None:intergenic | 60.0% |
| ACCAACGCAGCCTCGCAGAG+GGG | - | chr3.2:71970266-71970285 | None:intergenic | 65.0% | |
| CACCAACGCAGCCTCGCAGA+GGG | - | chr3.2:71970267-71970286 | None:intergenic | 65.0% | |
| TCACCAACGCAGCCTCGCAG+AGG | - | chr3.2:71970268-71970287 | None:intergenic | 65.0% | |
| TCATCGCAGCTATCCGGGGC+AGG | - | chr3.2:71968332-71968351 | None:intergenic | 65.0% | |
| CGCAGCTATCCGGGGCAGGT+CGG | - | chr3.2:71968328-71968347 | None:intergenic | 70.0% | |
| TCCCCTCTGCGAGGCTGCGT+TGG | + | chr3.2:71970262-71970281 | MS.gene77467:CDS | 70.0% | |
| CGGCGTCATCCGACCTGCCC+CGG | + | chr3.2:71968316-71968335 | MS.gene77467:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 71968287 | 71970577 | 71968287 | ID=MS.gene77467 |
| chr3.2 | mRNA | 71968287 | 71970577 | 71968287 | ID=MS.gene77467.t1;Parent=MS.gene77467 |
| chr3.2 | exon | 71968287 | 71968596 | 71968287 | ID=MS.gene77467.t1.exon1;Parent=MS.gene77467.t1 |
| chr3.2 | CDS | 71968287 | 71968596 | 71968287 | ID=cds.MS.gene77467.t1;Parent=MS.gene77467.t1 |
| chr3.2 | exon | 71970204 | 71970311 | 71970204 | ID=MS.gene77467.t1.exon2;Parent=MS.gene77467.t1 |
| chr3.2 | CDS | 71970204 | 71970311 | 71970204 | ID=cds.MS.gene77467.t1;Parent=MS.gene77467.t1 |
| chr3.2 | exon | 71970402 | 71970577 | 71970402 | ID=MS.gene77467.t1.exon3;Parent=MS.gene77467.t1 |
| chr3.2 | CDS | 71970402 | 71970577 | 71970402 | ID=cds.MS.gene77467.t1;Parent=MS.gene77467.t1 |
| Gene Sequence |
| Protein sequence |
