AlfalfaGEDB | MS.gene79439

M. sativa cultivar XinJiangDaYe / MS.gene79439

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF13041.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79439.t1	XP_013459094.1	92.9	268	19	0	1	268	1	268	2.20E-132	481.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79439.t1	Q2V3H0	68.4	228	68	1	45	268	50	277	6.2e-83	308.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79439.t1	A0A072UU22	92.9	268	19	0	1	268	1	268	1.6e-132	481.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049151	MS.gene79439	0.808701	2.72E-50	-1.69E-46
MS.gene049297	MS.gene79439	0.800239	1.58E-48	-1.69E-46
MS.gene049378	MS.gene79439	0.806113	9.63E-50	-1.69E-46
MS.gene049758	MS.gene79439	0.847105	1.43E-59	-1.69E-46
MS.gene049910	MS.gene79439	0.80104	1.09E-48	-1.69E-46
MS.gene050226	MS.gene79439	0.819547	1.10E-52	-1.69E-46
MS.gene050227	MS.gene79439	0.834785	2.45E-56	-1.69E-46
MS.gene050228	MS.gene79439	0.82657	2.52E-54	-1.69E-46
MS.gene050330	MS.gene79439	-0.832141	1.12E-55	-1.69E-46
MS.gene050438	MS.gene79439	0.8231	1.66E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79439.t1	MTR_3g024400	92.910	268	19	0	1	268	1	268	7.05e-174	482
MS.gene79439.t1	MTR_3g024400	76.119	268	16	1	1	268	1	220	8.17e-129	366
MS.gene79439.t1	MTR_6g053090	46.117	206	108	2	76	281	92	294	1.11e-52	176
MS.gene79439.t1	MTR_5g012120	43.871	155	86	1	101	254	5	159	1.95e-38	134
MS.gene79439.t1	MTR_5g012120	42.771	166	93	2	90	254	72	236	3.29e-38	136

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79439.t1	AT4G18975	62.308	260	87	3	20	268	18	277	2.05e-112	327
MS.gene79439.t1	AT4G18975	62.308	260	87	3	20	268	18	277	2.05e-112	327
MS.gene79439.t1	AT4G18975	62.308	260	87	3	20	268	18	277	2.05e-112	327
MS.gene79439.t1	AT4G18975	73.762	202	53	0	67	268	49	250	1.17e-111	324
MS.gene79439.t1	AT4G21190	42.925	212	113	2	76	286	45	249	1.68e-52	174
MS.gene79439.t1	AT1G04590	35.681	213	135	2	44	254	100	312	6.48e-36	133
MS.gene79439.t1	AT1G04590	35.648	216	134	3	44	254	100	315	2.10e-34	129

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Find 72 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCCTCTTTCTCATTA+GGG	0.352186	3.1:+15732241	None:intergenic
AAAGGACAAGGAGCAACAAT+GGG	0.484217	3.1:-15731412	MS.gene79439:CDS
AAATTGAGTCCGAATGTTGT+TGG	0.537190	3.1:-15734692	MS.gene79439:CDS
AAATTGGTAATCAAACGATA+TGG	0.420660	3.1:-15730773	MS.gene79439:CDS
AACATACGACACACTTCTTC+TGG	0.373920	3.1:-15731389	MS.gene79439:CDS
AACCTGATGAAGATACAGTC+AGG	0.560887	3.1:-15730841	MS.gene79439:CDS
AACTAGGCCAAGAAGAGAAA+AGG	0.461313	3.1:-15730796	MS.gene79439:CDS
AATATCTTCTTTGCCACAAG+TGG	0.521445	3.1:+15734529	None:intergenic
AATCAAAGGGTCGAGTGCAA+AGG	0.592567	3.1:-15730585	MS.gene79439:CDS
AATGAGAAAGAGGCTGTTTA+TGG	0.250949	3.1:-15732237	MS.gene79439:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGGAAGAAGAAAAAAG+GGG	-	chr3.1:15730970-15730989	MS.gene79439:intron	30.0%
AAAGTGATAGGAACAGATTT+AGG	-	chr3.1:15731706-15731725	MS.gene79439:intron	30.0%
AAATCTGTTCCTATCACTTT+AGG	+	chr3.1:15731706-15731725	None:intergenic	30.0%
AATCTTAGCACCTAAAAGAA+TGG	+	chr3.1:15732742-15732761	None:intergenic	30.0%
AATGTTAATCTTGCCTAGAT+TGG	-	chr3.1:15732291-15732310	MS.gene79439:intron	30.0%
AATTGTGGTCAAGATTCATT+GGG	+	chr3.1:15732634-15732653	None:intergenic	30.0%
ACTGTTTGATCAAGATCTAA+CGG	-	chr3.1:15734415-15734434	MS.gene79439:intron	30.0%
AGAAAAGGGAAGAAGAAAAA+AGG	-	chr3.1:15730968-15730987	MS.gene79439:intron	30.0%
AGTCTTCTGCATAATATTCT+CGG	+	chr3.1:15732801-15732820	None:intergenic	30.0%
ATAATTACGCCTAAAGTGAT+AGG	-	chr3.1:15731694-15731713	MS.gene79439:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	15730513	15735044	15730513	ID=MS.gene79439
chr3.1	mRNA	15730513	15735044	15730513	ID=MS.gene79439.t1;Parent=MS.gene79439
chr3.1	exon	15734985	15735044	15734985	ID=MS.gene79439.t1.exon1;Parent=MS.gene79439.t1
chr3.1	CDS	15734985	15735044	15734985	ID=cds.MS.gene79439.t1;Parent=MS.gene79439.t1
chr3.1	exon	15734840	15734887	15734840	ID=MS.gene79439.t1.exon2;Parent=MS.gene79439.t1
chr3.1	CDS	15734840	15734887	15734840	ID=cds.MS.gene79439.t1;Parent=MS.gene79439.t1
chr3.1	exon	15734671	15734747	15734671	ID=MS.gene79439.t1.exon3;Parent=MS.gene79439.t1
chr3.1	CDS	15734671	15734747	15734671	ID=cds.MS.gene79439.t1;Parent=MS.gene79439.t1
chr3.1	exon	15734488	15734587	15734488	ID=MS.gene79439.t1.exon4;Parent=MS.gene79439.t1
chr3.1	CDS	15734488	15734587	15734488	ID=cds.MS.gene79439.t1;Parent=MS.gene79439.t1
chr3.1	exon	15732131	15732274	15732131	ID=MS.gene79439.t1.exon5;Parent=MS.gene79439.t1
chr3.1	CDS	15732131	15732274	15732131	ID=cds.MS.gene79439.t1;Parent=MS.gene79439.t1
chr3.1	exon	15731243	15731455	15731243	ID=MS.gene79439.t1.exon6;Parent=MS.gene79439.t1
chr3.1	CDS	15731243	15731455	15731243	ID=cds.MS.gene79439.t1;Parent=MS.gene79439.t1
chr3.1	exon	15730736	15730894	15730736	ID=MS.gene79439.t1.exon7;Parent=MS.gene79439.t1
chr3.1	CDS	15730736	15730894	15730736	ID=cds.MS.gene79439.t1;Parent=MS.gene79439.t1
chr3.1	exon	15730513	15730626	15730513	ID=MS.gene79439.t1.exon8;Parent=MS.gene79439.t1
chr3.1	CDS	15730513	15730626	15730513	ID=cds.MS.gene79439.t1;Parent=MS.gene79439.t1

Gene Sequence

>MS.gene79439

ATGTGTATAACAATTGAAAGCTTAATTGTTTCCCCAATACTCCTACGAAGGACATGTTTGGTAACGTTGTTTTCTTCATCATTAGATTAATGAAAAAAAGTGATTATATCATACATTACACTGCAATTCATATCACCCTTATCTTCTTTTCTCGCAGACTAAACCGAATAAATTATTGTCATCTGCAATAAGTATCACTCCAAAGGTATAACAATTGCTTCAGAAAATAATATCATAAATAATTGAAGTTCATATTTTTAGCTTTGAAAAAATGAAATTTTATGTTTTTAATTGCAGACAAGTTGTAACTCCTGCAAAGTTGTCCGATCGAAATTGAGTCCGAATGTTGTTGGTGGTTCTGTTGAGAAGGATAAGTAGGTTATTGATTTGTTTTCTTTTTGTAAATTTGCTAATGTGTGTTTGGTTGTGTGAATAATCTGTTTTATGTGGAATGCAGAAAAGGGAAGAAGAAAAAAGGGGGTAAGATAGAACACCACTTGTGGCAAAGAAGATATTCAGCTCAGTCTGGCCAAAAGGCACTCACTCTTGTCAGAACTGTATGTTCATCTACGCATTTATTTTTTCATTTTTGTTCAAAATCTTCAGTTTGCCTAAGCTACATATTATAGTGTTAGGTAGTTATATTTTCTGTAATTTGTGTATGGAATTCAGAGATATGATCATACGAGGGAAAATTATGAAAGAGTTGTATACCCGGAAAAAACTGGACTCAAGTGCGAGTAAAGCTTTGGTGCGTCTTTCATTCCAAGCTGTGGAACCTCTACAAGGCCATACATGACTTTATTTGATTTTCATATAACTGTTTATGTTATGGCTCGAAAGTCTTTTGCTTAGACTTGTAGACCTATGTGATGAATAGACCAGTGAAAGGCGAAAGGAATAGAGTGAAATCATAGCTGCATTTTGGTGCTAAAAGATTAAGGCATGTAGTAAATAACAGTATAGGATATGTGGTTTAACTATACCAGAATTTGATATGGTCTGGAAAGGATGAATGGATTTTTCGGAAGGAGTTATAGGTGGTGAAGGAGGAGATTCATGAATAGAATAATCTGCCGTGGACAAAGCCAATGAGTTAGATGGCTGAAGAGACTCTACTCTAGACTTGATTGAGAGGGACTTGAGAGACCAGCTGGTTTGGCCAAGTTGACAAGGATGGAATAATTACGCCTAAAGTGATAGGAACAGATTTAGGATTATATATGGACTGCTGTTGGTTTCTAGCAGAATAAGGAAAACTGTGTTAATTAAAAACAGCGTCGTTAGATGTATAGATTCTGTCATATTAGTAGATATATTTTGTGCAAGGTCTAAACTTGCCCACAATATGTTTGAAGAGCCTTCTTTTACTGTTTAATCTTAGTTCAGCAGATGAATTAACTAACAATAACATGATTAAAAAGTTTCTGATTTGGGATGAAGACAATTAGTGTGTGTGGAGAATACTTTAACAAAAGTAACATGTATCCCCACAGGATTGTACCAGGAAGAGTCCATATTGATCTGATTCGCTGTTAAACAAATTTTGGTGATTGGCCTGACATTTGACAAAACATTTAGTAGAATGAAGTTCAGAATAGATAGCATTATCTTTAGAAGACTTACTTCGCACCAATGAGATTTTTAGTGATAGATAGACTAGAAGAAAATTCCAAAGAGAGAAGTGAGCATTAGAATGGAAAGAGGACAGTAAGGTTCTGCAAACAATAGATGTGAGTGGTGAACCTTAACCATTGAGTGGTTACAATTTGCAACAAAATGTTAATCTTGCCTAGATTGGTGGCATCCATGGGATGTTGTGGGTCACCTATAACACGATGACTTGCTCAAGAGTCATCATATCAGGGTCGAGTTGGTTGTGCAACGGAGTCAGTGACATGTGCCATTTGAGATGACTGGTGGGGCTGATGTGATCCTTGGCAAGGAACCAATCTTTGCTGATTCTGATGGAATAATGAATGTTAGGAATGACTGAAGACGAATAGCTGTATTCTAAAGCAGGACGAGTACAGAATTAATGTTGCTGCTGATGTTGGTAATCAGGGTTGAATCTGTTGCAACAGATTGAAGCATCACCACCCTATACCTGTGACTATGCCCAATGAATCTTGACCACAATTACCAGAGAAGTGGGTACCAATATTCTCCTTTAGTGTTTAACATCTTCCATCTGATACCTAAAGCCACCTGTACTGTTCGAGTGAACCATTCTTTTAGGTGCTAAGATTTATTTAATACAAGGATGGATTATAGCACCTTTGAGTCCGAGAATATTATGCAGAAGACTCAGAAAGCGGGCTTGCTTTGAAGGAATGACCCCAAAAAATTATTGAGTGGCCAGTGGGGTGGGAGGAGTTTATACATCACTAAGAGAGTTAGTTTTGGTTGCAGGATTTTAGGATGCATTCTAATAGCTTCCATGATGTTATGTGCTGCACTGTCGTGCTATTGTTATTAACTGGGTTTATTATTTGAATTGTGTGTTTCTGTTTTTTCCTTTTGCAATATATGCTTGAATGCTGTAATGTAAAAAAAGAGGAAGTATTATTCTCCAGTAAATTAGCTTTCTTTATATCTGGAGGTTACTTTTCCGGACTCAAATACAAGAAAATTGTAATTGTATATGTGCAATCCAAACCCTTATCAGGAGAACGTGTTGTTTTCTATTGAACTGTTTTTTATTTTAATATTTTGATCTTGCTATGTTGAGTTAATTTTGGATTGTCTATTGTGAATCTTGAAATGGCAGATCTGTGAACTCCCTAATGAGAAAGAGGCTGTTTATGGAGCGTTAGACAAATGGACGGCCTGGGAAATAGAGTTCCCATTGATTGCAGTAGCTAAGGCTTTAAAAATCTTAAGGAAAAGGGCTCAGTGGGTTCGTGTAATTCAAGTACGGTTGCCACTATTTTCTAGAACTTGTGTATCTTAAAGCTGAACACTTTCACCGACTTGTAAATGCCCAGGGCTATAAAATTACCTTCTCATGATATCTTTTTTCCGTACATTACATGTGGTGGAGCTTAAATGCCCAGGGCTATAAAATTACCTTCTCATAAAATGAATGATTGTTTGCTGGTAGAACTTTTAGCAAAGTAATCTGTATTAACGGACACTGTAATTTCTCAATCATGCTTTATTTATAACATATATGGTTTGAGGTGATACATAAACGATGAATGATCTTTAGCTCATACAAATGTTGTTTCAACTTTTATGGCTCCAGTTTGGATTTAAGTACTTATTATAAATATGAATCTTGAACTTAATTTTATGTATTTCTCATATCAACATGCTTTCATAATATTCCATCCATCAACATGAACATTGTTTAGTCCTTCTCAAGAATGCTATCGAGGTTGTGTTCAACTCATAAATATGCATGAGTTTTGACTTTTTTGGTTTTTCCAGATTTATCACACATCTTAGAATTGGAAAATTAAGAACACATATATATGAAATTCATGAATTCATGGTCTTATGTGAATAGTACCTCTGCTTTGTAACCTTGGTTAACTGTGAGGAATGGTTAGAATCTCATTGGTTATAAAATCTTTTATACTTTCAGTTAGCCAAGTGGATGTTGAGCAAAGGACAAGGAGCAACAATGGGAACATACGACACACTTCTTCTGGCATTTGATATGGAACAGAGAGTAGATGAGGCAGAATCCTTGTGGAATATGATTATACATGCCCACATGCGCTCTGTGTCTAAGAGACTGTTTTCTAGGATGATTTCAGTGTATGATCATCATGATCTGCCAGATAAAATTATAGAGGTATCTCTTTTATAGGAATGTAGAGGTATTTTTGGTAGTACAATTAATCTCAGTACATATTTGAACTCCCCGAGTGAAAATTCGCAGTCAAGCAATCCAGACTGTTTGATCAAGATCTAACGGCTCATGCTCTGGCTTGGAATATTAAATCTGATAAAAATTTGGAAGTGAGCCATTCGATCTTGATTTTTCGGTCTGCATTGTGTCATTGCAGCAAATGCATGACCCCCTGATTGCATGGAATCTAGATCTGTTCATCACACTACACTTTGACATGATTTTATTCAGCAAATCTGAATTTACTTTTCTATATGACTTGACATGTTGCTATCTTGTATGTAAGTTTAGGTATTTGCAGACATGGAAGAGTTGCGGGTAAAACCTGATGAAGATACAGTCAGGAAAGTGGCAAGGGCCTTTAGAAAACTAGGCCAAGAAGAGAAAAGGAAATTGGTAATCAAACGATATGGCCTTAAATGGAAGTATATTCACTTCAATGGTGAACGGGTGAGAGTTAGAACACATGCATGGGAAGACTAATTATGAATGACATTGAAATCGGTAAATATCAACAAAGATAACACTAAATCTTTATATCTTTGAAGCAATTGTCTAGTTGCATTCTGCCGTTGTTGAATCAAAGGGTCGAGTGCAAAGGATTAACAAGCTTTCGTTAAAGTTGAGTCGATTGGGAGTACCCGACTTCGTTTCCCGAGAACCAGAAGATTAA

Protein sequence

>MS.gene79439.t1

MCITIESLIVSPILLRRTCLTKPNKLLSSAISITPKTSCNSCKVVRSKLSPNVVGGSVEKDKKGKKKKGGKIEHHLWQRRYSAQSGQKALTLVRTICELPNEKEAVYGALDKWTAWEIEFPLIAVAKALKILRKRAQWVRVIQLAKWMLSKGQGATMGTYDTLLLAFDMEQRVDEAESLWNMIIHAHMRSVSKRLFSRMISVYDHHDLPDKIIEVFADMEELRVKPDEDTVRKVARAFRKLGQEEKRKLVIKRYGLKWKYIHFNGERLHSAVVESKGRVQRINKLSLKLSRLGVPDFVSREPED