Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057967.t1 | AES69158.1 | 89.9 | 129 | 12 | 1 | 1 | 128 | 1 | 129 | 7.20E-56 | 226.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057967.t1 | G7J1P4 | 89.9 | 129 | 12 | 1 | 1 | 128 | 1 | 129 | 5.2e-56 | 226.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene057967 | 0.81962 | 1.06E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene057967 | 0.812663 | 3.79E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene057967 | 0.800876 | 1.17E-48 | -1.69E-46 |
| MS.gene050227 | MS.gene057967 | 0.830513 | 2.82E-55 | -1.69E-46 |
| MS.gene050228 | MS.gene057967 | 0.82064 | 6.16E-53 | -1.69E-46 |
| MS.gene050438 | MS.gene057967 | 0.803027 | 4.24E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene057967 | 0.808775 | 2.62E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene057967 | -0.80427 | 2.34E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene057967 | 0.807971 | 3.90E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene057967 | 0.805973 | 1.03E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene057967 | 0.80762 | 4.62E-50 | -1.69E-46 |
| MS.gene050750 | MS.gene057967 | 0.810625 | 1.05E-50 | -1.69E-46 |
| MS.gene050820 | MS.gene057967 | 0.834985 | 2.18E-56 | -1.69E-46 |
| MS.gene050824 | MS.gene057967 | 0.800374 | 1.49E-48 | -1.69E-46 |
| MS.gene050953 | MS.gene057967 | 0.822456 | 2.35E-53 | -1.69E-46 |
| MS.gene052176 | MS.gene057967 | 0.836555 | 8.74E-57 | -1.69E-46 |
| MS.gene052302 | MS.gene057967 | 0.814163 | 1.77E-51 | -1.69E-46 |
| MS.gene052376 | MS.gene057967 | 0.830639 | 2.62E-55 | -1.69E-46 |
| MS.gene052858 | MS.gene057967 | 0.802028 | 6.81E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene057967 | 0.810798 | 9.64E-51 | -1.69E-46 |
| MS.gene054405 | MS.gene057967 | 0.816766 | 4.67E-52 | -1.69E-46 |
| MS.gene054930 | MS.gene057967 | 0.812502 | 4.11E-51 | -1.69E-46 |
| MS.gene054942 | MS.gene057967 | 0.826529 | 2.58E-54 | -1.69E-46 |
| MS.gene057967 | MS.gene057971 | 0.808942 | 2.42E-50 | -1.69E-46 |
| MS.gene057967 | MS.gene061040 | -0.822257 | 2.61E-53 | -1.69E-46 |
| MS.gene057967 | MS.gene061658 | -0.803529 | 3.34E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene063142 | 0.804409 | 2.19E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene06420 | 0.829758 | 4.30E-55 | -1.69E-46 |
| MS.gene057967 | MS.gene066269 | 0.802039 | 6.78E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene06705 | 0.808349 | 3.23E-50 | -1.69E-46 |
| MS.gene057967 | MS.gene067151 | 0.817856 | 2.65E-52 | -1.69E-46 |
| MS.gene057967 | MS.gene06922 | 0.814611 | 1.41E-51 | -1.69E-46 |
| MS.gene057967 | MS.gene070036 | 0.82246 | 2.34E-53 | -1.69E-46 |
| MS.gene057967 | MS.gene070899 | 0.812656 | 3.80E-51 | -1.69E-46 |
| MS.gene057967 | MS.gene07089 | 0.813121 | 3.00E-51 | -1.69E-46 |
| MS.gene057967 | MS.gene070901 | 0.802553 | 5.31E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene07115 | 0.848156 | 7.33E-60 | -1.69E-46 |
| MS.gene057967 | MS.gene071290 | 0.816515 | 5.31E-52 | -1.69E-46 |
| MS.gene057967 | MS.gene071438 | -0.82414 | 9.49E-54 | -1.69E-46 |
| MS.gene057967 | MS.gene071529 | 0.820136 | 8.04E-53 | -1.69E-46 |
| MS.gene057967 | MS.gene071711 | -0.805923 | 1.06E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene072624 | 0.816784 | 4.63E-52 | -1.69E-46 |
| MS.gene057967 | MS.gene072627 | 0.816693 | 4.85E-52 | -1.69E-46 |
| MS.gene057967 | MS.gene072630 | 0.816713 | 4.80E-52 | -1.69E-46 |
| MS.gene057967 | MS.gene072677 | 0.8167 | 4.83E-52 | -1.69E-46 |
| MS.gene057967 | MS.gene072955 | 0.804809 | 1.81E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene07368 | 0.817351 | 3.45E-52 | -1.69E-46 |
| MS.gene057967 | MS.gene073833 | 0.802924 | 4.45E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene074527 | 0.810382 | 1.19E-50 | -1.69E-46 |
| MS.gene057967 | MS.gene07536 | 0.812485 | 4.14E-51 | -1.69E-46 |
| MS.gene057967 | MS.gene09069 | 0.811707 | 6.12E-51 | -1.69E-46 |
| MS.gene057967 | MS.gene09136 | 0.826149 | 3.18E-54 | -1.69E-46 |
| MS.gene057967 | MS.gene09952 | 0.802318 | 5.94E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene20912 | 0.831703 | 1.44E-55 | -1.69E-46 |
| MS.gene057967 | MS.gene21149 | 0.804837 | 1.78E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene22311 | -0.805411 | 1.35E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene22689 | 0.801337 | 9.44E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene22691 | 0.835636 | 1.50E-56 | -1.69E-46 |
| MS.gene057967 | MS.gene24760 | -0.804152 | 2.48E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene28204 | 0.814382 | 1.59E-51 | -1.69E-46 |
| MS.gene057967 | MS.gene28498 | 0.808146 | 3.57E-50 | -1.69E-46 |
| MS.gene057967 | MS.gene28514 | 0.807656 | 4.54E-50 | -1.69E-46 |
| MS.gene057967 | MS.gene28922 | -0.806778 | 6.97E-50 | -1.69E-46 |
| MS.gene057967 | MS.gene29986 | 0.816799 | 4.59E-52 | -1.69E-46 |
| MS.gene057967 | MS.gene30855 | 0.804266 | 2.35E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene31116 | 0.815365 | 9.60E-52 | -1.69E-46 |
| MS.gene057967 | MS.gene31519 | 0.800106 | 1.68E-48 | -1.69E-46 |
| MS.gene057967 | MS.gene34085 | 0.862689 | 4.24E-64 | -1.69E-46 |
| MS.gene057967 | MS.gene35470 | 0.819506 | 1.12E-52 | -1.69E-46 |
| MS.gene057967 | MS.gene35909 | 0.801359 | 9.35E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene35910 | 0.802435 | 5.62E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene36120 | 0.809475 | 1.86E-50 | -1.69E-46 |
| MS.gene057967 | MS.gene48435 | 0.832742 | 7.95E-56 | -1.69E-46 |
| MS.gene057967 | MS.gene49003 | 0.802611 | 5.17E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene51549 | -0.812022 | 5.23E-51 | -1.69E-46 |
| MS.gene057967 | MS.gene51588 | 0.807178 | 5.74E-50 | -1.69E-46 |
| MS.gene057967 | MS.gene52059 | 0.821739 | 3.44E-53 | -1.69E-46 |
| MS.gene057967 | MS.gene52066 | 0.804154 | 2.48E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene53383 | 0.81458 | 1.43E-51 | -1.69E-46 |
| MS.gene057967 | MS.gene53875 | -0.80826 | 3.38E-50 | -1.69E-46 |
| MS.gene057967 | MS.gene56484 | 0.827401 | 1.60E-54 | -1.69E-46 |
| MS.gene057967 | MS.gene57160 | -0.803186 | 3.93E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene57162 | -0.808784 | 2.61E-50 | -1.69E-46 |
| MS.gene057967 | MS.gene59876 | 0.802125 | 6.51E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene60206 | 0.813714 | 2.23E-51 | -1.69E-46 |
| MS.gene057967 | MS.gene60781 | -0.807058 | 6.08E-50 | -1.69E-46 |
| MS.gene057967 | MS.gene61139 | 0.806443 | 8.21E-50 | -1.69E-46 |
| MS.gene057967 | MS.gene62587 | 0.803555 | 3.30E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene63288 | 0.80781 | 4.21E-50 | -1.69E-46 |
| MS.gene057967 | MS.gene63412 | 0.828612 | 8.16E-55 | -1.69E-46 |
| MS.gene057967 | MS.gene63507 | 0.823247 | 1.54E-53 | -1.69E-46 |
| MS.gene057967 | MS.gene64621 | 0.812721 | 3.68E-51 | -1.69E-46 |
| MS.gene057967 | MS.gene64645 | 0.81723 | 3.67E-52 | -1.69E-46 |
| MS.gene057967 | MS.gene67387 | 0.804823 | 1.80E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene68873 | 0.825923 | 3.60E-54 | -1.69E-46 |
| MS.gene057967 | MS.gene72128 | 0.805166 | 1.52E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene72130 | 0.812045 | 5.17E-51 | -1.69E-46 |
| MS.gene057967 | MS.gene73227 | 0.820255 | 7.56E-53 | -1.69E-46 |
| MS.gene057967 | MS.gene75069 | 0.815956 | 7.09E-52 | -1.69E-46 |
| MS.gene057967 | MS.gene75434 | 0.800711 | 1.27E-48 | -1.69E-46 |
| MS.gene057967 | MS.gene75619 | -0.832546 | 8.89E-56 | -1.69E-46 |
| MS.gene057967 | MS.gene76035 | 0.807979 | 3.88E-50 | -1.69E-46 |
| MS.gene057967 | MS.gene76356 | 0.802493 | 5.46E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene76497 | 0.802915 | 4.47E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene77584 | -0.81991 | 9.06E-53 | -1.69E-46 |
| MS.gene057967 | MS.gene78247 | 0.801419 | 9.08E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene79290 | 0.815418 | 9.34E-52 | -1.69E-46 |
| MS.gene057967 | MS.gene79439 | 0.805999 | 1.02E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene81029 | 0.804019 | 2.64E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene83154 | 0.805736 | 1.16E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene84086 | 0.84734 | 1.23E-59 | -1.69E-46 |
| MS.gene057967 | MS.gene84396 | 0.831525 | 1.59E-55 | -1.69E-46 |
| MS.gene057967 | MS.gene84404 | 0.802675 | 5.01E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene87115 | 0.807436 | 5.06E-50 | -1.69E-46 |
| MS.gene057967 | MS.gene87170 | 0.81547 | 9.10E-52 | -1.69E-46 |
| MS.gene057967 | MS.gene87377 | 0.821493 | 3.92E-53 | -1.69E-46 |
| MS.gene057967 | MS.gene87697 | 0.826712 | 2.33E-54 | -1.69E-46 |
| MS.gene057967 | MS.gene88831 | -0.81637 | 5.73E-52 | -1.69E-46 |
| MS.gene057967 | MS.gene92548 | 0.84524 | 4.60E-59 | -1.69E-46 |
| MS.gene057967 | MS.gene92763 | 0.808608 | 2.85E-50 | -1.69E-46 |
| MS.gene057967 | MS.gene93135 | 0.805176 | 1.51E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene93202 | 0.813187 | 2.91E-51 | -1.69E-46 |
| MS.gene057967 | MS.gene93457 | 0.80448 | 2.12E-49 | -1.69E-46 |
| MS.gene057967 | MS.gene96220 | 0.813247 | 2.82E-51 | -1.69E-46 |
| MS.gene057967 | MS.gene97157 | 0.812544 | 4.02E-51 | -1.69E-46 |
| MS.gene057967 | MS.gene97268 | 0.800227 | 1.59E-48 | -1.69E-46 |
| MS.gene057967 | MS.gene98277 | 0.81689 | 4.38E-52 | -1.69E-46 |
| MS.gene057967 | MS.gene99540 | 0.808108 | 3.64E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057967.t1 | MTR_3g023230 | 91.406 | 128 | 10 | 1 | 1 | 127 | 1 | 128 | 2.00e-68 | 206 |
| MS.gene057967.t1 | MTR_1g031730 | 70.435 | 115 | 28 | 4 | 15 | 127 | 17 | 127 | 5.46e-46 | 148 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTCTCCTTCAAGAAATA+AGG | 0.229085 | 3.4:+15159512 | None:intergenic |
| CATAAGAAATCACCATATTC+TGG | 0.250970 | 3.4:+15158667 | None:intergenic |
| GGAGGATGGGGACGGGGACG+GGG | 0.296065 | 3.4:-15160855 | MS.gene057967:CDS |
| AGGAGGATGGGGACGGGGAC+GGG | 0.311745 | 3.4:-15160856 | MS.gene057967:CDS |
| TGGGGACGGGGACGGGGAAG+AGG | 0.315697 | 3.4:-15160849 | MS.gene057967:CDS |
| CGTCAATGGAACCCAGAATA+TGG | 0.322177 | 3.4:-15158679 | MS.gene057967:CDS |
| TGTGTTAAGGAGTTGGTTCC+AGG | 0.329012 | 3.4:-15158870 | MS.gene057967:intron |
| CTATGAGACAGTTGCTTGAA+TGG | 0.378644 | 3.4:-15159568 | MS.gene057967:CDS |
| GGCAGAGGAGGATGGGGACG+GGG | 0.384213 | 3.4:-15160861 | MS.gene057967:CDS |
| TGGCAGAGGAGGATGGGGAC+GGG | 0.402946 | 3.4:-15160862 | MS.gene057967:CDS |
| GAGGAGGATGGGGACGGGGA+CGG | 0.418582 | 3.4:-15160857 | MS.gene057967:CDS |
| TATGAGACAGTTGCTTGAAT+GGG | 0.420424 | 3.4:-15159567 | MS.gene057967:CDS |
| TACTTGTGATTCTCTGCCAC+AGG | 0.426133 | 3.4:-15158910 | MS.gene057967:CDS |
| CGACGAATGTGTTAAGGAGT+TGG | 0.450423 | 3.4:-15158877 | MS.gene057967:CDS |
| GAAGGAGAAGGAAGAATTGA+AGG | 0.454002 | 3.4:-15159501 | MS.gene057967:CDS |
| AATGGCTGGCAGAGGAGGAT+GGG | 0.467693 | 3.4:-15160868 | MS.gene057967:CDS |
| AGTGGCTCCTTATTTCTTGA+AGG | 0.473271 | 3.4:-15159519 | MS.gene057967:CDS |
| CTGGCAGAGGAGGATGGGGA+CGG | 0.475505 | 3.4:-15160863 | MS.gene057967:CDS |
| CTTAATTGTCAGGGCGCAAA+AGG | 0.477030 | 3.4:-15158971 | MS.gene057967:intron |
| ATAAGAAATCACCATATTCT+GGG | 0.481958 | 3.4:+15158668 | None:intergenic |
| AAATGGCTGGCAGAGGAGGA+TGG | 0.482599 | 3.4:-15160869 | MS.gene057967:CDS |
| AAACTAAGCAGATGCTGAGC+GGG | 0.509589 | 3.4:-15158708 | MS.gene057967:CDS |
| ATGGCTGGCAGAGGAGGATG+GGG | 0.521277 | 3.4:-15160867 | MS.gene057967:CDS |
| TCCTTATTTCTTGAAGGAGA+AGG | 0.526141 | 3.4:-15159513 | MS.gene057967:CDS |
| AAGTAAATGGCTGGCAGAGG+AGG | 0.552160 | 3.4:-15160873 | None:intergenic |
| CGTAAGTAAATGGCTGGCAG+AGG | 0.553107 | 3.4:-15160876 | None:intergenic |
| AGACTTCGTAAGTAAATGGC+TGG | 0.562391 | 3.4:-15160882 | None:intergenic |
| AAGGAGAAGGAAGAATTGAA+GGG | 0.585858 | 3.4:-15159500 | MS.gene057967:intron |
| AAACTACAAATGGAACTGGT+CGG | 0.597411 | 3.4:+15160817 | None:intergenic |
| ATGAGACAGTTGCTTGAATG+GGG | 0.600528 | 3.4:-15159566 | MS.gene057967:CDS |
| GATTTACCTGATGTTAAACA+CGG | 0.617922 | 3.4:-15159605 | MS.gene057967:CDS |
| AAAACTAAGCAGATGCTGAG+CGG | 0.696411 | 3.4:-15158709 | MS.gene057967:CDS |
| TCGTCGAAAACTAAAACCTG+TGG | 0.697134 | 3.4:+15158894 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAATAGATAATTACA+AGG | + | chr3.4:15159869-15159888 | None:intergenic | 15.0% |
| !!! | CAAATAATTTAGAACTAAAT+TGG | - | chr3.4:15160779-15160798 | MS.gene057967:intron | 15.0% |
| !!! | TCTTCATCTAAAATTATAAA+TGG | - | chr3.4:15159734-15159753 | MS.gene057967:intron | 15.0% |
| !!! | TTTGTTTTAGAAAAATCTTA+AGG | + | chr3.4:15159077-15159096 | None:intergenic | 15.0% |
| !!! | TTTTGATAGATATTTTAAAG+TGG | - | chr3.4:15159996-15160015 | MS.gene057967:intron | 15.0% |
| !! | AAATATTCTCTTACCTTTAT+TGG | - | chr3.4:15159037-15159056 | MS.gene057967:intron | 20.0% |
| !! | AATAATGTAAACACATTTCA+TGG | + | chr3.4:15158820-15158839 | None:intergenic | 20.0% |
| !! | AATTATAAAACAAGATAGTG+TGG | - | chr3.4:15159013-15159032 | MS.gene057967:intron | 20.0% |
| !! | TCACAATATATATCATGTAA+AGG | + | chr3.4:15160073-15160092 | None:intergenic | 20.0% |
| !! | TTAAAGACATACAATAAGAT+GGG | - | chr3.4:15159435-15159454 | MS.gene057967:intron | 20.0% |
| !! | TTGATTTATTTAAGCTTATC+TGG | + | chr3.4:15159605-15159624 | None:intergenic | 20.0% |
| !!! | ATGTCTTTAGAAGATTATTA+CGG | - | chr3.4:15160315-15160334 | MS.gene057967:intron | 20.0% |
| !!! | GAAATGGTTATTTTTTTTTG+TGG | - | chr3.4:15160712-15160731 | MS.gene057967:intron | 20.0% |
| !!! | GAACTAAATTGGTAATAAAT+TGG | - | chr3.4:15160790-15160809 | MS.gene057967:intron | 20.0% |
| !!! | GAATATTTTCAATGCTTATA+TGG | - | chr3.4:15160495-15160514 | MS.gene057967:intron | 20.0% |
| !!! | GTTTCTTTTATAAACTATCA+TGG | - | chr3.4:15159385-15159404 | MS.gene057967:intron | 20.0% |
| ! | ACATGATATATATTGTGAGA+TGG | - | chr3.4:15160075-15160094 | MS.gene057967:intron | 25.0% |
| ! | ATAAGAAATCACCATATTCT+GGG | + | chr3.4:15160868-15160887 | None:intergenic | 25.0% |
| ! | CGTTAGACAATAATATATCA+TGG | + | chr3.4:15160381-15160400 | None:intergenic | 25.0% |
| ! | CTTAAAGACATACAATAAGA+TGG | - | chr3.4:15159434-15159453 | MS.gene057967:intron | 25.0% |
| ! | GTATGGAATTATAATACTGA+TGG | + | chr3.4:15159654-15159673 | None:intergenic | 25.0% |
| ! | TAAAGACATACAATAAGATG+GGG | - | chr3.4:15159436-15159455 | MS.gene057967:intron | 25.0% |
| ! | TATATTATGAATGACTCATG+TGG | - | chr3.4:15158905-15158924 | MS.gene057967:CDS | 25.0% |
| ! | TTCTCATATAAGGTATAAGT+TGG | - | chr3.4:15159117-15159136 | MS.gene057967:intron | 25.0% |
| !! | AATAATGGAATAGGATTTAC+GGG | - | chr3.4:15160690-15160709 | MS.gene057967:intron | 25.0% |
| !! | GAATAATGGAATAGGATTTA+CGG | - | chr3.4:15160689-15160708 | MS.gene057967:intron | 25.0% |
| !! | GGTAATAAATTGGTAATTTC+AGG | - | chr3.4:15160800-15160819 | MS.gene057967:intron | 25.0% |
| !! | GTCCTCTAAAAATTTGAATA+TGG | - | chr3.4:15160149-15160168 | MS.gene057967:intron | 25.0% |
| !!! | AGCCATATTCAAATTTTTAG+AGG | + | chr3.4:15160154-15160173 | None:intergenic | 25.0% |
| !!! | ATAATATTTTGGAATCTACG+TGG | - | chr3.4:15158843-15158862 | MS.gene057967:intron | 25.0% |
| !!! | GGTCAAATTTTAATCTTTGA+GGG | + | chr3.4:15160217-15160236 | None:intergenic | 25.0% |
| !!! | TGGTCAAATTTTAATCTTTG+AGG | + | chr3.4:15160218-15160237 | None:intergenic | 25.0% |
| !!! | TTTAGTGATAGTTTTGTATC+TGG | - | chr3.4:15160275-15160294 | MS.gene057967:intron | 25.0% |
| !!! | TTTTTTACGTCAACCAATAA+AGG | + | chr3.4:15159053-15159072 | None:intergenic | 25.0% |
| AATGTGGCTTTCAAATGATT+AGG | + | chr3.4:15160347-15160366 | None:intergenic | 30.0% | |
| ATAAGGAATGAAATACTTCC+TGG | - | chr3.4:15160426-15160445 | MS.gene057967:intron | 30.0% | |
| ATCATTTGAAAGCCACATTT+AGG | - | chr3.4:15160348-15160367 | MS.gene057967:intron | 30.0% | |
| ATGTGGCTTTCAAATGATTA+GGG | + | chr3.4:15160346-15160365 | None:intergenic | 30.0% | |
| ATTCGAACTGTTCTCATATA+AGG | - | chr3.4:15159107-15159126 | MS.gene057967:intron | 30.0% | |
| CAGAGAATCACAAGTAAAAA+TGG | + | chr3.4:15160619-15160638 | None:intergenic | 30.0% | |
| CAGATATTTAGGGACAAATA+TGG | + | chr3.4:15160523-15160542 | None:intergenic | 30.0% | |
| CATAAGAAATCACCATATTC+TGG | + | chr3.4:15160869-15160888 | None:intergenic | 30.0% | |
| CATATTTGTCCCTAAATATC+TGG | - | chr3.4:15160521-15160540 | MS.gene057967:intron | 30.0% | |
| CATGGAATAAATCCTAAATG+TGG | + | chr3.4:15160363-15160382 | None:intergenic | 30.0% | |
| GATTTACCTGATGTTAAACA+CGG | - | chr3.4:15159928-15159947 | MS.gene057967:intron | 30.0% | |
| GGAATTATAATACTGATGGA+TGG | + | chr3.4:15159650-15159669 | None:intergenic | 30.0% | |
| TCACCACTCTAATTCTAATT+TGG | + | chr3.4:15160238-15160257 | None:intergenic | 30.0% | |
| TGACAATTAAGCAAGAAAAG+CGG | + | chr3.4:15160553-15160572 | None:intergenic | 30.0% | |
| TGACCAAATTAGAATTAGAG+TGG | - | chr3.4:15160232-15160251 | MS.gene057967:intron | 30.0% | |
| TGATAAAGAAAACCGCAATT+TGG | - | chr3.4:15160127-15160146 | MS.gene057967:intron | 30.0% | |
| TGATGTTAAACACGGAAAAA+TGG | - | chr3.4:15159936-15159955 | MS.gene057967:intron | 30.0% | |
| ! | ATTTTTCCGTGTTTAACATC+AGG | + | chr3.4:15159937-15159956 | None:intergenic | 30.0% |
| ! | CTTTTCTTGCTTAATTGTCA+GGG | - | chr3.4:15160553-15160572 | MS.gene057967:intron | 30.0% |
| ! | GACTTTTCTTTATGCATTTG+AGG | - | chr3.4:15160746-15160765 | MS.gene057967:intron | 30.0% |
| ! | GGAATTCTGGAAAACAAATT+AGG | - | chr3.4:15158926-15158945 | MS.gene057967:CDS | 30.0% |
| ! | TCTTTAGAAGATTATTACGG+TGG | - | chr3.4:15160318-15160337 | MS.gene057967:intron | 30.0% |
| !! | ATAACACTTTGAGACTGTTT+GGG | + | chr3.4:15159578-15159597 | None:intergenic | 30.0% |
| !! | ATTTTTAGAGGACCAAATTG+CGG | + | chr3.4:15160142-15160161 | None:intergenic | 30.0% |
| AAACTACAAATGGAACTGGT+CGG | + | chr3.4:15158719-15158738 | None:intergenic | 35.0% | |
| AAGGAGAAGGAAGAATTGAA+GGG | - | chr3.4:15160033-15160052 | MS.gene057967:intron | 35.0% | |
| ACCTGTGGAAAAACTACAAA+TGG | + | chr3.4:15158729-15158748 | None:intergenic | 35.0% | |
| ATGAAGAATTGCATGCAATG+TGG | + | chr3.4:15159721-15159740 | None:intergenic | 35.0% | |
| ATGACTTGACGATACTCATA+AGG | - | chr3.4:15160409-15160428 | MS.gene057967:intron | 35.0% | |
| CCTATTCCATTATTCATACC+TGG | + | chr3.4:15160684-15160703 | None:intergenic | 35.0% | |
| CTTTATCAATCTGATGCTAC+AGG | - | chr3.4:15159900-15159919 | MS.gene057967:intron | 35.0% | |
| GACAATTAAGCAAGAAAAGC+GGG | + | chr3.4:15160552-15160571 | None:intergenic | 35.0% | |
| GGAAAAACTACAAATGGAAC+TGG | + | chr3.4:15158723-15158742 | None:intergenic | 35.0% | |
| TATGAGACAGTTGCTTGAAT+GGG | - | chr3.4:15159966-15159985 | MS.gene057967:intron | 35.0% | |
| TCCTTCTCCTTCAAGAAATA+AGG | + | chr3.4:15160024-15160043 | None:intergenic | 35.0% | |
| TTGGTTCCAGGTATGAATAA+TGG | - | chr3.4:15160675-15160694 | MS.gene057967:intron | 35.0% | |
| ! | AATACTGATGGATGGATAGA+AGG | + | chr3.4:15159642-15159661 | None:intergenic | 35.0% |
| ! | AGTGTGATGACAAGTTTTTG+TGG | + | chr3.4:15160191-15160210 | None:intergenic | 35.0% |
| ! | AGTTTTCGACGAATGTGTTA+AGG | - | chr3.4:15160650-15160669 | MS.gene057967:intron | 35.0% |
| ! | ATACAATAAGATGGGGTGTT+GGG | - | chr3.4:15159443-15159462 | MS.gene057967:intron | 35.0% |
| ! | CCAGGTATGAATAATGGAAT+AGG | - | chr3.4:15160681-15160700 | MS.gene057967:intron | 35.0% |
| ! | CTTTATGCATTTGAGGTTTC+TGG | - | chr3.4:15160753-15160772 | MS.gene057967:intron | 35.0% |
| ! | GCTTTTCTTGCTTAATTGTC+AGG | - | chr3.4:15160552-15160571 | MS.gene057967:intron | 35.0% |
| ! | GTGTGATGACAAGTTTTTGT+GGG | + | chr3.4:15160190-15160209 | None:intergenic | 35.0% |
| ! | TCCATTTGTAGTTTTTCCAC+AGG | - | chr3.4:15158725-15158744 | MS.gene057967:intron | 35.0% |
| ! | TCCTTATTTCTTGAAGGAGA+AGG | - | chr3.4:15160020-15160039 | MS.gene057967:intron | 35.0% |
| !! | CATAACACTTTGAGACTGTT+TGG | + | chr3.4:15159579-15159598 | None:intergenic | 35.0% |
| !! | GTATCTGGAAAGCATTGATT+TGG | - | chr3.4:15160290-15160309 | MS.gene057967:intron | 35.0% |
| AAAACTAAGCAGATGCTGAG+CGG | - | chr3.4:15160824-15160843 | MS.gene057967:CDS | 40.0% | |
| AAACCGACACTTCTGATAGA+AGG | - | chr3.4:15158771-15158790 | MS.gene057967:intron | 40.0% | |
| AAGCTATCACGTAGTGCTTA+TGG | - | chr3.4:15159147-15159166 | MS.gene057967:intron | 40.0% | |
| AATTAAGCAAGAAAAGCGGG+AGG | + | chr3.4:15160549-15160568 | None:intergenic | 40.0% | |
| ATAAGCTCGCACAAACAGTT+TGG | - | chr3.4:15159215-15159234 | MS.gene057967:intron | 40.0% | |
| ATGAGACAGTTGCTTGAATG+GGG | - | chr3.4:15159967-15159986 | MS.gene057967:intron | 40.0% | |
| CATACAATAAGATGGGGTGT+TGG | - | chr3.4:15159442-15159461 | MS.gene057967:intron | 40.0% | |
| CTATGAGACAGTTGCTTGAA+TGG | - | chr3.4:15159965-15159984 | MS.gene057967:intron | 40.0% | |
| GAAGGAAGAATTGAAGGGTA+TGG | - | chr3.4:15160038-15160057 | MS.gene057967:intron | 40.0% | |
| GAAGGAGAAGGAAGAATTGA+AGG | - | chr3.4:15160032-15160051 | MS.gene057967:intron | 40.0% | |
| GAATGACTCATGTGGAATTC+TGG | - | chr3.4:15158913-15158932 | MS.gene057967:CDS | 40.0% | |
| GGAATAGGATTTACGGGAAA+TGG | - | chr3.4:15160696-15160715 | MS.gene057967:intron | 40.0% | |
| GTAGTGCTTATGGTGATAAG+CGG | - | chr3.4:15159157-15159176 | MS.gene057967:intron | 40.0% | |
| TAGAGTGGTGACAATGACTT+TGG | - | chr3.4:15160247-15160266 | MS.gene057967:intron | 40.0% | |
| TATCCCTTAGCTCATACCAA+CGG | + | chr3.4:15159474-15159493 | None:intergenic | 40.0% | |
| TCGTCGAAAACTAAAACCTG+TGG | + | chr3.4:15160642-15160661 | None:intergenic | 40.0% | |
| TGCAGAGAACAGAGAATGTA+TGG | + | chr3.4:15159671-15159690 | None:intergenic | 40.0% | |
| TGTACATCTGCTCATATTCC+AGG | + | chr3.4:15160447-15160466 | None:intergenic | 40.0% | |
| TTGGTATGAGCTAAGGGATA+AGG | - | chr3.4:15159474-15159493 | MS.gene057967:intron | 40.0% | |
| ! | AGTGGCTCCTTATTTCTTGA+AGG | - | chr3.4:15160014-15160033 | MS.gene057967:intron | 40.0% |
| ! | GGATGGATAGAAGGTTTGTT+TGG | + | chr3.4:15159633-15159652 | None:intergenic | 40.0% |
| AAACTAAGCAGATGCTGAGC+GGG | - | chr3.4:15160825-15160844 | MS.gene057967:CDS | 45.0% | |
| ACATGACCATAGCGTTTGCT+TGG | + | chr3.4:15159280-15159299 | None:intergenic | 45.0% | |
| AGACTGTTTGGGAGAGCTTA+TGG | + | chr3.4:15159567-15159586 | None:intergenic | 45.0% | |
| AGTCTCTGGTTAAGCCATTG+AGG | - | chr3.4:15159695-15159714 | MS.gene057967:intron | 45.0% | |
| CAATGGCTTAACCAGAGACT+TGG | + | chr3.4:15159695-15159714 | None:intergenic | 45.0% | |
| CGACGAATGTGTTAAGGAGT+TGG | - | chr3.4:15160656-15160675 | MS.gene057967:intron | 45.0% | |
| CGTCAATGGAACCCAGAATA+TGG | - | chr3.4:15160854-15160873 | MS.gene057967:CDS | 45.0% | |
| CTTAATTGTCAGGGCGCAAA+AGG | - | chr3.4:15160562-15160581 | MS.gene057967:intron | 45.0% | |
| GAGTGTAGAGATGTTACCTG+TGG | + | chr3.4:15158744-15158763 | None:intergenic | 45.0% | |
| GTCCTGGGTTCAAACTCAAA+AGG | - | chr3.4:15159505-15159524 | MS.gene057967:CDS | 45.0% | |
| GTTAGTCCAAGCAAACGCTA+TGG | - | chr3.4:15159271-15159290 | MS.gene057967:intron | 45.0% | |
| TACTTGTGATTCTCTGCCAC+AGG | - | chr3.4:15160623-15160642 | MS.gene057967:intron | 45.0% | |
| TCAGAAGCTTGCAAGCAAGA+GGG | - | chr3.4:15159791-15159810 | MS.gene057967:intron | 45.0% | |
| TGAGCGGGAAAAAACGTCAA+TGG | - | chr3.4:15160840-15160859 | MS.gene057967:CDS | 45.0% | |
| TGAGCTAAGGGATAAGGAGT+TGG | - | chr3.4:15159480-15159499 | MS.gene057967:intron | 45.0% | |
| TTCAGAAGCTTGCAAGCAAG+AGG | - | chr3.4:15159790-15159809 | MS.gene057967:intron | 45.0% | |
| ! | ACGCCTTCTATCAGAAGTGT+CGG | + | chr3.4:15158777-15158796 | None:intergenic | 45.0% |
| ! | TGTGTTAAGGAGTTGGTTCC+AGG | - | chr3.4:15160663-15160682 | MS.gene057967:intron | 45.0% |
| !!! | GTCCTTTTGAGTTTGAACCC+AGG | + | chr3.4:15159510-15159529 | None:intergenic | 45.0% |
| !!! | ACATTATTTTAATAATATTT+TGG | - | chr3.4:15158832-15158851 | MS.gene057967:intron | 5.0% |
| AGCTCCGTTGGTATGAGCTA+AGG | - | chr3.4:15159467-15159486 | MS.gene057967:intron | 50.0% | |
| CGGGAGGAGCCAGATATTTA+GGG | + | chr3.4:15160533-15160552 | None:intergenic | 50.0% | |
| GATAAGGAGTTGGAGGTCCT+GGG | - | chr3.4:15159490-15159509 | MS.gene057967:intron | 50.0% | |
| GCAAACGCTATGGTCATGTC+TGG | - | chr3.4:15159281-15159300 | MS.gene057967:intron | 50.0% | |
| GCTAAGGGATAAGGAGTTGG+AGG | - | chr3.4:15159483-15159502 | MS.gene057967:intron | 50.0% | |
| GCTCCGTTGGTATGAGCTAA+GGG | - | chr3.4:15159468-15159487 | MS.gene057967:intron | 50.0% | |
| GTTCTCTGCAACCAAGTCTC+TGG | - | chr3.4:15159681-15159700 | MS.gene057967:intron | 50.0% | |
| TGCATGCAATGTGGCCTCAA+TGG | + | chr3.4:15159712-15159731 | None:intergenic | 50.0% | |
| GCGGGAGGAGCCAGATATTT+AGG | + | chr3.4:15160534-15160553 | None:intergenic | 55.0% | |
| GGATAAGGAGTTGGAGGTCC+TGG | - | chr3.4:15159489-15159508 | MS.gene057967:intron | 55.0% | |
| ATGGCTGGCAGAGGAGGATG+GGG | - | chr3.4:15158666-15158685 | MS.gene057967:CDS | 60.0% | |
| CTGGCAGAGGAGGATGGGGA+CGG | - | chr3.4:15158670-15158689 | MS.gene057967:CDS | 65.0% | |
| TGGCAGAGGAGGATGGGGAC+GGG | - | chr3.4:15158671-15158690 | MS.gene057967:CDS | 65.0% | |
| !! | GGGGTGTTGGGTAGCTCCGT+TGG | - | chr3.4:15159455-15159474 | MS.gene057967:intron | 65.0% |
| AGGAGGATGGGGACGGGGAC+GGG | - | chr3.4:15158677-15158696 | MS.gene057967:CDS | 70.0% | |
| GAGGAGGATGGGGACGGGGA+CGG | - | chr3.4:15158676-15158695 | MS.gene057967:CDS | 70.0% | |
| GGCAGAGGAGGATGGGGACG+GGG | - | chr3.4:15158672-15158691 | MS.gene057967:CDS | 70.0% | |
| GGAGGATGGGGACGGGGACG+GGG | - | chr3.4:15158678-15158697 | MS.gene057967:CDS | 75.0% | |
| TGGGGACGGGGACGGGGAAG+AGG | - | chr3.4:15158684-15158703 | MS.gene057967:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 15158666 | 15160889 | 15158666 | ID=MS.gene057967 |
| chr3.4 | mRNA | 15158666 | 15160889 | 15158666 | ID=MS.gene057967.t1;Parent=MS.gene057967 |
| chr3.4 | exon | 15160809 | 15160889 | 15160809 | ID=MS.gene057967.t1.exon1;Parent=MS.gene057967.t1 |
| chr3.4 | CDS | 15160809 | 15160889 | 15160809 | ID=cds.MS.gene057967.t1;Parent=MS.gene057967.t1 |
| chr3.4 | exon | 15159501 | 15159633 | 15159501 | ID=MS.gene057967.t1.exon2;Parent=MS.gene057967.t1 |
| chr3.4 | CDS | 15159501 | 15159633 | 15159501 | ID=cds.MS.gene057967.t1;Parent=MS.gene057967.t1 |
| chr3.4 | exon | 15158871 | 15158981 | 15158871 | ID=MS.gene057967.t1.exon3;Parent=MS.gene057967.t1 |
| chr3.4 | CDS | 15158871 | 15158981 | 15158871 | ID=cds.MS.gene057967.t1;Parent=MS.gene057967.t1 |
| chr3.4 | exon | 15158666 | 15158733 | 15158666 | ID=MS.gene057967.t1.exon4;Parent=MS.gene057967.t1 |
| chr3.4 | CDS | 15158666 | 15158733 | 15158666 | ID=cds.MS.gene057967.t1;Parent=MS.gene057967.t1 |
| Gene Sequence |
| Protein sequence |
