Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78880.t1 | XP_003628043.1 | 89.9 | 208 | 21 | 0 | 1 | 208 | 234 | 441 | 5.70E-103 | 383.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78880.t1 | Q9FH97 | 43.1 | 209 | 112 | 5 | 1 | 208 | 230 | 432 | 8.4e-39 | 161.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78880.t1 | Q1S5L5 | 89.9 | 208 | 21 | 0 | 1 | 208 | 234 | 441 | 4.1e-103 | 383.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene78880 | 0.804382 | 2.22E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene78880 | 0.882628 | 8.88E-71 | -1.69E-46 |
| MS.gene05016 | MS.gene78880 | 0.828351 | 9.44E-55 | -1.69E-46 |
| MS.gene050438 | MS.gene78880 | 0.812736 | 3.65E-51 | -1.69E-46 |
| MS.gene050584 | MS.gene78880 | 0.80144 | 9.00E-49 | -1.69E-46 |
| MS.gene050586 | MS.gene78880 | 0.831131 | 1.99E-55 | -1.69E-46 |
| MS.gene050807 | MS.gene78880 | 0.85643 | 3.24E-62 | -1.69E-46 |
| MS.gene050808 | MS.gene78880 | 0.827898 | 1.21E-54 | -1.69E-46 |
| MS.gene051719 | MS.gene78880 | 0.801931 | 7.13E-49 | -1.69E-46 |
| MS.gene051789 | MS.gene78880 | 0.836082 | 1.15E-56 | -1.69E-46 |
| MS.gene052665 | MS.gene78880 | 0.828392 | 9.23E-55 | -1.69E-46 |
| MS.gene053074 | MS.gene78880 | 0.813521 | 2.45E-51 | -1.69E-46 |
| MS.gene053563 | MS.gene78880 | 0.807858 | 4.12E-50 | -1.69E-46 |
| MS.gene05456 | MS.gene78880 | 0.819655 | 1.04E-52 | -1.69E-46 |
| MS.gene055357 | MS.gene78880 | 0.807146 | 5.83E-50 | -1.69E-46 |
| MS.gene056069 | MS.gene78880 | -0.818544 | 1.86E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene78880 | 0.838455 | 2.85E-57 | -1.69E-46 |
| MS.gene059006 | MS.gene78880 | 0.812363 | 4.40E-51 | -1.69E-46 |
| MS.gene060137 | MS.gene78880 | -0.806563 | 7.74E-50 | -1.69E-46 |
| MS.gene060314 | MS.gene78880 | 0.815426 | 9.30E-52 | -1.69E-46 |
| MS.gene060470 | MS.gene78880 | 0.806038 | 9.99E-50 | -1.69E-46 |
| MS.gene060480 | MS.gene78880 | 0.816901 | 4.35E-52 | -1.69E-46 |
| MS.gene061176 | MS.gene78880 | 0.805225 | 1.48E-49 | -1.69E-46 |
| MS.gene061177 | MS.gene78880 | 0.804039 | 2.62E-49 | -1.69E-46 |
| MS.gene061178 | MS.gene78880 | 0.804826 | 1.79E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78880.t1 | MTR_8g041770 | 89.904 | 208 | 21 | 0 | 1 | 208 | 234 | 441 | 4.30e-136 | 389 |
| MS.gene78880.t1 | MTR_0190s0020 | 75.000 | 208 | 52 | 0 | 1 | 208 | 235 | 442 | 3.46e-111 | 325 |
| MS.gene78880.t1 | MTR_4g022825 | 62.500 | 208 | 75 | 2 | 1 | 207 | 234 | 439 | 2.06e-90 | 272 |
| MS.gene78880.t1 | MTR_3g088420 | 61.722 | 209 | 77 | 2 | 1 | 208 | 227 | 433 | 4.39e-89 | 268 |
| MS.gene78880.t1 | MTR_4g022720 | 62.201 | 209 | 76 | 2 | 1 | 208 | 229 | 435 | 9.10e-89 | 268 |
| MS.gene78880.t1 | MTR_4g022800 | 62.381 | 210 | 75 | 2 | 1 | 208 | 235 | 442 | 1.85e-88 | 267 |
| MS.gene78880.t1 | MTR_8g040780 | 60.680 | 206 | 78 | 2 | 1 | 203 | 22 | 227 | 2.04e-87 | 258 |
| MS.gene78880.t1 | MTR_4g022670 | 60.766 | 209 | 79 | 2 | 1 | 208 | 235 | 441 | 2.17e-87 | 265 |
| MS.gene78880.t1 | MTR_3g026310 | 58.294 | 211 | 83 | 2 | 1 | 208 | 240 | 448 | 1.39e-85 | 260 |
| MS.gene78880.t1 | MTR_4g094835 | 60.287 | 209 | 77 | 3 | 1 | 204 | 235 | 442 | 2.16e-85 | 259 |
| MS.gene78880.t1 | MTR_4g094832 | 60.287 | 209 | 77 | 3 | 1 | 204 | 219 | 426 | 1.80e-84 | 256 |
| MS.gene78880.t1 | MTR_7g026860 | 60.096 | 208 | 79 | 2 | 1 | 208 | 235 | 438 | 4.87e-83 | 253 |
| MS.gene78880.t1 | MTR_4g094842 | 56.311 | 206 | 90 | 0 | 1 | 206 | 241 | 446 | 1.85e-81 | 249 |
| MS.gene78880.t1 | MTR_4g094838 | 58.373 | 209 | 81 | 3 | 1 | 204 | 221 | 428 | 8.65e-81 | 247 |
| MS.gene78880.t1 | MTR_4g094828 | 49.309 | 217 | 100 | 5 | 1 | 208 | 235 | 450 | 7.48e-63 | 201 |
| MS.gene78880.t1 | MTR_4g022760 | 49.038 | 208 | 61 | 1 | 1 | 208 | 235 | 397 | 6.03e-62 | 198 |
| MS.gene78880.t1 | MTR_8g079710 | 49.282 | 209 | 96 | 5 | 1 | 199 | 228 | 436 | 4.42e-59 | 192 |
| MS.gene78880.t1 | MTR_4g022290 | 46.789 | 218 | 103 | 5 | 1 | 206 | 227 | 443 | 7.02e-54 | 178 |
| MS.gene78880.t1 | MTR_4g094825 | 52.980 | 151 | 59 | 2 | 55 | 204 | 248 | 387 | 8.91e-48 | 161 |
| MS.gene78880.t1 | MTR_3g101900 | 40.191 | 209 | 122 | 3 | 2 | 208 | 241 | 448 | 2.85e-46 | 158 |
| MS.gene78880.t1 | MTR_6g016815 | 43.750 | 208 | 55 | 4 | 1 | 208 | 236 | 381 | 2.58e-45 | 154 |
| MS.gene78880.t1 | MTR_3g102020 | 40.097 | 207 | 121 | 3 | 1 | 205 | 243 | 448 | 5.93e-45 | 155 |
| MS.gene78880.t1 | MTR_3g101930 | 38.942 | 208 | 125 | 2 | 1 | 207 | 248 | 454 | 2.82e-44 | 153 |
| MS.gene78880.t1 | MTR_3g101970 | 38.278 | 209 | 126 | 3 | 1 | 207 | 229 | 436 | 4.68e-42 | 147 |
| MS.gene78880.t1 | MTR_3g101960 | 39.024 | 205 | 122 | 3 | 1 | 203 | 242 | 445 | 1.17e-41 | 146 |
| MS.gene78880.t1 | MTR_3g102010 | 39.048 | 210 | 125 | 3 | 1 | 208 | 243 | 451 | 2.20e-41 | 145 |
| MS.gene78880.t1 | MTR_6g034485 | 69.767 | 86 | 26 | 0 | 1 | 86 | 40 | 125 | 1.78e-38 | 129 |
| MS.gene78880.t1 | MTR_7g026770 | 56.731 | 104 | 45 | 0 | 1 | 104 | 198 | 301 | 1.44e-33 | 122 |
| MS.gene78880.t1 | MTR_5g081960 | 34.536 | 194 | 125 | 2 | 16 | 208 | 294 | 486 | 3.42e-33 | 124 |
| MS.gene78880.t1 | MTR_4g015180 | 36.216 | 185 | 116 | 2 | 25 | 208 | 304 | 487 | 7.24e-32 | 120 |
| MS.gene78880.t1 | MTR_3g070170 | 34.783 | 184 | 118 | 2 | 22 | 204 | 284 | 466 | 5.11e-30 | 115 |
| MS.gene78880.t1 | MTR_6g045553 | 31.731 | 208 | 137 | 3 | 1 | 204 | 265 | 471 | 1.09e-27 | 108 |
| MS.gene78880.t1 | MTR_7g026780 | 46.847 | 111 | 34 | 2 | 98 | 208 | 26 | 111 | 1.21e-24 | 93.6 |
| MS.gene78880.t1 | MTR_3g102030 | 33.129 | 163 | 90 | 3 | 1 | 162 | 176 | 320 | 2.02e-21 | 90.1 |
| MS.gene78880.t1 | MTR_7g026870 | 54.286 | 70 | 27 | 1 | 53 | 117 | 82 | 151 | 6.55e-18 | 77.4 |
| MS.gene78880.t1 | MTR_4g007540 | 25.126 | 199 | 144 | 3 | 1 | 195 | 227 | 424 | 2.38e-17 | 79.7 |
| MS.gene78880.t1 | MTR_8g075610 | 24.631 | 203 | 138 | 3 | 1 | 195 | 216 | 411 | 7.58e-16 | 75.5 |
| MS.gene78880.t1 | MTR_2g064495 | 24.242 | 198 | 147 | 2 | 1 | 195 | 226 | 423 | 2.99e-15 | 73.9 |
| MS.gene78880.t1 | MTR_2g105330 | 24.242 | 198 | 147 | 2 | 1 | 195 | 226 | 423 | 6.63e-15 | 72.8 |
| MS.gene78880.t1 | MTR_4g127650 | 23.364 | 214 | 146 | 3 | 1 | 197 | 236 | 448 | 2.53e-14 | 71.2 |
| MS.gene78880.t1 | MTR_3g026950 | 26.941 | 219 | 122 | 7 | 1 | 192 | 229 | 436 | 5.70e-14 | 70.1 |
| MS.gene78880.t1 | MTR_3g049150 | 25.000 | 212 | 125 | 6 | 1 | 189 | 229 | 429 | 1.59e-13 | 68.9 |
| MS.gene78880.t1 | MTR_3g098980 | 25.532 | 188 | 133 | 3 | 2 | 189 | 238 | 418 | 1.87e-13 | 68.6 |
| MS.gene78880.t1 | MTR_3g049140 | 24.519 | 208 | 136 | 7 | 1 | 192 | 27 | 229 | 2.63e-13 | 67.0 |
| MS.gene78880.t1 | MTR_7g026880 | 55.556 | 54 | 22 | 1 | 155 | 208 | 2 | 53 | 6.42e-13 | 61.6 |
| MS.gene78880.t1 | MTR_4g097090 | 25.728 | 206 | 135 | 6 | 1 | 189 | 236 | 440 | 9.15e-12 | 63.5 |
| MS.gene78880.t1 | MTR_6g015320 | 25.500 | 200 | 138 | 5 | 1 | 195 | 251 | 444 | 1.29e-11 | 63.2 |
| MS.gene78880.t1 | MTR_8g096530 | 27.848 | 158 | 105 | 3 | 2 | 157 | 232 | 382 | 2.08e-11 | 62.8 |
| MS.gene78880.t1 | MTR_6g015315 | 24.883 | 213 | 130 | 8 | 1 | 198 | 248 | 445 | 3.04e-11 | 62.0 |
| MS.gene78880.t1 | MTR_6g015850 | 25.871 | 201 | 140 | 5 | 1 | 198 | 256 | 450 | 5.04e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78880.t1 | AT5G67150 | 41.429 | 210 | 119 | 3 | 1 | 208 | 239 | 446 | 6.03e-53 | 176 |
| MS.gene78880.t1 | AT3G50270 | 39.906 | 213 | 122 | 3 | 1 | 208 | 237 | 448 | 5.24e-48 | 163 |
| MS.gene78880.t1 | AT5G67160 | 43.062 | 209 | 112 | 5 | 1 | 208 | 230 | 432 | 1.25e-47 | 162 |
| MS.gene78880.t1 | AT3G50280 | 40.000 | 210 | 120 | 3 | 1 | 205 | 102 | 310 | 8.25e-47 | 156 |
| MS.gene78880.t1 | AT3G50300 | 43.590 | 195 | 104 | 3 | 1 | 190 | 232 | 425 | 4.28e-46 | 158 |
| MS.gene78880.t1 | AT3G50280 | 40.000 | 210 | 120 | 3 | 1 | 205 | 232 | 440 | 1.23e-45 | 157 |
| MS.gene78880.t1 | AT5G07860 | 40.670 | 209 | 119 | 4 | 1 | 207 | 243 | 448 | 3.08e-43 | 150 |
| MS.gene78880.t1 | AT5G42830 | 38.571 | 210 | 126 | 3 | 1 | 208 | 241 | 449 | 4.71e-41 | 145 |
| MS.gene78880.t1 | AT5G01210 | 33.469 | 245 | 125 | 4 | 1 | 208 | 226 | 469 | 7.14e-39 | 139 |
| MS.gene78880.t1 | AT5G07870 | 39.151 | 212 | 122 | 4 | 1 | 208 | 253 | 461 | 3.24e-38 | 137 |
| MS.gene78880.t1 | AT5G38130 | 40.206 | 194 | 110 | 3 | 1 | 189 | 250 | 442 | 1.57e-37 | 135 |
| MS.gene78880.t1 | AT3G50290 | 46.875 | 160 | 79 | 3 | 1 | 155 | 111 | 269 | 9.52e-37 | 129 |
| MS.gene78880.t1 | AT5G07850 | 38.532 | 218 | 116 | 7 | 1 | 208 | 244 | 453 | 1.51e-35 | 130 |
| MS.gene78880.t1 | AT2G39980 | 37.838 | 185 | 113 | 2 | 25 | 208 | 297 | 480 | 1.84e-34 | 127 |
| MS.gene78880.t1 | AT5G23940 | 31.250 | 208 | 138 | 3 | 1 | 204 | 242 | 448 | 6.06e-29 | 112 |
| MS.gene78880.t1 | AT5G48930 | 25.628 | 199 | 143 | 3 | 1 | 195 | 227 | 424 | 2.81e-16 | 76.6 |
| MS.gene78880.t1 | AT2G19070 | 28.302 | 212 | 135 | 5 | 1 | 197 | 234 | 443 | 8.73e-16 | 75.5 |
| MS.gene78880.t1 | AT3G29590 | 23.383 | 201 | 151 | 2 | 2 | 199 | 242 | 442 | 1.63e-12 | 65.9 |
| MS.gene78880.t1 | AT5G39090 | 29.208 | 202 | 116 | 9 | 2 | 190 | 243 | 430 | 3.75e-12 | 64.7 |
| MS.gene78880.t1 | AT5G61160 | 26.633 | 199 | 128 | 6 | 5 | 195 | 250 | 438 | 3.88e-12 | 64.7 |
| MS.gene78880.t1 | AT1G28680 | 27.950 | 161 | 108 | 4 | 2 | 160 | 235 | 389 | 6.50e-11 | 61.2 |
Find 43 sgRNAs with CRISPR-Local
Find 54 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACCCTGGTTTAATGTTTA+TGG | 0.116946 | 8.3:-56350293 | MS.gene78880:CDS |
| GGAAATATTTGTGTGTTTAA+AGG | 0.251922 | 8.3:-56350209 | MS.gene78880:CDS |
| TGGTAATGATCCTGAGTTTA+TGG | 0.261735 | 8.3:-56350126 | MS.gene78880:CDS |
| GGGAGTGAAAATAATGAAAA+TGG | 0.264658 | 8.3:-56350230 | MS.gene78880:CDS |
| CCATTGAAAGAGGATTATTT+TGG | 0.285934 | 8.3:-56350521 | MS.gene78880:CDS |
| AATGTTTATGGTAATGATTT+TGG | 0.340175 | 8.3:-56350281 | MS.gene78880:CDS |
| GTGCATTATGTGGTGGTTAT+AGG | 0.349094 | 8.3:-56350566 | MS.gene78880:CDS |
| AAAATTCAAAGCCAACTTAG+AGG | 0.353981 | 8.3:-56350681 | MS.gene78880:CDS |
| CCAAAATAATCCTCTTTCAA+TGG | 0.374389 | 8.3:+56350521 | None:intergenic |
| CAATTGCCTCCAAAGTTTCA+TGG | 0.386784 | 8.3:+56350147 | None:intergenic |
| TGGACTTGGTAAAGGTGCTT+TGG | 0.409489 | 8.3:-56350441 | MS.gene78880:CDS |
| CATGAAACTTTGGAGGCAAT+TGG | 0.418429 | 8.3:-56350146 | MS.gene78880:CDS |
| AGGTGTAGAAGATGGTAGTA+TGG | 0.424099 | 8.3:-56350189 | MS.gene78880:CDS |
| TTTGGTTGGGGAAAACCTGT+GGG | 0.472290 | 8.3:-56350263 | MS.gene78880:CDS |
| GTTGATTCCTCCATTGAAAG+AGG | 0.486725 | 8.3:-56350531 | MS.gene78880:CDS |
| CTTTGTACCAGCCTCTAAGT+TGG | 0.486862 | 8.3:+56350670 | None:intergenic |
| CATAATGCACTTCTTCTTGA+GGG | 0.502724 | 8.3:+56350579 | None:intergenic |
| CAAGACAATGGACTTGGTAA+AGG | 0.507284 | 8.3:-56350449 | MS.gene78880:CDS |
| TTCAAAGCCAACTTAGAGGC+TGG | 0.516313 | 8.3:-56350677 | MS.gene78880:CDS |
| GCACTTCTTCTTGAGGGTCA+AGG | 0.528530 | 8.3:+56350585 | None:intergenic |
| TTCAATGGAGGAATCAACCT+TGG | 0.531124 | 8.3:+56350536 | None:intergenic |
| AATTGCCTCCAAAGTTTCAT+GGG | 0.532415 | 8.3:+56350148 | None:intergenic |
| GTGTTTGTCCCATGAAACTT+TGG | 0.534872 | 8.3:-56350156 | MS.gene78880:CDS |
| GTACAATAGTAAAACATTAG+TGG | 0.537819 | 8.3:-56350324 | MS.gene78880:CDS |
| TACAATAGTAAAACATTAGT+GGG | 0.542055 | 8.3:-56350323 | MS.gene78880:CDS |
| TCCGTTGTTAGCATGAAAGT+TGG | 0.545219 | 8.3:-56350482 | MS.gene78880:CDS |
| ACATAATGCACTTCTTCTTG+AGG | 0.564314 | 8.3:+56350578 | None:intergenic |
| TTGGTTGGGGAAAACCTGTG+GGG | 0.567130 | 8.3:-56350262 | MS.gene78880:CDS |
| TGGTTGGGGAAAACCTGTGG+GGG | 0.578502 | 8.3:-56350261 | MS.gene78880:CDS |
| TTTGTCCCATGAAACTTTGG+AGG | 0.591981 | 8.3:-56350153 | MS.gene78880:CDS |
| AAATAATCCTCTTTCAATGG+AGG | 0.592205 | 8.3:+56350524 | None:intergenic |
| GTGTTTAAAGGTGTAGAAGA+TGG | 0.594759 | 8.3:-56350197 | MS.gene78880:CDS |
| TTGTTGCAAGACAATGGACT+TGG | 0.601437 | 8.3:-56350455 | MS.gene78880:CDS |
| ATACCAAGAGTAATAAAACT+AGG | 0.607573 | 8.3:+56350347 | None:intergenic |
| GGTGATTTGTTGCAAGACAA+TGG | 0.609643 | 8.3:-56350461 | MS.gene78880:CDS |
| TGGTTATAGGCGTTAGACCA+AGG | 0.625694 | 8.3:-56350553 | MS.gene78880:CDS |
| TCAAGAAGAAGTGCATTATG+TGG | 0.629418 | 8.3:-56350576 | MS.gene78880:CDS |
| GTCACAACATCCATAAACTC+AGG | 0.634083 | 8.3:+56350116 | None:intergenic |
| AGAAGAAGTGCATTATGTGG+TGG | 0.641210 | 8.3:-56350573 | MS.gene78880:CDS |
| TAGTGGGTAGTAGTTCACCC+TGG | 0.662355 | 8.3:-56350307 | MS.gene78880:CDS |
| ATTACCATAAACATTAAACC+AGG | 0.672703 | 8.3:+56350289 | None:intergenic |
| ACCAACTTTCATGCTAACAA+CGG | 0.674514 | 8.3:+56350481 | None:intergenic |
| TTACCATAAACATTAAACCA+GGG | 0.701842 | 8.3:+56350290 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAATAGTAAAACATTAGT+GGG | - | chr8.3:56350506-56350525 | MS.gene78880:CDS | 20.0% |
| !!! | AATGTTTATGGTAATGATTT+TGG | - | chr8.3:56350548-56350567 | MS.gene78880:CDS | 20.0% |
| ! | ATACCAAGAGTAATAAAACT+AGG | + | chr8.3:56350485-56350504 | None:intergenic | 25.0% |
| ! | ATTACCATAAACATTAAACC+AGG | + | chr8.3:56350543-56350562 | None:intergenic | 25.0% |
| ! | GGAAATATTTGTGTGTTTAA+AGG | - | chr8.3:56350620-56350639 | MS.gene78880:CDS | 25.0% |
| ! | GTACAATAGTAAAACATTAG+TGG | - | chr8.3:56350505-56350524 | MS.gene78880:CDS | 25.0% |
| ! | TTACCATAAACATTAAACCA+GGG | + | chr8.3:56350542-56350561 | None:intergenic | 25.0% |
| !!! | TTATGGTAATGATTTTGGTT+GGG | - | chr8.3:56350553-56350572 | MS.gene78880:CDS | 25.0% |
| !!! | TTTATGGTAATGATTTTGGT+TGG | - | chr8.3:56350552-56350571 | MS.gene78880:CDS | 25.0% |
| AAAATTCAAAGCCAACTTAG+AGG | - | chr8.3:56350148-56350167 | MS.gene78880:CDS | 30.0% | |
| AAATAATCCTCTTTCAATGG+AGG | + | chr8.3:56350308-56350327 | None:intergenic | 30.0% | |
| CCAAAATAATCCTCTTTCAA+TGG | + | chr8.3:56350311-56350330 | None:intergenic | 30.0% | |
| GGGAGTGAAAATAATGAAAA+TGG | - | chr8.3:56350599-56350618 | MS.gene78880:CDS | 30.0% | |
| TGAAAAATGACTATGAGAGT+TGG | - | chr8.3:56350450-56350469 | MS.gene78880:CDS | 30.0% | |
| ! | AAGCACTTTTCACACATATT+TGG | - | chr8.3:56350198-56350217 | MS.gene78880:CDS | 30.0% |
| ! | CCATTGAAAGAGGATTATTT+TGG | - | chr8.3:56350308-56350327 | MS.gene78880:CDS | 30.0% |
| !!! | ACACCTAGTTTTATTACTCT+TGG | - | chr8.3:56350479-56350498 | MS.gene78880:CDS | 30.0% |
| !!! | TATGGTAATGATTTTGGTTG+GGG | - | chr8.3:56350554-56350573 | MS.gene78880:CDS | 30.0% |
| AATTGCCTCCAAAGTTTCAT+GGG | + | chr8.3:56350684-56350703 | None:intergenic | 35.0% | |
| ACATAATGCACTTCTTCTTG+AGG | + | chr8.3:56350254-56350273 | None:intergenic | 35.0% | |
| ACCAACTTTCATGCTAACAA+CGG | + | chr8.3:56350351-56350370 | None:intergenic | 35.0% | |
| CATAATGCACTTCTTCTTGA+GGG | + | chr8.3:56350253-56350272 | None:intergenic | 35.0% | |
| TCACCCTGGTTTAATGTTTA+TGG | - | chr8.3:56350536-56350555 | MS.gene78880:CDS | 35.0% | |
| ! | GTGTTTAAAGGTGTAGAAGA+TGG | - | chr8.3:56350632-56350651 | MS.gene78880:CDS | 35.0% |
| ! | TCAAGAAGAAGTGCATTATG+TGG | - | chr8.3:56350253-56350272 | MS.gene78880:CDS | 35.0% |
| ! | TGGTAATGATCCTGAGTTTA+TGG | - | chr8.3:56350703-56350722 | MS.gene78880:CDS | 35.0% |
| AGGTGTAGAAGATGGTAGTA+TGG | - | chr8.3:56350640-56350659 | MS.gene78880:CDS | 40.0% | |
| CAATTGCCTCCAAAGTTTCA+TGG | + | chr8.3:56350685-56350704 | None:intergenic | 40.0% | |
| GTCACAACATCCATAAACTC+AGG | + | chr8.3:56350716-56350735 | None:intergenic | 40.0% | |
| GTGCATTATGTGGTGGTTAT+AGG | - | chr8.3:56350263-56350282 | MS.gene78880:CDS | 40.0% | |
| GTGTTTGTCCCATGAAACTT+TGG | - | chr8.3:56350673-56350692 | MS.gene78880:CDS | 40.0% | |
| TCCGTTGTTAGCATGAAAGT+TGG | - | chr8.3:56350347-56350366 | MS.gene78880:CDS | 40.0% | |
| TTCAATGGAGGAATCAACCT+TGG | + | chr8.3:56350296-56350315 | None:intergenic | 40.0% | |
| TTTGTCCCATGAAACTTTGG+AGG | - | chr8.3:56350676-56350695 | MS.gene78880:CDS | 40.0% | |
| ! | AGAAGAAGTGCATTATGTGG+TGG | - | chr8.3:56350256-56350275 | MS.gene78880:CDS | 40.0% |
| ! | CAAGACAATGGACTTGGTAA+AGG | - | chr8.3:56350380-56350399 | MS.gene78880:CDS | 40.0% |
| ! | CATGAAACTTTGGAGGCAAT+TGG | - | chr8.3:56350683-56350702 | MS.gene78880:CDS | 40.0% |
| ! | GTTGATTCCTCCATTGAAAG+AGG | - | chr8.3:56350298-56350317 | MS.gene78880:CDS | 40.0% |
| ! | TTCTTGAGGGTCAAGGTTTT+TGG | + | chr8.3:56350240-56350259 | None:intergenic | 40.0% |
| ! | TTGTTGCAAGACAATGGACT+TGG | - | chr8.3:56350374-56350393 | MS.gene78880:CDS | 40.0% |
| !! | GGTGATTTGTTGCAAGACAA+TGG | - | chr8.3:56350368-56350387 | MS.gene78880:CDS | 40.0% |
| CTTTGTACCAGCCTCTAAGT+TGG | + | chr8.3:56350162-56350181 | None:intergenic | 45.0% | |
| TGGTTATAGGCGTTAGACCA+AGG | - | chr8.3:56350276-56350295 | MS.gene78880:CDS | 45.0% | |
| TTCAAAGCCAACTTAGAGGC+TGG | - | chr8.3:56350152-56350171 | MS.gene78880:CDS | 45.0% | |
| TTTGGTTGGGGAAAACCTGT+GGG | - | chr8.3:56350566-56350585 | MS.gene78880:CDS | 45.0% | |
| !! | TGGACTTGGTAAAGGTGCTT+TGG | - | chr8.3:56350388-56350407 | MS.gene78880:CDS | 45.0% |
| !! | TTTTGGTTGGGGAAAACCTG+TGG | - | chr8.3:56350565-56350584 | MS.gene78880:CDS | 45.0% |
| GCACTTCTTCTTGAGGGTCA+AGG | + | chr8.3:56350247-56350266 | None:intergenic | 50.0% | |
| TTGGTTGGGGAAAACCTGTG+GGG | - | chr8.3:56350567-56350586 | MS.gene78880:CDS | 50.0% | |
| ! | TAGTGGGTAGTAGTTCACCC+TGG | - | chr8.3:56350522-56350541 | MS.gene78880:CDS | 50.0% |
| AAACCTGTGGGGGTTCGAAC+TGG | - | chr8.3:56350578-56350597 | MS.gene78880:CDS | 55.0% | |
| AACCTGTGGGGGTTCGAACT+GGG | - | chr8.3:56350579-56350598 | MS.gene78880:CDS | 55.0% | |
| TGGTTGGGGAAAACCTGTGG+GGG | - | chr8.3:56350568-56350587 | MS.gene78880:CDS | 55.0% | |
| CTCCCAGTTCGAACCCCCAC+AGG | + | chr8.3:56350584-56350603 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 56350113 | 56350738 | 56350113 | ID=MS.gene78880 |
| chr8.3 | mRNA | 56350113 | 56350738 | 56350113 | ID=MS.gene78880.t1;Parent=MS.gene78880 |
| chr8.3 | exon | 56350113 | 56350738 | 56350113 | ID=MS.gene78880.t1.exon1;Parent=MS.gene78880.t1 |
| chr8.3 | CDS | 56350113 | 56350738 | 56350113 | ID=cds.MS.gene78880.t1;Parent=MS.gene78880.t1 |
| Gene Sequence |
| Protein sequence |
