AlfalfaGEDB | MS.gene78529

M. sativa cultivar XinJiangDaYe / MS.gene78529

KEGG: -
GO: GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78529.t1	ACJ83992.1	53.1	98	1	1	1	53	1	98	5.80E-15	90.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78529.t1	Q00423	44.8	96	10	1	1	53	1	96	3.0e-12	73.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78529.t1	B7FGW3	53.1	98	1	1	1	53	1	98	4.2e-15	90.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049251	MS.gene78529	0.803778	2.96E-49	-1.69E-46
MS.gene04985	MS.gene78529	0.807973	3.89E-50	-1.69E-46
MS.gene049989	MS.gene78529	0.820609	6.27E-53	-1.69E-46
MS.gene05124	MS.gene78529	0.806116	9.62E-50	-1.69E-46
MS.gene051914	MS.gene78529	0.842691	2.22E-58	-1.69E-46
MS.gene052308	MS.gene78529	0.853031	3.13E-61	-1.69E-46
MS.gene052367	MS.gene78529	0.815814	7.62E-52	-1.69E-46
MS.gene053173	MS.gene78529	0.886176	4.29E-72	-1.69E-46
MS.gene053348	MS.gene78529	0.862553	4.67E-64	-1.69E-46
MS.gene053416	MS.gene78529	0.824833	6.51E-54	-1.69E-46
MS.gene053417	MS.gene78529	0.822241	2.63E-53	-1.69E-46
MS.gene054551	MS.gene78529	0.891695	3.14E-74	-1.69E-46
MS.gene054552	MS.gene78529	0.824475	7.91E-54	-1.69E-46
MS.gene054593	MS.gene78529	0.875466	3.01E-68	-1.69E-46
MS.gene054633	MS.gene78529	0.848994	4.30E-60	-1.69E-46
MS.gene055308	MS.gene78529	0.826259	2.99E-54	-1.69E-46
MS.gene055578	MS.gene78529	0.828337	9.51E-55	-1.69E-46
MS.gene055957	MS.gene78529	0.822984	1.77E-53	-1.69E-46
MS.gene056041	MS.gene78529	0.851	1.18E-60	-1.69E-46
MS.gene05640	MS.gene78529	0.859737	3.36E-63	-1.69E-46
MS.gene056526	MS.gene78529	0.824069	9.86E-54	-1.69E-46
MS.gene056528	MS.gene78529	0.825213	5.30E-54	-1.69E-46
MS.gene05652	MS.gene78529	0.824371	8.37E-54	-1.69E-46
MS.gene056618	MS.gene78529	0.801267	9.76E-49	-1.69E-46
MS.gene057367	MS.gene78529	0.845029	5.24E-59	-1.69E-46
MS.gene057458	MS.gene78529	0.819019	1.45E-52	-1.69E-46
MS.gene058128	MS.gene78529	0.851522	8.40E-61	-1.69E-46
MS.gene058853	MS.gene78529	0.834423	3.02E-56	-1.69E-46
MS.gene059553	MS.gene78529	0.812602	3.90E-51	-1.69E-46
MS.gene060473	MS.gene78529	0.831552	1.57E-55	-1.69E-46
MS.gene060565	MS.gene78529	0.81745	3.28E-52	-1.69E-46
MS.gene06093	MS.gene78529	0.839588	1.45E-57	-1.69E-46
MS.gene061099	MS.gene78529	0.847122	1.41E-59	-1.69E-46
MS.gene061260	MS.gene78529	0.819478	1.14E-52	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78529.t1	MTR_5g078330	75.980	204	4	1	1	159	1	204	2.48e-95	274
MS.gene78529.t1	MTR_3g065570	47.407	135	45	5	18	149	64	175	1.37e-16	73.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78529.t1	AT1G14900	41.611	149	53	5	17	153	73	199	4.65e-17	75.1

Find 67 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGGGTCTTGGGAGGTGCATT+AGG	0.195810	5.1:-60624596	None:intergenic
TCAGTCCTTTGAACCTTCTT+TGG	0.198015	5.1:-60624653	None:intergenic
CCTCTCTTTGGTGGTGCATT+TGG	0.255109	5.1:-60624479	None:intergenic
CTTCCACTTGAAGCAGCCTT+AGG	0.283817	5.1:-60624617	None:intergenic
GGTGGAGCCAATGGATCTTT+TGG	0.315588	5.1:-60624521	None:intergenic
GGAGGTGCATTAGGGTCCTT+TGG	0.323687	5.1:-60624587	None:intergenic
GGTCTTCCACGTCCTCTCTT+TGG	0.323730	5.1:-60624491	None:intergenic
CTTAACCAGATGAAGGAAAA+TGG	0.327311	5.1:+60624416	MS.gene78529:intron
TTTGGTGGTGCATTTGGATC+AGG	0.346536	5.1:-60624473	None:intergenic
GGAGGACGACCTCTTGGCCT+TGG	0.354819	5.1:-60624566	None:intergenic
GGGTCTTGGGAGGTGCATTA+GGG	0.356682	5.1:-60624595	None:intergenic
TGAAGCAGCCTTAGGGGTCT+TGG	0.357314	5.1:-60624609	None:intergenic
TTCCACTTGAAGCAGCCTTA+GGG	0.394198	5.1:-60624616	None:intergenic
GACGACCTCTTGGCCTTGGT+GGG	0.404356	5.1:-60624562	None:intergenic
GGTGGAGATGGTGCTGGTGC+TGG	0.421708	5.1:+60624695	MS.gene78529:CDS
CTTCCCCTTCCACTAGTAGT+TGG	0.429832	5.1:-60624776	None:intergenic
GGACGACCTCTTGGCCTTGG+TGG	0.430385	5.1:-60624563	None:intergenic
GAAGCAGCCTTAGGGGTCTT+GGG	0.435245	5.1:-60624608	None:intergenic
TCCTTTGGAGGACGACCTCT+TGG	0.438783	5.1:-60624572	None:intergenic
GACAGAACAGCAGCTGGTGG+TGG	0.460682	5.1:-60624539	None:intergenic
ACTACTAGTGGAAGGGGAAG+GGG	0.460928	5.1:+60624779	MS.gene78529:CDS
GTCATCTGAGGCTTAACCTT+AGG	0.479453	5.1:-60624809	None:intergenic
AACTACTAGTGGAAGGGGAA+GGG	0.479852	5.1:+60624778	MS.gene78529:CDS
TGTGAATTTACCTCAGGGTA+TGG	0.486285	5.1:-60623896	None:intergenic
CTTCCACGTCCTCTCTTTGG+TGG	0.517078	5.1:-60624488	None:intergenic
GCAGCTGGTGGTGGAGCCAA+TGG	0.520984	5.1:-60624530	None:intergenic
GGGAAGGGGTAGGCCTCCTA+AGG	0.528357	5.1:+60624793	MS.gene78529:CDS
AAGGCTGCTTCAAGTGGAAG+AGG	0.531029	5.1:+60624620	MS.gene78529:CDS
ACCCCTAAGGCTGCTTCAAG+TGG	0.532524	5.1:+60624614	MS.gene78529:CDS
ACCAAAGCCAAAAGATCCAT+TGG	0.533769	5.1:+60624514	MS.gene78529:CDS
TCCACTTGAAGCAGCCTTAG+GGG	0.536454	5.1:-60624615	None:intergenic
ATCTGAGGCTTAACCTTAGG+AGG	0.537376	5.1:-60624806	None:intergenic
GCTTCAAGTGGAAGAGGAAG+GGG	0.550156	5.1:+60624626	MS.gene78529:CDS
GGTGGGGACAGAACAGCAGC+TGG	0.550403	5.1:-60624545	None:intergenic
TGCTTCAAGTGGAAGAGGAA+GGG	0.550902	5.1:+60624625	MS.gene78529:CDS
AGGAAGGGGTAGGCCAAAGA+AGG	0.551487	5.1:+60624640	MS.gene78529:CDS
ACAGCAACAGCAGCAACACT+TGG	0.556119	5.1:-60624752	None:intergenic
CAACTACTAGTGGAAGGGGA+AGG	0.556781	5.1:+60624777	MS.gene78529:CDS
GGTGCATTAGGGTCCTTTGG+AGG	0.557332	5.1:-60624584	None:intergenic
CCAGCACCATCTCCACCACT+TGG	0.561242	5.1:-60624689	None:intergenic
GGGTATGGAGGAAGTGAAAG+AGG	0.561822	5.1:-60623881	None:intergenic
CTGCTTCAAGTGGAAGAGGA+AGG	0.565034	5.1:+60624624	MS.gene78529:CDS
AGCTTCAATGGCTACTCAAG+AGG	0.565718	5.1:+60623850	None:intergenic
TGCACCTCCCAAGACCCCTA+AGG	0.569439	5.1:+60624601	MS.gene78529:CDS
CTGTTCCAACTACTAGTGGA+AGG	0.576494	5.1:+60624771	MS.gene78529:CDS
CTGCTGTTCTGTCCCCACCA+AGG	0.579342	5.1:+60624549	MS.gene78529:CDS
TGGTGCTGGTGCTTCTGCTG+AGG	0.584178	5.1:+60624709	MS.gene78529:CDS
GTTCCAACTACTAGTGGAAG+GGG	0.585748	5.1:+60624773	MS.gene78529:CDS
TCAAATCCAAGTGGTGGAGA+TGG	0.596389	5.1:+60624683	MS.gene78529:CDS
GTTGCTGTTCCAACTACTAG+TGG	0.598369	5.1:+60624767	MS.gene78529:CDS
ACGACCTCTTGGCCTTGGTG+GGG	0.598499	5.1:-60624561	None:intergenic
GCCAAGAGGTCGTCCTCCAA+AGG	0.600702	5.1:+60624571	MS.gene78529:CDS
GCACCACCAAAGAGAGGACG+TGG	0.602504	5.1:+60624485	MS.gene78529:CDS
CCAAGTGGTGGAGATGGTGC+TGG	0.603694	5.1:+60624689	MS.gene78529:CDS
AATGTTTCAAATCCAAGTGG+TGG	0.604254	5.1:+60624677	MS.gene78529:CDS
GGGGACAGAACAGCAGCTGG+TGG	0.609403	5.1:-60624542	None:intergenic
TGTTCCAACTACTAGTGGAA+GGG	0.611701	5.1:+60624772	MS.gene78529:CDS
GTAGGCCAAAGAAGGTTCAA+AGG	0.622028	5.1:+60624648	MS.gene78529:CDS
ACACTCACTTCAGTCATCTG+AGG	0.623459	5.1:-60624821	None:intergenic
GCAGCCTTAGGGGTCTTGGG+AGG	0.627198	5.1:-60624605	None:intergenic
GAATTTACCTCAGGGTATGG+AGG	0.638966	5.1:-60623893	None:intergenic
CCAAATGCACCACCAAAGAG+AGG	0.648545	5.1:+60624479	MS.gene78529:CDS
CTAGTGGAAGGGGAAGGGGT+AGG	0.654025	5.1:+60624783	MS.gene78529:CDS
CTGTCCCCACCAAGGCCAAG+AGG	0.676490	5.1:+60624557	MS.gene78529:CDS
TTCACTTCCTCCATACCCTG+AGG	0.676529	5.1:+60623886	MS.gene78529:CDS
GAGAATGTTTCAAATCCAAG+TGG	0.689463	5.1:+60624674	MS.gene78529:CDS
CAAGTGGAAGAGGAAGGGGT+AGG	0.697070	5.1:+60624630	MS.gene78529:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAATAAGGAATTTTTTTTTA+GGG	+	chr5.1:60624083-60624102	MS.gene78529:intron	10.0%
!!	TTCTTGAAAAAATAAGAAAA+GGG	-	chr5.1:60623942-60623961	None:intergenic	15.0%
!!	TTTCTTGAAAAAATAAGAAA+AGG	-	chr5.1:60623943-60623962	None:intergenic	15.0%
!!!	CAAATAAGGAATTTTTTTTT+AGG	+	chr5.1:60624082-60624101	MS.gene78529:intron	15.0%
!!	AAAATCATTCAACATGTTAA+TGG	-	chr5.1:60624195-60624214	None:intergenic	20.0%
!!	AAATCATTCAACATGTTAAT+GGG	-	chr5.1:60624194-60624213	None:intergenic	20.0%
!!	TCTTGAAAAAATAAGAAAAG+GGG	-	chr5.1:60623941-60623960	None:intergenic	20.0%
!!!	TTAACAATTTTTACTCACTT+GGG	+	chr5.1:60624012-60624031	MS.gene78529:intron	20.0%
!!!	TTTAACAATTTTTACTCACT+TGG	+	chr5.1:60624011-60624030	MS.gene78529:intron	20.0%
!	AACTACATAGAATCAATCTA+TGG	+	chr5.1:60624353-60624372	MS.gene78529:intron	25.0%
!!	GATTTTGTAGATGATTATGA+AGG	+	chr5.1:60624280-60624299	MS.gene78529:intron	25.0%
!!!	GCTGTTTTTGTAATCAAATA+AGG	+	chr5.1:60624068-60624087	MS.gene78529:intron	25.0%
!!!	TACAAAGACTTTTTTCTGTT+TGG	-	chr5.1:60624125-60624144	None:intergenic	25.0%
	AACAGCTCAAGATTACTATT+TGG	-	chr5.1:60624054-60624073	None:intergenic	30.0%
	AGTTGTTCTTTGCAAAAACA+AGG	-	chr5.1:60624445-60624464	None:intergenic	30.0%
	GATTTGCAAGAACAATTGAA+TGG	-	chr5.1:60624394-60624413	None:intergenic	30.0%
!	GTTGAATGATTTTCTCAACA+TGG	+	chr5.1:60624202-60624221	MS.gene78529:intron	30.0%
!	TCAAGATTACTATTTGGTGA+GGG	-	chr5.1:60624048-60624067	None:intergenic	30.0%
!!	GATGATTTGTTTGAACCATT+TGG	-	chr5.1:60624326-60624345	None:intergenic	30.0%
	AAATCACCTTAACCAGATGA+AGG	+	chr5.1:60624409-60624428	MS.gene78529:intron	35.0%
	AATGTTTCAAATCCAAGTGG+TGG	+	chr5.1:60624677-60624696	MS.gene78529:CDS	35.0%
	ATCTATGGTGAATTACCAGA+AGG	+	chr5.1:60624368-60624387	MS.gene78529:intron	35.0%
	CTTAACCAGATGAAGGAAAA+TGG	+	chr5.1:60624416-60624435	MS.gene78529:intron	35.0%
	GAGAATGTTTCAAATCCAAG+TGG	+	chr5.1:60624674-60624693	MS.gene78529:CDS	35.0%
!	AAAGGGGTGTATGTTGAATT+AGG	-	chr5.1:60623925-60623944	None:intergenic	35.0%
!	AAGGGGTGTATGTTGAATTA+GGG	-	chr5.1:60623924-60623943	None:intergenic	35.0%
!	CAAGATTACTATTTGGTGAG+GGG	-	chr5.1:60624047-60624066	None:intergenic	35.0%
!	CATTTTCCTTCATCTGGTTA+AGG	-	chr5.1:60624418-60624437	None:intergenic	35.0%
!	CTCAAGATTACTATTTGGTG+AGG	-	chr5.1:60624049-60624068	None:intergenic	35.0%
	ACCAAAGCCAAAAGATCCAT+TGG	+	chr5.1:60624514-60624533	MS.gene78529:CDS	40.0%
	AGAACAATTGAATGGCCTTC+TGG	-	chr5.1:60624386-60624405	None:intergenic	40.0%
	TCAGTCCTTTGAACCTTCTT+TGG	-	chr5.1:60624656-60624675	None:intergenic	40.0%
	TGTGAATTTACCTCAGGGTA+TGG	-	chr5.1:60623899-60623918	None:intergenic	40.0%
	TGTTCCAACTACTAGTGGAA+GGG	+	chr5.1:60624772-60624791	MS.gene78529:CDS	40.0%
!	AGGGGTGTATGTTGAATTAG+GGG	-	chr5.1:60623923-60623942	None:intergenic	40.0%
!	GTAGATGATTATGAAGGCAC+TGG	+	chr5.1:60624286-60624305	MS.gene78529:intron	40.0%
!!	GAAGCACTGAATGAACCAAA+TGG	+	chr5.1:60624308-60624327	MS.gene78529:intron	40.0%
!!!	AATGGATCTTTTGGCTTTGG+TGG	-	chr5.1:60624515-60624534	None:intergenic	40.0%
	AACTACTAGTGGAAGGGGAA+GGG	+	chr5.1:60624778-60624797	MS.gene78529:CDS	45.0%
	ACACTCACTTCAGTCATCTG+AGG	-	chr5.1:60624824-60624843	None:intergenic	45.0%
	CTGTTCCAACTACTAGTGGA+AGG	+	chr5.1:60624771-60624790	MS.gene78529:CDS	45.0%
	GAATTTACCTCAGGGTATGG+AGG	-	chr5.1:60623896-60623915	None:intergenic	45.0%
	GGGGTGTATGTTGAATTAGG+GGG	-	chr5.1:60623922-60623941	None:intergenic	45.0%
	GTAGGCCAAAGAAGGTTCAA+AGG	+	chr5.1:60624648-60624667	MS.gene78529:CDS	45.0%
	GTTCCAACTACTAGTGGAAG+GGG	+	chr5.1:60624773-60624792	MS.gene78529:CDS	45.0%
	TGCTTCAAGTGGAAGAGGAA+GGG	+	chr5.1:60624625-60624644	MS.gene78529:CDS	45.0%
	TTCCACTTGAAGCAGCCTTA+GGG	-	chr5.1:60624619-60624638	None:intergenic	45.0%
!	ATCTGAGGCTTAACCTTAGG+AGG	-	chr5.1:60624809-60624828	None:intergenic	45.0%
!	GGTCACCATTTTCCTTCATC+TGG	-	chr5.1:60624424-60624443	None:intergenic	45.0%
!	GTCATCTGAGGCTTAACCTT+AGG	-	chr5.1:60624812-60624831	None:intergenic	45.0%
!	GTTGCTGTTCCAACTACTAG+TGG	+	chr5.1:60624767-60624786	MS.gene78529:CDS	45.0%
!	TCAAATCCAAGTGGTGGAGA+TGG	+	chr5.1:60624683-60624702	MS.gene78529:CDS	45.0%
!!	TTTGGTGGTGCATTTGGATC+AGG	-	chr5.1:60624476-60624495	None:intergenic	45.0%
!!!	GCCAATGGATCTTTTGGCTT+TGG	-	chr5.1:60624518-60624537	None:intergenic	45.0%
	AAGGCTGCTTCAAGTGGAAG+AGG	+	chr5.1:60624620-60624639	MS.gene78529:CDS	50.0%
	ACAGCAACAGCAGCAACACT+TGG	-	chr5.1:60624755-60624774	None:intergenic	50.0%
	ACTACTAGTGGAAGGGGAAG+GGG	+	chr5.1:60624779-60624798	MS.gene78529:CDS	50.0%
	CAACTACTAGTGGAAGGGGA+AGG	+	chr5.1:60624777-60624796	MS.gene78529:CDS	50.0%
	CCAAATGCACCACCAAAGAG+AGG	+	chr5.1:60624479-60624498	MS.gene78529:CDS	50.0%
	CTGCTTCAAGTGGAAGAGGA+AGG	+	chr5.1:60624624-60624643	MS.gene78529:CDS	50.0%
	CTTCCACTTGAAGCAGCCTT+AGG	-	chr5.1:60624620-60624639	None:intergenic	50.0%
	CTTCCCCTTCCACTAGTAGT+TGG	-	chr5.1:60624779-60624798	None:intergenic	50.0%
	GCTTCAAGTGGAAGAGGAAG+GGG	+	chr5.1:60624626-60624645	MS.gene78529:CDS	50.0%
	GGGTATGGAGGAAGTGAAAG+AGG	-	chr5.1:60623884-60623903	None:intergenic	50.0%
	TCCACTTGAAGCAGCCTTAG+GGG	-	chr5.1:60624618-60624637	None:intergenic	50.0%
	TTCACTTCCTCCATACCCTG+AGG	+	chr5.1:60623886-60623905	MS.gene78529:CDS	50.0%
!	AGGGGGTGTGAATTTACCTC+AGG	-	chr5.1:60623905-60623924	None:intergenic	50.0%
!	GGGGGTGTGAATTTACCTCA+GGG	-	chr5.1:60623904-60623923	None:intergenic	50.0%
!	GGTGGAGCCAATGGATCTTT+TGG	-	chr5.1:60624524-60624543	None:intergenic	50.0%
!!	CCTCTCTTTGGTGGTGCATT+TGG	-	chr5.1:60624482-60624501	None:intergenic	50.0%
	ACCCCTAAGGCTGCTTCAAG+TGG	+	chr5.1:60624614-60624633	MS.gene78529:CDS	55.0%
	AGGAAGGGGTAGGCCAAAGA+AGG	+	chr5.1:60624640-60624659	MS.gene78529:CDS	55.0%
	CAAGTGGAAGAGGAAGGGGT+AGG	+	chr5.1:60624630-60624649	MS.gene78529:CDS	55.0%
	CTTCCACGTCCTCTCTTTGG+TGG	-	chr5.1:60624491-60624510	None:intergenic	55.0%
	GAAGCAGCCTTAGGGGTCTT+GGG	-	chr5.1:60624611-60624630	None:intergenic	55.0%
	GGTCTTCCACGTCCTCTCTT+TGG	-	chr5.1:60624494-60624513	None:intergenic	55.0%
	GGTGCATTAGGGTCCTTTGG+AGG	-	chr5.1:60624587-60624606	None:intergenic	55.0%
	TGAAGCAGCCTTAGGGGTCT+TGG	-	chr5.1:60624612-60624631	None:intergenic	55.0%
!	GGAGGTGCATTAGGGTCCTT+TGG	-	chr5.1:60624590-60624609	None:intergenic	55.0%
!	GGGTCTTGGGAGGTGCATTA+GGG	-	chr5.1:60624598-60624617	None:intergenic	55.0%
!	TCCTTTGGAGGACGACCTCT+TGG	-	chr5.1:60624575-60624594	None:intergenic	55.0%
	CCAGCACCATCTCCACCACT+TGG	-	chr5.1:60624692-60624711	None:intergenic	60.0%
	CTAGTGGAAGGGGAAGGGGT+AGG	+	chr5.1:60624783-60624802	MS.gene78529:CDS	60.0%
	CTGCTGTTCTGTCCCCACCA+AGG	+	chr5.1:60624549-60624568	MS.gene78529:CDS	60.0%
	GACAGAACAGCAGCTGGTGG+TGG	-	chr5.1:60624542-60624561	None:intergenic	60.0%
	GCACCACCAAAGAGAGGACG+TGG	+	chr5.1:60624485-60624504	MS.gene78529:CDS	60.0%
	GCCAAGAGGTCGTCCTCCAA+AGG	+	chr5.1:60624571-60624590	MS.gene78529:CDS	60.0%
	TGCACCTCCCAAGACCCCTA+AGG	+	chr5.1:60624601-60624620	MS.gene78529:CDS	60.0%
!	CCAAGTGGTGGAGATGGTGC+TGG	+	chr5.1:60624689-60624708	MS.gene78529:CDS	60.0%
!	GGGGTCTTGGGAGGTGCATT+AGG	-	chr5.1:60624599-60624618	None:intergenic	60.0%
!!	ACGACCTCTTGGCCTTGGTG+GGG	-	chr5.1:60624564-60624583	None:intergenic	60.0%
!!	GACGACCTCTTGGCCTTGGT+GGG	-	chr5.1:60624565-60624584	None:intergenic	60.0%
!!	TGGTGCTGGTGCTTCTGCTG+AGG	+	chr5.1:60624709-60624728	MS.gene78529:CDS	60.0%
	CTGTCCCCACCAAGGCCAAG+AGG	+	chr5.1:60624557-60624576	MS.gene78529:CDS	65.0%
	GCAGCCTTAGGGGTCTTGGG+AGG	-	chr5.1:60624608-60624627	None:intergenic	65.0%
	GGAGGACGACCTCTTGGCCT+TGG	-	chr5.1:60624569-60624588	None:intergenic	65.0%
	GGGAAGGGGTAGGCCTCCTA+AGG	+	chr5.1:60624793-60624812	MS.gene78529:CDS	65.0%
	GGGGACAGAACAGCAGCTGG+TGG	-	chr5.1:60624545-60624564	None:intergenic	65.0%
	GGTGGGGACAGAACAGCAGC+TGG	-	chr5.1:60624548-60624567	None:intergenic	65.0%
!!	GCAGCTGGTGGTGGAGCCAA+TGG	-	chr5.1:60624533-60624552	None:intergenic	65.0%
!!	GGACGACCTCTTGGCCTTGG+TGG	-	chr5.1:60624566-60624585	None:intergenic	65.0%
!!	GGTGGAGATGGTGCTGGTGC+TGG	+	chr5.1:60624695-60624714	MS.gene78529:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	60623857	60624853	60623857	ID=MS.gene78529
chr5.1	mRNA	60623857	60624853	60623857	ID=MS.gene78529.t1;Parent=MS.gene78529
chr5.1	exon	60623857	60623907	60623857	ID=MS.gene78529.t1.exon1;Parent=MS.gene78529.t1
chr5.1	CDS	60623857	60623907	60623857	ID=cds.MS.gene78529.t1;Parent=MS.gene78529.t1
chr5.1	exon	60624425	60624853	60624425	ID=MS.gene78529.t1.exon2;Parent=MS.gene78529.t1
chr5.1	CDS	60624425	60624853	60624425	ID=cds.MS.gene78529.t1;Parent=MS.gene78529.t1

Gene Sequence

>MS.gene78529

ATGGCTACTCAAGAGGTTAATAAGCCTCTTTCACTTCCTCCATACCCTGAGGTAAATTCACACCCCCTAATTCAACATACACCCCTTTTCTTATTTTTTCAAGAAAATTAGTCTTTCATAGTAAAAGTAGCAATTTTTTCACTGATCTGTTTGATTTAACAATTTTTACTCACTTGGGTACTTTTTTCCCCTCACCAAATAGTAATCTTGAGCTGTTTTTGTAATCAAATAAGGAATTTTTTTTTAGGGTTTATGAAGAATTTAACCAAACAGAAAAAAGTCTTTGTATTAATTTCAGCTCAATTAATCTTGAAATTCTTTGTTTTTTCACTAACCCATTAACATGTTGAATGATTTTCTCAACATGGTATCTTCATTTCTGAAAAAAAATTTGATTTTTATTTTTATTTTAACTCTGTTGTTGATTTTGTAGATGATTATGAAGGCACTGGAAGCACTGAATGAACCAAATGGTTCAAACAAATCATCAATTTCAAACTACATAGAATCAATCTATGGTGAATTACCAGAAGGCCATTCAATTGTTCTTGCAAATCACCTTAACCAGATGAAGGAAAATGGTGACCTTGTTTTTGCAAAGAACAACTACATGAAGCCTGATCCAAATGCACCACCAAAGAGAGGACGTGGAAGACCACCAAAGCCAAAAGATCCATTGGCTCCACCACCAGCTGCTGTTCTGTCCCCACCAAGGCCAAGAGGTCGTCCTCCAAAGGACCCTAATGCACCTCCCAAGACCCCTAAGGCTGCTTCAAGTGGAAGAGGAAGGGGTAGGCCAAAGAAGGTTCAAAGGACTGAGAATGTTTCAAATCCAAGTGGTGGAGATGGTGCTGGTGCTGGTGCTTCTGCTGAGGTTGATGATGATGATGCTGCTCCAAGTGTTGCTGCTGTTGCTGTTCCAACTACTAGTGGAAGGGGAAGGGGTAGGCCTCCTAAGGTTAAGCCTCAGATGACTGAAGTGAGTGTTGAATCATAG

Protein sequence

>MS.gene78529.t1

MATQEVNKPLSLPPYPEMKENGDLVFAKNNYMKPDPNAPPKRGRGRPPKPKDPLAPPPAAVLSPPRPRGRPPKDPNAPPKTPKAASSGRGRGRPKKVQRTENVSNPSGGDGAGAGASAEVDDDDAAPSVAAVAVPTTSGRGRGRPPKVKPQMTEVSVES